BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5647
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/646 (67%), Positives = 525/646 (81%), Gaps = 8/646 (1%)
Query: 92 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQ 151
LG+RR G RKALHDP ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQ
Sbjct: 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQ 60
Query: 152 REGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211
REGVKF+++CVTG RIE++YGCIMADEMGLGKTLQCITL+WTLL+Q P KP IDK I+V
Sbjct: 61 REGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVV 120
Query: 212 APSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET 271
+PSSLV+NW NE+ KWLGGRV + IDGGSK EID+KL +F+ G R PIL+ISYET
Sbjct: 121 SPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET 180
Query: 272 FRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331
FR HA VLHK +VGLV+CDEGHRLKN ++QTY AL + A+RRVL+SGTPIQNDLLEYFS
Sbjct: 181 FRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240
Query: 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTS 391
LVHFVN GILGTAQEF+K++E PIL+G+D+ ASD +R ++L++LI IVNRCLIRRTS
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS 300
Query: 392 ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451
+LSKYLPVK EQVVC +T LQKELY +K +++ G K+ +++LSSITSLK
Sbjct: 301 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLK 357
Query: 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM 511
KLCNHP L+ +K TG +GF+ A+++ P Y+ + + +LS K++VLD +LA+ +
Sbjct: 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYS----TKAVEPQLSGKMLVLDYILAMTRT 413
Query: 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFM 570
TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE FN S+ EFIFM
Sbjct: 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
LSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IEEK
Sbjct: 474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK 533
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQV 690
++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG QV
Sbjct: 534 ILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV 593
Query: 691 KPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHS 736
+PPP +SDCT DLS WHH +KR L DP+L+ W A VSFVF+Q S
Sbjct: 594 RPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRS 639
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 152/490 (31%), Positives = 247/490 (50%), Gaps = 60/490 (12%)
Query: 174 IMADEMGLGKTLQCITLM-WTLL---RQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229
I+ADEMGLGKT+Q + + W + + GP IIV P S + W + KW
Sbjct: 259 ILADEMGLGKTVQTVAFISWLIFARRQNGP--------HIIVVPLSTMPAWLDTFEKW-A 309
Query: 230 GRVAALPIDGGSKAEIDNKLNSFM---QTYGRRPVN-PILVISYETFRSHASVLHKNEVG 285
+ + G K+ + F + G++ + +L+ +YE + L +
Sbjct: 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQ 369
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+ DE HRLKN ES Y++L K R+L++GTP+QN++ E +LV+F+ G Q
Sbjct: 370 FMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ 429
Query: 346 E--FRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
E F Q E Q+ D R R++ I +RR + K LP KTE
Sbjct: 430 EIDFENQDEE-----QEEYIHDLHR-----RIQPFI-------LRRLKKDVEKSLPSKTE 472
Query: 404 QVVCIKMTDLQKELYTNLIKSD--AVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461
+++ ++++D+Q E Y N++ + A+ KGG + L+ + LKK NHP L
Sbjct: 473 RILRVELSDVQTEYYKNILTKNYSALTAGAKGGH-----FSLLNIMNELKKASNHPYLFD 527
Query: 462 DK----IQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKI 517
+ +Q DG N+L + LI S K+++LD +L +K ++
Sbjct: 528 NAEERVLQKFGDGKMTRENVL-----------RGLIMSSGKMVLLDQLLTRLK-KDGHRV 575
Query: 518 VLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAG 576
++ S + LD+ ++G + RLDG++ +R ++ FN SN+F+F+LS++AG
Sbjct: 576 LIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAG 635
Query: 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636
G G+NL+ A+ +V+FD DWNP D QAMAR R GQK VYR +S ++EE++++R
Sbjct: 636 GLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERAR 695
Query: 637 HKKALSSCVV 646
K L ++
Sbjct: 696 KKMILEYAII 705
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 152/534 (28%), Positives = 261/534 (48%), Gaps = 89/534 (16%)
Query: 147 LRPHQREG---VKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203
LRP+Q +G ++FM + +G +AD+MGLGKTLQ I + ++ L
Sbjct: 38 LRPYQIKGFSWMRFMNKL--------GFGICLADDMGLGKTLQTIAVFSDAKKENELTPS 89
Query: 204 LIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNP 263
L+ + P S++KNW E++K+ A+ + SK ++++
Sbjct: 90 LV-----ICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLED--------------YD 130
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
I++ +Y L + E ++ DE +KN +++ ++A+ LK+K R+ L+GTPI+
Sbjct: 131 IILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIE 189
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N + + +S++ F+N G+LG+ EF+ ++ TPI +G D+ A E+L I++
Sbjct: 190 NKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKG-DNMAK-----------EELKAIIS 237
Query: 384 RCLIRRTS---ALLSKYLPVKTEQVVCIKMTDLQKELYT----NLIKS-DAVRRTMKGGE 435
++RRT A+++ LP K E V +T Q +Y NL + D+V + G
Sbjct: 238 PFILRRTKYDKAIIND-LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG- 295
Query: 436 NTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIEL 495
LS++ LK++ +HP L L G + +SGK++ +
Sbjct: 296 ------MILSTLLKLKQIVDHPAL------------------LKGGEQSVRRSGKMIRTM 331
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL-SKLRGYKYVRLDGSMTIKKRA 554
LD DKI + + + + + K + L G ++ K+R
Sbjct: 332 EIIEEALDE---------GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERD 382
Query: 555 KVVETF-NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613
++ F N S +FI +LS KAGG G+NL ANR++ FD WNPA +DQA RV+R GQ
Sbjct: 383 DIISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441
Query: 614 KPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
+ V++ +S G++EEK+ Q A K++L ++ + S ELR + +L
Sbjct: 442 RNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 495
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 149/533 (27%), Positives = 255/533 (47%), Gaps = 87/533 (16%)
Query: 147 LRPHQREGVKFMYECVTGVRIED--AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPL 204
LRP+Q +G + R + +G +AD+ GLGKTLQ I + ++ L L
Sbjct: 38 LRPYQIKGFSWX-------RFXNKLGFGICLADDXGLGKTLQTIAVFSDAKKENELTPSL 90
Query: 205 IDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPI 264
+ + P S++KNW E++K+ A+ + SK ++++ + + TY +
Sbjct: 91 V-----ICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLED-YDIILTTYA------V 138
Query: 265 LVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
L+ + L + E ++ DE +KN +++ ++A+ LK+K R+ L+GTPI+N
Sbjct: 139 LL--------RDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIEN 190
Query: 325 DLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNR 384
+ + +S+ F+N G+LG+ EF+ ++ TPI +G + E+L I++
Sbjct: 191 KVDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKGDNXAK------------EELKAIISP 238
Query: 385 CLIRRTS---ALLSKYLPVKTEQVVCIKMTDLQKELYT----NLIKS-DAVRRTMKGGEN 436
++RRT A+++ LP K E V +T Q Y NL + D+V + G
Sbjct: 239 FILRRTKYDKAIIND-LPDKIETNVYCNLTPEQAAXYKAEVENLFNNIDSVTGIKRKG-- 295
Query: 437 TKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELS 496
LS++ LK++ +HP L L G + +SGK +
Sbjct: 296 -----XILSTLLKLKQIVDHPAL------------------LKGGEQSVRRSGKXIRTXE 332
Query: 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL-SKLRGYKYVRLDGSMTIKKRAK 555
LD DKI + + + + + K + L G ++ K+R
Sbjct: 333 IIEEALDE---------GDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKERDD 383
Query: 556 VVETF-NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614
++ F N S +FI +LS KAGG G+NL ANR++ FD WNPA +DQA RV+R GQ +
Sbjct: 384 IISKFQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTR 442
Query: 615 PCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
V++ +S G++EEK+ Q A K++L ++ + S ELR + +L
Sbjct: 443 NVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 495
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 43/289 (14%)
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY----TNLIKS-DAVRRTMKGGENTKLG 440
L+ R S + S LP K E V +T Q +Y NL + D+V + G
Sbjct: 14 LVPRGSHMASD-LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG------ 66
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
LS++ LK++ +HP L L G + +SGK++ +
Sbjct: 67 -MILSTLLKLKQIVDHPAL------------------LKGGEQSVRRSGKMIRTMEIIEE 107
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL-SKLRGYKYVRLDGSMTIKKRAKVVET 559
LD DKI + + + + + K + L G ++ K+R ++
Sbjct: 108 ALDE---------GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 158
Query: 560 F-NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618
F N S +FI +LS KAGG G+NL ANR++ FD WNPA +DQA RV+R GQ + V
Sbjct: 159 FQNNPSVKFI-VLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217
Query: 619 YRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
++ +S G++EEK+ Q A K++L ++ + S ELR + +L
Sbjct: 218 HKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 266
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
++ADE+GLGKT++ ++ L G ++ +I+ P +L W E + R
Sbjct: 173 VLLADEVGLGKTIEAGXILHQQLLSGA-----AERVLIIVPETLQHQWLVEXLRRFNLRF 227
Query: 233 AALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLH---KNEVGLVLC 289
A + ++A+ D Y +++ S + R L + E L++
Sbjct: 228 ALFDDERYAEAQHD--------AYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVV 279
Query: 290 DEGHRL---KNCESQTYQALMGLKAK--RRVLLSGTPIQNDLLEYFSLVHFVN 337
DE H L ++ S+ YQA+ L +LL+ TP Q +F+ + ++
Sbjct: 280 DEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGXESHFARLRLLD 332
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 43/103 (41%)
Query: 517 IVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576
+V+ + L L + L + G + +I +R + F + +L S+ G
Sbjct: 507 LVICAKAATALQLEQVLREREGIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCSEIG 566
Query: 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
G N A+ V FD +NP +Q + R+ R GQ ++
Sbjct: 567 SEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLK-NCESQTYQALMGLKAKRRVLLSGTP 321
V+ + H ++L +E G++ CD R+ + ES Y + L+ RR+L G P
Sbjct: 100 VVETHARKYHVALLEHDEFGIITCDNWRRVAVSSESVVYSDMAKLRTLRRLLKDGEP 156
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA--N 586
L LSK G++ L G M +++RA V+E F + + + + A G + + N
Sbjct: 298 LAAELSK-EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 356
Query: 587 RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+ D D NP N+ + R+ R G+ F R L+ ++ K
Sbjct: 357 FDLPVDKDGNPDNET-YLHRIGRTGR----FGKRGLAVNMVDSK 395
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA--N 586
L LSK G++ L G M +++RA V+E F + + + + A G + + N
Sbjct: 349 LAAELSK-EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407
Query: 587 RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+ D D NP N+ + R+ R G+ F R L+ ++ K
Sbjct: 408 FDLPVDKDGNPDNET-YLHRIGRTGR----FGKRGLAVNMVDSK 446
>pdb|3PDD|A Chain A, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
Length = 190
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPN 110
SK P++K E + LI P+ I G Y+ KA+ V +G R + P P
Sbjct: 27 SKTPVSKVEFYNGDTLISSDTTAPYTAKITGAAVGAYNLKAVAVLSDGRR--IESPVTPV 84
Query: 111 ALVLYTPPQL 120
+ + P +
Sbjct: 85 LVKVIVKPTV 94
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA--N 586
L LSK G++ L G M +++RA V+E F + + + + A G + + N
Sbjct: 282 LAAELSK-EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340
Query: 587 RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+ D D NP N+ + R+ R G+ F R L+ ++ K
Sbjct: 341 FDLPVDKDGNPDNET-YLHRIGRTGR----FGKRGLAVNMVDSK 379
>pdb|3PDG|A Chain A, Structures Of Clostridium Thermocellum Cbha
Fibronectin(Iii)-Like Modules
Length = 98
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAP 109
SK P++K E + LI P+ I G Y+ KA+ V +G R + P P
Sbjct: 27 SKTPVSKVEFYNGDTLISSDTTAPYTAKITGAAVGAYNLKAVAVLSDGRR--IESPVTP 83
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA--N 586
L LSK G++ L G M +++RA V+E F + + + + A G + + N
Sbjct: 319 LAAELSK-EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 377
Query: 587 RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+ D D NP N+ + R+ R G+ F R L+ ++ K
Sbjct: 378 FDLPVDKDGNPDNET-YLHRIGRTGR----FGKRGLAVNMVDSK 416
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
IR LL YLP ++ V I + DLQKEL+T+ +RR K + + +G
Sbjct: 261 IREIKELLD-YLP-RSSSVAIINVQDLQKELFTDSGAGTMIRRGYKLVKRSSIG 312
>pdb|4FZ2|A Chain A, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
pdb|4FZ2|B Chain B, Crystal Structure Of The Fourth Type Of Archaeal Trna
Splicing Endonuclease From Candidatus Micrarchaeum
Acidiphilum Arman-2
Length = 395
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 472 ENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLA 507
++ ++IL GY Y++GKL++E+ L ++D A
Sbjct: 19 QSTIDILRNGYFGEYRAGKLMLEVEEGLYLVDVRKA 54
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKL 499
MT + +IT+ +K + P + + DG A NI+P A+ GK++ EL+ KL
Sbjct: 172 MTTVHAITATQKTVDGPSGKLWR-----DGRGAAQNIIPASTGAAKAVGKVIPELNGKL 225
>pdb|3LMA|A Chain A, Crystal Structure Of The Stage V Sporulation Protein Ad
(Spovad) From Bacillus Licheniformis. Northeast
Structural Genomics Consortium Target Bir6.
pdb|3LMA|B Chain B, Crystal Structure Of The Stage V Sporulation Protein Ad
(Spovad) From Bacillus Licheniformis. Northeast
Structural Genomics Consortium Target Bir6.
pdb|3LMA|C Chain C, Crystal Structure Of The Stage V Sporulation Protein Ad
(Spovad) From Bacillus Licheniformis. Northeast
Structural Genomics Consortium Target Bir6.
pdb|3LMA|D Chain D, Crystal Structure Of The Stage V Sporulation Protein Ad
(Spovad) From Bacillus Licheniformis. Northeast
Structural Genomics Consortium Target Bir6
Length = 347
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 355 ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI 408
+ G CA A T A+ E G +NR L+ T ALLS + + E + CI
Sbjct: 272 VFAGGSGCACSAVVTFAHIFKEIEAGRLNRVLVVATGALLSPTIIQQKESIPCI 325
>pdb|1DFK|Z Chain Z, Nucleotide-Free Scallop Myosin S1-Near Rigor State
pdb|1DFL|Z Chain Z, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|X Chain X, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
Length = 152
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 64 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 121
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 122 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 149
>pdb|1SCM|C Chain C, Structure Of The Regulatory Domain Of Scallop Myosin At
2.8 Angstroms Resolution
Length = 149
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 63 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 120
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 121 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 148
>pdb|2W4T|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 151
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 63 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 120
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 121 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 148
>pdb|3JTD|C Chain C, Calcium-Free Scallop Myosin Regulatory Domain With
Elc-D19a Point Mutation
Length = 156
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 66 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 123
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 124 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 151
>pdb|1KK8|C Chain C, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 154
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 66 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 123
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 124 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 151
>pdb|1WDC|C Chain C, Scallop Myosin Regulatory Domain
pdb|1B7T|Z Chain Z, Myosin Digested By Papain
pdb|1KK7|Z Chain Z, Scallop Myosin In The Near Rigor Conformation
pdb|1L2O|C Chain C, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|C Chain C, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|C Chain C, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
pdb|1QVI|Z Chain Z, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|Z Chain Z, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|C Chain C, Structure Of Nucleotide-free Scallop Myosin S1
pdb|3JVT|C Chain C, Calcium-Bound Scallop Myosin Regulatory Domain (Lever Arm)
With Reconstituted Complete Light Chains
Length = 156
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+EF YE + Q + A E K +R Q G ++ +R L + L +
Sbjct: 66 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ--GFISGAELRHVLTALGERLSDEDVD 123
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
+ IK+TDLQ++L N+ D V++ M G
Sbjct: 124 EI-IKLTDLQEDLEGNVKYEDFVKKVMAG 151
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 23/92 (25%)
Query: 441 MTALSSITSLKKLCN---HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSA 497
MT + SIT+ +K + H D + +G NI+P+ A+ GK+L EL
Sbjct: 185 MTTVHSITATQKTVDGPSHKDWRGGRTASG--------NIIPSSTGAAKAVGKVLPELQG 236
Query: 498 KLM------------VLDTMLAVIKMTTDDKI 517
KL V+D + ++K T D+I
Sbjct: 237 KLTGMAFRVPTTDVSVVDLTVKLVKAATYDEI 268
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 40/176 (22%)
Query: 473 NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDL--- 529
N + +LPTG GK LI + M+A ++T VL+ T+ L L
Sbjct: 25 NCLIVLPTGL------GKTLIAM---------MIAEYRLTKYGGKVLMLAPTKPLVLQHA 69
Query: 530 --FERLSKLRGYKYVRLDGSMTIKKRAK-------VVETFNKTSNEFIFMLSSKAGGCGL 580
F RL L K V L G + ++R+K +V T N+ + AG L
Sbjct: 70 ESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLL------AGRISL 123
Query: 581 NLIGANRLVMFDPDWNPANDDQA---MARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
+ L++FD + + A + A +AR ++ K P + S GS EK+M+
Sbjct: 124 EDVS---LIVFD-EAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
MT + +IT+ +K + P K G G + NI+P+ A+ GK+L +L+ KL
Sbjct: 176 MTTVHAITATQKTVDGPS---SKDWRG--GRAASFNIIPSSTGAAKAVGKVLPDLNGKLT 230
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+ + + ++ D V + + D + S ++ +L G + + V F
Sbjct: 231 GMSFRVPTVDVSVVDLTVRIEK-AASYDAIK--SAIKSASEGKLKGIIGYVEEDLVSTDF 287
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
S IF +KA G LN + +D +W +N
Sbjct: 288 VGDSRSSIF--DAKA-GIALNDNFVKLVAWYDNEWGYSN 323
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
MT + +IT+ +K + P K G G + NI+P+ A+ GK+L +L+ KL
Sbjct: 177 MTTVHAITATQKTVDGPS---SKDWRG--GRAASFNIIPSSTGAAKAVGKVLPDLNGKLT 231
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+ + + ++ D V + + D + S ++ +L G + + V F
Sbjct: 232 GMSFRVPTVDVSVVDLTVRIEK-AASYDAIK--SAIKSASEGKLKGIIGYVEEDLVSTDF 288
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
S IF +KA G LN + +D +W +N
Sbjct: 289 VGDSRSSIF--DAKA-GIALNDNFVKLVAWYDNEWGYSN 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,603,773
Number of Sequences: 62578
Number of extensions: 887258
Number of successful extensions: 2249
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2226
Number of HSP's gapped (non-prelim): 33
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)