RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5646
(106 letters)
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_A
Length = 140
Score = 80.8 bits (199), Expect = 4e-21
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
+ +LY A L WNG+ G +++ ++ LP + ++ +D + +EA +Q L+
Sbjct: 35 LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 93
Query: 61 STSGTVVYKNMKKTGFNQNFIISAEGA----RWKIISDVFRLQ 99
G+V ++ K+ FNQNFI++A+ + WKI SD FR Q
Sbjct: 94 VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 136
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 154
Score = 78.5 bits (193), Expect = 4e-20
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI-AYL 59
+G LY + WNG+ G +I +++ LP H+++S+D RLPE + L
Sbjct: 55 IGFLYTQ-VSNAVWNGNPINGYDSICEFMKALPSTQHDIQSLDAQRLPEGVTGDMSGGML 113
Query: 60 ISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQ 99
++ +G V K F Q ++ E ++K+ SD FR
Sbjct: 114 LNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFRYV 153
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2
PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A
1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 65.7 bits (160), Expect = 2e-15
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y D + L+W G +G AIV+ +S LP H + + D P+
Sbjct: 29 LGAIYID-ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSC------I 81
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRLQ 99
+ G + GF+Q F++ W +D+FRL
Sbjct: 82 ISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLA 122
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces
cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Length = 125
Score = 59.1 bits (143), Expect = 6e-13
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G LY++ +++L++ +G++ IV+ + LP H + ++D
Sbjct: 27 LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGD-----V 80
Query: 59 LISTSGTVVYKNMKKT-GFNQNFIISAEGARWKIISDVFRL 98
L+ +G ++ + F+Q F + +G + + +D+FRL
Sbjct: 81 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 121
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET:
EPE; 2.74A {Drosophila melanogaster}
Length = 120
Score = 57.9 bits (140), Expect = 2e-12
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 9/102 (8%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+ + Y + + G + I I +L C ++ +D
Sbjct: 25 LHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGNG------V 78
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGAR-WKIISDVFRLQ 99
++ +G + F Q F+++A+ + + + +D+FR Q
Sbjct: 79 VVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 57.3 bits (138), Expect = 4e-12
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G LY ++L+W +G IV + L E+ +D P
Sbjct: 33 LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNG------S 85
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGA-RWKIISDVFRL 98
++ +G V + + F+Q F + G + I +D+FRL
Sbjct: 86 IVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRL 126
>3q90_A RAS GTPase-activating protein-binding protein 1; structural
genomics, structural genomics consortium, SGC, NT (A+B
proteins); 1.70A {Homo sapiens}
Length = 140
Score = 47.2 bits (112), Expect = 3e-08
Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 20/112 (17%)
Query: 1 MGKLYKDEDAVLSWNG--------HGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEE 50
+ + Y ++ G G + I + + C +++ +D H +
Sbjct: 31 LHRFYGK-NSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHATLND 89
Query: 51 AAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAEGAR---WKIISDVFRLQ 99
++ G + N F Q F+++ EG+ + + +D+FR Q
Sbjct: 90 G------VVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQ 135
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific
processing proteases(UB NTF2, protein-protein
recognition; 1.69A {Saccharomyces cerevisiae} SCOP:
d.17.4.2 PDB: 1zx2_A
Length = 154
Score = 42.8 bits (100), Expect = 2e-06
Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 26/120 (21%)
Query: 1 MGKLYKDEDAVLSWNG---------------HGTKGSQAIVKYISELPP----CDHELKS 41
+ Y A L+ G + I K+ S +L +
Sbjct: 33 LAYFYAST-AELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDT 91
Query: 42 MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAE--GARWKIISDVFRLQ 99
+D + LI +G + + F Q FI+ G+ + I +D+ R
Sbjct: 92 IDFQ----YTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFI 147
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 39.2 bits (91), Expect = 7e-05
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 21 GSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG--- 75
+V +++ELP H++ S +DI AQ S +G + K
Sbjct: 89 TRLNVVAFLNELPKTQHDVNSFVVDIS------AQTSTLLCFSVNGVFKEVDGKSRDSLR 142
Query: 76 -FNQNFIISAEG-ARWKIISDVFRLQQTPVNMT 106
F + FI + I++D ++
Sbjct: 143 AFTRTFIAVPASNSGLCIVNDELFVRNASSEEI 175
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 33.6 bits (76), Expect = 0.006
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 33/108 (30%)
Query: 20 KGSQAIVKYISELPPCDHELKS------MDIHRLP-------------EEAAQNQIAYLI 60
G ++I LP H L+ M+ P EE + ++
Sbjct: 89 IGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNK 148
Query: 61 STSGTVVYKNMKKTG--------------FNQNFIISAEGARWKIISD 94
T KN + F++ ++I I SD
Sbjct: 149 KTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIVPMNNSVIIASD 196
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 205
Score = 33.5 bits (76), Expect = 0.006
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 18/87 (20%)
Query: 20 KGSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSG---------TVVY 68
G+ IV +S LP H + + +D+ + + G
Sbjct: 98 HGAMDIVVALSRLPATIHLMDTFVVDVF------LVSATLLGFTLHGTFRDGPSAIKPEN 151
Query: 69 KNMKKTGFNQNFIISAEG-ARWKIISD 94
F + F+++ G + I+SD
Sbjct: 152 TEEHDNYFTRTFMVAPRGEGKVAIVSD 178
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia
coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A*
1bkn_A 1nhj_A* 1b62_A*
Length = 333
Score = 28.6 bits (65), Expect = 0.31
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 42 MDIHRLPEEAAQNQIA 57
M I LP + A NQIA
Sbjct: 3 MPIQVLPPQLA-NQIA 17
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export,
translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Length = 219
Score = 27.8 bits (61), Expect = 0.52
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 33/108 (30%)
Query: 20 KGSQAIVKYISELPPCDHELKS-------------------MDIHRLPEEAAQNQIAYLI 60
G + I K +LP H++ + + +H +E AQ ++
Sbjct: 95 IGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSA 154
Query: 61 STSGTVVYKNMKKTG-------------FNQNFIISAEG-ARWKIISD 94
S++ + + F++ F++ + SD
Sbjct: 155 SSAPSGPRGGSRYHSGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASD 202
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 27.6 bits (62), Expect = 0.67
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 33 PPCDHELKSMDIHRLPEEAAQNQIAYLISTSGT 65
L + D + +N AYL+ TSG+
Sbjct: 154 QSFIENLSTQDTSDILNNYPENLDAYLLYTSGS 186
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB:
1r5p_A 2qke_A 1vgl_A
Length = 105
Score = 26.3 bits (58), Expect = 1.1
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 23 QAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI 56
+ + + + + LK +D+ + P+ A +++I
Sbjct: 26 KMLKNILEQEFQGVYALKVIDVLKNPQLAEEDKI 59
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKS 41
G + + V + G+G K +K + + P + +
Sbjct: 313 GWVARGSTVVCTVTGNGLKDPDTALKDMPSVSPVPVDPVA 352
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; HET: MSE UNL PG4; 1.45A
{Mesorhizobium loti}
Length = 129
Score = 26.1 bits (57), Expect = 1.7
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 1 MGKLYKDEDAVLSW-NGHGTKGSQAIVKYISEL---PPCDHELKSMDIHRLPEEAAQNQI 56
+ Y +DA + G Q I K + +L ++D+ + A ++
Sbjct: 27 VASKY-MDDAAAFPPDMARVDGRQNIQKLWQGAMDMGISELKLTTLDVQESGDFAFESGS 85
Query: 57 AYLIST--SGTVVYKNMKKTGFNQNFIISAEGARWKIISDVF 96
L + +V K + + +G WK+ D++
Sbjct: 86 FSLKAPGKDSKLVDAAGK---YVVVWRKGQDG-GWKLYRDIW 123
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein,
repeat, leucine- rich repeat, nuclear transport; 2.8A
{Saccharomyces cerevisiae} SCOP: d.17.4.2
Length = 184
Score = 25.9 bits (56), Expect = 2.5
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 4 LYKDEDAVLSWNGHGTKGSQAIVK-YISELPPCDHELKSMDIHRLP 48
L+ + + +N + ++ + +++ H L +D H +P
Sbjct: 44 LFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIP 89
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 25.9 bits (57), Expect = 3.3
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP 34
G + + V+ HG K +Q+ + Y S P
Sbjct: 419 GVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIP 451
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 25.7 bits (57), Expect = 3.5
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKS 41
G+L + VL+ GHG K + PP L++
Sbjct: 304 GRLEPESTVVLTLTGHGLKDPATAERVAELPPPVPARLEA 343
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 25.3 bits (56), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
YK M + NQ+ I+S E GA
Sbjct: 147 YKQMARDERNQSIIVSGESGA 167
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y++M+++ NQ IIS E GA
Sbjct: 85 YRSMRQSQENQCVIISGESGA 105
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 25.3 bits (56), Expect = 4.4
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y++M NQ+ +I+ E GA
Sbjct: 163 YRSMLDDRQNQSLLITGESGA 183
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 25.4 bits (56), Expect = 5.1
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y++M NQ+ +I+ E GA
Sbjct: 163 YRSMLDDRQNQSLLITGESGA 183
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 25.3 bits (56), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
+++MK +Q+ I+S E GA
Sbjct: 131 FRDMKVLKLSQSIIVSGESGA 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.9 bits (53), Expect = 5.5
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 3 KLYKDEDA-VLSWNG 16
KLY D+ A L+
Sbjct: 30 KLYADDSAPALAIKA 44
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 25.2 bits (56), Expect = 5.6
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 30 SELPPCDHELKSMDIHRLPEEAAQN--------QIAYLISTSGT 65
S P + L + + LP A QIAY+ +SGT
Sbjct: 132 STTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGT 175
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 24.8 bits (55), Expect = 6.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 36 DHELKSMDIHRLPEEAAQNQIAYLISTSGT 65
+ +K + L + +AY+I TSGT
Sbjct: 164 EDTIKIREGTNLHVPSKSTDLAYVIYTSGT 193
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 24.9 bits (55), Expect = 6.7
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y+ M NQ+ +I+ E GA
Sbjct: 162 YQYMLTDRENQSILITGESGA 182
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 24.5 bits (54), Expect = 7.9
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 45 HRLPE--EAAQNQIAYLISTSGTVVY 68
PE + Q+ L + Y
Sbjct: 59 PSHPEVIKIGIEQMQKLAHAAANDFY 84
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 24.5 bits (54), Expect = 8.1
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKS 41
G E + G+G K +K E +
Sbjct: 306 GFFKGGEVVTCTLTGNGLKDPDTAIKVCEEPITVPPDFDE 345
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 24.6 bits (54), Expect = 8.3
Identities = 6/21 (28%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y++M + +Q+ + + E GA
Sbjct: 137 YRSMLQDREDQSILCTGESGA 157
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown
function, riken structural genomics/proteomics
initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP:
a.22.1.4 PDB: 1wws_A
Length = 148
Score = 24.2 bits (52), Expect = 8.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 23 QAIVKYISELPPCDHELKSMDIHRLPE 49
+ ++ ++ LPP D E+ + LPE
Sbjct: 83 KPVLDALAALPPLDLEVAEDVRNLLPE 109
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 24.7 bits (54), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 68 YKNMKKTGFNQNFIISAEGARWKIIS 93
YK M + NQ+ I+S E K +S
Sbjct: 147 YKQMARDERNQSIIVSGESGAGKTVS 172
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 24.5 bits (54), Expect = 9.6
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 36 DHELKSMDIHRLPEEAAQNQIAYLISTSGT 65
D N AY++ TSGT
Sbjct: 589 DQTRFEEQASDPATAIDPNDPAYIMYTSGT 618
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 9.6
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 41 SMDIHRLPEEAAQ------NQIAYLISTSGTVVYKNMKKTGFNQ-NFIISA 84
LP E + IA I G + N K ++ II +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIES 361
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 24.6 bits (54), Expect = 10.0
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y+NM NQ+ +I+ E GA
Sbjct: 160 YQNMVTDRENQSCLITGESGA 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0833 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,611,981
Number of extensions: 81278
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 42
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)