RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5646
(106 letters)
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 88.4 bits (219), Expect = 1e-24
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLI 60
+ +LY A L WNG+ G +++ ++ LP + ++ +D + +EA +Q L+
Sbjct: 34 LSRLYMG-TATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLV 92
Query: 61 STSGTVVYKNMKKTGFNQNFIISAEGA----RWKIISDVFRLQ 99
G+V ++ K+ FNQNFI++A+ + WKI SD FR Q
Sbjct: 93 VICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQ 135
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 71.0 bits (174), Expect = 4e-18
Identities = 21/101 (20%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G LY++ +++L++ +G++ IV+ + LP H + ++D + +
Sbjct: 24 LGNLYRN-ESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQ---PASPYGDV-- 77
Query: 59 LISTSGTVVYKNMKKT-GFNQNFIISAEGARWKIISDVFRL 98
L+ +G ++ + F+Q F + +G + + +D+FRL
Sbjct: 78 LVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 118
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 69.9 bits (171), Expect = 1e-17
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G +Y + + L+W G +G AIV+ +S LP H + + D P+
Sbjct: 27 LGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSC------I 79
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGARWKIISDVFRL 98
+ G + GF+Q F++ W +D+FRL
Sbjct: 80 ISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 119
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 66.8 bits (163), Expect = 2e-16
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 1 MGKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP--CDHELKSMDIHRLPEEAAQNQIAY 58
+G LY ++L+W +G IV + L E+ +D P
Sbjct: 23 LGGLYGP-QSMLTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNN------GS 75
Query: 59 LISTSGTVVYKNMKKTGFNQNFIISAEGAR-WKIISDVFRL 98
++ +G V + + F+Q F + G + I +D+FRL
Sbjct: 76 IVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRL 116
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 57.4 bits (138), Expect = 2e-12
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 1 MGKLYKDEDAVLSWNG---------------HGTKGSQAIVKYISELPPCDHELKSMDIH 45
+ Y A L+ G + I K+ S LK
Sbjct: 25 LAYFYAST-AELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDT 83
Query: 46 RLPEEAAQNQIAYLISTSGTVVYKNMKKTGFNQNFIISAE--GARWKIISDVFRL 98
+ + LI +G + + F Q FI+ G+ + I +D+ R
Sbjct: 84 IDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRF 138
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 45.2 bits (107), Expect = 1e-07
Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 3 KLYKDEDAVLSWNGHGTKGSQAIV-KYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIS 61
+L+ + + +N + + + +++ H L +D H +P + +
Sbjct: 30 QLFNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHALTGVDYHAIP-----GSGTLICN 84
Query: 62 TSGTVVY 68
+ V +
Sbjct: 85 VNCKVRF 91
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein,
TAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 31.0 bits (70), Expect = 0.013
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 21 GSQAIVKYISELPPCDHELKS--MDIHRLPEEAAQNQIAYLISTSGTVVYKNMKKTG--- 75
+V +++ELP H++ S +DI +AQ S +G V+K +
Sbjct: 89 TRLNVVAFLNELPKTQHDVNSFVVDI------SAQTSTLLCFSVNG--VFKEVDGKSRDS 140
Query: 76 ---FNQNFIISAEG-ARWKIISDVF 96
F + FI + I++D
Sbjct: 141 LRAFTRTFIAVPASNSGLCIVNDEL 165
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 29.6 bits (66), Expect = 0.052
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 21 GSQAIVKYISELPPCDHELKS------MDIHRLPEE 50
G + I K +LP H++ + M++++ P
Sbjct: 84 GQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTL 119
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 221
Score = 28.4 bits (63), Expect = 0.11
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 33/107 (30%)
Query: 21 GSQAIVKYISELPPCDHELK------SMDIHRLP--------------EEAAQNQIAYLI 60
G ++I LP H L+ SM+ P E +
Sbjct: 90 GQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKK 149
Query: 61 STSGTVVYKNMKKTG-------------FNQNFIISAEGARWKIISD 94
+ G F++ ++I I SD
Sbjct: 150 TGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIVPMNNSVIIASD 196
>d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB
{Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]}
Length = 90
Score = 25.4 bits (56), Expect = 0.92
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 23 QAIVKYISELPPCDHELKSMDIHRLPEEAAQNQI 56
+ + + + + LK +D+ + P+ A +++I
Sbjct: 20 KTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKI 53
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.4 bits (55), Expect = 1.8
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y+ M NQ+ +I+ E GA
Sbjct: 114 YQFMLTDRENQSILITGESGA 134
>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
N-terminal domain {Synechococcus elongatus [TaxId:
32046]}
Length = 105
Score = 24.8 bits (54), Expect = 1.9
Identities = 3/35 (8%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 23 QAIVKYI-SELPPCDHELKSMDIHRLPEEAAQNQI 56
Q + + + L+ +++ P+ ++
Sbjct: 30 QRVKNILAAVEATVPISLQVINVADQPQLVEYYRL 64
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 25.2 bits (54), Expect = 1.9
Identities = 7/61 (11%), Positives = 18/61 (29%)
Query: 5 YKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSG 64
++ V + + ++ + E K + +L+ TSG
Sbjct: 190 LRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSG 249
Query: 65 T 65
+
Sbjct: 250 S 250
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.1 bits (54), Expect = 2.0
Identities = 6/21 (28%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y++M + +Q+ + + E GA
Sbjct: 82 YRSMLQDREDQSILCTGESGA 102
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 25.4 bits (54), Expect = 2.0
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPP 34
G + + V+ HG K +Q+ + Y S P
Sbjct: 410 GVIAPTDRTVVVSTAHGLKFTQSKIDYHSNAIP 442
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 25.0 bits (54), Expect = 2.4
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 36 DHELKSMDIHRLPEEAAQNQIAYLISTSGT 65
++ PE +++ TSG+
Sbjct: 234 RDLIEKASPEHQPEAMNAEDPLFILYTSGS 263
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 24.7 bits (53), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 68 YKNMKKTGFNQNFIISAE-GA 87
Y+NM NQ+ +I+ E GA
Sbjct: 112 YQNMVTDRENQSCLITGESGA 132
>d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus
[TaxId: 63363]}
Length = 184
Score = 24.3 bits (52), Expect = 3.2
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 13 SWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLISTSGTVVYKNMK 72
+ G+ K ++ + + L + LK +D + + +A T+ +V MK
Sbjct: 10 TRTGNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMGLVSWKMK 69
Query: 73 KT 74
+
Sbjct: 70 RF 71
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 24.7 bits (53), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 68 YKNMKKTGFNQNFIISAE 85
Y++M NQ+ +I+ E
Sbjct: 116 YRSMLDDRQNQSLLITGE 133
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 24.3 bits (52), Expect = 3.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 68 YKNMKKTGFNQNFIISAE 85
Y++M+++ NQ IIS E
Sbjct: 77 YRSMRQSQENQCVIISGE 94
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 24.3 bits (52), Expect = 4.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 68 YKNMKKTGFNQNFIISAE 85
YK M + NQ+ I+S E
Sbjct: 85 YKQMARDERNQSIIVSGE 102
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus
thermophilus [TaxId: 274]}
Length = 148
Score = 23.9 bits (52), Expect = 4.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 23 QAIVKYISELPPCDHELKSMDIHRLPE 49
+ ++ ++ LPP D E+ + LPE
Sbjct: 83 KPVLDALAALPPLDLEVAEDVRNLLPE 109
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 23.8 bits (50), Expect = 6.6
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 2 GKLYKDEDAVLSWNGHGTKGSQAIVKYISELPPCDHELKSMDIHRLPEEAAQNQIAYLIS 61
G K+ D + W G+ + P D L+ D +R + I ++
Sbjct: 322 GTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGW---FNSSITTSVA 378
Query: 62 TSGTVVYKNMKKTGFNQNFIISAEG 86
T G YK + + F++ EG
Sbjct: 379 TRGVSPYKFL----LSHGFVMDGEG 399
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.387
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,311
Number of extensions: 15368
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 27
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)