Query psy5647
Match_columns 755
No_of_seqs 477 out of 2782
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:04:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0390|consensus 100.0 8E-111 2E-115 946.6 48.6 611 61-686 94-768 (776)
2 KOG0387|consensus 100.0 3E-106 6E-111 883.1 43.8 500 137-670 196-702 (923)
3 KOG0385|consensus 100.0 1E-100 3E-105 833.5 42.9 479 145-671 166-648 (971)
4 KOG0384|consensus 100.0 4.5E-98 1E-102 848.9 37.4 562 144-755 368-950 (1373)
5 KOG1015|consensus 100.0 1.8E-97 4E-102 816.7 36.0 529 128-671 650-1322(1567)
6 KOG0392|consensus 100.0 5.6E-93 1.2E-97 802.7 40.5 511 138-670 967-1500(1549)
7 KOG0389|consensus 100.0 4.4E-89 9.5E-94 746.6 42.9 483 145-652 398-915 (941)
8 PLN03142 Probable chromatin-re 100.0 1.3E-88 2.9E-93 801.5 50.1 482 139-670 162-645 (1033)
9 KOG0391|consensus 100.0 3.7E-89 8E-94 761.9 34.3 510 135-669 604-1431(1958)
10 KOG0388|consensus 100.0 6.6E-85 1.4E-89 701.1 33.2 481 137-649 558-1178(1185)
11 KOG0386|consensus 100.0 6E-82 1.3E-86 705.2 28.4 468 144-649 392-862 (1157)
12 KOG1016|consensus 100.0 2.3E-80 4.9E-85 669.8 28.5 527 135-679 243-901 (1387)
13 KOG1002|consensus 100.0 7.5E-76 1.6E-80 611.4 32.7 499 139-666 177-790 (791)
14 KOG4439|consensus 100.0 2.9E-74 6.3E-79 622.2 34.9 497 141-667 320-901 (901)
15 COG0553 HepA Superfamily II DN 100.0 1.3E-67 2.7E-72 645.0 39.3 509 141-667 333-865 (866)
16 KOG1000|consensus 100.0 1.4E-62 3E-67 513.4 33.8 433 137-649 189-627 (689)
17 PRK04914 ATP-dependent helicas 100.0 4.9E-58 1.1E-62 540.9 32.8 443 144-657 150-637 (956)
18 KOG1001|consensus 100.0 7.6E-54 1.6E-58 488.4 22.8 471 149-648 135-673 (674)
19 KOG0383|consensus 100.0 3.3E-48 7.1E-53 435.3 9.1 388 145-579 294-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 9.2E-44 2E-48 380.3 23.6 289 150-460 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 4.7E-39 1E-43 368.1 34.9 357 144-646 253-631 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 1.3E-33 2.8E-38 339.6 40.7 447 145-642 14-496 (773)
23 KOG0298|consensus 100.0 1.6E-32 3.4E-37 315.7 19.8 268 170-460 374-691 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1E-29 2.2E-34 270.6 35.6 427 146-647 15-503 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 1.7E-28 3.7E-33 274.3 32.3 366 142-637 32-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 1.3E-27 2.8E-32 272.3 34.6 339 145-625 113-455 (501)
27 KOG0354|consensus 99.9 8.2E-24 1.8E-28 238.2 34.8 442 145-647 61-550 (746)
28 PRK11448 hsdR type I restricti 99.9 1.8E-25 3.9E-30 270.7 20.5 361 145-622 412-815 (1123)
29 PRK11192 ATP-dependent RNA hel 99.9 1.2E-23 2.6E-28 236.8 33.5 319 145-618 22-347 (434)
30 PTZ00110 helicase; Provisional 99.9 1.1E-23 2.4E-28 241.8 33.0 324 146-625 152-484 (545)
31 TIGR00614 recQ_fam ATP-depende 99.9 1.1E-23 2.4E-28 238.8 31.1 307 145-619 10-329 (470)
32 PRK11776 ATP-dependent RNA hel 99.9 1.4E-23 3E-28 238.0 30.8 315 146-625 26-349 (460)
33 PRK10590 ATP-dependent RNA hel 99.9 1.6E-23 3.4E-28 236.7 30.8 315 145-617 22-346 (456)
34 PLN00206 DEAD-box ATP-dependen 99.9 1.9E-23 4.2E-28 239.1 31.8 322 145-625 142-475 (518)
35 KOG1123|consensus 99.9 7E-25 1.5E-29 230.8 18.2 340 144-630 300-658 (776)
36 PRK04837 ATP-dependent RNA hel 99.9 1.2E-23 2.5E-28 236.0 29.0 320 146-624 30-361 (423)
37 TIGR01389 recQ ATP-dependent D 99.9 6.7E-23 1.4E-27 239.0 35.0 305 145-618 12-326 (591)
38 PRK11057 ATP-dependent DNA hel 99.9 4E-23 8.7E-28 240.4 32.5 304 145-618 24-338 (607)
39 PRK01297 ATP-dependent RNA hel 99.9 4.7E-23 1E-27 234.3 31.9 322 145-624 108-441 (475)
40 PRK04537 ATP-dependent RNA hel 99.9 5.3E-23 1.2E-27 237.0 31.8 321 145-624 30-363 (572)
41 PTZ00424 helicase 45; Provisio 99.9 3.9E-22 8.5E-27 222.5 30.2 318 145-625 49-374 (401)
42 PRK11634 ATP-dependent RNA hel 99.9 6.5E-22 1.4E-26 229.4 30.8 312 146-618 28-347 (629)
43 PLN03137 ATP-dependent DNA hel 99.9 7.4E-22 1.6E-26 232.1 30.8 309 145-619 459-783 (1195)
44 TIGR00643 recG ATP-dependent D 99.9 1.9E-21 4.1E-26 227.4 31.6 312 143-618 232-561 (630)
45 PRK10917 ATP-dependent DNA hel 99.9 4.1E-21 8.8E-26 226.0 30.9 310 143-617 258-583 (681)
46 TIGR00580 mfd transcription-re 99.9 4.1E-21 8.9E-26 229.1 29.9 312 143-624 448-769 (926)
47 KOG0331|consensus 99.9 7.4E-21 1.6E-25 208.6 27.0 318 146-616 113-441 (519)
48 PRK10689 transcription-repair 99.9 1.9E-20 4.1E-25 228.1 31.3 310 143-617 597-913 (1147)
49 TIGR03817 DECH_helic helicase/ 99.9 2.4E-20 5.3E-25 220.4 30.5 334 146-633 36-394 (742)
50 KOG0330|consensus 99.9 8.7E-21 1.9E-25 195.5 22.2 327 145-636 82-416 (476)
51 PRK13767 ATP-dependent helicas 99.9 6.4E-20 1.4E-24 221.0 30.9 105 514-620 284-395 (876)
52 COG0513 SrmB Superfamily II DN 99.8 1E-18 2.2E-23 199.0 30.6 333 146-638 51-392 (513)
53 PRK02362 ski2-like helicase; P 99.8 4.8E-19 1E-23 211.4 27.9 321 145-624 22-396 (737)
54 TIGR01587 cas3_core CRISPR-ass 99.8 5.4E-19 1.2E-23 194.2 25.4 130 501-637 211-353 (358)
55 COG4096 HsdR Type I site-speci 99.8 1.5E-19 3.2E-24 203.4 20.3 353 139-622 158-545 (875)
56 PRK01172 ski2-like helicase; P 99.8 8.1E-18 1.8E-22 199.4 30.8 149 146-321 22-179 (674)
57 PRK00254 ski2-like helicase; P 99.8 1.5E-17 3.3E-22 198.0 31.5 159 145-331 22-187 (720)
58 TIGR00348 hsdR type I site-spe 99.8 2.7E-17 5.8E-22 192.9 32.5 162 144-324 236-405 (667)
59 TIGR02621 cas3_GSU0051 CRISPR- 99.8 1.9E-17 4.1E-22 192.7 27.9 99 513-616 271-383 (844)
60 COG0514 RecQ Superfamily II DN 99.8 5.9E-17 1.3E-21 181.3 28.6 312 145-626 16-338 (590)
61 TIGR03714 secA2 accessory Sec 99.8 5.3E-17 1.2E-21 187.1 25.8 120 492-617 403-531 (762)
62 KOG0350|consensus 99.7 1.4E-16 2.9E-21 169.3 22.5 390 141-641 154-554 (620)
63 KOG0345|consensus 99.7 6.9E-16 1.5E-20 163.0 27.5 315 146-618 28-359 (567)
64 COG4889 Predicted helicase [Ge 99.7 6.6E-18 1.4E-22 188.0 12.9 170 138-321 153-350 (1518)
65 KOG0333|consensus 99.7 1.2E-16 2.7E-21 170.4 21.2 362 147-648 268-643 (673)
66 COG1200 RecG RecG-like helicas 99.7 5.2E-16 1.1E-20 173.2 26.7 310 143-617 259-585 (677)
67 TIGR03158 cas3_cyano CRISPR-as 99.7 6.7E-16 1.5E-20 168.8 26.9 86 512-608 270-357 (357)
68 COG1201 Lhr Lhr-like helicases 99.7 1.1E-15 2.5E-20 177.0 28.0 344 144-643 20-378 (814)
69 KOG0328|consensus 99.7 1.7E-16 3.8E-21 157.3 17.3 315 149-628 52-376 (400)
70 KOG0348|consensus 99.7 3.9E-16 8.4E-21 166.9 20.7 115 510-628 421-557 (708)
71 PRK09751 putative ATP-dependen 99.7 7.2E-16 1.6E-20 189.3 25.9 95 514-610 244-371 (1490)
72 KOG0342|consensus 99.7 3.7E-16 8.1E-21 166.2 19.9 112 498-613 316-427 (543)
73 PRK09200 preprotein translocas 99.7 3.5E-15 7.5E-20 173.8 28.4 119 493-616 408-534 (790)
74 KOG0340|consensus 99.7 2.6E-15 5.6E-20 153.7 22.9 333 148-640 31-378 (442)
75 PHA02653 RNA helicase NPH-II; 99.7 5.8E-15 1.2E-19 171.1 27.7 108 514-627 395-516 (675)
76 TIGR00963 secA preprotein tran 99.7 2.6E-15 5.6E-20 172.3 24.0 118 495-617 387-511 (745)
77 KOG0335|consensus 99.7 2.2E-15 4.8E-20 163.0 21.7 320 145-618 95-439 (482)
78 PRK12898 secA preprotein trans 99.7 9.7E-15 2.1E-19 166.7 27.7 131 494-634 454-592 (656)
79 PF04851 ResIII: Type III rest 99.7 2.5E-16 5.3E-21 155.5 12.9 155 146-322 3-183 (184)
80 PRK09401 reverse gyrase; Revie 99.7 1.1E-14 2.4E-19 178.4 30.0 134 142-296 76-214 (1176)
81 KOG0343|consensus 99.7 7.3E-15 1.6E-19 157.7 23.8 326 147-638 92-434 (758)
82 COG1204 Superfamily II helicas 99.7 3.1E-15 6.7E-20 175.5 22.0 158 146-330 31-197 (766)
83 COG1205 Distinct helicase fami 99.7 1.6E-14 3.4E-19 172.0 28.0 330 145-632 69-429 (851)
84 cd00079 HELICc Helicase superf 99.7 4.7E-16 1E-20 144.6 11.7 120 497-619 12-131 (131)
85 PRK05580 primosome assembly pr 99.6 9E-14 2E-18 163.5 31.2 153 145-322 143-305 (679)
86 COG1202 Superfamily II helicas 99.6 7.3E-15 1.6E-19 158.4 18.5 322 145-624 215-552 (830)
87 KOG0339|consensus 99.6 4.4E-14 9.5E-19 150.3 23.4 126 497-628 453-578 (731)
88 KOG0338|consensus 99.6 1.7E-14 3.7E-19 153.7 19.1 113 514-633 426-539 (691)
89 TIGR00595 priA primosomal prot 99.6 2.6E-13 5.7E-18 154.1 28.2 96 527-624 271-382 (505)
90 TIGR01970 DEAH_box_HrpB ATP-de 99.6 7.1E-14 1.5E-18 165.8 24.4 107 514-625 209-336 (819)
91 TIGR01054 rgy reverse gyrase. 99.6 1.3E-13 2.7E-18 169.4 25.6 132 144-297 76-213 (1171)
92 smart00487 DEXDc DEAD-like hel 99.6 1.5E-14 3.3E-19 143.6 14.5 159 144-323 6-172 (201)
93 PRK14701 reverse gyrase; Provi 99.6 4.7E-13 1E-17 167.7 29.2 132 144-296 77-213 (1638)
94 PRK09694 helicase Cas3; Provis 99.6 7.7E-13 1.7E-17 157.1 27.5 98 513-613 559-665 (878)
95 PF00271 Helicase_C: Helicase 99.6 5E-15 1.1E-19 125.0 6.4 78 532-611 1-78 (78)
96 PRK11664 ATP-dependent RNA hel 99.5 2.6E-13 5.6E-18 161.4 22.1 109 514-627 212-341 (812)
97 COG1197 Mfd Transcription-repa 99.5 4E-12 8.6E-17 149.9 31.4 315 143-624 591-912 (1139)
98 KOG4284|consensus 99.5 6.3E-14 1.4E-18 152.7 15.2 310 149-614 50-370 (980)
99 KOG0326|consensus 99.5 7.2E-15 1.6E-19 148.2 6.6 123 494-623 305-427 (459)
100 KOG0336|consensus 99.5 4E-13 8.6E-18 139.6 18.8 303 168-625 255-572 (629)
101 KOG0341|consensus 99.5 8.9E-14 1.9E-18 143.5 13.8 171 496-686 407-578 (610)
102 KOG0347|consensus 99.5 2.3E-13 4.9E-18 146.4 17.3 130 514-647 463-613 (731)
103 PRK13104 secA preprotein trans 99.5 2E-12 4.2E-17 150.8 26.4 123 492-619 423-583 (896)
104 KOG0332|consensus 99.5 7.2E-13 1.6E-17 136.7 20.1 122 497-625 316-443 (477)
105 cd00046 DEXDc DEAD-like helica 99.5 1.3E-13 2.8E-18 128.8 13.7 137 172-321 2-144 (144)
106 KOG0351|consensus 99.5 7.4E-13 1.6E-17 156.8 18.7 311 145-620 263-589 (941)
107 PRK12906 secA preprotein trans 99.5 7.8E-12 1.7E-16 145.1 25.9 119 494-617 421-547 (796)
108 KOG0344|consensus 99.5 2.9E-12 6.4E-17 139.9 19.3 122 496-624 372-494 (593)
109 KOG0334|consensus 99.4 2.8E-12 6E-17 148.5 18.7 124 495-624 596-719 (997)
110 smart00490 HELICc helicase sup 99.4 3.3E-13 7.2E-18 114.3 7.7 81 529-611 2-82 (82)
111 PRK11131 ATP-dependent RNA hel 99.4 2.1E-11 4.5E-16 148.0 25.5 109 512-627 284-413 (1294)
112 PRK12904 preprotein translocas 99.4 9.5E-11 2.1E-15 136.8 29.5 121 494-619 411-569 (830)
113 KOG0346|consensus 99.4 1.2E-11 2.5E-16 130.3 19.4 102 514-617 268-404 (569)
114 TIGR00631 uvrb excinuclease AB 99.4 1.8E-10 4E-15 134.2 31.3 133 496-634 425-564 (655)
115 PRK13107 preprotein translocas 99.4 6.8E-11 1.5E-15 137.7 27.4 121 493-618 429-586 (908)
116 TIGR01967 DEAH_box_HrpA ATP-de 99.4 2.9E-11 6.3E-16 147.3 23.1 109 513-628 278-407 (1283)
117 COG4098 comFA Superfamily II D 99.4 5.1E-10 1.1E-14 115.0 28.3 301 144-613 95-404 (441)
118 KOG0952|consensus 99.4 1.6E-10 3.5E-15 133.1 26.9 168 168-351 124-310 (1230)
119 KOG0352|consensus 99.4 6.7E-11 1.5E-15 124.0 21.5 319 148-620 22-359 (641)
120 PF00270 DEAD: DEAD/DEAH box h 99.3 2E-11 4.3E-16 118.8 15.1 157 149-327 2-167 (169)
121 PRK05298 excinuclease ABC subu 99.3 9E-10 1.9E-14 129.3 29.4 124 496-625 429-557 (652)
122 cd00268 DEADc DEAD-box helicas 99.3 4.6E-11 9.9E-16 120.3 16.0 158 146-322 21-185 (203)
123 KOG0951|consensus 99.3 2E-10 4.3E-15 133.9 19.4 161 168-341 323-502 (1674)
124 PF11496 HDA2-3: Class II hist 99.2 3.1E-10 6.8E-15 119.5 18.9 221 402-637 4-257 (297)
125 KOG0327|consensus 99.2 8.5E-11 1.8E-15 122.7 14.2 119 498-625 252-370 (397)
126 PRK12900 secA preprotein trans 99.2 2.8E-09 6E-14 124.9 27.5 119 493-616 578-704 (1025)
127 COG1203 CRISPR-associated heli 99.2 4.9E-10 1.1E-14 133.4 21.9 131 512-645 438-572 (733)
128 PF13872 AAA_34: P-loop contai 99.2 2.6E-10 5.5E-15 117.9 16.7 234 144-420 35-302 (303)
129 TIGR01407 dinG_rel DnaQ family 99.2 3.5E-09 7.7E-14 128.6 27.9 78 513-595 673-756 (850)
130 KOG0353|consensus 99.2 8.1E-10 1.8E-14 114.1 16.0 315 145-622 93-466 (695)
131 PRK12899 secA preprotein trans 99.1 7.1E-08 1.5E-12 113.1 32.1 122 493-619 548-677 (970)
132 PRK12326 preprotein translocas 99.1 2.7E-08 5.8E-13 113.8 27.8 121 494-619 408-543 (764)
133 KOG0337|consensus 99.1 2.4E-09 5.1E-14 112.7 16.4 123 497-625 246-368 (529)
134 COG0556 UvrB Helicase subunit 99.0 6.1E-08 1.3E-12 105.3 25.0 134 501-637 431-571 (663)
135 PRK13103 secA preprotein trans 99.0 2.3E-07 5.1E-12 108.7 27.6 122 493-619 429-587 (913)
136 COG0610 Type I site-specific r 98.9 1.4E-07 3E-12 114.8 25.0 162 147-325 249-417 (962)
137 KOG0947|consensus 98.9 5.6E-08 1.2E-12 111.4 20.0 142 144-321 295-444 (1248)
138 TIGR00596 rad1 DNA repair prot 98.8 1.7E-07 3.7E-12 111.0 19.6 62 262-323 8-74 (814)
139 COG4581 Superfamily II RNA hel 98.8 1.1E-07 2.4E-12 112.9 17.9 146 143-321 116-270 (1041)
140 PRK15483 type III restriction- 98.8 1.2E-07 2.7E-12 112.3 16.2 197 148-355 8-276 (986)
141 PRK12903 secA preprotein trans 98.7 4.8E-06 1E-10 97.0 27.4 121 494-619 407-535 (925)
142 COG1199 DinG Rad3-related DNA 98.7 1.8E-06 3.8E-11 102.8 24.3 80 513-596 478-560 (654)
143 KOG1513|consensus 98.7 1.1E-06 2.5E-11 98.8 20.7 243 143-422 261-538 (1300)
144 TIGR00604 rad3 DNA repair heli 98.7 2E-06 4.3E-11 102.8 23.7 73 146-227 10-83 (705)
145 KOG0948|consensus 98.7 1.5E-07 3.2E-12 105.5 12.7 141 145-321 128-276 (1041)
146 KOG0949|consensus 98.6 4.2E-06 9E-11 96.6 22.0 159 149-334 514-682 (1330)
147 PRK08074 bifunctional ATP-depe 98.6 3.9E-06 8.4E-11 102.9 23.7 84 513-598 751-839 (928)
148 COG1198 PriA Primosomal protei 98.6 1.3E-05 2.9E-10 93.5 26.6 154 145-321 197-359 (730)
149 TIGR03117 cas_csf4 CRISPR-asso 98.6 5.2E-05 1.1E-09 87.8 30.9 96 501-600 458-566 (636)
150 CHL00122 secA preprotein trans 98.5 4E-05 8.7E-10 90.0 26.9 84 495-582 406-490 (870)
151 COG1110 Reverse gyrase [DNA re 98.5 0.0001 2.2E-09 86.4 28.7 131 143-295 79-215 (1187)
152 PRK07246 bifunctional ATP-depe 98.5 1.2E-05 2.5E-10 97.0 22.0 78 513-595 646-725 (820)
153 PF07652 Flavi_DEAD: Flaviviru 98.4 1.9E-06 4.1E-11 79.8 10.6 126 171-321 5-136 (148)
154 COG1643 HrpA HrpA-like helicas 98.4 1.2E-05 2.7E-10 95.1 19.5 110 513-628 258-390 (845)
155 KOG0950|consensus 98.4 1.1E-05 2.4E-10 93.7 18.1 159 149-326 215-392 (1008)
156 PRK11747 dinG ATP-dependent DN 98.4 0.00013 2.9E-09 86.7 27.8 78 515-596 535-617 (697)
157 KOG0922|consensus 98.4 4.9E-05 1.1E-09 85.5 21.8 112 513-627 257-392 (674)
158 KOG0329|consensus 98.3 9.3E-06 2E-10 80.6 14.0 79 496-614 268-346 (387)
159 PF02399 Herpes_ori_bp: Origin 98.3 2E-05 4.4E-10 91.4 19.0 113 496-619 266-384 (824)
160 PRK12902 secA preprotein trans 98.3 0.00027 5.9E-09 83.1 26.6 85 494-582 420-505 (939)
161 PF13871 Helicase_C_4: Helicas 98.3 1.4E-06 3E-11 90.3 6.8 94 555-651 52-154 (278)
162 KOG0349|consensus 98.2 4E-06 8.7E-11 88.7 8.8 103 506-610 497-602 (725)
163 PRK12901 secA preprotein trans 98.2 0.00021 4.5E-09 85.0 23.0 119 495-618 610-736 (1112)
164 TIGR02562 cas3_yersinia CRISPR 98.1 0.0014 3E-08 78.6 27.4 47 565-614 837-883 (1110)
165 smart00489 DEXDc3 DEAD-like he 98.1 4.2E-05 9.1E-10 81.3 13.1 76 146-227 8-84 (289)
166 smart00488 DEXDc2 DEAD-like he 98.1 4.2E-05 9.1E-10 81.3 13.1 76 146-227 8-84 (289)
167 PF08658 Rad54_N: Rad54 N term 97.9 2.6E-06 5.7E-11 83.0 0.9 58 61-119 75-139 (196)
168 KOG0953|consensus 97.9 3.2E-05 6.9E-10 84.9 8.3 111 501-614 344-465 (700)
169 KOG0920|consensus 97.8 0.00096 2.1E-08 79.3 19.2 123 497-625 395-544 (924)
170 KOG0924|consensus 97.8 0.00054 1.2E-08 77.0 15.6 103 538-646 597-721 (1042)
171 COG3587 Restriction endonuclea 97.7 0.0002 4.4E-09 82.4 12.1 138 168-321 72-242 (985)
172 PF13086 AAA_11: AAA domain; P 97.7 0.00029 6.3E-09 71.9 12.4 72 146-226 1-75 (236)
173 PRK10536 hypothetical protein; 97.5 0.0013 2.9E-08 67.5 13.2 151 147-326 60-217 (262)
174 PF07517 SecA_DEAD: SecA DEAD- 97.5 0.002 4.4E-08 67.0 14.1 155 143-330 74-266 (266)
175 KOG0926|consensus 97.5 0.0015 3.3E-08 74.7 14.0 63 559-624 622-703 (1172)
176 COG0653 SecA Preprotein transl 97.4 0.0064 1.4E-07 71.6 19.0 117 492-613 408-535 (822)
177 PF02562 PhoH: PhoH-like prote 97.4 0.0011 2.4E-08 66.2 10.5 147 148-327 6-161 (205)
178 KOG0923|consensus 97.4 0.0026 5.7E-08 71.5 13.7 124 515-646 474-630 (902)
179 PF13604 AAA_30: AAA domain; P 97.2 0.0046 9.9E-08 61.9 12.8 125 146-323 1-132 (196)
180 KOG1803|consensus 97.2 0.0033 7.2E-08 70.5 12.2 67 142-223 181-248 (649)
181 PF13401 AAA_22: AAA domain; P 97.1 0.0015 3.2E-08 60.4 7.8 119 170-321 4-125 (131)
182 PF12340 DUF3638: Protein of u 97.1 0.0043 9.4E-08 62.6 11.3 116 145-274 22-143 (229)
183 PRK14873 primosome assembly pr 96.9 0.0073 1.6E-07 71.1 12.2 125 179-321 169-303 (665)
184 PF09848 DUF2075: Uncharacteri 96.9 0.0054 1.2E-07 67.3 10.4 45 173-222 4-48 (352)
185 TIGR00376 DNA helicase, putati 96.8 0.021 4.5E-07 67.4 15.6 67 145-226 156-223 (637)
186 KOG0925|consensus 96.7 0.027 5.8E-07 61.6 13.7 63 564-628 311-390 (699)
187 KOG1131|consensus 96.7 0.024 5.2E-07 62.4 13.4 62 146-216 16-77 (755)
188 PRK04296 thymidine kinase; Pro 96.6 0.0075 1.6E-07 60.0 8.3 34 173-213 5-38 (190)
189 KOG1802|consensus 96.5 0.019 4.2E-07 64.8 11.2 79 146-242 410-489 (935)
190 PF13307 Helicase_C_2: Helicas 96.4 0.0073 1.6E-07 58.7 6.6 80 512-597 7-94 (167)
191 COG0553 HepA Superfamily II DN 96.4 0.00086 1.9E-08 82.6 -0.2 183 143-343 81-289 (866)
192 KOG1805|consensus 96.0 0.038 8.3E-07 65.2 10.8 159 138-323 657-831 (1100)
193 TIGR01448 recD_rel helicase, p 95.9 0.064 1.4E-06 64.3 12.6 134 144-323 321-454 (720)
194 KOG4150|consensus 95.8 0.044 9.6E-07 60.8 9.7 131 495-630 507-645 (1034)
195 cd00009 AAA The AAA+ (ATPases 95.7 0.11 2.4E-06 48.0 11.0 27 169-195 18-44 (151)
196 PRK10875 recD exonuclease V su 95.5 0.063 1.4E-06 62.8 10.3 147 148-323 154-303 (615)
197 TIGR01447 recD exodeoxyribonuc 95.5 0.078 1.7E-06 61.9 10.9 146 149-323 148-297 (586)
198 COG1875 NYN ribonuclease and A 95.3 0.038 8.1E-07 58.9 6.6 146 150-324 232-390 (436)
199 smart00382 AAA ATPases associa 95.1 0.075 1.6E-06 48.6 7.7 46 171-223 3-48 (148)
200 PRK14956 DNA polymerase III su 94.7 0.19 4.2E-06 56.6 10.5 47 150-198 22-68 (484)
201 TIGR03015 pepcterm_ATPase puta 94.7 0.5 1.1E-05 49.4 13.4 42 149-194 26-67 (269)
202 TIGR02881 spore_V_K stage V sp 94.6 0.13 2.9E-06 53.8 8.7 29 170-198 42-70 (261)
203 PF05621 TniB: Bacterial TniB 94.2 0.95 2.1E-05 47.8 13.8 140 148-321 39-189 (302)
204 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.29 6.2E-06 49.8 10.0 30 168-197 36-65 (226)
205 PRK06526 transposase; Provisio 94.1 0.28 6.2E-06 51.0 9.7 31 168-198 96-126 (254)
206 PRK07952 DNA replication prote 94.0 0.53 1.2E-05 48.6 11.4 49 149-198 79-127 (244)
207 PTZ00112 origin recognition co 94.0 0.72 1.6E-05 55.2 13.5 47 147-196 759-807 (1164)
208 KOG0951|consensus 93.9 0.24 5.2E-06 60.2 9.6 107 168-298 1157-1268(1674)
209 PLN03025 replication factor C 93.9 0.8 1.7E-05 49.5 13.1 27 170-196 34-60 (319)
210 PRK08084 DNA replication initi 93.9 0.43 9.2E-06 49.2 10.5 44 151-197 29-72 (235)
211 PRK07003 DNA polymerase III su 93.7 0.58 1.3E-05 55.3 11.9 45 151-197 21-65 (830)
212 PRK07994 DNA polymerase III su 93.5 0.73 1.6E-05 54.2 12.6 45 151-197 21-65 (647)
213 TIGR02880 cbbX_cfxQ probable R 93.4 0.36 7.8E-06 51.2 9.2 30 170-199 58-87 (284)
214 PRK12723 flagellar biosynthesi 93.4 1 2.2E-05 49.8 13.0 132 171-338 175-314 (388)
215 PRK08116 hypothetical protein; 93.4 0.82 1.8E-05 48.1 11.7 29 170-198 114-142 (268)
216 PRK14961 DNA polymerase III su 93.3 0.88 1.9E-05 50.1 12.4 45 150-196 20-64 (363)
217 TIGR02928 orc1/cdc6 family rep 93.1 1.7 3.7E-05 47.7 14.4 47 148-197 20-67 (365)
218 PRK12323 DNA polymerase III su 93.0 1.1 2.4E-05 52.3 12.7 28 171-198 39-66 (700)
219 PRK14974 cell division protein 93.0 1.2 2.6E-05 48.2 12.5 26 173-198 143-168 (336)
220 COG1484 DnaC DNA replication p 92.9 0.46 1E-05 49.5 8.9 51 168-225 103-153 (254)
221 PRK08727 hypothetical protein; 92.8 1 2.2E-05 46.2 11.2 28 171-198 42-69 (233)
222 PRK14952 DNA polymerase III su 92.8 0.95 2.1E-05 52.8 12.0 45 151-197 18-62 (584)
223 PF00448 SRP54: SRP54-type pro 92.7 1 2.2E-05 44.9 10.7 133 173-338 4-142 (196)
224 COG3421 Uncharacterized protei 92.7 0.077 1.7E-06 59.7 2.8 40 176-221 3-43 (812)
225 PRK14963 DNA polymerase III su 92.7 1.2 2.5E-05 51.3 12.4 47 151-199 19-65 (504)
226 PRK11889 flhF flagellar biosyn 92.6 1.5 3.2E-05 48.3 12.4 127 172-338 243-379 (436)
227 PRK06645 DNA polymerase III su 92.4 0.96 2.1E-05 51.8 11.3 46 151-198 26-71 (507)
228 PRK14960 DNA polymerase III su 92.3 1.5 3.3E-05 51.3 12.7 45 151-197 20-64 (702)
229 KOG1132|consensus 92.3 0.47 1E-05 56.0 8.6 89 514-603 561-664 (945)
230 PRK05703 flhF flagellar biosyn 92.3 2 4.4E-05 48.2 13.6 55 283-338 299-359 (424)
231 PRK07764 DNA polymerase III su 92.2 0.9 2E-05 55.1 11.2 27 171-197 38-64 (824)
232 PRK14949 DNA polymerase III su 91.9 1.7 3.6E-05 52.6 12.7 25 173-197 41-65 (944)
233 TIGR02768 TraA_Ti Ti-type conj 91.7 1.5 3.3E-05 53.0 12.5 58 145-217 351-408 (744)
234 PRK14955 DNA polymerase III su 91.7 1.5 3.2E-05 49.0 11.7 46 151-198 21-66 (397)
235 PRK14958 DNA polymerase III su 91.7 1.9 4E-05 49.7 12.6 46 151-198 21-66 (509)
236 CHL00181 cbbX CbbX; Provisiona 91.6 0.48 1E-05 50.3 7.3 30 170-199 59-88 (287)
237 PRK14969 DNA polymerase III su 91.5 1.9 4.2E-05 49.9 12.6 27 171-197 39-65 (527)
238 PF13245 AAA_19: Part of AAA d 91.4 0.62 1.3E-05 38.8 6.3 43 172-217 12-54 (76)
239 smart00491 HELICc2 helicase su 91.4 0.94 2E-05 42.7 8.2 54 542-596 23-81 (142)
240 PRK06835 DNA replication prote 91.3 1.9 4.1E-05 46.7 11.5 52 146-198 160-211 (329)
241 PRK12377 putative replication 91.2 1.6 3.4E-05 45.3 10.4 30 169-198 100-129 (248)
242 PF06862 DUF1253: Protein of u 91.2 3 6.4E-05 46.7 13.1 119 505-624 290-414 (442)
243 PRK14951 DNA polymerase III su 91.1 1.4 3E-05 51.7 10.9 47 151-199 21-67 (618)
244 PRK09112 DNA polymerase III su 91.1 2.3 5.1E-05 46.5 12.1 51 144-197 22-72 (351)
245 PRK14087 dnaA chromosomal repl 91.1 1.5 3.4E-05 49.6 11.1 49 170-223 141-189 (450)
246 cd01121 Sms Sms (bacterial rad 90.8 2.4 5.1E-05 46.8 11.8 90 170-296 82-171 (372)
247 PHA02533 17 large terminase pr 90.7 1.9 4.1E-05 49.9 11.4 56 145-214 58-113 (534)
248 PRK06871 DNA polymerase III su 90.6 4.1 8.9E-05 44.0 13.2 51 147-199 3-53 (325)
249 TIGR00708 cobA cob(I)alamin ad 90.5 2 4.3E-05 41.8 9.6 59 276-334 90-152 (173)
250 PRK14962 DNA polymerase III su 90.5 1.6 3.4E-05 49.8 10.4 27 171-197 37-63 (472)
251 PRK14964 DNA polymerase III su 90.3 2.1 4.5E-05 48.8 11.2 28 170-197 35-62 (491)
252 PRK05642 DNA replication initi 90.3 2.6 5.7E-05 43.3 11.1 27 171-197 46-72 (234)
253 PRK00149 dnaA chromosomal repl 90.2 2.3 4.9E-05 48.4 11.6 30 170-199 148-177 (450)
254 PRK12402 replication factor C 90.2 1.8 3.9E-05 46.9 10.4 25 172-196 38-62 (337)
255 PRK07471 DNA polymerase III su 90.1 3.3 7.1E-05 45.6 12.2 47 151-199 24-70 (365)
256 COG3267 ExeA Type II secretory 90.0 1.7 3.7E-05 44.5 9.0 67 138-217 24-90 (269)
257 PRK00411 cdc6 cell division co 90.0 3.4 7.3E-05 45.9 12.5 30 169-198 54-83 (394)
258 PRK14948 DNA polymerase III su 89.9 2.6 5.7E-05 49.7 11.9 47 150-198 20-66 (620)
259 PRK05707 DNA polymerase III su 89.8 2.2 4.7E-05 46.3 10.4 49 146-199 3-51 (328)
260 PF01695 IstB_IS21: IstB-like 89.8 0.84 1.8E-05 44.8 6.6 43 168-217 45-87 (178)
261 KOG0989|consensus 89.7 1.6 3.4E-05 45.9 8.7 44 150-196 40-83 (346)
262 PRK09111 DNA polymerase III su 89.6 2.2 4.8E-05 50.0 10.9 47 151-199 29-75 (598)
263 TIGR00362 DnaA chromosomal rep 89.5 3.6 7.8E-05 46.0 12.3 29 170-198 136-164 (405)
264 PF06733 DEAD_2: DEAD_2; Inte 89.5 0.28 6.1E-06 47.9 3.0 37 261-297 119-159 (174)
265 COG0552 FtsY Signal recognitio 89.4 5.6 0.00012 42.6 12.6 122 173-328 142-276 (340)
266 PRK05986 cob(I)alamin adenolsy 89.3 5.9 0.00013 39.2 12.0 139 169-336 21-172 (191)
267 PRK06921 hypothetical protein; 89.2 2.8 6.1E-05 44.0 10.4 29 169-197 116-144 (266)
268 PRK13889 conjugal transfer rel 89.1 3.7 8E-05 50.8 12.8 126 146-324 346-473 (988)
269 PF05970 PIF1: PIF1-like helic 89.0 1.5 3.2E-05 48.4 8.6 62 146-217 1-62 (364)
270 PRK06893 DNA replication initi 89.0 3.4 7.5E-05 42.2 10.7 28 171-198 40-67 (229)
271 PRK14959 DNA polymerase III su 88.9 4.1 8.9E-05 47.7 12.3 28 170-197 38-65 (624)
272 cd00561 CobA_CobO_BtuR ATP:cor 88.8 8.9 0.00019 36.8 12.6 135 174-334 6-150 (159)
273 PRK12422 chromosomal replicati 88.7 1.9 4.2E-05 48.7 9.3 28 171-198 142-169 (445)
274 PRK08769 DNA polymerase III su 88.5 6.3 0.00014 42.4 12.7 54 144-199 2-55 (319)
275 PRK07993 DNA polymerase III su 88.5 4.5 9.7E-05 44.0 11.7 53 146-200 2-54 (334)
276 PRK05563 DNA polymerase III su 88.3 5 0.00011 46.8 12.7 29 170-198 38-66 (559)
277 PRK05896 DNA polymerase III su 88.3 2.6 5.7E-05 49.0 10.1 30 170-199 38-67 (605)
278 PRK07133 DNA polymerase III su 88.2 5.2 0.00011 47.6 12.7 46 151-198 23-68 (725)
279 PRK08691 DNA polymerase III su 88.2 7.6 0.00016 46.0 13.8 45 151-197 21-65 (709)
280 PRK13826 Dtr system oriT relax 88.0 4.9 0.00011 50.2 12.8 127 145-324 380-508 (1102)
281 PTZ00293 thymidine kinase; Pro 88.0 1.1 2.3E-05 45.1 6.0 35 174-215 8-42 (211)
282 PRK08903 DnaA regulatory inact 88.0 4.3 9.4E-05 41.3 10.8 30 169-198 41-70 (227)
283 PF13177 DNA_pol3_delta2: DNA 88.0 7.6 0.00017 37.4 11.8 48 151-200 2-49 (162)
284 PRK14965 DNA polymerase III su 87.7 5.3 0.00012 46.8 12.5 45 151-197 21-65 (576)
285 PRK14957 DNA polymerase III su 87.2 6 0.00013 45.8 12.3 45 151-197 21-65 (546)
286 PHA02544 44 clamp loader, smal 87.2 5.2 0.00011 42.9 11.3 40 283-322 100-141 (316)
287 KOG0740|consensus 86.9 1.3 2.8E-05 49.1 6.3 54 162-226 179-232 (428)
288 PRK14088 dnaA chromosomal repl 86.9 6.6 0.00014 44.5 12.2 29 171-199 131-159 (440)
289 TIGR03346 chaperone_ClpB ATP-d 86.8 2.9 6.2E-05 51.5 10.0 40 154-196 181-220 (852)
290 CHL00095 clpC Clp protease ATP 86.7 3.2 6.9E-05 50.9 10.3 29 168-196 198-226 (821)
291 COG1435 Tdk Thymidine kinase [ 86.7 2.1 4.6E-05 42.1 7.0 108 174-320 8-118 (201)
292 PHA03372 DNA packaging termina 86.6 0.66 1.4E-05 53.1 4.0 114 178-320 210-336 (668)
293 COG0470 HolB ATPase involved i 86.6 6.2 0.00013 42.3 11.6 29 172-200 26-54 (325)
294 PRK09183 transposase/IS protei 86.6 3.6 7.7E-05 43.0 9.3 31 168-198 100-130 (259)
295 PRK00440 rfc replication facto 86.4 9.6 0.00021 40.7 12.9 42 151-195 22-63 (319)
296 PRK14950 DNA polymerase III su 86.3 6 0.00013 46.5 12.0 45 151-197 21-65 (585)
297 PRK00771 signal recognition pa 86.0 6.5 0.00014 44.3 11.5 28 171-198 96-123 (437)
298 TIGR03345 VI_ClpV1 type VI sec 86.0 4.5 9.8E-05 49.7 11.0 40 154-196 195-234 (852)
299 PRK08451 DNA polymerase III su 85.9 7.1 0.00015 45.0 11.9 26 172-197 38-63 (535)
300 PRK11034 clpA ATP-dependent Cl 85.9 3.6 7.7E-05 49.7 9.9 29 169-197 206-234 (758)
301 PF05876 Terminase_GpA: Phage 85.8 0.95 2.1E-05 52.7 4.9 166 144-333 14-191 (557)
302 PF00265 TK: Thymidine kinase; 85.8 1.2 2.7E-05 43.5 5.0 34 175-215 6-39 (176)
303 PRK11823 DNA repair protein Ra 85.8 7.3 0.00016 44.2 11.9 91 170-297 80-170 (446)
304 cd01120 RecA-like_NTPases RecA 85.7 8.9 0.00019 35.9 11.0 34 174-214 3-36 (165)
305 PRK14954 DNA polymerase III su 85.6 5.6 0.00012 46.8 11.1 46 151-198 21-66 (620)
306 KOG0738|consensus 85.2 4.8 0.00011 43.7 9.3 59 157-226 233-291 (491)
307 PRK07940 DNA polymerase III su 85.1 6.2 0.00013 43.9 10.7 48 151-198 10-64 (394)
308 TIGR02639 ClpA ATP-dependent C 85.1 5.3 0.00011 48.4 11.0 30 168-197 201-230 (731)
309 cd03115 SRP The signal recogni 84.6 11 0.00025 36.3 11.3 26 173-198 3-28 (173)
310 KOG0952|consensus 84.5 0.95 2.1E-05 54.5 4.1 111 169-298 942-1061(1230)
311 PRK14722 flhF flagellar biosyn 84.4 9.8 0.00021 41.9 11.7 28 169-196 136-163 (374)
312 PHA03368 DNA packaging termina 84.3 3.6 7.7E-05 48.0 8.4 131 170-320 254-389 (738)
313 PF00580 UvrD-helicase: UvrD/R 84.2 2.2 4.8E-05 45.3 6.6 56 147-216 1-56 (315)
314 PRK10865 protein disaggregatio 84.2 7.1 0.00015 48.1 11.6 39 155-196 187-225 (857)
315 PRK06731 flhF flagellar biosyn 84.0 18 0.00039 38.0 13.0 128 171-338 76-213 (270)
316 PRK14953 DNA polymerase III su 84.0 13 0.00027 42.7 12.8 45 150-196 20-64 (486)
317 PRK14086 dnaA chromosomal repl 83.9 5.3 0.00012 46.6 9.7 27 171-197 315-341 (617)
318 KOG0442|consensus 83.8 25 0.00054 42.0 14.9 60 585-650 545-608 (892)
319 PRK06647 DNA polymerase III su 83.3 7.9 0.00017 45.2 10.9 27 171-197 39-65 (563)
320 PF13173 AAA_14: AAA domain 83.2 7 0.00015 35.8 8.6 40 283-323 61-100 (128)
321 PRK08181 transposase; Validate 82.7 7.7 0.00017 40.7 9.7 47 147-198 88-134 (269)
322 PRK12724 flagellar biosynthesi 82.1 15 0.00032 41.0 11.9 60 278-338 294-361 (432)
323 KOG0780|consensus 81.6 5.2 0.00011 43.4 7.8 49 173-228 104-152 (483)
324 PRK06067 flagellar accessory p 81.6 9.9 0.00021 38.9 9.9 52 168-226 23-74 (234)
325 COG2256 MGS1 ATPase related to 81.5 10 0.00022 41.6 10.0 25 168-192 46-70 (436)
326 PRK06090 DNA polymerase III su 81.4 13 0.00029 40.0 11.0 52 146-199 3-54 (319)
327 PRK13342 recombination factor 81.3 11 0.00024 42.2 11.0 25 169-193 35-59 (413)
328 PRK08533 flagellar accessory p 81.0 17 0.00037 37.2 11.3 41 168-215 22-62 (230)
329 KOG0991|consensus 81.0 3.6 7.8E-05 41.6 5.9 28 168-195 46-73 (333)
330 PRK06964 DNA polymerase III su 80.7 13 0.00029 40.4 10.8 49 147-199 2-50 (342)
331 PRK11054 helD DNA helicase IV; 80.5 3.7 7.9E-05 49.1 7.1 64 145-222 195-258 (684)
332 PF07015 VirC1: VirC1 protein; 80.5 10 0.00022 38.7 9.1 38 180-224 12-51 (231)
333 PRK10416 signal recognition pa 80.2 35 0.00075 36.8 13.8 33 173-212 117-149 (318)
334 COG1702 PhoH Phosphate starvat 80.1 0.89 1.9E-05 48.5 1.5 53 147-213 129-181 (348)
335 PF00004 AAA: ATPase family as 79.9 5.1 0.00011 36.3 6.5 36 174-219 2-37 (132)
336 TIGR02760 TraI_TIGR conjugativ 79.8 15 0.00032 49.4 12.8 59 145-217 428-486 (1960)
337 PRK10867 signal recognition pa 79.3 33 0.00072 38.6 13.7 26 172-197 102-127 (433)
338 TIGR02397 dnaX_nterm DNA polym 78.7 15 0.00032 40.1 10.7 45 151-197 19-63 (355)
339 TIGR03689 pup_AAA proteasome A 78.5 4.3 9.2E-05 46.6 6.5 29 168-196 214-242 (512)
340 TIGR01074 rep ATP-dependent DN 78.1 13 0.00028 44.5 10.9 67 147-227 2-69 (664)
341 cd02037 MRP-like MRP (Multiple 78.1 27 0.00058 33.6 11.2 53 282-338 66-118 (169)
342 smart00492 HELICc3 helicase su 78.0 13 0.00029 34.9 8.7 53 542-596 26-80 (141)
343 TIGR00416 sms DNA repair prote 77.8 29 0.00062 39.5 12.9 49 169-224 93-141 (454)
344 PRK13709 conjugal transfer nic 77.8 15 0.00033 48.3 11.7 137 143-323 964-1101(1747)
345 TIGR01425 SRP54_euk signal rec 77.8 43 0.00093 37.6 13.9 26 173-198 103-128 (429)
346 cd01124 KaiC KaiC is a circadi 77.8 5.9 0.00013 38.6 6.6 47 173-226 2-48 (187)
347 PHA03333 putative ATPase subun 77.3 23 0.00049 41.8 11.7 36 173-214 190-225 (752)
348 TIGR00064 ftsY signal recognit 77.1 55 0.0012 34.4 13.9 33 173-212 75-107 (272)
349 PRK04195 replication factor C 77.0 18 0.00038 41.6 11.1 25 170-194 39-63 (482)
350 PRK12727 flagellar biosynthesi 76.9 41 0.00089 38.8 13.5 28 170-197 350-377 (559)
351 PHA00012 I assembly protein 76.9 7.7 0.00017 41.5 7.2 25 175-199 6-30 (361)
352 COG2812 DnaX DNA polymerase II 76.7 10 0.00022 43.5 8.7 132 151-320 21-156 (515)
353 TIGR01075 uvrD DNA helicase II 76.7 9.3 0.0002 46.2 9.1 56 146-215 4-59 (715)
354 PRK13849 putative crown gall t 76.4 15 0.00032 37.7 9.2 36 180-222 12-49 (231)
355 TIGR03880 KaiC_arch_3 KaiC dom 76.2 21 0.00046 36.1 10.4 50 170-226 16-65 (224)
356 PF13481 AAA_25: AAA domain; P 76.0 14 0.0003 36.3 8.7 58 172-229 34-94 (193)
357 PRK14712 conjugal transfer nic 75.9 16 0.00035 47.4 11.0 138 143-324 832-970 (1623)
358 cd01122 GP4d_helicase GP4d_hel 75.4 20 0.00043 37.5 10.2 49 169-224 29-78 (271)
359 PF06564 YhjQ: YhjQ protein; 75.3 9 0.0002 39.5 7.2 31 180-217 12-44 (243)
360 PRK13341 recombination factor 75.1 20 0.00044 43.1 11.2 25 169-193 51-75 (725)
361 PRK06305 DNA polymerase III su 75.0 20 0.00043 40.7 10.7 46 151-198 22-67 (451)
362 COG2109 BtuR ATP:corrinoid ade 74.7 57 0.0012 32.2 11.9 61 277-337 116-180 (198)
363 PRK08058 DNA polymerase III su 74.7 28 0.0006 37.8 11.3 47 150-198 10-56 (329)
364 PF03354 Terminase_1: Phage Te 74.6 9.9 0.00022 43.5 8.2 59 149-214 1-63 (477)
365 TIGR02655 circ_KaiC circadian 73.5 27 0.00058 40.1 11.4 52 168-226 261-312 (484)
366 PF00308 Bac_DnaA: Bacterial d 73.5 29 0.00063 35.2 10.4 29 171-199 35-63 (219)
367 COG3973 Superfamily I DNA and 73.5 7.4 0.00016 44.6 6.4 68 146-224 212-279 (747)
368 PRK07399 DNA polymerase III su 73.2 43 0.00093 36.0 12.2 46 151-198 9-54 (314)
369 PRK14971 DNA polymerase III su 72.9 29 0.00062 41.1 11.5 27 171-197 40-66 (614)
370 TIGR00959 ffh signal recogniti 72.9 62 0.0013 36.5 13.6 24 172-195 101-124 (428)
371 PRK11773 uvrD DNA-dependent he 72.8 15 0.00032 44.5 9.5 57 145-215 8-64 (721)
372 PRK10917 ATP-dependent DNA hel 72.5 22 0.00047 42.8 10.6 93 495-590 292-389 (681)
373 TIGR00678 holB DNA polymerase 72.4 15 0.00033 36.0 8.0 27 171-197 15-41 (188)
374 PRK08939 primosomal protein Dn 72.4 11 0.00023 40.6 7.2 30 169-198 155-184 (306)
375 PRK06904 replicative DNA helic 72.3 68 0.0015 36.7 14.1 115 173-297 224-348 (472)
376 cd00984 DnaB_C DnaB helicase C 72.3 39 0.00085 34.5 11.3 40 169-214 12-51 (242)
377 TIGR03878 thermo_KaiC_2 KaiC d 72.2 27 0.00059 36.4 10.1 38 169-213 35-72 (259)
378 PRK10919 ATP-dependent DNA hel 72.2 6.7 0.00014 47.0 6.2 56 146-215 2-57 (672)
379 PRK08506 replicative DNA helic 72.1 61 0.0013 37.0 13.7 115 172-297 194-316 (472)
380 PRK12726 flagellar biosynthesi 72.0 61 0.0013 35.8 12.8 47 152-198 181-234 (407)
381 TIGR03499 FlhF flagellar biosy 72.0 25 0.00054 37.2 9.9 26 172-197 196-221 (282)
382 COG4626 Phage terminase-like p 72.0 22 0.00049 40.6 9.8 179 141-347 56-253 (546)
383 PF06745 KaiC: KaiC; InterPro 72.0 11 0.00023 38.3 6.9 53 168-227 17-70 (226)
384 COG1474 CDC6 Cdc6-related prot 71.3 26 0.00057 38.6 10.1 51 146-199 20-71 (366)
385 PHA00350 putative assembly pro 71.0 11 0.00024 41.8 7.0 24 175-198 6-30 (399)
386 PF05496 RuvB_N: Holliday junc 70.8 6.3 0.00014 40.0 4.7 24 170-193 50-73 (233)
387 TIGR02688 conserved hypothetic 70.6 14 0.0003 41.2 7.6 31 168-198 207-238 (449)
388 COG0541 Ffh Signal recognition 70.4 23 0.00049 39.4 9.1 36 173-215 103-138 (451)
389 PRK08760 replicative DNA helic 70.0 67 0.0014 36.8 13.4 114 173-296 232-352 (476)
390 CHL00176 ftsH cell division pr 69.9 19 0.00041 42.8 9.1 25 169-193 215-239 (638)
391 PRK04132 replication factor C 69.7 21 0.00044 43.6 9.5 44 283-329 630-677 (846)
392 KOG0744|consensus 69.6 26 0.00056 37.5 8.9 57 141-197 148-204 (423)
393 PRK03992 proteasome-activating 69.5 7.4 0.00016 43.3 5.5 27 168-194 163-189 (389)
394 TIGR02760 TraI_TIGR conjugativ 69.0 22 0.00048 47.8 10.4 132 145-323 1018-1151(1960)
395 PF02572 CobA_CobO_BtuR: ATP:c 68.9 30 0.00066 33.7 8.8 60 276-335 89-152 (172)
396 PF01443 Viral_helicase1: Vira 68.4 19 0.00041 36.5 7.9 40 283-325 62-101 (234)
397 PRK05580 primosome assembly pr 67.6 48 0.001 39.8 12.1 94 495-592 172-266 (679)
398 PTZ00454 26S protease regulato 67.3 8.9 0.00019 42.7 5.5 26 168-193 177-202 (398)
399 TIGR02012 tigrfam_recA protein 66.5 33 0.00071 37.0 9.4 44 168-218 53-96 (321)
400 TIGR00595 priA primosomal prot 66.4 42 0.00092 38.7 11.0 95 494-592 6-101 (505)
401 cd01125 repA Hexameric Replica 66.0 42 0.00092 34.3 10.0 40 173-212 4-48 (239)
402 TIGR01243 CDC48 AAA family ATP 65.9 14 0.0003 44.8 7.3 43 168-220 485-527 (733)
403 PF02606 LpxK: Tetraacyldisacc 65.4 21 0.00045 38.7 7.7 19 180-198 47-65 (326)
404 PF06068 TIP49: TIP49 C-termin 65.4 9.1 0.0002 41.7 4.8 46 149-195 30-75 (398)
405 cd01128 rho_factor Transcripti 64.5 55 0.0012 33.9 10.4 20 169-188 15-34 (249)
406 TIGR02782 TrbB_P P-type conjug 64.3 16 0.00035 39.0 6.6 36 155-195 122-157 (299)
407 PRK13833 conjugal transfer pro 64.0 17 0.00036 39.3 6.6 42 146-195 128-169 (323)
408 PRK14721 flhF flagellar biosyn 63.4 96 0.0021 34.8 12.6 55 283-338 269-328 (420)
409 PRK08699 DNA polymerase III su 63.2 81 0.0018 34.1 11.8 49 147-199 2-50 (325)
410 TIGR01242 26Sp45 26S proteasom 63.1 11 0.00023 41.6 5.1 26 169-194 155-180 (364)
411 CHL00095 clpC Clp protease ATP 63.0 16 0.00035 44.9 7.1 47 150-196 513-565 (821)
412 PRK07004 replicative DNA helic 62.9 74 0.0016 36.2 11.9 114 173-297 216-338 (460)
413 PRK05748 replicative DNA helic 62.7 1.3E+02 0.0027 34.2 13.8 115 172-297 205-328 (448)
414 TIGR03600 phage_DnaB phage rep 61.9 93 0.002 34.9 12.5 44 172-222 196-240 (421)
415 TIGR00682 lpxK tetraacyldisacc 61.8 28 0.0006 37.4 7.8 19 180-198 40-58 (311)
416 TIGR01241 FtsH_fam ATP-depende 61.7 22 0.00048 40.9 7.6 26 168-193 86-111 (495)
417 cd03028 GRX_PICOT_like Glutare 61.4 39 0.00086 28.8 7.3 58 514-571 7-70 (90)
418 PRK05973 replicative DNA helic 61.3 14 0.00031 38.0 5.2 40 168-214 62-101 (237)
419 TIGR00365 monothiol glutaredox 61.3 38 0.00083 29.4 7.3 63 514-576 11-79 (97)
420 TIGR00643 recG ATP-dependent D 61.3 36 0.00078 40.5 9.5 90 495-587 266-360 (630)
421 cd00983 recA RecA is a bacter 61.1 65 0.0014 34.8 10.4 43 169-218 54-96 (325)
422 COG0593 DnaA ATPase involved i 60.9 66 0.0014 35.8 10.6 31 170-200 113-143 (408)
423 PF12846 AAA_10: AAA-like doma 60.7 18 0.00039 38.0 6.2 40 171-217 2-41 (304)
424 KOG0349|consensus 60.6 7.5 0.00016 42.5 3.1 73 149-231 27-121 (725)
425 KOG1133|consensus 60.4 15 0.00032 42.8 5.6 47 145-196 14-60 (821)
426 TIGR03877 thermo_KaiC_1 KaiC d 60.1 27 0.00059 35.8 7.2 41 168-215 19-59 (237)
427 TIGR02237 recomb_radB DNA repa 60.0 98 0.0021 30.7 11.2 39 170-215 12-50 (209)
428 COG0464 SpoVK ATPases of the A 59.8 12 0.00027 42.9 5.1 71 146-226 249-322 (494)
429 cd02034 CooC The accessory pro 59.7 98 0.0021 27.9 9.9 48 173-229 2-49 (116)
430 COG1066 Sms Predicted ATP-depe 59.7 78 0.0017 35.1 10.6 90 171-298 94-183 (456)
431 cd01129 PulE-GspE PulE/GspE Th 59.5 16 0.00035 38.2 5.5 41 147-194 64-104 (264)
432 TIGR00665 DnaB replicative DNA 59.4 1.5E+02 0.0032 33.4 13.7 44 173-222 198-241 (434)
433 KOG0298|consensus 59.0 4.5 9.8E-05 49.9 1.3 124 514-643 1221-1344(1394)
434 TIGR00767 rho transcription te 59.0 49 0.0011 36.8 9.1 26 169-194 167-192 (415)
435 PF03796 DnaB_C: DnaB-like hel 58.9 64 0.0014 33.4 9.9 117 172-298 21-145 (259)
436 COG3598 RepA RecA-family ATPas 58.9 73 0.0016 34.2 9.8 27 168-194 87-113 (402)
437 PHA02542 41 41 helicase; Provi 58.9 58 0.0013 37.2 10.1 45 173-224 193-237 (473)
438 TIGR02640 gas_vesic_GvpN gas v 58.8 18 0.00039 37.8 5.6 40 149-193 5-44 (262)
439 PRK09165 replicative DNA helic 58.6 1.5E+02 0.0034 34.1 13.7 120 173-297 220-355 (497)
440 COG2255 RuvB Holliday junction 58.0 20 0.00044 37.6 5.6 26 169-194 51-76 (332)
441 PRK14723 flhF flagellar biosyn 57.8 92 0.002 37.7 11.8 74 283-357 263-355 (767)
442 COG1224 TIP49 DNA helicase TIP 57.5 17 0.00037 39.2 5.1 28 168-195 63-90 (450)
443 COG1419 FlhF Flagellar GTP-bin 56.4 1.9E+02 0.0042 32.1 13.0 135 170-339 203-341 (407)
444 COG0003 ArsA Predicted ATPase 56.0 38 0.00081 36.6 7.6 19 180-198 12-30 (322)
445 PRK09354 recA recombinase A; P 55.9 1.1E+02 0.0023 33.6 11.0 42 170-218 60-101 (349)
446 TIGR01281 DPOR_bchL light-inde 55.4 12 0.00026 39.0 3.8 25 180-211 10-34 (268)
447 PRK07413 hypothetical protein; 55.2 1E+02 0.0022 34.0 10.7 145 168-334 198-361 (382)
448 TIGR01073 pcrA ATP-dependent D 55.1 21 0.00045 43.3 6.1 55 146-214 4-58 (726)
449 PHA00673 acetyltransferase dom 54.7 17 0.00036 34.7 4.1 45 283-327 87-134 (154)
450 PRK13894 conjugal transfer ATP 54.6 30 0.00064 37.4 6.6 42 146-195 132-173 (319)
451 TIGR03881 KaiC_arch_4 KaiC dom 54.5 45 0.00097 33.8 7.7 44 168-218 18-61 (229)
452 PRK14873 primosome assembly pr 54.3 68 0.0015 38.4 10.0 78 495-575 170-249 (665)
453 PRK07276 DNA polymerase III su 54.1 1.5E+02 0.0032 31.6 11.5 50 146-199 2-51 (290)
454 PRK04328 hypothetical protein; 54.0 40 0.00088 34.9 7.3 39 168-213 21-59 (249)
455 PRK08840 replicative DNA helic 54.0 2E+02 0.0044 32.8 13.4 46 173-224 220-265 (464)
456 TIGR03345 VI_ClpV1 type VI sec 53.6 35 0.00077 42.0 7.8 46 150-195 570-621 (852)
457 PRK09376 rho transcription ter 53.5 21 0.00045 39.5 5.1 28 169-197 169-196 (416)
458 PRK13235 nifH nitrogenase redu 53.4 14 0.00029 38.9 3.7 25 180-211 11-35 (274)
459 COG4646 DNA methylase [Transcr 53.0 6.7 0.00014 43.2 1.3 31 311-341 473-503 (637)
460 PRK10037 cell division protein 52.9 14 0.00031 38.2 3.7 25 180-211 12-36 (250)
461 COG2874 FlaH Predicted ATPases 52.5 2.3E+02 0.0049 28.8 11.6 46 173-225 31-76 (235)
462 PRK10824 glutaredoxin-4; Provi 52.5 91 0.002 28.2 8.3 64 514-578 14-84 (115)
463 KOG1807|consensus 52.4 52 0.0011 39.0 8.2 84 146-241 378-462 (1025)
464 PRK13230 nitrogenase reductase 52.0 15 0.00033 38.6 3.8 25 180-211 11-35 (279)
465 TIGR01243 CDC48 AAA family ATP 52.0 24 0.00053 42.8 6.0 27 168-194 210-236 (733)
466 CHL00072 chlL photochlorophyll 51.6 16 0.00034 38.9 3.8 19 180-198 10-28 (290)
467 PRK06321 replicative DNA helic 51.2 1.9E+02 0.0041 33.1 12.6 46 173-224 229-274 (472)
468 PRK06995 flhF flagellar biosyn 51.0 1.4E+02 0.0029 34.3 11.3 53 283-336 334-391 (484)
469 KOG0739|consensus 50.9 25 0.00053 37.1 4.9 50 168-227 164-213 (439)
470 KOG1942|consensus 50.7 29 0.00062 36.5 5.3 27 168-194 62-88 (456)
471 PRK05636 replicative DNA helic 50.6 1.3E+02 0.0028 34.7 11.3 44 173-222 268-311 (505)
472 PRK13185 chlL protochlorophyll 50.4 17 0.00036 38.1 3.8 27 178-211 10-36 (270)
473 PRK05564 DNA polymerase III su 49.9 1.1E+02 0.0024 32.8 10.1 27 171-197 27-53 (313)
474 TIGR00347 bioD dethiobiotin sy 49.8 23 0.0005 33.9 4.4 26 174-199 2-27 (166)
475 CHL00206 ycf2 Ycf2; Provisiona 49.6 53 0.0011 43.4 8.4 43 168-220 1628-1670(2281)
476 cd02032 Bchl_like This family 48.7 18 0.00039 37.7 3.8 19 180-198 10-28 (267)
477 TIGR03346 chaperone_ClpB ATP-d 48.7 42 0.00091 41.5 7.4 48 150-197 569-622 (852)
478 cd02117 NifH_like This family 48.5 19 0.00041 36.1 3.8 27 178-211 8-34 (212)
479 TIGR01287 nifH nitrogenase iro 48.4 19 0.0004 37.8 3.8 25 180-211 10-34 (275)
480 COG0467 RAD55 RecA-superfamily 48.4 45 0.00097 34.7 6.6 41 168-215 21-61 (260)
481 PF13500 AAA_26: AAA domain; P 48.2 21 0.00045 35.4 3.9 27 173-199 4-30 (199)
482 COG2247 LytB Putative cell wal 48.1 63 0.0014 34.4 7.4 62 511-572 73-139 (337)
483 TIGR02785 addA_Gpos recombinat 48.1 39 0.00085 43.6 7.2 59 147-220 2-60 (1232)
484 PRK12608 transcription termina 47.7 17 0.00036 39.9 3.3 30 169-198 132-161 (380)
485 TIGR02639 ClpA ATP-dependent C 47.3 38 0.00082 41.1 6.6 23 172-194 486-508 (731)
486 PF00437 T2SE: Type II/IV secr 47.2 19 0.00041 37.6 3.6 48 280-333 194-241 (270)
487 PRK05595 replicative DNA helic 47.1 1.9E+02 0.004 32.8 11.8 45 173-224 204-249 (444)
488 PHA02518 ParA-like protein; Pr 46.9 31 0.00067 34.2 5.0 36 180-222 11-48 (211)
489 cd01983 Fer4_NifH The Fer4_Nif 46.8 39 0.00084 28.2 5.0 24 175-198 4-27 (99)
490 PRK13900 type IV secretion sys 46.6 28 0.0006 37.8 4.8 35 154-193 149-183 (332)
491 KOG0651|consensus 46.5 17 0.00038 38.5 3.0 43 168-220 164-206 (388)
492 PRK13766 Hef nuclease; Provisi 45.9 2.1E+02 0.0046 34.9 12.9 133 495-634 39-182 (773)
493 PRK10865 protein disaggregatio 45.8 59 0.0013 40.2 8.0 25 172-196 600-624 (857)
494 cd03418 GRX_GRXb_1_3_like Glut 45.8 92 0.002 24.9 6.9 55 516-570 1-57 (75)
495 cd03031 GRX_GRX_like Glutaredo 45.2 84 0.0018 29.8 7.2 55 516-570 1-66 (147)
496 cd02040 NifH NifH gene encodes 44.6 23 0.0005 36.8 3.8 25 180-211 11-35 (270)
497 PRK13531 regulatory ATPase Rav 44.5 33 0.00071 39.1 5.1 40 151-195 25-64 (498)
498 PRK13232 nifH nitrogenase redu 44.4 22 0.00048 37.2 3.6 26 179-211 10-35 (273)
499 KOG1133|consensus 44.2 2.3E+02 0.0049 33.7 11.5 82 514-596 629-721 (821)
500 TIGR01969 minD_arch cell divis 44.1 24 0.00052 36.1 3.8 19 180-198 11-29 (251)
No 1
>KOG0390|consensus
Probab=100.00 E-value=8.2e-111 Score=946.59 Aligned_cols=611 Identities=50% Similarity=0.776 Sum_probs=534.5
Q ss_pred hhHHHHHHHHhcCCCCCCcCCCCCCCCCccccccccccc--cccCCCCCCCCcccccCCCC-------------------
Q psy5647 61 SEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGA--RKALHDPTAPNALVLYTPPQ------------------- 119 (755)
Q Consensus 61 ~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~dp~~~~~lv~~~p~~------------------- 119 (755)
..+...+....++.|.+|...|....+....+|++.... .++++||.+..+.+.+.|-.
T Consensus 94 ~~~~~~~~~~~s~~~~~~~~~~~~~~~n~~~lg~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~h~~~~ 173 (776)
T KOG0390|consen 94 HVIIGGISGGLSSGKGIPEDLYVDTEGNLVELGVREDDEILGRALFDPLESIAIVDYEPVSNTFEKVHKTKEDCEHSFIW 173 (776)
T ss_pred hhhhcccccccccccccCccccccccccceecccccccchhhhhhhcchhhcccccCCcccchhhcccchhcccchhhhh
Confidence 566778888999999999998766332234566665543 68899999988888877611
Q ss_pred -------------------------------------CChhhhhcccccccc-eeeeeCchhhcCCcHHHHHHHHHHHHH
Q psy5647 120 -------------------------------------LSAHDLLKIDKDKIQ-VHVVVDPVLSNILRPHQREGVKFMYEC 161 (755)
Q Consensus 120 -------------------------------------~~~~~~~~~~~~~~~-~~v~v~p~l~~~LrphQ~egv~~l~~~ 161 (755)
...+..+..+.+... ++++++|.+...|||||+||++|||+|
T Consensus 174 ~~~ig~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~v~v~~dP~l~~~LrPHQ~EG~~FL~kn 253 (776)
T KOG0390|consen 174 KQDIGLVCRVCGCVLKEITKSSSDDSTYPLPPGFRSNLCDDSPMVASKDKFSGVHVVIDPLLKKILRPHQREGFEFLYKN 253 (776)
T ss_pred hhcccceeeeecccccccccccccccCCCCCCcccccccccccccCCCCcCccceEEecccHhhhcCchHHHHHHHHHhh
Confidence 111223333444443 889999999999999999999999999
Q ss_pred hhccccc-CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecC
Q psy5647 162 VTGVRIE-DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDG 239 (755)
Q Consensus 162 ~~g~~~~-~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~ 239 (755)
++|.... +.+|||+||+||+|||+|+|+++|+++++.|.++|++++.|||||++|+.||++||.||.+. ++..+.+++
T Consensus 254 l~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~ 333 (776)
T KOG0390|consen 254 LAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYS 333 (776)
T ss_pred hhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHHHHHhccccccceeeeec
Confidence 9997654 88999999999999999999999999999999999999999999999999999999999995 888888888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeec
Q psy5647 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319 (755)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTG 319 (755)
..+. ...+...+.......-...|+|+||++++.+...+....++++||||||++||.+|.++++|.++++++||+|||
T Consensus 334 ~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSG 412 (776)
T KOG0390|consen 334 TKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTG 412 (776)
T ss_pred ccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeC
Confidence 7665 445556666555556667899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCC
Q psy5647 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLP 399 (755)
Q Consensus 320 TPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP 399 (755)
||+||++.|||++++|++|++||+...|++.|+.|+.++++.+++..+... .+++++|..++++|++||+.+++.++||
T Consensus 413 Tp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP 491 (776)
T KOG0390|consen 413 TPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-EERLQELRELTNKFILRRTGDILLKYLP 491 (776)
T ss_pred CcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccchhhhhCC
Confidence 999999999999999999999999999999999999999999999998888 7779999999999999999999999999
Q ss_pred CceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhh-hhhhcCccchhhh-hhh
Q psy5647 400 VKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM-DKIQTGADGFENA-MNI 477 (755)
Q Consensus 400 ~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~-~~~~~~~~~~~~~-~~~ 477 (755)
++.+++|+|.+|+.|..+|..+++.. ....+.+ ..|..++.|+++||||.|+. .........+... ...
T Consensus 492 ~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~--------~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~ 562 (776)
T KOG0390|consen 492 GKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG--------YALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLL 562 (776)
T ss_pred CceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc--------chhhHHHHHHHHhcCHHhhcccccccccccccChHhhh
Confidence 99999999999999999999998875 4333332 27889999999999999994 3333332223221 111
Q ss_pred CCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHH
Q psy5647 478 LPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557 (755)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v 557 (755)
.+..+ .........|+|+.+|..++..+++....+++++++|++++|+++.+|+-+|+.++++||+|+.++|+++|
T Consensus 563 ~~~~~----~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~v 638 (776)
T KOG0390|consen 563 DPGKL----KLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLV 638 (776)
T ss_pred ccccc----ccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHH
Confidence 11111 22233445799999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647 558 ETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 558 ~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~ 636 (755)
+.||+ .+..+|||+|++|||+||||+||+|||+||++|||+++.|||+||||+||+|+|+||||+++||+||+||+||.
T Consensus 639 d~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~ 718 (776)
T KOG0390|consen 639 DTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQT 718 (776)
T ss_pred HhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHH
Confidence 99999 44459999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhCCchhhhccCCHHHHHhccccCCCCccccccccccccccC
Q psy5647 637 HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVN 686 (755)
Q Consensus 637 ~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~~~~~t~d~~~~~~~~~ 686 (755)
+|+.|++.|++..+...++|+.++++.+|.+..+++++||+...|.+|..
T Consensus 719 ~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~~~~~e~~~~~~~~~~~~ 768 (776)
T KOG0390|consen 719 HKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLELDTIVETHKLKKSKDCLL 768 (776)
T ss_pred HhhhhhheEEecccccccccchHHHHHHHhhhccccccchhhhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999976
No 2
>KOG0387|consensus
Probab=100.00 E-value=2.8e-106 Score=883.11 Aligned_cols=500 Identities=35% Similarity=0.590 Sum_probs=445.2
Q ss_pred eeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 137 v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
..||..+...|+|||++||+|||+.+ ..+.||||+||||||||+|+|+|+..+...+.. .+|+|||||+++
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~-----~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----~~paLIVCP~Ti 266 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELY-----CQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----TKPALIVCPATI 266 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHH-----hccCCCeecccccCccchhHHHHHHHHhhcccc----cCceEEEccHHH
Confidence 45788899999999999999999987 467899999999999999999999999877643 366999999999
Q ss_pred hHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHH-----HHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeC
Q psy5647 217 VKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN-----SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291 (755)
Q Consensus 217 l~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDE 291 (755)
+.||.+||++|+|. +.+..+++.....+..... ...-.........|+||||+.|+..-+.+..+.|+++|+||
T Consensus 267 i~qW~~E~~~w~p~-~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 267 IHQWMKEFQTWWPP-FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHHHHHHhCcc-eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecC
Confidence 99999999999997 4555554433211000000 00000011234579999999999999999999999999999
Q ss_pred CcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHH
Q psy5647 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKA 371 (755)
Q Consensus 292 aH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~ 371 (755)
||+|||++|+.+.+++++++.+|++||||||||+|.|||+|++|+.||.||+...|.+.|..||..|.+.+|++.....+
T Consensus 346 GH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 346 GHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhHHHHhcchhHhhc-cCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHH
Q psy5647 372 NERLEQLIGIVNRCLIRRTSALLSK-YLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450 (755)
Q Consensus 372 ~~~~~~L~~~l~~~~lRRt~~~v~~-~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~L 450 (755)
.+++..|+.+++||+|||+++++.. .||.|.|+|++|.||+.|+.+|+.|+++..+...+.+.. ..|..|..|
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~------~~l~Gi~iL 499 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKR------NCLSGIDIL 499 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCc------cceechHHH
Confidence 9999999999999999999999998 999999999999999999999999999999988887654 478889999
Q ss_pred HHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHH
Q psy5647 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 451 rk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l 530 (755)
|++||||.|+........ .+ ......++.||||.++..+|..+... |+||++|||..+|||+|
T Consensus 500 rkICnHPdll~~~~~~~~-----------~~-----~D~~g~~k~sGKm~vl~~ll~~W~kq-g~rvllFsqs~~mLdil 562 (923)
T KOG0387|consen 500 RKICNHPDLLDRRDEDEK-----------QG-----PDYEGDPKRSGKMKVLAKLLKDWKKQ-GDRVLLFSQSRQMLDIL 562 (923)
T ss_pred HhhcCCcccccCcccccc-----------cC-----CCcCCChhhcchHHHHHHHHHHHhhC-CCEEEEehhHHHHHHHH
Confidence 999999999865311100 00 01114578899999999999999854 78999999999999999
Q ss_pred HHHHH-hcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhc
Q psy5647 531 ERLSK-LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR 609 (755)
Q Consensus 531 ~~~L~-~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R 609 (755)
+.+|. ..||.|+|+||+++...|+++|++||++...+|||++|+|||.|+||++||+||+|||+|||++|.||..|+||
T Consensus 563 E~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawR 642 (923)
T KOG0387|consen 563 ESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWR 642 (923)
T ss_pred HHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHh
Confidence 99999 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCCC
Q psy5647 610 DGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEEN 670 (755)
Q Consensus 610 ~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~ 670 (755)
+||+|+|.||||++.|||||+||.||+.|+.|.+.++.+.+ ..+.|...+|.+||++...
T Consensus 643 iGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~-q~RfF~~~dl~dLFsl~~~ 702 (923)
T KOG0387|consen 643 IGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPE-QRRFFKGNDLHDLFSLKDF 702 (923)
T ss_pred hcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHH-HhhhcccccHHHHhCCCCC
Confidence 99999999999999999999999999999999999999875 4799999999999999873
No 3
>KOG0385|consensus
Probab=100.00 E-value=1.4e-100 Score=833.50 Aligned_cols=479 Identities=33% Similarity=0.560 Sum_probs=419.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
..|||||.+|++||...+ .++-+||||||||||||+|+|+++.++....... +|+||+||.|++.||.+||
T Consensus 166 g~lr~YQveGlnWLi~l~-----engingILaDEMGLGKTlQtIs~l~yl~~~~~~~----GPfLVi~P~StL~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYLKGRKGIP----GPFLVIAPKSTLDNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHH-----hcCcccEeehhcccchHHHHHHHHHHHHHhcCCC----CCeEEEeeHhhHHHHHHHH
Confidence 799999999999999887 5778899999999999999999999988754433 4589999999999999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHH
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~ 304 (755)
.+|+|+ +.++.+.|. ++++....+..+.. ..++|+|||||+..++.+.|....|.++||||||||||.+|..++
T Consensus 237 ~rf~P~-l~~~~~~Gd-k~eR~~~~r~~~~~----~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~ 310 (971)
T KOG0385|consen 237 KRFTPS-LNVVVYHGD-KEERAALRRDIMLP----GRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSK 310 (971)
T ss_pred HHhCCC-cceEEEeCC-HHHHHHHHHHhhcc----CCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHH
Confidence 999997 666666654 45555555554443 368999999999999999999999999999999999999999999
Q ss_pred HHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhH
Q psy5647 305 ALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNR 384 (755)
Q Consensus 305 al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~ 384 (755)
.++.+.+.+|++|||||+||||.|||+|++|+.|++|++..+|..+|......+ ..+...+|+.++.|
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~------------~~e~v~~Lh~vL~p 378 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEG------------DQELVSRLHKVLRP 378 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccccc------------CHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999998643222 24567899999999
Q ss_pred HHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhh
Q psy5647 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKI 464 (755)
Q Consensus 385 ~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~ 464 (755)
|++||.+.+|.+.||||.|.+++|.||+.|++.|..++...- ..+.+.. .......++.++.||||||||+|+.. +
T Consensus 379 FlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl--~~~n~~~-~~~k~kL~NI~mQLRKccnHPYLF~g-~ 454 (971)
T KOG0385|consen 379 FLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDL--DALNGEG-KGEKTKLQNIMMQLRKCCNHPYLFDG-A 454 (971)
T ss_pred HHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcc--hhhcccc-cchhhHHHHHHHHHHHhcCCccccCC-C
Confidence 999999999999999999999999999999999999886542 1222211 11345677888999999999999864 2
Q ss_pred hcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEE
Q psy5647 465 QTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRL 544 (755)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~l 544 (755)
+.+ ..+...+.++..||||.+|++||..+++ .|+|||||||++.+||+|+++|..+||.|+||
T Consensus 455 ePg----------------~pyttdehLv~nSGKm~vLDkLL~~Lk~-~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRi 517 (971)
T KOG0385|consen 455 EPG----------------PPYTTDEHLVTNSGKMLVLDKLLPKLKE-QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRL 517 (971)
T ss_pred CCC----------------CCCCcchHHHhcCcceehHHHHHHHHHh-CCCeEEEeHHHHHHHHHHHHHHHhcCceeEee
Confidence 111 1225567788999999999999999985 58999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEee
Q psy5647 545 DGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623 (755)
Q Consensus 545 dG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~ 623 (755)
||+|+.++|...|+.||. ++..||||+||+|||.||||++|++||+||.||||..|.||++|||||||+|+|.||||++
T Consensus 518 DGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit 597 (971)
T KOG0385|consen 518 DGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT 597 (971)
T ss_pred cCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec
Confidence 999999999999999999 6689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHhhhhCCc---hhhhccCCHHHHHhccccCCCC
Q psy5647 624 TGSIEEKMMQRQAHKKALSSCVVDCE---EDVARHFSMSELRSLFQLEENT 671 (755)
Q Consensus 624 ~gTiEEkI~~r~~~K~~l~~~vv~~~---~~~~~~~s~~el~~Lf~~~~~~ 671 (755)
.+||||+|++|+..|..|...|+.++ +......+.+++.+|..++.+.
T Consensus 598 entVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~ 648 (971)
T KOG0385|consen 598 ENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADP 648 (971)
T ss_pred cchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCchh
Confidence 99999999999999999999999987 2223346688888888777543
No 4
>KOG0384|consensus
Probab=100.00 E-value=4.5e-98 Score=848.94 Aligned_cols=562 Identities=30% Similarity=0.503 Sum_probs=458.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
+..||+||.+|++||..+| ..+.+||||||||||||+|+|+++.++...+...+| +|||+|.|.+.+|++|
T Consensus 368 g~~LRdyQLeGlNWl~~~W-----~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gp----flvvvplst~~~W~~e 438 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSW-----YKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGP----FLVVVPLSTITAWERE 438 (1373)
T ss_pred cchhhhhhcccchhHHHHH-----HhcccceehhhcCCCcchHHHHHHHHHHHhhhccCC----eEEEeehhhhHHHHHH
Confidence 4689999999999999998 478899999999999999999999999988866555 8999999999999999
Q ss_pred HHHHhCCCceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 224 ITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
|..|+ ...++++.|... .+.++..+.+.........++++||||+++..+...|..+.|.++++||||||||..++.
T Consensus 439 f~~w~--~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l 516 (1373)
T KOG0384|consen 439 FETWT--DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKL 516 (1373)
T ss_pred HHHHh--hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHH
Confidence 99999 366677766533 233333333333323345789999999999999999999999999999999999999999
Q ss_pred HHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhH
Q psy5647 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382 (755)
Q Consensus 303 ~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l 382 (755)
+..+..++..+|+++||||+||++.|||+|++|+.|+.|.++.+|...|.. ...+.+..|+..+
T Consensus 517 ~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------------~~e~~~~~L~~~L 580 (1373)
T KOG0384|consen 517 YESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------------ETEEQVRKLQQIL 580 (1373)
T ss_pred HHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc----------------hhHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998832 2345578899999
Q ss_pred hHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhh
Q psy5647 383 NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMD 462 (755)
Q Consensus 383 ~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~ 462 (755)
.|+|+||.+++|.+.||+|.|.++.|+||+.|+++|+.++..+. ..+..|..+.. .+.|+.++.||||||||+|+..
T Consensus 581 ~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~--~~LtKG~~g~~-~~lLNimmELkKccNHpyLi~g 657 (1373)
T KOG0384|consen 581 KPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNF--SALTKGAKGST-PSLLNIMMELKKCCNHPYLIKG 657 (1373)
T ss_pred hHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhH--HHHhccCCCCC-chHHHHHHHHHHhcCCccccCc
Confidence 99999999999999999999999999999999999999998664 56666655333 7889999999999999999965
Q ss_pred hhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEE
Q psy5647 463 KIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYV 542 (755)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~ 542 (755)
....-..++... .....-..++..||||.+|++||..++. +|+|||||||++.+||+|+++|..+||+|.
T Consensus 658 aee~~~~~~~~~---------~~d~~L~~lI~sSGKlVLLDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQ 727 (1373)
T KOG0384|consen 658 AEEKILGDFRDK---------MRDEALQALIQSSGKLVLLDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPFQ 727 (1373)
T ss_pred HHHHHHHhhhhc---------chHHHHHHHHHhcCcEEeHHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCcce
Confidence 322111111100 0011234578899999999999999995 589999999999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEE
Q psy5647 543 RLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRF 621 (755)
Q Consensus 543 ~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrl 621 (755)
||||++..+-|+.+|++||+ ++..|||||||+|||.||||..|++||+||+||||++|.||++|||||||++.|.||||
T Consensus 728 RLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRL 807 (1373)
T KOG0384|consen 728 RLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRL 807 (1373)
T ss_pred eccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEE
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCHHHHHHHHHHHHHHhHhhhhCCch-----hhhccCCHHHHHhccccCCCCcc-ccccccccccccCCc-------
Q psy5647 622 LSTGSIEEKMMQRQAHKKALSSCVVDCEE-----DVARHFSMSELRSLFQLEENTIS-DTHDKIKCSRCVNGI------- 688 (755)
Q Consensus 622 v~~gTiEEkI~~r~~~K~~l~~~vv~~~~-----~~~~~~s~~el~~Lf~~~~~~~~-~t~d~~~~~~~~~~~------- 688 (755)
||++|+||.|++|+..|+.|..+|+.... .....|+.+||.+|++|+...+- ++.+ -.-..|...+
T Consensus 808 VTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~en-e~s~~~e~DIDeIL~ra 886 (1373)
T KOG0384|consen 808 VTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEEN-EESKFCEMDIDEILERA 886 (1373)
T ss_pred ecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccc-ccccccccCHHHHHhhc
Confidence 99999999999999999999999986432 34578999999999998765432 2111 1112232221
Q ss_pred cc-CCCCCCCCCc-ccccccccccCCCCCCchHH---H-hhhcccccEEEeeccchhhhccccchhhHhhhcC
Q psy5647 689 QV-KPPPLESDCT-DDLSCWHHVTEKRWLVDPIL---K-HCWGAGVSFVFYQHSTKAEKSKVVTEEEEKEEEE 755 (755)
Q Consensus 689 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~l---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (755)
+. ...+++.... .-|++++. .|.+..++..+ + -.|+..| .++++...++||+.+|+||
T Consensus 887 e~~~t~~~~~~~a~e~ls~fkv-ad~~~dd~~~~~~~~didwd~ii--------pe~~r~~~~eeer~ke~ee 950 (1373)
T KOG0384|consen 887 ETRITEESDFMKASELLSQFKV-ADIKADDPADLEAERDIDWDRII--------PEEERERIEEEERLKELEE 950 (1373)
T ss_pred ccccccccccchhHHHHhhccc-cccccCChhhhhhhccCChhhhC--------CHHHHhcchhhhhHHHHHh
Confidence 11 1111111111 23566653 22221111111 1 2466555 8889999999999999875
No 5
>KOG1015|consensus
Probab=100.00 E-value=1.8e-97 Score=816.66 Aligned_cols=529 Identities=34% Similarity=0.610 Sum_probs=446.6
Q ss_pred ccccccceeeeeCchhhcCCcHHHHHHHHHHHHHhhcc----cccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCC
Q psy5647 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGV----RIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203 (755)
Q Consensus 128 ~~~~~~~~~v~v~p~l~~~LrphQ~egv~~l~~~~~g~----~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p 203 (755)
.|.+.....|.|+..|...|+|||..||+|||+|.... ....+.||||||.||||||+|+|+|+++++.....
T Consensus 650 ~deet~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~kl--- 726 (1567)
T KOG1015|consen 650 EDEETKEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKL--- 726 (1567)
T ss_pred chhhhccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhcc---
Confidence 33333445677889999999999999999999998642 23568999999999999999999999999987653
Q ss_pred CCCeEEEEeCCcchHhHHHHHHHHhCC-----CceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh-
Q psy5647 204 LIDKAIIVAPSSLVKNWCNEITKWLGG-----RVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA- 276 (755)
Q Consensus 204 ~~~~~LIV~P~sll~nW~~E~~kw~~~-----~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~- 276 (755)
..+++|||||.+++.||.+||.+|.++ .+.+..+..- ..+.+...+..|.... .|+|+.|++||...
T Consensus 727 g~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g------gVmIiGYdmyRnLa~ 800 (1567)
T KOG1015|consen 727 GFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG------GVMIIGYDMYRNLAQ 800 (1567)
T ss_pred CCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC------CEEEEehHHHHHHhc
Confidence 568899999999999999999999985 3444444443 3467777888887654 59999999999743
Q ss_pred --------------hhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCC
Q psy5647 277 --------------SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILG 342 (755)
Q Consensus 277 --------------~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~ 342 (755)
..+...++|+|||||||.|||..|.+++|+.+++++|||+|||||+||||.|||+|++|+.|++||
T Consensus 801 gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLG 880 (1567)
T KOG1015|consen 801 GRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLG 880 (1567)
T ss_pred ccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccccccc
Confidence 345567899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHH
Q psy5647 343 TAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422 (755)
Q Consensus 343 ~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~ 422 (755)
+..+|+++|.+||.+|++.+++..+...+..+.+.|+.++..|+.|+....+.++||||.++||.+.||+.|+.+|..|+
T Consensus 881 s~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 881 SIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred CcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHcCCC---cccccccHHHHHHHHHHHhCChhhhhhhhh------------------cCcc------------
Q psy5647 423 KSDAVRRTMKGGE---NTKLGMTALSSITSLKKLCNHPDLVMDKIQ------------------TGAD------------ 469 (755)
Q Consensus 423 ~~~~~~~~~~~~~---~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~------------------~~~~------------ 469 (755)
... . -.++. ..+.+...|..+..|+++++||+.+.-... ...+
T Consensus 961 ~h~-~---~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~ 1036 (1567)
T KOG1015|consen 961 DHL-T---GVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYT 1036 (1567)
T ss_pred hhc-c---ccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchh
Confidence 721 1 11111 113567789999999999999997631110 0000
Q ss_pred ---------------------c--------------------------hhhhhhhCCc---c-----------ccc-ccc
Q psy5647 470 ---------------------G--------------------------FENAMNILPT---G-----------YAA-SYK 487 (755)
Q Consensus 470 ---------------------~--------------------------~~~~~~~~~~---~-----------~~~-~~~ 487 (755)
+ .+..+.++.. + |.. ...
T Consensus 1037 ~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e 1116 (1567)
T KOG1015|consen 1037 KKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTE 1116 (1567)
T ss_pred hcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhh
Confidence 0 0000000000 0 000 000
Q ss_pred chhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh----------------------cCCcEEEEc
Q psy5647 488 SGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL----------------------RGYKYVRLD 545 (755)
Q Consensus 488 ~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~----------------------~g~~~~~ld 545 (755)
.......+|+||.+|.++|....+ -|+|+|||||+..+||+|+.+|.. .|..|.|||
T Consensus 1117 ~d~~v~~~SgKmiLLleIL~mcee-IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriD 1195 (1567)
T KOG1015|consen 1117 ADAEVLEHSGKMILLLEILRMCEE-IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLD 1195 (1567)
T ss_pred hhhhhhhcCcceehHHHHHHHHHH-hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEec
Confidence 111234679999999999998874 589999999999999999999973 377899999
Q ss_pred CCCCHHHHHHHHHHHcc--CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEee
Q psy5647 546 GSMTIKKRAKVVETFNK--TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623 (755)
Q Consensus 546 G~~~~~~R~~~v~~Fn~--~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~ 623 (755)
|+++..+|++++++||+ +-..++|||||+||+.||||.+|||||+||..|||..|.|++-|+||+||+|||+||||++
T Consensus 1196 Gst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1196 GSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred CcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 99999999999999999 4456789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCCCC
Q psy5647 624 TGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENT 671 (755)
Q Consensus 624 ~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~~ 671 (755)
.||+||+||.||..|++++.+|||.. ++.++++.+||.+||+|++++
T Consensus 1276 qGTmEeKIYkRQVTKqsls~RVVDeq-Qv~Rhy~~neLteLy~fep~~ 1322 (1567)
T KOG1015|consen 1276 QGTMEEKIYKRQVTKQSLSFRVVDEQ-QVERHYTMNELTELYTFEPDL 1322 (1567)
T ss_pred cccHHHHHHHHHHhHhhhhhhhhhHH-HHHHHhhHhhhHHHhhcCCcc
Confidence 99999999999999999999999975 789999999999999999763
No 6
>KOG0392|consensus
Probab=100.00 E-value=5.6e-93 Score=802.66 Aligned_cols=511 Identities=32% Similarity=0.486 Sum_probs=431.7
Q ss_pred eeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC--CCCCCCCCeEEEEeCCc
Q psy5647 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG--PLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 138 ~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~--~~~~p~~~~~LIV~P~s 215 (755)
.++-.+...||.||.|||+|+.-.- ...-.|||||+||||||+|+|+++..-.... ....-...|.|||||++
T Consensus 967 ~Ip~pI~a~LRkYQqEGVnWLaFLn-----ky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT 1041 (1549)
T KOG0392|consen 967 KIPVPISAKLRKYQQEGVNWLAFLN-----KYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST 1041 (1549)
T ss_pred ccccchhHHHHHHHHhccHHHHHHH-----HhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch
Confidence 3455577899999999999985432 3445679999999999999999987543332 22222234689999999
Q ss_pred chHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCccc
Q psy5647 216 LVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 216 ll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~l 295 (755)
|..+|+.|+.+|+|. +.++.+.|+..... .++.-. ..++|+|+||+.+|++.+.+.+..|.++|+||+|-+
T Consensus 1042 LtGHW~~E~~kf~pf-L~v~~yvg~p~~r~--~lR~q~------~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1042 LTGHWKSEVKKFFPF-LKVLQYVGPPAERR--ELRDQY------KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred hhhHHHHHHHHhcch-hhhhhhcCChHHHH--HHHhhc------cccceEEeeHHHHHHHHHHHHhcccceEEecCccee
Confidence 999999999999997 66666666543321 122211 235899999999999999999999999999999999
Q ss_pred CCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHH
Q psy5647 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375 (755)
Q Consensus 296 Kn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~ 375 (755)
||..++.+++++++++.+|++||||||||++.|||||++||.||++|+...|..+|.+||...+++.+++.+.+.+..++
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAl 1192 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLAL 1192 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHH--HHHcCCCccc--ccccHHHHHHHHH
Q psy5647 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVR--RTMKGGENTK--LGMTALSSITSLK 451 (755)
Q Consensus 376 ~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~--~~~~~~~~~~--~~~~~l~~i~~Lr 451 (755)
+.|++.+-|||+||.|++|.++||||+.+-.+|+|+|.|+++|+.|..+.+.. ....++.... ...++|+.+..+|
T Consensus 1193 eaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlr 1272 (1549)
T KOG0392|consen 1193 EALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLR 1272 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998763221 1111222111 1567899999999
Q ss_pred HHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhcc-------------CCCEEE
Q psy5647 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT-------------TDDKIV 518 (755)
Q Consensus 452 k~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~-------------~~~Kvl 518 (755)
|+||||.|+....- ..+..... ..+.....-..+..|+|+..|.++|..+--. .++|++
T Consensus 1273 KLcnHpaLvlt~~h---p~la~i~~-----~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiL 1344 (1549)
T KOG0392|consen 1273 KLCNHPALVLTPVH---PDLAAIVS-----HLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRIL 1344 (1549)
T ss_pred HhcCCcceeeCCCc---chHHHHHH-----HHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeE
Confidence 99999999865210 01111100 0011122233468899999999999887422 468999
Q ss_pred EEEechhHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC
Q psy5647 519 LVSNYTQTLDLFERLSKLR---GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW 595 (755)
Q Consensus 519 IFs~~~~~ld~l~~~L~~~---g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W 595 (755)
||||+..++|++++-|-+. .+.|.|+||++++.+|++++++||+++...|+|++|.+||.||||+||++|||++.||
T Consensus 1345 IFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW 1424 (1549)
T KOG0392|consen 1345 IFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1424 (1549)
T ss_pred EeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC
Confidence 9999999999999877654 5678899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccc-cCCC
Q psy5647 596 NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ-LEEN 670 (755)
Q Consensus 596 Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~-~~~~ 670 (755)
||.+|.|||+|+||+||||.|.||||++.||+||||+..|..|+..++.|++..+.....+..++|-+||+ ++.+
T Consensus 1425 NPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~~~~gd 1500 (1549)
T KOG0392|consen 1425 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFTVLDGD 1500 (1549)
T ss_pred CchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhcccCCc
Confidence 99999999999999999999999999999999999999999999999999999887788899999999999 5444
No 7
>KOG0389|consensus
Probab=100.00 E-value=4.4e-89 Score=746.60 Aligned_cols=483 Identities=31% Similarity=0.486 Sum_probs=400.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.+|+|||.-||+||+-.+ ..+-+||||||||||||+|+||++..|.+.|.. +|.|||||+|++.||.+||
T Consensus 398 i~LkdYQlvGvNWL~Lly-----k~~l~gILADEMGLGKTiQvIaFlayLkq~g~~-----gpHLVVvPsSTleNWlrEf 467 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLY-----KKKLNGILADEMGLGKTIQVIAFLAYLKQIGNP-----GPHLVVVPSSTLENWLREF 467 (941)
T ss_pred CcccchhhhhHHHHHHHH-----HccccceehhhccCcchhHHHHHHHHHHHcCCC-----CCcEEEecchhHHHHHHHH
Confidence 469999999999997655 456677999999999999999999999988863 3479999999999999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh---hhhhhhcCCccEEEEeCCcccCCCccH
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRS---HASVLHKNEVGLVLCDEGHRLKNCESQ 301 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~---~~~~l~~~~~~lvIiDEaH~lKn~~s~ 301 (755)
.||+|. +.+..++|.. .+ ++.++......+ ..++|++|||..+.. +...|...+|++||.||||.|||..|.
T Consensus 468 ~kwCPs-l~Ve~YyGSq-~E-R~~lR~~i~~~~--~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se 542 (941)
T KOG0389|consen 468 AKWCPS-LKVEPYYGSQ-DE-RRELRERIKKNK--DDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE 542 (941)
T ss_pred HHhCCc-eEEEeccCcH-HH-HHHHHHHHhccC--CCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH
Confidence 999997 7777777764 22 334444444333 478999999999864 567888899999999999999999999
Q ss_pred HHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCC-hHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHH
Q psy5647 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGT-AQEFRKQYETPILRGQDSCASDAERTKANERLEQLIG 380 (755)
Q Consensus 302 ~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~-~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~ 380 (755)
+|+.|..+++++||+|||||+||||.||+||+.|+.|..|.+ ..++...|..-- ..+...+.....++++.+...
T Consensus 543 Ry~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~----~~d~d~e~~~l~qerIsrAK~ 618 (941)
T KOG0389|consen 543 RYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKK----TSDGDIENALLSQERISRAKT 618 (941)
T ss_pred HHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccC----CccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875 456666664321 114445556667788999999
Q ss_pred hHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhh
Q psy5647 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460 (755)
Q Consensus 381 ~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~ 460 (755)
++.||+|||.+++|.+.||||..++.+|.|+..|+.+|..+++............ .....-..++.|||++|||-|+
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~n---s~~~~~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKN---SELKSGNVLMQLRKAANHPLLF 695 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccc---cccccchHHHHHHHHhcChhHH
Confidence 9999999999999999999999999999999999999999976552211111111 1111145789999999999998
Q ss_pred hhhhhcC-----------ccc---------hhh-----------hhhhCCccccccccchhhhHHhhhhHHHHHHHHHHH
Q psy5647 461 MDKIQTG-----------ADG---------FEN-----------AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509 (755)
Q Consensus 461 ~~~~~~~-----------~~~---------~~~-----------~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~ 509 (755)
....... ... +|. ....++. ...+......+-.|||+..|..||..+
T Consensus 696 R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~--~~~f~L~d~~~mdSgK~r~L~~LLp~~ 773 (941)
T KOG0389|consen 696 RSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRH--LSKFQLKDDLWMDSGKCRKLKELLPKI 773 (941)
T ss_pred HHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCC--CcccccCCchhhhhhhHhHHHHHHHHH
Confidence 6432211 000 000 0011110 011122334456799999999999999
Q ss_pred hccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEE
Q psy5647 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLV 589 (755)
Q Consensus 510 ~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI 589 (755)
+.. |+|||||||||++||+|+.+|...|+.|+|+||+|....||.+|+.||.+.+.+|||+||+|||.||||++||+||
T Consensus 774 k~~-G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI 852 (941)
T KOG0389|consen 774 KKK-GDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI 852 (941)
T ss_pred hhc-CCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE
Confidence 865 7999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhh
Q psy5647 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652 (755)
Q Consensus 590 ~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~ 652 (755)
++|.++||-+|.||.+||||.||+|+|+|||||+++||||.|++.+..|..|-..+.++++..
T Consensus 853 ihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~ 915 (941)
T KOG0389|consen 853 IHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGV 915 (941)
T ss_pred EeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccch
Confidence 999999999999999999999999999999999999999999999999999999998876543
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-88 Score=801.45 Aligned_cols=482 Identities=31% Similarity=0.507 Sum_probs=411.3
Q ss_pred eCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 139 VDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 139 v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
.|+.+...|||||.+|++||+.++ ..+.|||||||||||||+|+|+++..+...... .+++|||||.+++.
T Consensus 162 qP~~i~~~Lr~YQleGlnWLi~l~-----~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~----~gp~LIVvP~SlL~ 232 (1033)
T PLN03142 162 QPSCIKGKMRDYQLAGLNWLIRLY-----ENGINGILADEMGLGKTLQTISLLGYLHEYRGI----TGPHMVVAPKSTLG 232 (1033)
T ss_pred CChHhccchHHHHHHHHHHHHHHH-----hcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCC----CCCEEEEeChHHHH
Confidence 355667899999999999999876 467889999999999999999999988765432 35589999999999
Q ss_pred hHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCC
Q psy5647 219 NWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 219 nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
||.+||.+|+|. +.++.+.|... .+......... ...++|+||||+++..+...|....|++|||||||++||.
T Consensus 233 nW~~Ei~kw~p~-l~v~~~~G~~~-eR~~~~~~~~~----~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~ 306 (1033)
T PLN03142 233 NWMNEIRRFCPV-LRAVKFHGNPE-ERAHQREELLV----AGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNE 306 (1033)
T ss_pred HHHHHHHHHCCC-CceEEEeCCHH-HHHHHHHHHhc----ccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCH
Confidence 999999999986 45555555432 22222222221 1357899999999999999999999999999999999999
Q ss_pred ccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 299 ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 299 ~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.|++++++..+++.+||+|||||++|++.|||+|++||.|+.|++...|..+|..+... ...+.+..|
T Consensus 307 ~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~------------~~~e~i~~L 374 (1033)
T PLN03142 307 NSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN------------DQQEVVQQL 374 (1033)
T ss_pred HHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc------------chHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999763211 123557789
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
+.++.+|++||++.++...||++.+.+++|.||+.|+++|+.++.... ..+..+. .....+..++.||++|+||+
T Consensus 375 ~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~--~~l~~g~---~~~~LlnilmqLRk~cnHP~ 449 (1033)
T PLN03142 375 HKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL--DVVNAGG---ERKRLLNIAMQLRKCCNHPY 449 (1033)
T ss_pred HHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHH--HHHhccc---cHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999986542 2222222 23457788899999999999
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g 538 (755)
|+...... ..+......+..|+|+.+|+.+|..+.. .++||||||+|+.++++|+++|..+|
T Consensus 450 L~~~~ep~-----------------~~~~~~e~lie~SgKl~lLdkLL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g 511 (1033)
T PLN03142 450 LFQGAEPG-----------------PPYTTGEHLVENSGKMVLLDKLLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRG 511 (1033)
T ss_pred hhhccccc-----------------CcccchhHHhhhhhHHHHHHHHHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcC
Confidence 97532100 0012234567789999999999999985 58999999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
+.|++|||+++..+|++++++||+ ++..+|||+||+|||+||||+.|++||+||+||||+.+.||+||+||+||+++|+
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~ 591 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQ 591 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEE
Confidence 999999999999999999999998 5567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchh-hhccCCHHHHHhccccCCC
Q psy5647 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEED-VARHFSMSELRSLFQLEEN 670 (755)
Q Consensus 618 Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~-~~~~~s~~el~~Lf~~~~~ 670 (755)
||||++.|||||+|++++..|..|...|++.+.. ....++.+||.+||.++.+
T Consensus 592 VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 592 VFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 9999999999999999999999999999986532 2257899999999987654
No 9
>KOG0391|consensus
Probab=100.00 E-value=3.7e-89 Score=761.87 Aligned_cols=510 Identities=30% Similarity=0.543 Sum_probs=435.4
Q ss_pred eeeeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 135 VHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 135 ~~v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
|.+.|+-.|.+.||.||..|+.||...+ .++-+||||||||||||+|+|+++.++......++| .|||||+
T Consensus 604 VktpvPsLLrGqLReYQkiGLdWLatLY-----eknlNGILADEmGLGKTIQtISllAhLACeegnWGP----HLIVVpT 674 (1958)
T KOG0391|consen 604 VKTPVPSLLRGQLREYQKIGLDWLATLY-----EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGP----HLIVVPT 674 (1958)
T ss_pred eccCchHHHHHHHHHHHHhhHHHHHHHH-----HhcccceehhhhcccchhHHHHHHHHHHhcccCCCC----ceEEeec
Confidence 4445667789999999999999998877 577889999999999999999999999988777776 6999999
Q ss_pred cchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcc
Q psy5647 215 SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR 294 (755)
Q Consensus 215 sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~ 294 (755)
+++-||+-||++|+|+ ++++.|+|..++ +..+-+.|+. ...++|.||||..+-.+...|....|.++|+||||+
T Consensus 675 sviLnWEMElKRwcPg-lKILTYyGs~kE-rkeKRqgW~k----PnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 675 SVILNWEMELKRWCPG-LKILTYYGSHKE-RKEKRQGWAK----PNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQN 748 (1958)
T ss_pred hhhhhhhHHHhhhCCc-ceEeeecCCHHH-HHHHhhcccC----CCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhh
Confidence 9999999999999998 788888876443 3344444433 356899999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 295 LKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 295 lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
|||..|++++++..+++.+|++|||||+||++.|||+|++||.|..|.+...|+.||.+|+..-... ...-....
T Consensus 749 IKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEg-----sqeyn~kl 823 (1958)
T KOG0391|consen 749 IKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEG-----SQEYNHKL 823 (1958)
T ss_pred hcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhccc-----chhhchHH
Confidence 9999999999999999999999999999999999999999999999999999999999996432211 12223566
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
+.+|++++.+|+|||+|.+|.+.||.|+|+||+|.||.-|+.+|+.|+.....+..+..| ..+++++.++.|||+|
T Consensus 824 V~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSG----hfmsVlnilmqLrKvC 899 (1958)
T KOG0391|consen 824 VIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSG----HFMSVLNILMQLRKVC 899 (1958)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcC----chhHHHHHHHHHHHHc
Confidence 789999999999999999999999999999999999999999999999887777777665 4677899999999999
Q ss_pred CChhhhhhhhhc--------------------------Cc------------------------------c---------
Q psy5647 455 NHPDLVMDKIQT--------------------------GA------------------------------D--------- 469 (755)
Q Consensus 455 nhp~l~~~~~~~--------------------------~~------------------------------~--------- 469 (755)
|||.|+...-.. .. +
T Consensus 900 NHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~ 979 (1958)
T KOG0391|consen 900 NHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRG 979 (1958)
T ss_pred CCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCC
Confidence 999998321000 00 0
Q ss_pred --------c--h-------------h---------------------------hhh---h--------------------
Q psy5647 470 --------G--F-------------E---------------------------NAM---N-------------------- 476 (755)
Q Consensus 470 --------~--~-------------~---------------------------~~~---~-------------------- 476 (755)
+ | + ..+ +
T Consensus 980 rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~sv 1059 (1958)
T KOG0391|consen 980 RPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSV 1059 (1958)
T ss_pred CCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccce
Confidence 0 0 0 000 0
Q ss_pred ---------------------------------------hCC-------------------cccccc-------------
Q psy5647 477 ---------------------------------------ILP-------------------TGYAAS------------- 485 (755)
Q Consensus 477 ---------------------------------------~~~-------------------~~~~~~------------- 485 (755)
+.+ ..+...
T Consensus 1060 l~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl 1139 (1958)
T KOG0391|consen 1060 LQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERL 1139 (1958)
T ss_pred eeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHH
Confidence 000 000000
Q ss_pred ----------ccc-------------------------------------------------------------------
Q psy5647 486 ----------YKS------------------------------------------------------------------- 488 (755)
Q Consensus 486 ----------~~~------------------------------------------------------------------- 488 (755)
+..
T Consensus 1140 ~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~ 1219 (1958)
T KOG0391|consen 1140 DRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSH 1219 (1958)
T ss_pred HHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccch
Confidence 000
Q ss_pred --------------------------------hhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 489 --------------------------------GKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 489 --------------------------------~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
...+--.+||++.|.-||+.++.. |++||||+|++.|||+|+.+|..
T Consensus 1220 r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~e-ghRvLIfTQMtkmLDVLeqFLny 1298 (1958)
T KOG0391|consen 1220 RMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSE-GHRVLIFTQMTKMLDVLEQFLNY 1298 (1958)
T ss_pred HHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhc-CceEEehhHHHHHHHHHHHHHhh
Confidence 000000189999999999999854 89999999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
+||-|+||||+++.++|+.+.++||.+..+|+|++||+.||+||||++|++|||||.||||..|.||-+|||||||+++|
T Consensus 1299 HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDV 1378 (1958)
T KOG0391|consen 1299 HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 1378 (1958)
T ss_pred cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCC
Q psy5647 617 FVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~ 669 (755)
+|||||+..||||+|+.+...|..|-+.++++++-....|+..+++|||....
T Consensus 1379 HIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1379 HIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred EEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 99999999999999999999999999999999988888999999999998743
No 10
>KOG0388|consensus
Probab=100.00 E-value=6.6e-85 Score=701.07 Aligned_cols=481 Identities=32% Similarity=0.551 Sum_probs=407.8
Q ss_pred eeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 137 v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
|..|..+..+|+.||..|++||..|+ ..+-+||||||||||||+|+|+++.+|......++| +|||+|+|+
T Consensus 558 V~qPkil~ctLKEYQlkGLnWLvnlY-----dqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGP----FLVVtpaSt 628 (1185)
T KOG0388|consen 558 VPQPKILKCTLKEYQLKGLNWLVNLY-----DQGINGILADEMGLGKTVQSISVLAHLAETHNIWGP----FLVVTPAST 628 (1185)
T ss_pred ccCchhhhhhhHHHhhccHHHHHHHH-----HccccceehhhhccchhHHHHHHHHHHHHhccCCCc----eEEeehHHH
Confidence 44456678999999999999999998 567788999999999999999999999988876666 899999999
Q ss_pred hHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHH---HHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCc
Q psy5647 217 VKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM---QTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293 (755)
Q Consensus 217 l~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH 293 (755)
+.||++||.+|+|. +.++.+-|+..+. ..+..|+ ..+.+...++|+||||.++-.+...|...+|.++|+|||+
T Consensus 629 L~NWaqEisrFlP~-~k~lpywGs~~eR--kiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQ 705 (1185)
T KOG0388|consen 629 LHNWAQEISRFLPS-FKVLPYWGSPSER--KILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQ 705 (1185)
T ss_pred HhHHHHHHHHhCcc-ceeecCcCChhhh--HHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHH
Confidence 99999999999997 7888887765432 2233332 2244557789999999999999999999999999999999
Q ss_pred ccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 294 ~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
-||.+.|.+++.|.+++|+.|++||||||||+..|||+|++|+.|.+|.+..+|.+||..-|...-.... ....+
T Consensus 706 AIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~-----tlneq 780 (1185)
T KOG0388|consen 706 AIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT-----TLNEQ 780 (1185)
T ss_pred HhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC-----CcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999987765433322 24467
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
.+.+|+.++.||||||.+++|...|..|++..|+|+||.-|+.+|+.+..+-. .......++.|||+
T Consensus 781 qL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS-------------~~E~~~~vmQlrKV 847 (1185)
T KOG0388|consen 781 QLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS-------------SMEMENLVMQLRKV 847 (1185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh-------------HHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999998854332 11233477899999
Q ss_pred hCChhhhhhhhhc---------------------------------------------------------Ccc-------
Q psy5647 454 CNHPDLVMDKIQT---------------------------------------------------------GAD------- 469 (755)
Q Consensus 454 ~nhp~l~~~~~~~---------------------------------------------------------~~~------- 469 (755)
||||+|+...... +..
T Consensus 848 CNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~ 927 (1185)
T KOG0388|consen 848 CNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLR 927 (1185)
T ss_pred cCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhccc
Confidence 9999998421100 000
Q ss_pred --------ch-----hhhh-----hh-CCc-----------------------cccc----------c------------
Q psy5647 470 --------GF-----ENAM-----NI-LPT-----------------------GYAA----------S------------ 485 (755)
Q Consensus 470 --------~~-----~~~~-----~~-~~~-----------------------~~~~----------~------------ 485 (755)
++ +... .. .|. .|.+ .
T Consensus 928 l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~ 1007 (1185)
T KOG0388|consen 928 LSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENR 1007 (1185)
T ss_pred ceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCcccc
Confidence 00 0000 00 000 0000 0
Q ss_pred ---------ccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHH
Q psy5647 486 ---------YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKV 556 (755)
Q Consensus 486 ---------~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~ 556 (755)
..+....+..|||+.+|+.||..+++ .|++||+|.|++.|+|+|+++|..+||.|.|+||+....+|..+
T Consensus 1008 ~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~ 1086 (1185)
T KOG0388|consen 1008 HIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDV 1086 (1185)
T ss_pred CcccccceecCcHHhhhccccceeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHH
Confidence 00112235569999999999999996 48999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647 557 VETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 557 v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~ 636 (755)
|..|+. ++.||||+||+|||.||||++|++|||||.+|||..+.|||+|+||.||+++|+||||++.|||||+|.+|+.
T Consensus 1087 vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~ 1165 (1185)
T KOG0388|consen 1087 VRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERAN 1165 (1185)
T ss_pred HhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhh
Confidence 999998 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhCCc
Q psy5647 637 HKKALSSCVVDCE 649 (755)
Q Consensus 637 ~K~~l~~~vv~~~ 649 (755)
.|..+...|+.++
T Consensus 1166 qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1166 QKDEVQQMVMHGN 1178 (1185)
T ss_pred hHHHHHHHHHcCC
Confidence 9999999998875
No 11
>KOG0386|consensus
Probab=100.00 E-value=6e-82 Score=705.18 Aligned_cols=468 Identities=32% Similarity=0.539 Sum_probs=406.5
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
+++|++||+.|++||...+ .++-++|||||||||||+|+|+++.+++......+| .|||||.+++.||..|
T Consensus 392 GG~Lk~YQl~GLqWmVSLy-----NNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP----~LvivPlstL~NW~~E 462 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLY-----NNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP----FLIIVPLSTLVNWSSE 462 (1157)
T ss_pred CCCCchhhhhhhHHHhhcc-----CCCcccccchhcccchHHHHHHHHHHHHHHcccCCC----eEEeccccccCCchhh
Confidence 6899999999999999876 577889999999999999999999999987766555 7999999999999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHH
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~ 303 (755)
|.+|.|. +..+.+.|. +..+ ..+..-... .+++|++|||+-+..+...|.++.|.++||||+||+||..++.+
T Consensus 463 f~kWaPS-v~~i~YkGt-p~~R-~~l~~qir~----gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt 535 (1157)
T KOG0386|consen 463 FPKWAPS-VQKIQYKGT-PQQR-SGLTKQQRH----GKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLT 535 (1157)
T ss_pred ccccccc-eeeeeeeCC-HHHH-hhHHHHHhc----ccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHH
Confidence 9999997 555555543 3333 233322221 46899999999999999999999999999999999999999999
Q ss_pred HHHH-ccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCC-CCCCHHHHHHHHHHHHHHHHh
Q psy5647 304 QALM-GLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQD-SCASDAERTKANERLEQLIGI 381 (755)
Q Consensus 304 ~al~-~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~-~~~~~~~~~~~~~~~~~L~~~ 381 (755)
..+. ...+.+|++|||||+||++.|+|+|++|+-|.+|.+...|..||..|+..... ...++++... .+.+|+.+
T Consensus 536 ~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlL---IIrRLHkV 612 (1157)
T KOG0386|consen 536 DTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLL---IIRRLHKV 612 (1157)
T ss_pred HHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHH---HHHHHHHh
Confidence 9998 67999999999999999999999999999999999999999999999987553 5556655544 45678999
Q ss_pred HhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhh
Q psy5647 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461 (755)
Q Consensus 382 l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~ 461 (755)
+.||++||.+++|.+.||.|.+.++.|.||..|+.+|..+.+..... ..+....+.....+..++.|||+||||+++.
T Consensus 613 LRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~--~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~ 690 (1157)
T KOG0386|consen 613 LRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL--KDTAKGKKGYKPLFNTIMQLRKLCNHPYLFA 690 (1157)
T ss_pred hhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCC--cCchhccccchhhhhHhHHHHHhcCCchhhh
Confidence 99999999999999999999999999999999999999986543211 0111122345567888999999999999984
Q ss_pred hhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcE
Q psy5647 462 DKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKY 541 (755)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~ 541 (755)
.... .+...+.. ..++..|||+.+|+++|..+++ .|++|++|++.|+.+++++.+|..++++|
T Consensus 691 ~ve~---------------~~~~~~~~-~dL~R~sGKfELLDRiLPKLka-tgHRVLlF~qMTrlmdimEdyL~~~~~kY 753 (1157)
T KOG0386|consen 691 NVEN---------------SYTLHYDI-KDLVRVSGKFELLDRILPKLKA-TGHRVLLFSQMTRLMDILEDYLQIREYKY 753 (1157)
T ss_pred hhcc---------------ccccccCh-hHHHHhccHHHHHHhhhHHHHh-cCcchhhHHHHHHHHHHHHHHHhhhhhhe
Confidence 3211 11111122 4578899999999999999996 58999999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEE
Q psy5647 542 VRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620 (755)
Q Consensus 542 ~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyr 620 (755)
.|+||++...+|..+++.||. ++..|+||+|++|||.|+||+.|++||+||++|||..+.||.+|+|||||++.|.|+|
T Consensus 754 lRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 754 LRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCHHHHHHHHHHHHHHhHhhhhCCc
Q psy5647 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCE 649 (755)
Q Consensus 621 lv~~gTiEEkI~~r~~~K~~l~~~vv~~~ 649 (755)
+++.+++||+|+.++..|..+.+.|+..+
T Consensus 834 l~tv~sveE~il~~a~~Kl~~d~kviqag 862 (1157)
T KOG0386|consen 834 LITVNSVEEKILAEAFYKLDVDGKVIQAG 862 (1157)
T ss_pred eehhhHHHHHHHHHHHHhcCchHhhhhcc
Confidence 99999999999999999999999998765
No 12
>KOG1016|consensus
Probab=100.00 E-value=2.3e-80 Score=669.83 Aligned_cols=527 Identities=32% Similarity=0.583 Sum_probs=429.3
Q ss_pred eeeeeCchhhcCCcHHHHHHHHHHHHHhhcc----cccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEE
Q psy5647 135 VHVVVDPVLSNILRPHQREGVKFMYECVTGV----RIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210 (755)
Q Consensus 135 ~~v~v~p~l~~~LrphQ~egv~~l~~~~~g~----~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LI 210 (755)
..+.+-|.++..|+|||+-||+|||+..... +.+.+.||||||.||||||+|+|+|+-.+++..+ ++++|+
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~-----AKtVL~ 317 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK-----AKTVLV 317 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc-----cceEEE
Confidence 3566789999999999999999999977431 2367899999999999999999999999998764 578999
Q ss_pred EeCCcchHhHHHHHHHHhCC----------CceEEEecCCC--HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh---
Q psy5647 211 VAPSSLVKNWCNEITKWLGG----------RVAALPIDGGS--KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH--- 275 (755)
Q Consensus 211 V~P~sll~nW~~E~~kw~~~----------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~--- 275 (755)
|+|-..+.||..||..|.|. .+.++.+..+. -..+.+.+..|.... +|+++.|++||..
T Consensus 318 ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~G------GVlLvGYemfRLL~lk 391 (1387)
T KOG1016|consen 318 IVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTG------GVLLVGYEMFRLLILK 391 (1387)
T ss_pred EEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccC------CEEEehHHHHHHHHHh
Confidence 99999999999999999874 13444554443 334555666776654 5999999999863
Q ss_pred -----------------------------------hhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecC
Q psy5647 276 -----------------------------------ASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320 (755)
Q Consensus 276 -----------------------------------~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGT 320 (755)
...|...++|+|||||+|||||..+.++.+|..++++|||.|||-
T Consensus 392 ~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGY 471 (1387)
T KOG1016|consen 392 TLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGY 471 (1387)
T ss_pred cccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEecc
Confidence 123556789999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCC
Q psy5647 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPV 400 (755)
Q Consensus 321 PiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~ 400 (755)
|+||+|.|||+|++|++|.+||+..+|...|+.||..|+..+++..+...+..+.+.|+.++..|+.||+...+.+.||.
T Consensus 472 PLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~ 551 (1387)
T KOG1016|consen 472 PLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPE 551 (1387)
T ss_pred ccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchh--------
Q psy5647 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFE-------- 472 (755)
Q Consensus 401 k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~-------- 472 (755)
|.|+|+.+++|..|+++|+.|+..... ... .......+.|.++..--|++|||+.++..++.....-+
T Consensus 552 k~EyViLvr~s~iQR~LY~~Fm~d~~r--~~~--~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~ 627 (1387)
T KOG1016|consen 552 KKEYVILVRKSQIQRQLYRNFMLDAKR--EIA--ANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEM 627 (1387)
T ss_pred ccceEEEEeHHHHHHHHHHHHHHHHHH--hhc--cccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHH
Confidence 999999999999999999999753321 111 11123456788888889999999999876654211100
Q ss_pred ---hhhhh------CCcccc------------------------ccccchh------------------hhHHhhhhHHH
Q psy5647 473 ---NAMNI------LPTGYA------------------------ASYKSGK------------------LLIELSAKLMV 501 (755)
Q Consensus 473 ---~~~~~------~~~~~~------------------------~~~~~~~------------------~~~~~S~Kl~~ 501 (755)
..... .+.+-. ..+.... ...+.+.|+..
T Consensus 628 ~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~ 707 (1387)
T KOG1016|consen 628 KFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVI 707 (1387)
T ss_pred hhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEE
Confidence 00000 000000 0000000 01112233333
Q ss_pred HHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc------------------CCcEEEEcCCCCHHHHHHHHHHHccC
Q psy5647 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR------------------GYKYVRLDGSMTIKKRAKVVETFNKT 563 (755)
Q Consensus 502 L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~------------------g~~~~~ldG~~~~~~R~~~v~~Fn~~ 563 (755)
+.+++..-- ..|+|+||||+...+||+|+++|.++ ...|.++||+++..+|.+++++||+.
T Consensus 708 ~~~~~des~-~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e 786 (1387)
T KOG1016|consen 708 SLEILDEST-QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSE 786 (1387)
T ss_pred EEeeecccc-ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCC
Confidence 333333221 34789999999999999999999865 34689999999999999999999996
Q ss_pred CCce-EEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhH
Q psy5647 564 SNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALS 642 (755)
Q Consensus 564 ~~~~-v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~ 642 (755)
.+.. .||+|++||..||||++||++|+||..|||..+.||.+|++|+||+|+|+||||++..|+|.+||+||+.|++++
T Consensus 787 ~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGms 866 (1387)
T KOG1016|consen 787 PGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMS 866 (1387)
T ss_pred CCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccch
Confidence 6654 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCchhhhccCCHHHHHhccccCCCCcccccccc
Q psy5647 643 SCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKI 679 (755)
Q Consensus 643 ~~vv~~~~~~~~~~s~~el~~Lf~~~~~~~~~t~d~~ 679 (755)
++|||+- +...+||..||..|+.+.+ ...++|+..
T Consensus 867 dRvVDd~-np~an~s~Ke~enLl~~~e-a~~~~~~~v 901 (1387)
T KOG1016|consen 867 DRVVDDA-NPDANISQKELENLLMYDE-AQDVNHDKV 901 (1387)
T ss_pred hhhhccc-CccccccHHHHHHHhhhhh-cccCccccc
Confidence 9999986 4567999999999998865 223455443
No 13
>KOG1002|consensus
Probab=100.00 E-value=7.5e-76 Score=611.35 Aligned_cols=499 Identities=28% Similarity=0.403 Sum_probs=401.7
Q ss_pred eCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 139 VDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 139 v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
.|..+.-.|.|||+||+.|+..... +...|||||||||+|||+|+|+++..-.. . .++|||||...+.
T Consensus 177 qP~dlii~LL~fQkE~l~Wl~~QE~----Ss~~GGiLADEMGMGKTIQtIaLllae~~----r----a~tLVvaP~VAlm 244 (791)
T KOG1002|consen 177 QPDDLIIPLLPFQKEGLAWLTSQEE----SSVAGGILADEMGMGKTIQTIALLLAEVD----R----APTLVVAPTVALM 244 (791)
T ss_pred CcccceecchhhhHHHHHHHHHhhh----hhhccceehhhhccchHHHHHHHHHhccc----c----CCeeEEccHHHHH
Confidence 4456777899999999999988664 56789999999999999999999876222 2 3489999999999
Q ss_pred hHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh-----------------hhhhhc
Q psy5647 219 NWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH-----------------ASVLHK 281 (755)
Q Consensus 219 nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~-----------------~~~l~~ 281 (755)
||.+|+.+++.+...++.++|..+....+.+. .+||++|||..+.+. .+.|+.
T Consensus 245 QW~nEI~~~T~gslkv~~YhG~~R~~nikel~----------~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHs 314 (791)
T KOG1002|consen 245 QWKNEIERHTSGSLKVYIYHGAKRDKNIKELM----------NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHS 314 (791)
T ss_pred HHHHHHHHhccCceEEEEEecccccCCHHHhh----------cCcEEEEecHHHHHHHHhccccccccCCcccccchhhh
Confidence 99999999999989999999887665544443 368999999987542 246788
Q ss_pred CCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCCh-----------------
Q psy5647 282 NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTA----------------- 344 (755)
Q Consensus 282 ~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~----------------- 344 (755)
++|-.||+||||.||+..|.+.+|+..|.+.+||+|||||+||++.|||+|+.||+-.+|.-+
T Consensus 315 i~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr 394 (791)
T KOG1002|consen 315 IKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDR 394 (791)
T ss_pred ceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeeccc
Confidence 899999999999999999999999999999999999999999999999999999987765321
Q ss_pred --------------HHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhc--cCCCceEEEEEE
Q psy5647 345 --------------QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSK--YLPVKTEQVVCI 408 (755)
Q Consensus 345 --------------~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~--~LP~k~e~vv~~ 408 (755)
--|....-.||....... .+.+.+...+.++..+|+|||+-.-.. .|||....+..-
T Consensus 395 ~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eG-------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD 467 (791)
T KOG1002|consen 395 MHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEG-------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRD 467 (791)
T ss_pred ccCCcccchhhhhhhhhcccccccchhhcccC-------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehh
Confidence 011112223443322211 234556677888999999999854322 289999988888
Q ss_pred cCCHHHHHHHHHHHhhHH--HHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcC------------------c
Q psy5647 409 KMTDLQKELYTNLIKSDA--VRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTG------------------A 468 (755)
Q Consensus 409 ~ls~~q~~lY~~~~~~~~--~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~------------------~ 468 (755)
-++.++..+|+.+....+ +...+..|....+..++|..|+++||++.||+|+.-..... .
T Consensus 468 ~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ae 547 (791)
T KOG1002|consen 468 FFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAE 547 (791)
T ss_pred hhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhh
Confidence 899999999999876443 33445556555678899999999999999999985421100 0
Q ss_pred cchhhh-----------------hh----hCCccccc----------c------cc-------chhhhHHhhhhHHHHHH
Q psy5647 469 DGFENA-----------------MN----ILPTGYAA----------S------YK-------SGKLLIELSAKLMVLDT 504 (755)
Q Consensus 469 ~~~~~~-----------------~~----~~~~~~~~----------~------~~-------~~~~~~~~S~Kl~~L~~ 504 (755)
+.++.. +. ..|.-... . +. .+......|.|+..|.+
T Consensus 548 d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~E 627 (791)
T KOG1002|consen 548 DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVE 627 (791)
T ss_pred hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHH
Confidence 001100 00 00100000 0 00 01112456889998888
Q ss_pred HHHHHhcc-CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccC
Q psy5647 505 MLAVIKMT-TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLI 583 (755)
Q Consensus 505 lL~~~~~~-~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~ 583 (755)
-|..+++. ..-|.||||||+.+||+|+..|.+.|+..+.+.|+|+++.|...++.|.++.++.|||+|.+|||+.|||+
T Consensus 628 El~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLt 707 (791)
T KOG1002|consen 628 ELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLT 707 (791)
T ss_pred HHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeec
Confidence 77777643 34588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHh
Q psy5647 584 GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRS 663 (755)
Q Consensus 584 ~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~ 663 (755)
.|++|+++||||||+...||++|+|||||.+||.|.||+.++||||+|.+.|++|..++.+.+++++.....++.+|++.
T Consensus 708 eASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqf 787 (791)
T KOG1002|consen 708 EASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQF 787 (791)
T ss_pred hhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred ccc
Q psy5647 664 LFQ 666 (755)
Q Consensus 664 Lf~ 666 (755)
||.
T Consensus 788 LF~ 790 (791)
T KOG1002|consen 788 LFN 790 (791)
T ss_pred Hhc
Confidence 985
No 14
>KOG4439|consensus
Probab=100.00 E-value=2.9e-74 Score=622.15 Aligned_cols=497 Identities=27% Similarity=0.462 Sum_probs=398.9
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC---CCCCCCCCeEEEEeCCcch
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG---PLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~---~~~~p~~~~~LIV~P~sll 217 (755)
..+...|.|||+.|+.||..... ....||||||+||||||+++|+++..-.... ....+...++|||||.||+
T Consensus 320 ~g~~v~LmpHQkaal~Wl~wRE~----q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli 395 (901)
T KOG4439|consen 320 DGLKVELMPHQKAALRWLLWRES----QPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLI 395 (901)
T ss_pred Ccceeecchhhhhhhhhhccccc----CCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHH
Confidence 34667899999999999988765 5688999999999999999999997654321 1122333469999999999
Q ss_pred HhHHHHHHHHhCC-CceEEEecCCCHHHH-HHHHHHHHHHhCCCCCCCEEEEehhhHhh----------hhhhhhcCCcc
Q psy5647 218 KNWCNEITKWLGG-RVAALPIDGGSKAEI-DNKLNSFMQTYGRRPVNPILVISYETFRS----------HASVLHKNEVG 285 (755)
Q Consensus 218 ~nW~~E~~kw~~~-~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~VlI~sye~l~~----------~~~~l~~~~~~ 285 (755)
.||..|+.+-+.. .+.++.++|..+.++ .+.+. .+|||||||..+.. ....|..+.|.
T Consensus 396 ~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~----------~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~ 465 (901)
T KOG4439|consen 396 HQWEAEVARRLEQNALSVYLYHGPNKREISAKELR----------KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWS 465 (901)
T ss_pred HHHHHHHHHHHhhcceEEEEecCCccccCCHHHHh----------hcceEEEeeeccccCCchhhhcccCccHHHHhhHH
Confidence 9999999998875 567777777764322 22232 36999999998876 23567778999
Q ss_pred EEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCH
Q psy5647 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365 (755)
Q Consensus 286 lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~ 365 (755)
.||+||||.+||+.++.+.|+..|.+..||+||||||||++.|+|+|+.||+..+|++...|+++..++-..|
T Consensus 466 RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g------- 538 (901)
T KOG4439|consen 466 RVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG------- 538 (901)
T ss_pred HhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999887654333
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhcchhHhhc-----cCCCceEEEEEEcCCHHHHHHHHHHHhhHH--HHHHHc------
Q psy5647 366 AERTKANERLEQLIGIVNRCLIRRTSALLSK-----YLPVKTEQVVCIKMTDLQKELYTNLIKSDA--VRRTMK------ 432 (755)
Q Consensus 366 ~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~-----~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~--~~~~~~------ 432 (755)
..+|.-+++..|+|||++.+.. .||.+...++.++|+..+...|+-+..... +...+.
T Consensus 539 ---------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~ 609 (901)
T KOG4439|consen 539 ---------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRN 609 (901)
T ss_pred ---------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 2345556788999999998876 699999999999999999999998865432 111110
Q ss_pred ------------------------------CCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCc---cchhhh-----
Q psy5647 433 ------------------------------GGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGA---DGFENA----- 474 (755)
Q Consensus 433 ------------------------------~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~---~~~~~~----- 474 (755)
.|.+......+|..+.+|||+|.||.++....+... .++...
T Consensus 610 ~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~ 689 (901)
T KOG4439|consen 610 NDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQL 689 (901)
T ss_pred cccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhh
Confidence 011111223468899999999999977654322110 000000
Q ss_pred ----h----hhCCccccc-c-------ccch-hhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 475 ----M----NILPTGYAA-S-------YKSG-KLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 475 ----~----~~~~~~~~~-~-------~~~~-~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
. ...++.-.. . .... -.....|.|+..+...++.+....++|+||+||++.+|++++..+...
T Consensus 690 e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~ 769 (901)
T KOG4439|consen 690 EEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKG 769 (901)
T ss_pred hhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhC
Confidence 0 000000000 0 0000 011235889998888888887778999999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|..|..++|.+..++|+.+|+.||. .++.+|+|+|..|||+||||++|||+|++|.+|||+...||.+|+||+||+|+|
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 9999999999999999999999999 455899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchh-hhccCCHHHHHhcccc
Q psy5647 617 FVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEED-VARHFSMSELRSLFQL 667 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~-~~~~~s~~el~~Lf~~ 667 (755)
+||||++.||+|++|...|..|..++..|+.+... ..+.++..+|+.||.+
T Consensus 850 ~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 850 FIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFGL 901 (901)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhCC
Confidence 99999999999999999999999999999996543 4688999999999974
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-67 Score=644.95 Aligned_cols=509 Identities=36% Similarity=0.535 Sum_probs=418.1
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
..+...|||||.+|+.|+...+. ....||||||+||+|||+|+|+++..++...... .+++|||||.+++.||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~----~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~---~~~~liv~p~s~~~nw 405 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLR----SNLLGGILADDMGLGKTVQTIALLLSLLESIKVY---LGPALIVVPASLLSNW 405 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH----hccCCCcccccccchhHHHHHHHHHhhhhcccCC---CCCeEEEecHHHHHHH
Confidence 45568899999999999984221 5678999999999999999999998866555432 3568999999999999
Q ss_pred HHHHHHHhCCCceEEEecCCCH--HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh---hhhhhhcCCccEEEEeCCccc
Q psy5647 221 CNEITKWLGGRVAALPIDGGSK--AEIDNKLNSFMQTYGRRPVNPILVISYETFRS---HASVLHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~---~~~~l~~~~~~lvIiDEaH~l 295 (755)
.+|+.+|.+....+..+.|... ......+..+..... ...++++++||+.++. +...+....|+.+|+||||++
T Consensus 406 ~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~i 484 (866)
T COG0553 406 KREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHL-VIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRI 484 (866)
T ss_pred HHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhcc-cceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHH
Confidence 9999999987322555655542 112233333322111 1236899999999999 899999999999999999999
Q ss_pred CCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhh-hhcCCCCC-ChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVH-FVNQGILG-TAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 296 Kn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~-fl~p~~l~-~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
||..+..++++..+++.+|++|||||++|++.|||++++ |++|+.++ +...|.++|..|+..+.+... ......
T Consensus 485 kn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~ 560 (866)
T COG0553 485 KNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LEAREL 560 (866)
T ss_pred hhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hhhHHH
Confidence 999999999999999999999999999999999999999 99999999 569999999999988776554 223334
Q ss_pred HHHHHHHhHhHHHHhcchhH--hhccCCCceEEEEEEcCCHHHHHHHHHHHhh---H--HHHHHHcCCCc--cc--cccc
Q psy5647 374 RLEQLIGIVNRCLIRRTSAL--LSKYLPVKTEQVVCIKMTDLQKELYTNLIKS---D--AVRRTMKGGEN--TK--LGMT 442 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~--v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~---~--~~~~~~~~~~~--~~--~~~~ 442 (755)
.+..|+.++.+|++||++.+ +...||+|.+.+++|.+++.|..+|..++.. . .+......... .. ....
T Consensus 561 ~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 561 GIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Confidence 45558899999999999999 8889999999999999999999999999872 2 12221111110 00 2567
Q ss_pred HHHHHHHHHHHhCChhhhhhhh-hcCccchhhhhhhCCccccccccchhhhHHhh-hhHHHHHHHH-HHHhccCCC--EE
Q psy5647 443 ALSSITSLKKLCNHPDLVMDKI-QTGADGFENAMNILPTGYAASYKSGKLLIELS-AKLMVLDTML-AVIKMTTDD--KI 517 (755)
Q Consensus 443 ~l~~i~~Lrk~~nhp~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-~Kl~~L~~lL-~~~~~~~~~--Kv 517 (755)
.+..++.|+++|+||.++.... ........... .. ..........+..| +|+..+.+++ ..+... +. |+
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~-~~~~kv 714 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLR----ED-KDFDYLKKPLIQLSKGKLQALDELLLDKLLEE-GHYHKV 714 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhh----cc-cccccccchhhhccchHHHHHHHHHHHHHHhh-cccccE
Confidence 8899999999999999987642 11110000000 00 01112233456677 9999999999 676644 66 99
Q ss_pred EEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCC
Q psy5647 518 VLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597 (755)
Q Consensus 518 lIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp 597 (755)
+||+||++++++++..|...++.++++||+++.+.|+.++++|++++...||++|++|||+||||++|++||+||++|||
T Consensus 715 lifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp 794 (866)
T COG0553 715 LIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP 794 (866)
T ss_pred EEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccCh
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred CcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCC-chhhhccCCHHHHHhcccc
Q psy5647 598 ANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDC-EEDVARHFSMSELRSLFQL 667 (755)
Q Consensus 598 ~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~-~~~~~~~~s~~el~~Lf~~ 667 (755)
+.+.||++|+||+||+++|.|||+++.||+||+|+++|..|+.+...+++. +......++.+++.+||..
T Consensus 795 ~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 865 (866)
T COG0553 795 AVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFSL 865 (866)
T ss_pred HHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999995 7777889999999999865
No 16
>KOG1000|consensus
Probab=100.00 E-value=1.4e-62 Score=513.39 Aligned_cols=433 Identities=27% Similarity=0.353 Sum_probs=344.5
Q ss_pred eeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 137 v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
-+.||.+...|.|||++||.|.++ .++.||||||||||||+|||+++.++...+| .|||||+++
T Consensus 189 ev~d~kLvs~LlPFQreGv~faL~--------RgGR~llADeMGLGKTiQAlaIA~yyraEwp--------lliVcPAsv 252 (689)
T KOG1000|consen 189 EVMDPKLVSRLLPFQREGVIFALE--------RGGRILLADEMGLGKTIQALAIARYYRAEWP--------LLIVCPASV 252 (689)
T ss_pred hccCHHHHHhhCchhhhhHHHHHh--------cCCeEEEecccccchHHHHHHHHHHHhhcCc--------EEEEecHHH
Confidence 356899999999999999999875 5778999999999999999999999988876 599999999
Q ss_pred hHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC
Q psy5647 217 VKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 217 l~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK 296 (755)
...|++++.+|+|.-..+..+.++...- . .. .....|.|+||+++..+...+...+|.+||+||+|++|
T Consensus 253 rftWa~al~r~lps~~pi~vv~~~~D~~-----~-~~-----~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk 321 (689)
T KOG1000|consen 253 RFTWAKALNRFLPSIHPIFVVDKSSDPL-----P-DV-----CTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLK 321 (689)
T ss_pred hHHHHHHHHHhcccccceEEEecccCCc-----c-cc-----ccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhh
Confidence 9999999999999744444444432110 0 00 01235999999999999999999999999999999999
Q ss_pred CCccHHHHHHHcc--ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 297 NCESQTYQALMGL--KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 297 n~~s~~~~al~~l--~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
+..+++++++..+ .+++.|+|||||.-..+.|||.++..+++.+|.++.+|..+|++--.-+...+.. +-.+
T Consensus 322 ~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dyk------g~tn 395 (689)
T KOG1000|consen 322 DSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYK------GCTN 395 (689)
T ss_pred ccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecC------CCCC
Confidence 9999999998887 7899999999999999999999999999999999999999999754443322221 2345
Q ss_pred HHHHHHhHh-HHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 375 LEQLIGIVN-RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 375 ~~~L~~~l~-~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
+.+|.-++. ..||||+|.++.++||+|...++.+ .+..+-+.-+.++....- +.. ... +.-
T Consensus 396 l~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~------~t~-------~~~-~e~--- 457 (689)
T KOG1000|consen 396 LEELAALLFKRLMIRRLKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAAD------YTK-------VNS-MER--- 457 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhh------cch-------hhh-hhh---
Confidence 677777765 5689999999999999996665554 344444444444332210 000 000 000
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHH---HhccCCCEEEEEEechhHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAV---IKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~---~~~~~~~KvlIFs~~~~~ld~l 530 (755)
+|-.++... ....-.|+..+.+.|.. +-..++.|+|||+.+..+||-|
T Consensus 458 -~~~~l~l~y----------------------------~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~I 508 (689)
T KOG1000|consen 458 -KHESLLLFY----------------------------SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTI 508 (689)
T ss_pred -hhHHHHHHH----------------------------HHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHH
Confidence 111111000 00011222222222222 1235689999999999999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhcc
Q psy5647 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610 (755)
Q Consensus 531 ~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~ 610 (755)
+..+..+++.++||||+++..+|+.+++.|+.++...|.++|..|+|+||+|++|+.|||.+.+|||....||.+|+||+
T Consensus 509 q~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRi 588 (689)
T KOG1000|consen 509 QVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRI 588 (689)
T ss_pred HHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCc
Q psy5647 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649 (755)
Q Consensus 611 GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~ 649 (755)
||+..|.||.|+++||+||.+|.....|....+.+-.+.
T Consensus 589 GQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s 627 (689)
T KOG1000|consen 589 GQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSS 627 (689)
T ss_pred cccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999999999999999999888876654
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.9e-58 Score=540.86 Aligned_cols=443 Identities=19% Similarity=0.270 Sum_probs=327.7
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...|.|||.+.+..+.. ....++|||||||||||++|++++..++..+. ++++|||||.+|+.||..|
T Consensus 150 ~~~l~pHQl~~~~~vl~-------~~~~R~LLADEvGLGKTIeAglil~~l~~~g~-----~~rvLIVvP~sL~~QW~~E 217 (956)
T PRK04914 150 RASLIPHQLYIAHEVGR-------RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR-----AERVLILVPETLQHQWLVE 217 (956)
T ss_pred CCCCCHHHHHHHHHHhh-------ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----CCcEEEEcCHHHHHHHHHH
Confidence 35699999999877654 34568999999999999999999999887663 4679999999999999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh---hhhhcCCccEEEEeCCcccCCC--
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNC-- 298 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~---~~l~~~~~~lvIiDEaH~lKn~-- 298 (755)
+.+|++..+. .+++..-..... .....-...+++|+||+.++.+. ..+....||+|||||||+++|.
T Consensus 218 l~~kF~l~~~--i~~~~~~~~~~~------~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~ 289 (956)
T PRK04914 218 MLRRFNLRFS--LFDEERYAEAQH------DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEE 289 (956)
T ss_pred HHHHhCCCeE--EEcCcchhhhcc------cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCC
Confidence 9999874333 333322111000 00001123579999999998754 4566779999999999999964
Q ss_pred -ccHHHHHHHcc--ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccC--cc-------ccCCCCCCCHH
Q psy5647 299 -ESQTYQALMGL--KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET--PI-------LRGQDSCASDA 366 (755)
Q Consensus 299 -~s~~~~al~~l--~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~--pi-------~~g~~~~~~~~ 366 (755)
.|+.++.+..+ +++++++|||||+||++.|+|++++|++|+.|+++..|.+.++. |+ ..+........
T Consensus 290 ~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 290 APSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred CcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 46778888888 67899999999999999999999999999999999999875542 22 11111000000
Q ss_pred HHH-------------------------HHHHHHHHHHH--hHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHH
Q psy5647 367 ERT-------------------------KANERLEQLIG--IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419 (755)
Q Consensus 367 ~~~-------------------------~~~~~~~~L~~--~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~ 419 (755)
... ...+.+..|.. -..+.|+|++++++.. +|.+..+.+.+++++.....+.
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~ 448 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIK 448 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHH
Confidence 000 00111111111 1236788999999774 8999999999988765333322
Q ss_pred HHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhH
Q psy5647 420 NLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKL 499 (755)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl 499 (755)
. .. ...+++ +.+|..+..... . .......+.|+
T Consensus 449 ~----~~--------------------~~~~~~-~l~pe~~~~~~~-------~---------------~~~~~~~d~Ki 481 (956)
T PRK04914 449 V----SL--------------------EARARD-MLYPEQIYQEFE-------D---------------NATWWNFDPRV 481 (956)
T ss_pred H----hH--------------------HHHHHh-hcCHHHHHHHHh-------h---------------hhhccccCHHH
Confidence 1 00 001111 223322211000 0 00112346788
Q ss_pred HHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH-HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCccc
Q psy5647 500 MVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS-KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGC 578 (755)
Q Consensus 500 ~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L-~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~ 578 (755)
..|..++... .++|+||||++..+++.|.+.| ...|+++..++|+++..+|.++++.|+++++...+|++|.+||+
T Consensus 482 ~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgse 558 (956)
T PRK04914 482 EWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSE 558 (956)
T ss_pred HHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhcc
Confidence 8888877654 3789999999999999999999 56799999999999999999999999985433346788999999
Q ss_pred ccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCC
Q psy5647 579 GLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS 657 (755)
Q Consensus 579 GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s 657 (755)
|+|++.|++||+||+||||..++||+||+||+||+++|.||.++.+||+||+|++....|.++.+.++.....+...|.
T Consensus 559 GlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 559 GRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887665555444
No 18
>KOG1001|consensus
Probab=100.00 E-value=7.6e-54 Score=488.37 Aligned_cols=471 Identities=27% Similarity=0.402 Sum_probs=369.7
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC--CCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP--LAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~--~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
.+|..+..|+... +-....|||+||+||+|||+++|+++.......+ ......+.+|||||.+++.||..|+.+
T Consensus 135 ~~~~~~~~~~~~~----~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek 210 (674)
T KOG1001|consen 135 LKQKYRWSLLKSR----EQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEK 210 (674)
T ss_pred HHHHHHHHhhccc----ccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhc
Confidence 5555554444332 2256789999999999999999999865443332 001234678999999999999999966
Q ss_pred HhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHH
Q psy5647 227 WLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305 (755)
Q Consensus 227 w~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~a 305 (755)
-... .+.++.++| +.+.... ...++||+|||.++.. ..+....|-+||+||||.++|.+++.+++
T Consensus 211 ~~~~~~l~v~v~~g--r~kd~~e----------l~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a 276 (674)
T KOG1001|consen 211 VTEEDKLSIYVYHG--RTKDKSE----------LNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKA 276 (674)
T ss_pred cCCccceEEEEecc--cccccch----------hcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhh
Confidence 6655 344444554 1111111 1346899999999986 55666899999999999999999999999
Q ss_pred HHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHH
Q psy5647 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385 (755)
Q Consensus 306 l~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~ 385 (755)
+..+.+.+||+|||||+||++.|+|+++.|+.-.++..+..|...+..|+..+.+ .+....+..++..+
T Consensus 277 ~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~~v 345 (674)
T KOG1001|consen 277 VCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILKKV 345 (674)
T ss_pred heeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876643 35567788889999
Q ss_pred HHhcchhHhh-----ccCCCceEEEEEEcCCHHHHHHHHHHHhhHH--HHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 386 LIRRTSALLS-----KYLPVKTEQVVCIKMTDLQKELYTNLIKSDA--VRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 386 ~lRRt~~~v~-----~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~--~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
++|||+.... ..|||+...++.+.++..++.+|..+..... .......+.........+..+.+||++|+||.
T Consensus 346 ~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~ 425 (674)
T KOG1001|consen 346 MLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSL 425 (674)
T ss_pred HhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchH
Confidence 9999986322 2599999999999999999999999876543 33444455555566778888899999999999
Q ss_pred hhhhhhhcCc-cchh-----hhhhhC-----------Ccc------------------cccccc----------chhhh-
Q psy5647 459 LVMDKIQTGA-DGFE-----NAMNIL-----------PTG------------------YAASYK----------SGKLL- 492 (755)
Q Consensus 459 l~~~~~~~~~-~~~~-----~~~~~~-----------~~~------------------~~~~~~----------~~~~~- 492 (755)
++........ .+.. .....+ ++. ...... .....
T Consensus 426 lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 426 LVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred hhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 9864432211 0000 000000 000 000000 00000
Q ss_pred ------------HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHH
Q psy5647 493 ------------IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 493 ------------~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~F 560 (755)
...|.|+..+.++|.........|+|||||++..+++++..|...|+.+.+++|.++.+.|.+.+..|
T Consensus 506 s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~ 585 (674)
T KOG1001|consen 506 SANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDF 585 (674)
T ss_pred hcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccc
Confidence 01477777777777755433224999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHH
Q psy5647 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKA 640 (755)
Q Consensus 561 n~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~ 640 (755)
+.++...|+++|.+|||.||||+.|++|+++||+|||+.++||+.|+||+||+++|.|+||+..+|+||+|...|++|..
T Consensus 586 ~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~ 665 (674)
T KOG1001|consen 586 PCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKRE 665 (674)
T ss_pred ccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhCC
Q psy5647 641 LSSCVVDC 648 (755)
Q Consensus 641 l~~~vv~~ 648 (755)
+.+.+.+.
T Consensus 666 ~~~~a~~~ 673 (674)
T KOG1001|consen 666 YNASAFGE 673 (674)
T ss_pred HHhhhccC
Confidence 98877653
No 19
>KOG0383|consensus
Probab=100.00 E-value=3.3e-48 Score=435.33 Aligned_cols=388 Identities=30% Similarity=0.500 Sum_probs=323.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
+.|.|||.+|++|+..++ ..+..+|||||||+|||+|++.++..+...+....| .|+++|.+.+-||..|+
T Consensus 294 g~L~~~qleGln~L~~~w-----s~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P----~Lv~ap~sT~~nwe~e~ 364 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISW-----SPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGP----PLVVAPLSTIVNWEREF 364 (696)
T ss_pred ccccccchhhhhhhhccc-----ccCCCcccchhhcCCceeeEEEEEeecccccCCCCC----ceeeccCccccCCCCch
Confidence 789999999999999887 577889999999999999999999999877665444 79999999999999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHH-HH-------------hCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEe
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFM-QT-------------YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCD 290 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------------~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiD 290 (755)
..|++. ..+..+.|..+....-....+. .. ......+.|..++|++.......+..+.|.++|+|
T Consensus 365 ~~wap~-~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livd 443 (696)
T KOG0383|consen 365 ELWAPS-FYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVD 443 (696)
T ss_pred hccCCC-cccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEee
Confidence 999987 3333333322211111101110 00 01124578999999999999999999999999999
Q ss_pred CCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHH
Q psy5647 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTK 370 (755)
Q Consensus 291 EaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~ 370 (755)
|+|++||..|+....+......++++|||||.||++.||+++|+|+.|+.+++...|.+.|..- .
T Consensus 444 e~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------------~ 508 (696)
T KOG0383|consen 444 EAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------------S 508 (696)
T ss_pred chhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------h
Confidence 9999999999999999999999999999999999999999999999999999999998887542 2
Q ss_pred HHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHH
Q psy5647 371 ANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450 (755)
Q Consensus 371 ~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~L 450 (755)
..+....|+.++.++|+||.+.++.+..|.|.+.++.+.|++.|+++|+.++..+- ..+.. +......++.++.|
T Consensus 509 ~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~--~~l~~---~~~~~s~~n~~mel 583 (696)
T KOG0383|consen 509 CEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNW--QGLLA---GVHQYSLLNIVMEL 583 (696)
T ss_pred HHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCCh--HHHhh---cchhHHHHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999987552 12222 23456678889999
Q ss_pred HHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHH
Q psy5647 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 451 rk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l 530 (755)
+|+|+||+++... +...... .-....+++.|+|+..|..++..++. .++||+||+|++.++|++
T Consensus 584 ~K~~~hpy~~~~~-e~~~~~~--------------~~~~~~l~k~~~k~~~l~~~~~~l~~-~ghrvl~~~q~~~~ldll 647 (696)
T KOG0383|consen 584 RKQCNHPYLSPLE-EPLEENG--------------EYLGSALIKASGKLTLLLKMLKKLKS-SGHRVLIFSQMIHMLDLL 647 (696)
T ss_pred HHhhcCcccCccc-cccccch--------------HHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHh
Confidence 9999999998651 1110000 01234578899999999999999985 589999999999999999
Q ss_pred HHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccc
Q psy5647 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCG 579 (755)
Q Consensus 531 ~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~G 579 (755)
+++|...+ .|.|+||..+...|+..+++||. ++..++||+||+|||.|
T Consensus 648 ed~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 648 EDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999 99999999999999999999997 88999999999999998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=9.2e-44 Score=380.28 Aligned_cols=289 Identities=35% Similarity=0.551 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHh---hc-ccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 150 HQREGVKFMYECV---TG-VRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 150 hQ~egv~~l~~~~---~g-~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
||++||.||++.. .+ ......+|||||||||+|||+++++++..+....+..+ .+++|||||++++.+|..|+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~--~~~~LIv~P~~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRG--EKKTLIVVPSSLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS---S-EEEEE-TTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccccc--ccceeEeeccchhhhhhhhhc
Confidence 8999999999986 00 00146789999999999999999999998887765432 245999999999999999999
Q ss_pred HHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHh-----hhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 226 KWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR-----SHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 226 kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~-----~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+|+++ ...++.+.+..... ..........+++|+||+++. ...+.+...+|++||+||||++||..
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~ 150 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERR--------RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD 150 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHH--------HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT
T ss_pred cccccccccccccccccccc--------cccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc
Confidence 99954 66777777665111 011222356789999999999 67778888899999999999999999
Q ss_pred cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 300 s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
+..++++..+.+.++|+|||||++|++.|+|++++|+.|..+++...|.+.|..+ ......+....|.
T Consensus 151 s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L~ 218 (299)
T PF00176_consen 151 SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENIERLR 218 (299)
T ss_dssp SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHHHHHH
T ss_pred ccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999998654 3345567788999
Q ss_pred HhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhh
Q psy5647 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459 (755)
Q Consensus 380 ~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l 459 (755)
.+++++++||++.++...+|++.+.++.|+||+.|+++|+.+......................+..+..||++|+||.|
T Consensus 219 ~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 219 ELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPYL 298 (299)
T ss_dssp HHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-THH
T ss_pred cccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999988899999999999999999999998865442111111112234556788899999999999987
Q ss_pred h
Q psy5647 460 V 460 (755)
Q Consensus 460 ~ 460 (755)
+
T Consensus 299 ~ 299 (299)
T PF00176_consen 299 V 299 (299)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.7e-39 Score=368.06 Aligned_cols=357 Identities=19% Similarity=0.271 Sum_probs=252.4
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~~ 222 (755)
...|||||.+++.+++.. ...++||+.++||+|||+++++++..+. +++|||||++ ++.||.+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~------gr~r~GIIvLPtGaGKTlvai~aa~~l~----------k~tLILvps~~Lv~QW~~ 316 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVTAACTVK----------KSCLVLCTSAVSVEQWKQ 316 (732)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCCcEEEeCCCCChHHHHHHHHHHhC----------CCEEEEeCcHHHHHHHHH
Confidence 468999999999988641 1235789999999999999999886641 4589999985 5899999
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh----------hhhhhcCCccEEEEeC
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH----------ASVLHKNEVGLVLCDE 291 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~----------~~~l~~~~~~lvIiDE 291 (755)
||.+|+.. ...+..+.++.+... ....+|+|+||+++... ...+....|++||+||
T Consensus 317 ef~~~~~l~~~~I~~~tg~~k~~~-------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 317 QFKMWSTIDDSQICRFTSDAKERF-------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHhcCCCCceEEEEecCccccc-------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 99999753 223334444332210 12357999999998642 2445556899999999
Q ss_pred CcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhh-cCCCCCChHHHHHhccCccccCCCCCCCHHHHHH
Q psy5647 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFV-NQGILGTAQEFRKQYETPILRGQDSCASDAERTK 370 (755)
Q Consensus 292 aH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl-~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~ 370 (755)
||++.+ ....+.+..+.+.+||+|||||+.++- .+..+.++ .|..+. .+
T Consensus 384 vH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye----------~~---------------- 433 (732)
T TIGR00603 384 VHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYE----------AN---------------- 433 (732)
T ss_pred cccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeee----------cC----------------
Confidence 999954 333446667899999999999998762 23333332 232211 00
Q ss_pred HHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHH
Q psy5647 371 ANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450 (755)
Q Consensus 371 ~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~L 450 (755)
..+| ++ ..+|.+.....|+|+|++.....| +.... . .
T Consensus 434 ----~~eL---i~-----------~G~LA~~~~~ev~v~~t~~~~~~y---l~~~~--------~--------------~ 470 (732)
T TIGR00603 434 ----WMEL---QK-----------KGFIANVQCAEVWCPMTPEFYREY---LRENS--------R--------------K 470 (732)
T ss_pred ----HHHH---Hh-----------CCccccceEEEEEecCCHHHHHHH---HHhcc--------h--------------h
Confidence 0011 10 235677777889999998754444 21110 0 0
Q ss_pred HHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHH
Q psy5647 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 451 rk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l 530 (755)
+. ++ ......|+..+..++.... ..++|+||||++...++.+
T Consensus 471 k~------~l-------------------------------~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~ 512 (732)
T TIGR00603 471 RM------LL-------------------------------YVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEY 512 (732)
T ss_pred hh------HH-------------------------------hhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHH
Confidence 00 00 0012467788888877654 4689999999999887777
Q ss_pred HHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHhHhhhc
Q psy5647 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAMARVWR 609 (755)
Q Consensus 531 ~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~gR~~R 609 (755)
...| +. ..++|+|+..+|.+++++|+.++... +|++|++|++|||++.|+.||++++++ |+..+.||+||+.|
T Consensus 513 a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR 586 (732)
T TIGR00603 513 AIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILR 586 (732)
T ss_pred HHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhccccc
Confidence 6665 43 45899999999999999998755543 456669999999999999999999986 99999999999999
Q ss_pred cCCCCc-----EEEEEEeeCCCHHHHHH---HHHHHHHHhHhhhh
Q psy5647 610 DGQKKP-----CFVYRFLSTGSIEEKMM---QRQAHKKALSSCVV 646 (755)
Q Consensus 610 ~GQ~k~-----V~Vyrlv~~gTiEEkI~---~r~~~K~~l~~~vv 646 (755)
.+..+. .++|.|++.+|.|+..- ++....++.+-.|+
T Consensus 587 ~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~~vi 631 (732)
T TIGR00603 587 AKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSFKVI 631 (732)
T ss_pred CCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCeeEEE
Confidence 987654 78999999999999884 33334555555554
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.3e-33 Score=339.57 Aligned_cols=447 Identities=17% Similarity=0.204 Sum_probs=275.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.++|+||.+.+..+.+ +++|++++||+|||++++.++..++.. + .+++|||||+ .|+.||..+
T Consensus 14 ~~~r~yQ~~~~~~~l~----------~n~lv~~ptG~GKT~~a~~~i~~~l~~-~-----~~~vLvl~Pt~~L~~Q~~~~ 77 (773)
T PRK13766 14 IEARLYQQLLAATALK----------KNTLVVLPTGLGKTAIALLVIAERLHK-K-----GGKVLILAPTKPLVEQHAEF 77 (773)
T ss_pred CCccHHHHHHHHHHhc----------CCeEEEcCCCccHHHHHHHHHHHHHHh-C-----CCeEEEEeCcHHHHHHHHHH
Confidence 3689999998877642 378999999999999999988877642 1 2569999999 888999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCCCcc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+.++++. ...+..+.|......+.. .| ...+|+|+|++.+..+. ..+....|++||+||||++.+..+
T Consensus 78 ~~~~~~~~~~~v~~~~g~~~~~~r~~--~~-------~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~ 148 (773)
T PRK13766 78 FRKFLNIPEEKIVVFTGEVSPEKRAE--LW-------EKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYA 148 (773)
T ss_pred HHHHhCCCCceEEEEeCCCCHHHHHH--HH-------hCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccccc
Confidence 9998764 234555666544332221 12 12479999999987654 233345799999999999987655
Q ss_pred HHHHHHH---ccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChH----HHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 301 QTYQALM---GLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ----EFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 301 ~~~~al~---~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~----~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
..+.+-. ..+..++++|||||.++ ...+..+++-+.......+. .....+..+-..-... ....
T Consensus 149 ~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v--------~l~~ 219 (773)
T PRK13766 149 YVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRV--------ELPE 219 (773)
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEe--------CCcH
Confidence 4433322 22456699999999876 45555555554322211111 1111111100000000 0123
Q ss_pred HHHHHHHhHhHHHHhcchhHhhc-cCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSK-YLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~-~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
...++...+..++.++.+..... ..++....+....+...+..++..+.. ... .....+.....+.+
T Consensus 220 ~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~----------~~~--~~~~~~~~~~~~~~ 287 (773)
T PRK13766 220 ELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIAN----------DDS--EGYEAISILAEAMK 287 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhc----------Cch--HHHHHHHHHHHHHH
Confidence 34556666777766665543321 122222112222223333333322211 100 00011111112222
Q ss_pred HhCChhhhhhh--------h---hcCc---cchhhhhhhCCcccc-ccccchhhhHHhhhhHHHHHHHHHHHhc-cCCCE
Q psy5647 453 LCNHPDLVMDK--------I---QTGA---DGFENAMNILPTGYA-ASYKSGKLLIELSAKLMVLDTMLAVIKM-TTDDK 516 (755)
Q Consensus 453 ~~nhp~l~~~~--------~---~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~S~Kl~~L~~lL~~~~~-~~~~K 516 (755)
+.....++... . .... .........+..... ............++|+..|.++|..+.. .++.|
T Consensus 288 l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~k 367 (773)
T PRK13766 288 LRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSR 367 (773)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCe
Confidence 22211111100 0 0000 000000000000000 0000001112346899999999987653 46789
Q ss_pred EEEEEechhHHHHHHHHHHhcCCcEEEEcCC--------CCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEE
Q psy5647 517 IVLVSNYTQTLDLFERLSKLRGYKYVRLDGS--------MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRL 588 (755)
Q Consensus 517 vlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~--------~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~v 588 (755)
+||||++..+.+.|.++|...|+.+..++|. ++..+|.+++++|+++.. -+|++|.++++|+|++.++.|
T Consensus 368 vlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~--~vLvaT~~~~eGldi~~~~~V 445 (773)
T PRK13766 368 IIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEF--NVLVSTSVAEEGLDIPSVDLV 445 (773)
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCC--CEEEECChhhcCCCcccCCEE
Confidence 9999999999999999999999999999997 888999999999998643 367899999999999999999
Q ss_pred EEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhH
Q psy5647 589 VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALS 642 (755)
Q Consensus 589 I~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~ 642 (755)
|+||++|||..++|+.||++|.|+ ..+|.|++.+|.||.+|.....|...+
T Consensus 446 I~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 446 IFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred EEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 999999999999999988888765 678999999999999998887776665
No 23
>KOG0298|consensus
Probab=100.00 E-value=1.6e-32 Score=315.75 Aligned_cols=268 Identities=21% Similarity=0.269 Sum_probs=194.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHH-----------cCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEec
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLR-----------QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~-----------~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~ 238 (755)
+..+++|||||+|||...+++...-+. .........+++|||||++++.||-.||.++.+..+.++.+.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 444699999999999999887643321 111111224789999999999999999999999877888876
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh----------------------hhhhcCCccEEEEeCCcccC
Q psy5647 239 GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA----------------------SVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~----------------------~~l~~~~~~lvIiDEaH~lK 296 (755)
|-.+...... ..+ ..+|||+|||+.++... +.|....|..||+|||+.+.
T Consensus 454 Girk~~~~~~-~el-------~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 454 GIRKTFWLSP-FEL-------LQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred chhhhcccCc-hhh-------hccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 6433222211 111 34799999999998743 23445679999999999999
Q ss_pred CCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 297 NCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 297 n~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
...|..++.+..|.+.++|+.||||+|+ +.+||.|+.||+-.+|+....|.+....++.+ .....
T Consensus 526 sssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~--------------ra~~~ 590 (1394)
T KOG0298|consen 526 SSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQL--------------RAKCE 590 (1394)
T ss_pred chHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHH--------------Hhhhh
Confidence 9999999999999999999999999999 99999999999999999999887766544322 12334
Q ss_pred HHHHhHhHHHHhcchhHhhc--cCCCceEEEEEEcCCHHHHHHHHHHHh----hH-HHHHHHc----CCCc--c----cc
Q psy5647 377 QLIGIVNRCLIRRTSALLSK--YLPVKTEQVVCIKMTDLQKELYTNLIK----SD-AVRRTMK----GGEN--T----KL 439 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~--~LP~k~e~vv~~~ls~~q~~lY~~~~~----~~-~~~~~~~----~~~~--~----~~ 439 (755)
.+..++...+-|+.+..+.. .+||..+.+....+++.+..+|+..-. .. .....+. .+.. . ..
T Consensus 591 ~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 591 PLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred hHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 56667777788888777655 489988888888888888887764321 11 1111111 1111 0 11
Q ss_pred cccHHHHHHHHHHHhCChhhh
Q psy5647 440 GMTALSSITSLKKLCNHPDLV 460 (755)
Q Consensus 440 ~~~~l~~i~~Lrk~~nhp~l~ 460 (755)
...++..+.+||++|.||...
T Consensus 671 ~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHHHHHHhhcccccc
Confidence 233556778999999998764
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=1e-29 Score=270.57 Aligned_cols=427 Identities=17% Similarity=0.188 Sum_probs=276.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
+-|.||..-+.-.+ .++++++.++|||||+.|+.++...++..+ +++|+++|+ .|+.|...-+
T Consensus 15 e~R~YQ~~i~a~al----------~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 15 EPRLYQLNIAAKAL----------FKNTLVVLPTGLGKTFIAAMVIANRLRWFG------GKVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cHHHHHHHHHHHHh----------hcCeEEEecCCccHHHHHHHHHHHHHHhcC------CeEEEecCCchHHHHHHHHH
Confidence 55789987776543 248999999999999999999987776653 368999999 8999999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCCCccH
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKNCESQ 301 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn~~s~ 301 (755)
.+.++. .-.+..+.|....+.+. ..|.. ..|++.|++++.++. ..+...++.++|+|||||.-+..+-
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~--~~w~~-------~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAY 149 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEERE--ELWAK-------KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAY 149 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHH--HHHhh-------CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchH
Confidence 999885 34555666665554333 23322 369999999999875 3455567899999999998776654
Q ss_pred HHHH--HHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 302 TYQA--LMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 302 ~~~a--l~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.+-+ .... +..+.++|||||-. +...+...++-|.
T Consensus 150 v~Va~~y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLg----------------------------------------- 187 (542)
T COG1111 150 VFVAKEYLRSAKNPLILGLTASPGS-DLEKIQEVVENLG----------------------------------------- 187 (542)
T ss_pred HHHHHHHHHhccCceEEEEecCCCC-CHHHHHHHHHhCC-----------------------------------------
Confidence 4433 2333 44578999999943 2222222222111
Q ss_pred HHhHhHHHHhcc-hhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHH--HHHHHcCCCccc----ccccHHHHH----
Q psy5647 379 IGIVNRCLIRRT-SALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDA--VRRTMKGGENTK----LGMTALSSI---- 447 (755)
Q Consensus 379 ~~~l~~~~lRRt-~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~--~~~~~~~~~~~~----~~~~~l~~i---- 447 (755)
++...+|-- ..|+.+|+-.+....+.++++++-.++-+.+-.--. +......|-... .....+...
T Consensus 188 ---Ie~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~ 264 (542)
T COG1111 188 ---IEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRL 264 (542)
T ss_pred ---cceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHH
Confidence 111122211 246777888888888999998887666555432111 111111110000 011111111
Q ss_pred -----------------HHHHHHhCChhhhhh--------h---hhcC--ccchhhhhhhCCccccccccch----hhhH
Q psy5647 448 -----------------TSLKKLCNHPDLVMD--------K---IQTG--ADGFENAMNILPTGYAASYKSG----KLLI 493 (755)
Q Consensus 448 -----------------~~Lrk~~nhp~l~~~--------~---~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~ 493 (755)
+.+-++..--.++.. . +... ..+...+...+...+....... ...-
T Consensus 265 ~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~ 344 (542)
T COG1111 265 IMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESG 344 (542)
T ss_pred HhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhcccc
Confidence 111111000001000 0 0000 0000000000100000000000 0000
Q ss_pred HhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHHHHHHHHHhcCCcEE-EEcC--------CCCHHHHHHHHHHHccC
Q psy5647 494 ELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYV-RLDG--------SMTIKKRAKVVETFNKT 563 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~-~ldG--------~~~~~~R~~~v~~Fn~~ 563 (755)
-.-+||..+.+++.... ...+.+++||++|++|++.|.++|...|.... ++-| +|++++..+++++|+++
T Consensus 345 v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G 424 (542)
T COG1111 345 VEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424 (542)
T ss_pred CCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC
Confidence 12478998888887765 35678999999999999999999999998875 6655 58999999999999975
Q ss_pred CCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHh
Q psy5647 564 SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSS 643 (755)
Q Consensus 564 ~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~ 643 (755)
.-. +|++|.+|.+|||++.++-||+|||.-+|...+||+||.+|. +.-.||-|+++||-||.-|....+|..-..
T Consensus 425 e~n--VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~ 499 (542)
T COG1111 425 EYN--VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMI 499 (542)
T ss_pred Cce--EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHH
Confidence 543 789999999999999999999999999999999999999984 666788899999999999999888876555
Q ss_pred hhhC
Q psy5647 644 CVVD 647 (755)
Q Consensus 644 ~vv~ 647 (755)
..+.
T Consensus 500 e~i~ 503 (542)
T COG1111 500 ESIR 503 (542)
T ss_pred HHHH
Confidence 4443
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.7e-28 Score=274.26 Aligned_cols=366 Identities=19% Similarity=0.244 Sum_probs=263.1
Q ss_pred hhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhH
Q psy5647 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 142 ~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW 220 (755)
.....|||||.+++..+..... . .+.+++..++|.|||+.++.++..+.. ++|||||. .|+.||
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~----~-~~~gvivlpTGaGKT~va~~~~~~~~~----------~~Lvlv~~~~L~~Qw 96 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRR----T-ERRGVIVLPTGAGKTVVAAEAIAELKR----------STLVLVPTKELLDQW 96 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcc----c-CCceEEEeCCCCCHHHHHHHHHHHhcC----------CEEEEECcHHHHHHH
Confidence 3456899999999998876442 2 677899999999999999999977642 28999999 778999
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh--hhhhhcCCccEEEEeCCcccCCC
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH--ASVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~--~~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
.+.+.++++.....-.+.++.+.. .. ..|.|.||+++.+. ...+....|++||+||+|++...
T Consensus 97 ~~~~~~~~~~~~~~g~~~~~~~~~--------------~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~ 161 (442)
T COG1061 97 AEALKKFLLLNDEIGIYGGGEKEL--------------EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP 161 (442)
T ss_pred HHHHHHhcCCccccceecCceecc--------------CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH
Confidence 999999887542222333332210 00 25999999999885 45555558999999999998554
Q ss_pred ccHHHHHHHcccccc-EEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 299 ESQTYQALMGLKAKR-RVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 299 ~s~~~~al~~l~~~~-rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
.... .+..+...+ +++|||||...+......+..++.|-.+
T Consensus 162 ~~~~--~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy------------------------------------ 203 (442)
T COG1061 162 SYRR--ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY------------------------------------ 203 (442)
T ss_pred HHHH--HHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe------------------------------------
Confidence 3332 233345555 9999999986653333333333322111
Q ss_pred HHHhHhHHHHhcc-hhHhh-ccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhC
Q psy5647 378 LIGIVNRCLIRRT-SALLS-KYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455 (755)
Q Consensus 378 L~~~l~~~~lRRt-~~~v~-~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~n 455 (755)
... ++.+. .+|.+.....+.+.++..+...|.......... +.... . .....
T Consensus 204 ----------~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~--~~~~~----~---~~~~~------- 257 (442)
T COG1061 204 ----------EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFREL--LRARG----T---LRAEN------- 257 (442)
T ss_pred ----------ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhh--hhhhh----h---hhHHH-------
Confidence 111 11222 468889999999999999998888764432210 00000 0 00000
Q ss_pred ChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHH
Q psy5647 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535 (755)
Q Consensus 456 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~ 535 (755)
...........|+..+..++.... .+.+++||+.+....+.+...+.
T Consensus 258 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~ 304 (442)
T COG1061 258 -------------------------------EARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFL 304 (442)
T ss_pred -------------------------------HHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhc
Confidence 001122334566667777766543 57899999999999999999999
Q ss_pred hcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhc-cCCCC
Q psy5647 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR-DGQKK 614 (755)
Q Consensus 536 ~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R-~GQ~k 614 (755)
..|+ ...++|.++..+|.+++++|..+. ..+|++++++++|+|++.|+.+|+..|.-++..+.|++||+.| ..+++
T Consensus 305 ~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~ 381 (442)
T COG1061 305 APGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKE 381 (442)
T ss_pred CCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCC
Confidence 8888 889999999999999999999865 4578999999999999999999999999999999999999999 55555
Q ss_pred c--EEEEEEeeCCCHHHHHHHHHHH
Q psy5647 615 P--CFVYRFLSTGSIEEKMMQRQAH 637 (755)
Q Consensus 615 ~--V~Vyrlv~~gTiEEkI~~r~~~ 637 (755)
. +..|-++..++.++.+..+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 382 DTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ceEEEEEEeecCcccccchhhhhhh
Confidence 5 6678888888888887766554
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.3e-27 Score=272.33 Aligned_cols=339 Identities=15% Similarity=0.167 Sum_probs=222.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|||||.+++..+.. +..+|+..++|+|||+.++.++..++..+. .++||+||+ .|+.||.++
T Consensus 113 ~~~r~~Q~~av~~~l~---------~~~~il~apTGsGKT~i~~~l~~~~~~~~~------~~vLilvpt~eL~~Q~~~~ 177 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK---------NNRRLLNLPTSAGKSLIQYLLSRYYLENYE------GKVLIIVPTTSLVTQMIDD 177 (501)
T ss_pred CCCCHHHHHHHHHHHh---------cCceEEEeCCCCCHHHHHHHHHHHHHhcCC------CeEEEEECcHHHHHHHHHH
Confidence 5899999999976643 345799999999999998877655544331 269999999 889999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
|.+|... ......+.++.... ...+|+|+|++++....... -..+++||+||||++... ..
T Consensus 178 l~~~~~~~~~~~~~i~~g~~~~---------------~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~ 239 (501)
T PHA02558 178 FVDYRLFPREAMHKIYSGTAKD---------------TDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SL 239 (501)
T ss_pred HHHhccccccceeEEecCcccC---------------CCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hH
Confidence 9998642 12222333332211 23579999999987544322 237899999999999653 23
Q ss_pred HHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5647 303 YQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381 (755)
Q Consensus 303 ~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~ 381 (755)
...+..+ +++++++|||||....... ..+..++.| +... .+ ..++
T Consensus 240 ~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~----------------i~~~----v~----------~~~l--- 285 (501)
T PHA02558 240 TSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGD----------------IFKP----VT----------TSQL--- 285 (501)
T ss_pred HHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCC----------------ceEE----ec----------HHHH---
Confidence 4445556 5788999999995433211 111111111 1000 00 0001
Q ss_pred HhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhh
Q psy5647 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461 (755)
Q Consensus 382 l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~ 461 (755)
+. ..++.+.....+.+..++.....+ .... .. ..+..++
T Consensus 286 i~-----------~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~~--------~~--~~~~~l~------- 324 (501)
T PHA02558 286 ME-----------EGQVTDLKINSIFLRYPDEDRVKL-------------KGED--------YQ--EEIKYIT------- 324 (501)
T ss_pred Hh-----------CCCcCCceEEEEeccCCHHHhhhh-------------cccc--------hH--HHHHHHh-------
Confidence 00 012222223334444443211100 0000 00 0000011
Q ss_pred hhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcE
Q psy5647 462 DKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKY 541 (755)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~ 541 (755)
....+...+..++..+. ..+.+++||+..++..+.|.+.|+..|+++
T Consensus 325 --------------------------------~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v 371 (501)
T PHA02558 325 --------------------------------SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKV 371 (501)
T ss_pred --------------------------------ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCE
Confidence 11223334444444443 346789999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC-cEEEEE
Q psy5647 542 VRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK-PCFVYR 620 (755)
Q Consensus 542 ~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k-~V~Vyr 620 (755)
..++|+++.++|.++++.|+++. ..|++.|++..|+|+|++..++||+++|..+...+.|++||++|.|..| .|.||.
T Consensus 372 ~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D 450 (501)
T PHA02558 372 YYVSGEVDTEDRNEMKKIAEGGK-GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWD 450 (501)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEE
Confidence 99999999999999999998643 3466666699999999999999999999999999999999999998765 589999
Q ss_pred EeeCC
Q psy5647 621 FLSTG 625 (755)
Q Consensus 621 lv~~g 625 (755)
++..-
T Consensus 451 ~vD~~ 455 (501)
T PHA02558 451 IIDDL 455 (501)
T ss_pred eeccc
Confidence 98643
No 27
>KOG0354|consensus
Probab=99.94 E-value=8.2e-24 Score=238.24 Aligned_cols=442 Identities=17% Similarity=0.161 Sum_probs=251.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
-.||+||.+-++-. . +.++|+|.+||+|||+.|+.++..+++..+. .++++.+|+ .|+.|....
T Consensus 61 ~~lR~YQ~eivq~A---------L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-----~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 61 LELRNYQEELVQPA---------L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-----GKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred ccccHHHHHHhHHh---------h-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-----ceEEEeeCCchHHHHHHHH
Confidence 37999999999875 2 6799999999999999999999999988765 568999999 677888888
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcC---CccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKN---EVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~---~~~lvIiDEaH~lKn~~- 299 (755)
|...+-+ ..+....++..... .....| ...+|+++|.+.+.++....... .|.++|+|||||.....
T Consensus 126 ~~~~~~~-~~~T~~l~~~~~~~-~r~~i~-------~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 126 FSIYLIP-YSVTGQLGDTVPRS-NRGEIV-------ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HhhccCc-ccceeeccCccCCC-chhhhh-------cccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 8887654 34444434321111 111222 12479999999999876544333 48999999999975432
Q ss_pred -cHHHHHHHcc--ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCC--ChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 300 -SQTYQALMGL--KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILG--TAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 300 -s~~~~al~~l--~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~--~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
+...+.+..+ ...+.|+|||||- +++......+.=|.-. +. +...-...|..- +.....-.+ -.......
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~l--r~~~~i~v~-~~~~~~~~ 271 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEEL--REHVQIPVD-LSLCERDI 271 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHH--hccCcccCc-HHHhhhhh
Confidence 4555455444 3447899999998 6777666666555444 22 111112222210 000000001 11122223
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHH---
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK--- 451 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lr--- 451 (755)
-..|..++.+++.+-... .|.+....-- .|....-...- ....+... .....+..+....
T Consensus 272 ~~~f~~~i~p~l~~l~~~----~l~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~--~q~~~f~~~~~~~~~~ 334 (746)
T KOG0354|consen 272 EDPFGMIIEPLLQQLQEE----GLIEISDKST----------SYEQWVVQAEK-AAAPNGPE--NQRNCFYALHLRKYNL 334 (746)
T ss_pred hhhHHHHHHHHHHHHHhc----Cccccccccc----------cccchhhhhhh-hhccCCCc--cchhhHHHHHHHHHHH
Confidence 344555566655433211 1211110000 11110000000 00000000 0000011110000
Q ss_pred -HHhCChhhhhhhhhcCc---------------------cchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHH
Q psy5647 452 -KLCNHPDLVMDKIQTGA---------------------DGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509 (755)
Q Consensus 452 -k~~nhp~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~ 509 (755)
.+.+|---+.+...... ..+...+..+. ..........+|+..|.+++...
T Consensus 335 ~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~-------~l~~~~~~~npkle~l~~~l~e~ 407 (746)
T KOG0354|consen 335 ALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELE-------HLSLDPPKENPKLEKLVEILVEQ 407 (746)
T ss_pred HHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhh-------hhhcCCCccChhHHHHHHHHHHH
Confidence 00111000000000000 00000000000 00000113467888777777655
Q ss_pred hc-cCCCEEEEEEechhHHHHHHHHHHh---cCCcEEEEcC--------CCCHHHHHHHHHHHccCCCceEEEeecCCcc
Q psy5647 510 KM-TTDDKIVLVSNYTQTLDLFERLSKL---RGYKYVRLDG--------SMTIKKRAKVVETFNKTSNEFIFMLSSKAGG 577 (755)
Q Consensus 510 ~~-~~~~KvlIFs~~~~~ld~l~~~L~~---~g~~~~~ldG--------~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg 577 (755)
.. .++.++|||+.+++..+.|..+|.. .|++...+-| +|+.++.+++++.|++|... +|++|.+|.
T Consensus 408 f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N--vLVATSV~E 485 (746)
T KOG0354|consen 408 FEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN--VLVATSVAE 485 (746)
T ss_pred hhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc--EEEEecchh
Confidence 43 4567999999999999999988872 2455555554 57889999999999985554 789999999
Q ss_pred cccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHH-HHHHHHhHhhhhC
Q psy5647 578 CGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQR-QAHKKALSSCVVD 647 (755)
Q Consensus 578 ~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r-~~~K~~l~~~vv~ 647 (755)
+|||+..||-||.||..-||...+||+|| +| ++.-.++-|.+ ..|+.-+++ +..|..+....+.
T Consensus 486 EGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 486 EGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred ccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999 67 44444444444 444444433 4455555555544
No 28
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=1.8e-25 Score=270.74 Aligned_cols=361 Identities=16% Similarity=0.181 Sum_probs=214.8
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|||||.++|..+.+.+. .+.+++++.+.+|+|||+++++++..+++.+. .+++||++|. .|+.||.++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~----~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~-----~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIV----EGQREILLAMATGTGKTRTAIALMYRLLKAKR-----FRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHH----hccCCeEEEeCCCCCHHHHHHHHHHHHHhcCc-----cCeEEEEecHHHHHHHHHHH
Confidence 4799999999998887663 34578999999999999999999998887653 3679999998 788999999
Q ss_pred HHHHhCCCceEE-EecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh-------hhhcCCccEEEEeCCccc
Q psy5647 224 ITKWLGGRVAAL-PIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS-------VLHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 224 ~~kw~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~-------~l~~~~~~lvIiDEaH~l 295 (755)
|..+.......+ .+.+. ..+.... ......|+|+|+.++.+... .+....||+||+|||||.
T Consensus 483 F~~~~~~~~~~~~~i~~i------~~L~~~~----~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDI------KGLEDKF----PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred HHhcccccccchhhhhch------hhhhhhc----ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 988643211111 11110 0111110 11345799999999865321 122346899999999996
Q ss_pred CCCc----------------cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCC
Q psy5647 296 KNCE----------------SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359 (755)
Q Consensus 296 Kn~~----------------s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~ 359 (755)
...+ ...++.+.......+|+|||||..+. .+ .|+.|+....
T Consensus 553 ~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t-~~---------------------~FG~pv~~Ys 610 (1123)
T PRK11448 553 YTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT-TE---------------------IFGEPVYTYS 610 (1123)
T ss_pred CccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch-hH---------------------HhCCeeEEee
Confidence 3211 13455554443468899999997532 11 1222321111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhH-hHHHHhcchhHhhccCCCceEEEEE----EcCC-HHHHHHHHHHHhhHHHHHHHcC
Q psy5647 360 DSCASDAERTKANERLEQLIGIV-NRCLIRRTSALLSKYLPVKTEQVVC----IKMT-DLQKELYTNLIKSDAVRRTMKG 433 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~L~~~l-~~~~lRRt~~~v~~~LP~k~e~vv~----~~ls-~~q~~lY~~~~~~~~~~~~~~~ 433 (755)
+...+ ..+++ .+-||....... +... ..+...|+..... +..
T Consensus 611 ------------------l~eAI~DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~------i~~ 658 (1123)
T PRK11448 611 ------------------YREAVIDGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE------IDL 658 (1123)
T ss_pred ------------------HHHHHhcCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh------hhh
Confidence 00001 11111 111332222111 0011 1111222211000 000
Q ss_pred CCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccC
Q psy5647 434 GENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTT 513 (755)
Q Consensus 434 ~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~ 513 (755)
.. .|.-+ . + ....+ .......+.--.++..+...+....
T Consensus 659 ~~--------------------l~d~~----~-----~------~~~~~------~~~vi~~~~~~~i~~~l~~~l~~~~ 697 (1123)
T PRK11448 659 AT--------------------LEDEV----D-----F------EVEDF------NRRVITESFNRVVCEELAKYLDPTG 697 (1123)
T ss_pred cc--------------------CcHHH----h-----h------hHHHH------HHHHhhHHHHHHHHHHHHHHHhccC
Confidence 00 00000 0 0 00000 0000000111123344444444344
Q ss_pred CCEEEEEEechhHHHHHHHHHHhc------CC---cEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCC
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLR------GY---KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIG 584 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~------g~---~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~ 584 (755)
+.|+||||......+.+.+.|... ++ .+..++|+++ ++.+++++|.++..+ .+++|++..++|+|.+.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCCCccc
Confidence 579999999999988887776643 22 3567999875 678899999875544 67899999999999999
Q ss_pred CCEEEEeCCCCCCCcHHHHhHhhhccCC---CCcEEEEEEe
Q psy5647 585 ANRLVMFDPDWNPANDDQAMARVWRDGQ---KKPCFVYRFL 622 (755)
Q Consensus 585 a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ---~k~V~Vyrlv 622 (755)
++.||+++|.-++..+.|++||+.|..- |..+.||.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5667787764
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=1.2e-23 Score=236.84 Aligned_cols=319 Identities=15% Similarity=0.171 Sum_probs=211.6
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+.|+|.+++..++ .+..+|+...+|+|||+.++..+...+...+.......++||++|. .|+.|+.+.
T Consensus 22 ~~p~~iQ~~ai~~~~---------~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~ 92 (434)
T PRK11192 22 TRPTAIQAEAIPPAL---------DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQ 92 (434)
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHH
Confidence 357899999998874 3467999999999999998776655443332222223469999999 678899888
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+..|... .+.+..+.|+........ .+ ....+|+|+|++.+..... .+....+++||+||||++-...
T Consensus 93 ~~~l~~~~~~~v~~~~gg~~~~~~~~--~l------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~ 164 (434)
T PRK11192 93 ARELAKHTHLDIATITGGVAYMNHAE--VF------SENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGF 164 (434)
T ss_pred HHHHHccCCcEEEEEECCCCHHHHHH--Hh------cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCc
Confidence 8887653 456666777654332211 11 1235799999998875432 2233467899999999986533
Q ss_pred -cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
.........+ .....+++|||+-...+.++.. .+..
T Consensus 165 ~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~------------------~~~~------------------------ 202 (434)
T PRK11192 165 AQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE------------------RLLN------------------------ 202 (434)
T ss_pred HHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH------------------HHcc------------------------
Confidence 1222222222 2345699999974322222111 0000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
-| . .+.+..+.... .. . .+
T Consensus 203 --------------------~~--~--~i~~~~~~~~~------------------~~-------i-----------~~- 221 (434)
T PRK11192 203 --------------------DP--V--EVEAEPSRRER------------------KK-------I-----------HQ- 221 (434)
T ss_pred --------------------CC--E--EEEecCCcccc------------------cC-------c-----------eE-
Confidence 00 0 00000000000 00 0 00
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
.+. .......|..+|..++.. ....++|||++....++.+...|...
T Consensus 222 -----------------------~~~-------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~ 268 (434)
T PRK11192 222 -----------------------WYY-------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKA 268 (434)
T ss_pred -----------------------EEE-------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 000 000012344445555432 24679999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
|+.+..++|+++..+|..+++.|+++... +|++|.+++.|||++.+++||+||+++++..|.|++||++|.|.+..+.
T Consensus 269 ~~~~~~l~g~~~~~~R~~~l~~f~~G~~~--vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai 346 (434)
T PRK11192 269 GINCCYLEGEMVQAKRNEAIKRLTDGRVN--VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAI 346 (434)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHhCCCCc--EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEE
Confidence 99999999999999999999999975544 7899999999999999999999999999999999999999999875544
Q ss_pred E
Q psy5647 618 V 618 (755)
Q Consensus 618 V 618 (755)
+
T Consensus 347 ~ 347 (434)
T PRK11192 347 S 347 (434)
T ss_pred E
Confidence 4
No 30
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=1.1e-23 Score=241.81 Aligned_cols=324 Identities=20% Similarity=0.235 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHH-HHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLM-WTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall-~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.+.|+|.+++..+. .++.+|+..++|+|||++.+.-+ ..+..+..........+|||||+ .|..|+.++
T Consensus 152 ~pt~iQ~~aip~~l---------~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~ 222 (545)
T PTZ00110 152 EPTPIQVQGWPIAL---------SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQ 222 (545)
T ss_pred CCCHHHHHHHHHHh---------cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHH
Confidence 57899999987763 46789999999999999876543 33333221111111348999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHH-HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAE-IDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.++... .+....+.++.... ....+. ...+|+|+|++.+..... .+.-..+++||+||||++-...
T Consensus 223 ~~~~~~~~~i~~~~~~gg~~~~~q~~~l~---------~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g 293 (545)
T PTZ00110 223 CNKFGASSKIRNTVAYGGVPKRGQIYALR---------RGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG 293 (545)
T ss_pred HHHHhcccCccEEEEeCCCCHHHHHHHHH---------cCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc
Confidence 9998764 45555566654322 222221 235799999998865432 1222357899999999986543
Q ss_pred --cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
....+.+..++ ....+++|||.- .++..+.. .+
T Consensus 294 f~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~---------------~l------------------------- 329 (545)
T PTZ00110 294 FEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR---------------DL------------------------- 329 (545)
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH---------------HH-------------------------
Confidence 23333444443 345689999951 11111110 00
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
+ + ..|. .+.+.... . ..... ++
T Consensus 330 ---------~-~--------~~~v----~i~vg~~~--l----------------~~~~~-------------i~----- 351 (545)
T PTZ00110 330 ---------C-K--------EEPV----HVNVGSLD--L----------------TACHN-------------IK----- 351 (545)
T ss_pred ---------h-c--------cCCE----EEEECCCc--c----------------ccCCC-------------ee-----
Confidence 0 0 0000 00000000 0 00000 00
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
..+ .......|...|..++..+.. .+.++|||++.....+.|...|..
T Consensus 352 -----------------------q~~--------~~~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~ 399 (545)
T PTZ00110 352 -----------------------QEV--------FVVEEHEKRGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRL 399 (545)
T ss_pred -----------------------EEE--------EEEechhHHHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHH
Confidence 000 000112344445555555432 468999999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.|+....++|+++..+|.++++.|+++... +|++|.++++|||+..++.||+||+|+++..+.|++||++|.|.+-.+
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~~G~~~--ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a 477 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFKTGKSP--IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS 477 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHhcCCCc--EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999999999986554 789999999999999999999999999999999999999999986544
Q ss_pred EEEEEeeCC
Q psy5647 617 FVYRFLSTG 625 (755)
Q Consensus 617 ~Vyrlv~~g 625 (755)
|.|++.+
T Consensus 478 --i~~~~~~ 484 (545)
T PTZ00110 478 --YTFLTPD 484 (545)
T ss_pred --EEEECcc
Confidence 5566664
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.1e-23 Score=238.78 Aligned_cols=307 Identities=16% Similarity=0.211 Sum_probs=207.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.+++.-+. .++.+++..++|+|||+.....+. . .+ ..+|||+|. +|+.+|.+.
T Consensus 10 ~~~r~~Q~~ai~~~l---------~g~dvlv~apTGsGKTl~y~lp~l--~-~~-------~~~lVi~P~~~L~~dq~~~ 70 (470)
T TIGR00614 10 SSFRPVQLEVINAVL---------LGRDCFVVMPTGGGKSLCYQLPAL--C-SD-------GITLVISPLISLMEDQVLQ 70 (470)
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEcCCCCcHhHHHHHHHH--H-cC-------CcEEEEecHHHHHHHHHHH
Confidence 478999999999874 345899999999999987654432 2 11 248999999 788888888
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh---hhh-hcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA---SVL-HKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~---~~l-~~~~~~lvIiDEaH~lKn~~ 299 (755)
+... .+....+.+.........+..... ....+++++|++.+.... ..+ ....+++||+||||++....
T Consensus 71 l~~~---gi~~~~l~~~~~~~~~~~i~~~~~----~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 71 LKAS---GIPATFLNSSQSKEQQKNVLTDLK----DGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred HHHc---CCcEEEEeCCCCHHHHHHHHHHHh----cCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccc
Confidence 8764 234444555443332222221111 234689999999886432 333 44678999999999986432
Q ss_pred c---HHHHHH----HccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHH
Q psy5647 300 S---QTYQAL----MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372 (755)
Q Consensus 300 s---~~~~al----~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~ 372 (755)
. ..+..+ ..+.....++|||||-.....++...+.+-+|..+. ..|.
T Consensus 144 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~------~s~~-------------------- 197 (470)
T TIGR00614 144 HDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC------TSFD-------------------- 197 (470)
T ss_pred cccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe------CCCC--------------------
Confidence 1 122222 234566789999999665555554444332221100 0000
Q ss_pred HHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 373 ~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
-|.. ...+.-..
T Consensus 198 -------------------------r~nl-~~~v~~~~------------------------------------------ 209 (470)
T TIGR00614 198 -------------------------RPNL-YYEVRRKT------------------------------------------ 209 (470)
T ss_pred -------------------------CCCc-EEEEEeCC------------------------------------------
Confidence 0000 00000000
Q ss_pred HhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHHHHH
Q psy5647 453 LCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFE 531 (755)
Q Consensus 453 ~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld~l~ 531 (755)
+. .+..++..+. ...+.++||||+.....+.+.
T Consensus 210 -------------------------------------------~~---~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la 243 (470)
T TIGR00614 210 -------------------------------------------PK---ILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVT 243 (470)
T ss_pred -------------------------------------------cc---HHHHHHHHHHHhcCCCceEEEECcHHHHHHHH
Confidence 00 0111111111 134667899999999999999
Q ss_pred HHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccC
Q psy5647 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611 (755)
Q Consensus 532 ~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~G 611 (755)
..|...|+.+..++|+++.++|.++++.|.++... +|++|.+.|.|||++.++.||+||+|.++..|.|++||++|.|
T Consensus 244 ~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~--vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 244 ASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ--VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321 (470)
T ss_pred HHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc--EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC
Confidence 99999999999999999999999999999975544 6799999999999999999999999999999999999999999
Q ss_pred CCCcEEEE
Q psy5647 612 QKKPCFVY 619 (755)
Q Consensus 612 Q~k~V~Vy 619 (755)
+...+.+|
T Consensus 322 ~~~~~~~~ 329 (470)
T TIGR00614 322 LPSECHLF 329 (470)
T ss_pred CCceEEEE
Confidence 98776654
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=1.4e-23 Score=237.97 Aligned_cols=315 Identities=16% Similarity=0.251 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.+.|+|.+++..++ .+..+|+..++|+|||+..+..+...+..... ...+||+||+ .|..||.+++
T Consensus 26 ~~t~iQ~~ai~~~l---------~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~----~~~~lil~PtreLa~Q~~~~~ 92 (460)
T PRK11776 26 EMTPIQAQSLPAIL---------AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRF----RVQALVLCPTRELADQVAKEI 92 (460)
T ss_pred CCCHHHHHHHHHHh---------cCCCEEEECCCCCcHHHHHHHHHHHHhhhccC----CceEEEEeCCHHHHHHHHHHH
Confidence 57899999999874 35679999999999998876666555443221 1258999999 7889999999
Q ss_pred HHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
.++... .+.+..+.|+...... ...+ ....+|+|+|++.+..+... +.-..+++||+||||++-+..
T Consensus 93 ~~~~~~~~~~~v~~~~Gg~~~~~~--~~~l------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~ 164 (460)
T PRK11776 93 RRLARFIPNIKVLTLCGGVPMGPQ--IDSL------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGF 164 (460)
T ss_pred HHHHhhCCCcEEEEEECCCChHHH--HHHh------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCc
Confidence 987642 4666667776543221 1111 13468999999998765432 222467899999999986543
Q ss_pred -cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhc-cCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY-ETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 -s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f-~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
......+..+. ....+++|||+-. .+..+ . ..| ..|...
T Consensus 165 ~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~l---~---------------~~~~~~~~~i------------------- 206 (460)
T PRK11776 165 QDAIDAIIRQAPARRQTLLFSATYPE-GIAAI---S---------------QRFQRDPVEV------------------- 206 (460)
T ss_pred HHHHHHHHHhCCcccEEEEEEecCcH-HHHHH---H---------------HHhcCCCEEE-------------------
Confidence 22333344443 3457999999721 11111 0 000 000000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
.-.. ....+......+.+
T Consensus 207 -----------~~~~---~~~~~~i~~~~~~~------------------------------------------------ 224 (460)
T PRK11776 207 -----------KVES---THDLPAIEQRFYEV------------------------------------------------ 224 (460)
T ss_pred -----------EECc---CCCCCCeeEEEEEe------------------------------------------------
Confidence 0000 00000000000000
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
....|+..|..++.. ..+.++||||+.....+.+.+.|..
T Consensus 225 -------------------------------------~~~~k~~~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~ 264 (460)
T PRK11776 225 -------------------------------------SPDERLPALQRLLLH---HQPESCVVFCNTKKECQEVADALNA 264 (460)
T ss_pred -------------------------------------CcHHHHHHHHHHHHh---cCCCceEEEECCHHHHHHHHHHHHh
Confidence 011244455555543 2357899999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.|+.+..++|+++..+|..+++.|+++... +|++|+++++|||++++++||+||.|.++..|.|++||++|.|+.-
T Consensus 265 ~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G-- 340 (460)
T PRK11776 265 QGFSALALHGDLEQRDRDQVLVRFANRSCS--VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG-- 340 (460)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--
Confidence 999999999999999999999999976544 7899999999999999999999999999999999999999999764
Q ss_pred EEEEEeeCC
Q psy5647 617 FVYRFLSTG 625 (755)
Q Consensus 617 ~Vyrlv~~g 625 (755)
..|.|+..+
T Consensus 341 ~ai~l~~~~ 349 (460)
T PRK11776 341 LALSLVAPE 349 (460)
T ss_pred eEEEEEchh
Confidence 345566554
No 33
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.6e-23 Score=236.71 Aligned_cols=315 Identities=14% Similarity=0.210 Sum_probs=209.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCC--CCCCCeEEEEeCC-cchHhHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA--KPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~--~p~~~~~LIV~P~-sll~nW~ 221 (755)
..+.|+|.+++..++ .+..+|+..++|+|||+..+..+...+...... .....++|||||+ .|..||.
T Consensus 22 ~~pt~iQ~~ai~~il---------~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~ 92 (456)
T PRK10590 22 REPTPIQQQAIPAVL---------EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIG 92 (456)
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHH
Confidence 367899999998874 356799999999999999877665555432211 1112368999999 7889999
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCC
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~ 298 (755)
+++.++... .+....+.|+...+.. ...+ ....+|+|+|++.+..... .+.-..+++||+||||++-..
T Consensus 93 ~~~~~~~~~~~~~~~~~~gg~~~~~~--~~~l------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~ 164 (456)
T PRK10590 93 ENVRDYSKYLNIRSLVVFGGVSINPQ--MMKL------RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDM 164 (456)
T ss_pred HHHHHHhccCCCEEEEEECCcCHHHH--HHHH------cCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhcc
Confidence 999998764 4555566665433221 1111 1246899999998865432 223346889999999998653
Q ss_pred c--cHHHHHHHcccc-ccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHH
Q psy5647 299 E--SQTYQALMGLKA-KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375 (755)
Q Consensus 299 ~--s~~~~al~~l~~-~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~ 375 (755)
. ......+..+.. ...+++|||+-. .+.++.. .+ +.+|....
T Consensus 165 ~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---~~--------------~~~~~~i~----------------- 209 (456)
T PRK10590 165 GFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE---KL--------------LHNPLEIE----------------- 209 (456)
T ss_pred ccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH---HH--------------cCCCeEEE-----------------
Confidence 3 222233444433 457999999622 1111110 00 00000000
Q ss_pred HHHHHhHhHHHHhcchhHhhccCCCceE-EEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 376 EQLIGIVNRCLIRRTSALLSKYLPVKTE-QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 376 ~~L~~~l~~~~lRRt~~~v~~~LP~k~e-~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
+.++ ...+.... .+.++
T Consensus 210 ----------~~~~------~~~~~~i~~~~~~~---------------------------------------------- 227 (456)
T PRK10590 210 ----------VARR------NTASEQVTQHVHFV---------------------------------------------- 227 (456)
T ss_pred ----------Eecc------cccccceeEEEEEc----------------------------------------------
Confidence 0000 00000000 00000
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
....|..+|..++.. ....++|||++.....+.+.+.|
T Consensus 228 ---------------------------------------~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L 265 (456)
T PRK10590 228 ---------------------------------------DKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQL 265 (456)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHH
Confidence 001122223333322 33579999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
...|+.+..++|.++..+|.++++.|.++... +|++|++++.|||+.++++||+||++.++..|.|++||++|.|.+-
T Consensus 266 ~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 266 NKDGIRSAAIHGNKSQGARTRALADFKSGDIR--VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 99999999999999999999999999986543 7899999999999999999999999999999999999999999875
Q ss_pred cEE
Q psy5647 615 PCF 617 (755)
Q Consensus 615 ~V~ 617 (755)
.+.
T Consensus 344 ~ai 346 (456)
T PRK10590 344 EAL 346 (456)
T ss_pred eEE
Confidence 443
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.9e-23 Score=239.08 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=209.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH-HcCC--CCCCCCCeEEEEeCC-cchHhH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQGP--LAKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~-~~~~--~~~p~~~~~LIV~P~-sll~nW 220 (755)
..+.|+|.+++..++ .++.+|+..++|+|||+..+..+...+ .... ........+|||+|+ .|..|+
T Consensus 142 ~~ptpiQ~~aip~il---------~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 142 EFPTPIQMQAIPAAL---------SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred CCCCHHHHHHHHHHh---------cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 468899999998874 356899999999999998876554332 2111 011112468999999 677888
Q ss_pred HHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCC
Q psy5647 221 CNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 221 ~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn 297 (755)
.+++..+..+ .+....+.|+..... .+... ....+|+|+|++.+..... .+.-....+||+||||++-.
T Consensus 213 ~~~~~~l~~~~~~~~~~~~gG~~~~~--q~~~l------~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~ 284 (518)
T PLN00206 213 EDQAKVLGKGLPFKTALVVGGDAMPQ--QLYRI------QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLE 284 (518)
T ss_pred HHHHHHHhCCCCceEEEEECCcchHH--HHHHh------cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhh
Confidence 8888887654 345555555543221 11111 1235899999998865432 22234678999999999865
Q ss_pred Cc--cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHH
Q psy5647 298 CE--SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375 (755)
Q Consensus 298 ~~--s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~ 375 (755)
.. ....+.+..+.....+++|||.-. .+..+ ...+.. .++.
T Consensus 285 ~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~l---~~~~~~--------------~~~~------------------- 327 (518)
T PLN00206 285 RGFRDQVMQIFQALSQPQVLLFSATVSP-EVEKF---ASSLAK--------------DIIL------------------- 327 (518)
T ss_pred cchHHHHHHHHHhCCCCcEEEEEeeCCH-HHHHH---HHHhCC--------------CCEE-------------------
Confidence 32 344445556677788999999632 11111 111000 0000
Q ss_pred HHHHHhHhHHHHhcchhHhhccCCCc--eEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 376 EQLIGIVNRCLIRRTSALLSKYLPVK--TEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 376 ~~L~~~l~~~~lRRt~~~v~~~LP~k--~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
+.... ...|.. ...++++.
T Consensus 328 -----------i~~~~----~~~~~~~v~q~~~~~~-------------------------------------------- 348 (518)
T PLN00206 328 -----------ISIGN----PNRPNKAVKQLAIWVE-------------------------------------------- 348 (518)
T ss_pred -----------EEeCC----CCCCCcceeEEEEecc--------------------------------------------
Confidence 00000 000000 01111111
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
...|...|..++.... ....++|||++.....+.+...
T Consensus 349 -----------------------------------------~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~ 386 (518)
T PLN00206 349 -----------------------------------------TKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANA 386 (518)
T ss_pred -----------------------------------------chhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHH
Confidence 0111122223333221 1235899999999999999999
Q ss_pred HHh-cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCC
Q psy5647 534 SKL-RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612 (755)
Q Consensus 534 L~~-~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ 612 (755)
|.. .|+.+..++|+++.++|..+++.|.++... +|++|.+++.|||++.+++||+||+|.++..|.|++||++|.|.
T Consensus 387 L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~--ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 387 ITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP--VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGE 464 (518)
T ss_pred HhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCC
Confidence 875 699999999999999999999999986554 78999999999999999999999999999999999999999997
Q ss_pred CCcEEEEEEeeCC
Q psy5647 613 KKPCFVYRFLSTG 625 (755)
Q Consensus 613 ~k~V~Vyrlv~~g 625 (755)
.- .+|.|++.+
T Consensus 465 ~G--~ai~f~~~~ 475 (518)
T PLN00206 465 KG--TAIVFVNEE 475 (518)
T ss_pred Ce--EEEEEEchh
Confidence 54 344566553
No 35
>KOG1123|consensus
Probab=99.93 E-value=7e-25 Score=230.84 Aligned_cols=340 Identities=20% Similarity=0.304 Sum_probs=234.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~~ 222 (755)
...|||||...+..|+-. ...+.||+.-++|.|||+..++.+.+.. +++||+|-++ -+.||..
T Consensus 300 st~iRpYQEksL~KMFGN------gRARSGiIVLPCGAGKtLVGvTAa~tik----------K~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKTLVGVTAACTIK----------KSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred ccccCchHHHHHHHHhCC------CcccCceEEEecCCCCceeeeeeeeeec----------ccEEEEecCccCHHHHHH
Confidence 578999999999998642 2356689999999999999998876653 4589999885 4799999
Q ss_pred HHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh----------hhhhhhcCCccEEEEeC
Q psy5647 223 EITKWLGGRV-AALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRS----------HASVLHKNEVGLVLCDE 291 (755)
Q Consensus 223 E~~kw~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~----------~~~~l~~~~~~lvIiDE 291 (755)
+|..|..-.- .+.......++. .....+|+|+||.|+.. ..+.+....|+++|+||
T Consensus 364 Qfk~wsti~d~~i~rFTsd~Ke~-------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDE 430 (776)
T KOG1123|consen 364 QFKQWSTIQDDQICRFTSDAKER-------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDE 430 (776)
T ss_pred HHHhhcccCccceEEeecccccc-------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeeh
Confidence 9999976321 122222211110 12456799999999853 34677788999999999
Q ss_pred CcccCCCccHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhh-cCCCCCChHHHHHhccCccccCCCCCCCHHHHH
Q psy5647 292 GHRLKNCESQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFV-NQGILGTAQEFRKQYETPILRGQDSCASDAERT 369 (755)
Q Consensus 292 aH~lKn~~s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl-~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~ 369 (755)
.|-+ -++.++.+..+ .+...++||||-+..+ |=..=++|| .|.++. +
T Consensus 431 VHvv---PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE--------------------A------ 479 (776)
T KOG1123|consen 431 VHVV---PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE--------------------A------ 479 (776)
T ss_pred hccc---hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh--------------------c------
Confidence 9987 45666655554 7888999999988753 112223443 333221 0
Q ss_pred HHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHH
Q psy5647 370 KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITS 449 (755)
Q Consensus 370 ~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 449 (755)
+..+|.. ..++....-.-|||+||++ +|+.++....-++.+.
T Consensus 480 ----nWmdL~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr~lL----------------- 521 (776)
T KOG1123|consen 480 ----NWMDLQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRKRMLL----------------- 521 (776)
T ss_pred ----cHHHHHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhhhhee-----------------
Confidence 0111111 1123344556789999985 6666654332111110
Q ss_pred HHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHH
Q psy5647 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDL 529 (755)
Q Consensus 450 Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~ 529 (755)
.+-...|++...-|+.... ..|+|+||||...-.|..
T Consensus 522 ------------------------------------------yvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~ 558 (776)
T KOG1123|consen 522 ------------------------------------------YVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKE 558 (776)
T ss_pred ------------------------------------------eecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHH
Confidence 0011345666555555443 579999999998766544
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHhHhhh
Q psy5647 530 FERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAMARVW 608 (755)
Q Consensus 530 l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~gR~~ 608 (755)
.. -+.|-+ .|.|.++..+|.++++.|+.++...-+++| ++|.+.++|+.||.+|-...+. +.....||+||+-
T Consensus 559 YA---ikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRIL 632 (776)
T KOG1123|consen 559 YA---IKLGKP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRIL 632 (776)
T ss_pred HH---HHcCCc--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHH
Confidence 33 344444 478999999999999999987776666555 8999999999999999998876 6678899999999
Q ss_pred ccCCC----CcEEEEEEeeCCCHHHH
Q psy5647 609 RDGQK----KPCFVYRFLSTGSIEEK 630 (755)
Q Consensus 609 R~GQ~----k~V~Vyrlv~~gTiEEk 630 (755)
|--.. =+.+.|.|++++|.|-.
T Consensus 633 RAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 633 RAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHhhcCccccceeeeeeeecchHHHH
Confidence 97532 24889999999998743
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.2e-23 Score=236.04 Aligned_cols=320 Identities=16% Similarity=0.195 Sum_probs=211.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC---CCCCCCeEEEEeCC-cchHhHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL---AKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~---~~p~~~~~LIV~P~-sll~nW~ 221 (755)
.+.|.|.+++..++ .+..+|+..++|+|||+..+..+...+...+. .......+||++|+ .|..||.
T Consensus 30 ~pt~iQ~~aip~il---------~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~ 100 (423)
T PRK04837 30 NCTPIQALALPLTL---------AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIH 100 (423)
T ss_pred CCCHHHHHHHHHHh---------CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHH
Confidence 56799999998764 45789999999999999887666544433221 11112468999999 7889999
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCC
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~ 298 (755)
+++.++... .+.+..+.|+....... ... ....+|+|+|++.+..... .+.-..+.+||+||||++-..
T Consensus 101 ~~~~~l~~~~~~~v~~~~gg~~~~~~~--~~l------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~ 172 (423)
T PRK04837 101 ADAEPLAQATGLKLGLAYGGDGYDKQL--KVL------ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL 172 (423)
T ss_pred HHHHHHhccCCceEEEEECCCCHHHHH--HHh------cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc
Confidence 998887654 45666666664332211 111 1235899999998865542 233346889999999998653
Q ss_pred c--cHHHHHHHccc---cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 299 E--SQTYQALMGLK---AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 299 ~--s~~~~al~~l~---~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
. ......+..+. ....+++|||.-. .+.++.. . .+..
T Consensus 173 ~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~---------------~~~~-------------------- 214 (423)
T PRK04837 173 GFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--E---------------HMNN-------------------- 214 (423)
T ss_pred ccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--H---------------HCCC--------------------
Confidence 3 22222333332 2335788998621 1111100 0 0000
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
|. .+.+..... .... ++
T Consensus 215 -------------------------p~----~i~v~~~~~-------------------~~~~-------------i~-- 231 (423)
T PRK04837 215 -------------------------PE----YVEVEPEQK-------------------TGHR-------------IK-- 231 (423)
T ss_pred -------------------------CE----EEEEcCCCc-------------------CCCc-------------ee--
Confidence 00 000000000 0000 00
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
+. + .......|+..|..++.. ....++|||++.....+.+...
T Consensus 232 --~~-~-------------------------------~~~~~~~k~~~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~ 274 (423)
T PRK04837 232 --EE-L-------------------------------FYPSNEEKMRLLQTLIEE---EWPDRAIIFANTKHRCEEIWGH 274 (423)
T ss_pred --EE-E-------------------------------EeCCHHHHHHHHHHHHHh---cCCCeEEEEECCHHHHHHHHHH
Confidence 00 0 000112345555555543 3467999999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
|...|+++..++|+++.++|.++++.|+++... +|++|.+++.|||+++++.||+||+|+++..|.|++||++|.|+.
T Consensus 275 L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 275 LAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred HHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc--EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 999999999999999999999999999976554 789999999999999999999999999999999999999999976
Q ss_pred CcEEEEEEeeC
Q psy5647 614 KPCFVYRFLST 624 (755)
Q Consensus 614 k~V~Vyrlv~~ 624 (755)
-.+ +.|++.
T Consensus 353 G~a--i~~~~~ 361 (423)
T PRK04837 353 GHS--ISLACE 361 (423)
T ss_pred eeE--EEEeCH
Confidence 443 445554
No 37
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=6.7e-23 Score=239.01 Aligned_cols=305 Identities=18% Similarity=0.218 Sum_probs=207.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.+++..++ .+..++++.++|.|||+.+...+ +... +.++||+|. +|+.++.+.
T Consensus 12 ~~fr~~Q~~~i~~il---------~g~dvlv~~PTG~GKTl~y~lpa--l~~~--------g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 12 DDFRPGQEEIISHVL---------DGRDVLVVMPTGGGKSLCYQVPA--LLLK--------GLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEcCCCccHhHHHHHHH--HHcC--------CcEEEEcCCHHHHHHHHHH
Confidence 368999999998874 34689999999999999876443 2222 237999999 788889888
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh--hhhhhhcCCccEEEEeCCcccCCCc--
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRS--HASVLHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~--~~~~l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
+... + +.+..+.++........+..-.. ....+++++|++.+.. ....+....+++||+||||.+....
T Consensus 73 l~~~-g--i~~~~~~s~~~~~~~~~~~~~l~----~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRAA-G--VAAAYLNSTLSAKEQQDIEKALV----NGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHHc-C--CcEEEEeCCCCHHHHHHHHHHHh----CCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCc
Confidence 8774 2 44445555433222222211111 1346799999998854 2345556789999999999985422
Q ss_pred -c----HHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 300 -S----QTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 300 -s----~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
. +.......+.....++||||+-.....++...+.+-.+..+ ...|.
T Consensus 146 frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~------~~~~~---------------------- 197 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF------ITSFD---------------------- 197 (591)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE------ecCCC----------------------
Confidence 1 22222333445558999999866554444443332211100 00000
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
-|.....++. .
T Consensus 198 -----------------------r~nl~~~v~~-~--------------------------------------------- 208 (591)
T TIGR01389 198 -----------------------RPNLRFSVVK-K--------------------------------------------- 208 (591)
T ss_pred -----------------------CCCcEEEEEe-C---------------------------------------------
Confidence 0000000000 0
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
..+...+..++. ...+.+.||||+.....+.+...|
T Consensus 209 -----------------------------------------~~~~~~l~~~l~---~~~~~~~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 209 -----------------------------------------NNKQKFLLDYLK---KHRGQSGIIYASSRKKVEELAERL 244 (591)
T ss_pred -----------------------------------------CCHHHHHHHHHH---hcCCCCEEEEECcHHHHHHHHHHH
Confidence 001111222222 223678999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
...|+++..++|+++.++|..+++.|..+.. .+|++|.+.|.|||++.++.||+||+|+|+..+.|++||++|.|+..
T Consensus 245 ~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~--~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~ 322 (591)
T TIGR01389 245 ESQGISALAYHAGLSNKVRAENQEDFLYDDV--KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPA 322 (591)
T ss_pred HhCCCCEEEEECCCCHHHHHHHHHHHHcCCC--cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCc
Confidence 9999999999999999999999999987654 37899999999999999999999999999999999999999999776
Q ss_pred cEEE
Q psy5647 615 PCFV 618 (755)
Q Consensus 615 ~V~V 618 (755)
.+.+
T Consensus 323 ~~il 326 (591)
T TIGR01389 323 EAIL 326 (591)
T ss_pred eEEE
Confidence 6543
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=4e-23 Score=240.39 Aligned_cols=304 Identities=19% Similarity=0.218 Sum_probs=205.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.+++.-+. .+..+++..++|.|||+.....+ +... +.+|||+|. +|+.+|.+.
T Consensus 24 ~~~r~~Q~~ai~~il---------~g~dvlv~apTGsGKTl~y~lpa--l~~~--------g~tlVisPl~sL~~dqv~~ 84 (607)
T PRK11057 24 QQFRPGQQEIIDAVL---------SGRDCLVVMPTGGGKSLCYQIPA--LVLD--------GLTLVVSPLISLMKDQVDQ 84 (607)
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHH--HHcC--------CCEEEEecHHHHHHHHHHH
Confidence 368999999998764 45688999999999998765443 2222 248999999 788888888
Q ss_pred HHHHhCCCceEEEecCCCHH-HHHHHHHHHHHHhCCCCCCCEEEEehhhHhh--hhhhhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGGRVAALPIDGGSKA-EIDNKLNSFMQTYGRRPVNPILVISYETFRS--HASVLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~--~~~~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+... + +....+.++... .....+.... ....+++++|++.+.. ....+...++++||+||||.+-...
T Consensus 85 l~~~-g--i~~~~~~s~~~~~~~~~~~~~~~-----~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~ 156 (607)
T PRK11057 85 LLAN-G--VAAACLNSTQTREQQLEVMAGCR-----TGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGH 156 (607)
T ss_pred HHHc-C--CcEEEEcCCCCHHHHHHHHHHHh-----CCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccC
Confidence 8764 2 334444444322 2222222211 1345799999998863 3344555678999999999986432
Q ss_pred --cHHHHHHHc----cccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 300 --SQTYQALMG----LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 300 --s~~~~al~~----l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
...+..+.. +.....++||||+-.....++...+.+-+|..+. ..|.
T Consensus 157 ~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~------~~~~--------------------- 209 (607)
T PRK11057 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI------SSFD--------------------- 209 (607)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE------CCCC---------------------
Confidence 222333332 3456689999998655444444433322211000 0000
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
-|.. .+.+.-.
T Consensus 210 ------------------------r~nl-~~~v~~~-------------------------------------------- 220 (607)
T PRK11057 210 ------------------------RPNI-RYTLVEK-------------------------------------------- 220 (607)
T ss_pred ------------------------CCcc-eeeeeec--------------------------------------------
Confidence 0000 0000000
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
..+ +..++..+....+.++||||+.....+.+...
T Consensus 221 ------------------------------------------~~~---~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~ 255 (607)
T PRK11057 221 ------------------------------------------FKP---LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255 (607)
T ss_pred ------------------------------------------cch---HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHH
Confidence 000 01122222224578999999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
|...|+.+..++|+++.++|.++++.|.++... +|++|.+.|.|||++.++.||+||+|.+...+.|++||++|.|..
T Consensus 256 L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~ 333 (607)
T PRK11057 256 LQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ--IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (607)
T ss_pred HHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC--EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCC
Confidence 999999999999999999999999999875544 779999999999999999999999999999999999999999977
Q ss_pred CcEEE
Q psy5647 614 KPCFV 618 (755)
Q Consensus 614 k~V~V 618 (755)
..+.+
T Consensus 334 ~~~il 338 (607)
T PRK11057 334 AEAML 338 (607)
T ss_pred ceEEE
Confidence 55443
No 39
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=4.7e-23 Score=234.33 Aligned_cols=322 Identities=18% Similarity=0.264 Sum_probs=209.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCC---CCCCeEEEEeCC-cchHhH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK---PLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~---p~~~~~LIV~P~-sll~nW 220 (755)
..+.|||.+++..++ .+..+|++..+|+|||+..+..+...+...+... ....++|||+|+ .|..||
T Consensus 108 ~~~~~iQ~~ai~~~~---------~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 108 PYCTPIQAQVLGYTL---------AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHH
Confidence 368899999998764 4578999999999999887765544443332111 012468999999 788899
Q ss_pred HHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCC
Q psy5647 221 CNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 221 ~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn 297 (755)
.+++..+... .+.+..+.|+..... ....+. ....+|+|+|++++..... .+.-..+++||+||+|++.+
T Consensus 179 ~~~~~~l~~~~~~~v~~~~gg~~~~~--~~~~~~-----~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 179 AKDAAALTKYTGLNVMTFVGGMDFDK--QLKQLE-----ARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HHHHHHhhccCCCEEEEEEccCChHH--HHHHHh-----CCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHh
Confidence 9988887653 355666666533221 111111 1245899999999865432 12223578999999999866
Q ss_pred Cc--cHHHHHHHccc---cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHH
Q psy5647 298 CE--SQTYQALMGLK---AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372 (755)
Q Consensus 298 ~~--s~~~~al~~l~---~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~ 372 (755)
.. ......+..+. ....+++|||... ++.++... |+ ..|.
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~~--~~---------------~~~~----------------- 296 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLAKQ--WT---------------TDPA----------------- 296 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHHHH--hc---------------cCCE-----------------
Confidence 43 12223333332 3467999999532 22111100 00 0000
Q ss_pred HHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 373 ~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
.+.+..... .... ..
T Consensus 297 --------------------------------~v~~~~~~~-------------------~~~~--~~------------ 311 (475)
T PRK01297 297 --------------------------------IVEIEPENV-------------------ASDT--VE------------ 311 (475)
T ss_pred --------------------------------EEEeccCcC-------------------CCCc--cc------------
Confidence 000000000 0000 00
Q ss_pred HhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHH
Q psy5647 453 LCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER 532 (755)
Q Consensus 453 ~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~ 532 (755)
. .+ .....+.|...|..++.. ....++|||++.....+.+..
T Consensus 312 --~-------------------------~~--------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~ 353 (475)
T PRK01297 312 --Q-------------------------HV--------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEE 353 (475)
T ss_pred --E-------------------------EE--------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHH
Confidence 0 00 000012233344444432 335799999999999999999
Q ss_pred HHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCC
Q psy5647 533 LSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612 (755)
Q Consensus 533 ~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ 612 (755)
.|...|+.+..++|.++..+|.++++.|+++... +|++|++++.|||+.+++.||+||+++++..+.|++||++|.|+
T Consensus 354 ~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 354 RLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGA 431 (475)
T ss_pred HHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc--EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCC
Confidence 9999999999999999999999999999976544 78899999999999999999999999999999999999999998
Q ss_pred CCcEEEEEEeeC
Q psy5647 613 KKPCFVYRFLST 624 (755)
Q Consensus 613 ~k~V~Vyrlv~~ 624 (755)
.-. ++.|+..
T Consensus 432 ~g~--~i~~~~~ 441 (475)
T PRK01297 432 SGV--SISFAGE 441 (475)
T ss_pred Cce--EEEEecH
Confidence 654 3344543
No 40
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=5.3e-23 Score=237.03 Aligned_cols=321 Identities=17% Similarity=0.227 Sum_probs=212.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC---CCCCCCeEEEEeCC-cchHhH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL---AKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~---~~p~~~~~LIV~P~-sll~nW 220 (755)
..+.|.|.+++..++ .+..+|+..++|+|||+..+..+...+...+. ..+...++|||+|+ .|..|+
T Consensus 30 ~~ptpiQ~~~ip~~l---------~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi 100 (572)
T PRK04537 30 TRCTPIQALTLPVAL---------PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQI 100 (572)
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHH
Confidence 367899999998874 46789999999999999887765544332211 11112469999999 788999
Q ss_pred HHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccC
Q psy5647 221 CNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 221 ~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lK 296 (755)
.+++.+|... .+.+..+.|+........ +.. ...+|+|+|.+.|...... +....+++||+||||++-
T Consensus 101 ~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~---~l~-----~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 101 HKDAVKFGADLGLRFALVYGGVDYDKQRE---LLQ-----QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHhccCCceEEEEECCCCHHHHHH---HHh-----CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHh
Confidence 9999998764 456666777654332211 111 2358999999988765432 233457889999999985
Q ss_pred CCc--cHHHHHHHccc---cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHH
Q psy5647 297 NCE--SQTYQALMGLK---AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKA 371 (755)
Q Consensus 297 n~~--s~~~~al~~l~---~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~ 371 (755)
... ......+..+. ....+++|||.-. .+.++.. .++ ..|..
T Consensus 173 d~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~--~~l---------------~~p~~--------------- 219 (572)
T PRK04537 173 DLGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAY--EHM---------------NEPEK--------------- 219 (572)
T ss_pred hcchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHH--HHh---------------cCCcE---------------
Confidence 432 22223333343 3457899999522 1111100 000 00000
Q ss_pred HHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHH
Q psy5647 372 NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451 (755)
Q Consensus 372 ~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lr 451 (755)
+..... ...+....+.+++
T Consensus 220 ---------------i~v~~~---~~~~~~i~q~~~~------------------------------------------- 238 (572)
T PRK04537 220 ---------------LVVETE---TITAARVRQRIYF------------------------------------------- 238 (572)
T ss_pred ---------------EEeccc---cccccceeEEEEe-------------------------------------------
Confidence 000000 0000000000000
Q ss_pred HHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHH
Q psy5647 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531 (755)
Q Consensus 452 k~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~ 531 (755)
.....|+..|..++. ...+.++|||++.....+.|.
T Consensus 239 -----------------------------------------~~~~~k~~~L~~ll~---~~~~~k~LVF~nt~~~ae~l~ 274 (572)
T PRK04537 239 -----------------------------------------PADEEKQTLLLGLLS---RSEGARTMVFVNTKAFVERVA 274 (572)
T ss_pred -----------------------------------------cCHHHHHHHHHHHHh---cccCCcEEEEeCCHHHHHHHH
Confidence 001123333333333 234679999999999999999
Q ss_pred HHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccC
Q psy5647 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611 (755)
Q Consensus 532 ~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~G 611 (755)
+.|...|+.+..++|+++..+|.++++.|+++.. -+|++|.+++.|||+..++.||+||.++++..|.|++||++|.|
T Consensus 275 ~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~--~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G 352 (572)
T PRK04537 275 RTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQL--EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLG 352 (572)
T ss_pred HHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCC--eEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCC
Confidence 9999999999999999999999999999997554 37899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeeC
Q psy5647 612 QKKPCFVYRFLST 624 (755)
Q Consensus 612 Q~k~V~Vyrlv~~ 624 (755)
..-.+. .|++.
T Consensus 353 ~~G~ai--~~~~~ 363 (572)
T PRK04537 353 EEGDAI--SFACE 363 (572)
T ss_pred CCceEE--EEecH
Confidence 875443 34443
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=3.9e-22 Score=222.50 Aligned_cols=318 Identities=19% Similarity=0.247 Sum_probs=205.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+.|+|.+++..++ .+...|+..++|+|||+.++..+...+.... ...++||++|. .|+.|+.+.
T Consensus 49 ~~~~~~Q~~ai~~i~---------~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~----~~~~~lil~Pt~~L~~Q~~~~ 115 (401)
T PTZ00424 49 EKPSAIQQRGIKPIL---------DGYDTIGQAQSGTGKTATFVIAALQLIDYDL----NACQALILAPTRELAQQIQKV 115 (401)
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHhcCCC----CCceEEEECCCHHHHHHHHHH
Confidence 368899999999874 3567899999999999987766655543321 12468999999 677788777
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+...... ........|+.... ....... ...+|+|+|++.+..... .+.-..+++||+||||++....
T Consensus 116 ~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~------~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~ 187 (401)
T PTZ00424 116 VLALGDYLKVRCHACVGGTVVR--DDINKLK------AGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGF 187 (401)
T ss_pred HHHHhhhcCceEEEEECCcCHH--HHHHHHc------CCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcch
Confidence 7776543 23333344443221 1111111 235799999998764432 2233468999999999985432
Q ss_pred -cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhcc-CccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE-TPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 -s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~-~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
......+..+. ..+.+++|||+-. ...++ ...|. .|...
T Consensus 188 ~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~------------------~~~~~~~~~~~------------------- 229 (401)
T PTZ00424 188 KGQIYDVFKKLPPDVQVALFSATMPN-EILEL------------------TTKFMRDPKRI------------------- 229 (401)
T ss_pred HHHHHHHHhhCCCCcEEEEEEecCCH-HHHHH------------------HHHHcCCCEEE-------------------
Confidence 33444555553 4568999999632 11111 01110 00000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
.+. ...+ .+.......+.+ ..
T Consensus 230 ---------~~~--~~~~--~~~~~~~~~~~~--~~-------------------------------------------- 250 (401)
T PTZ00424 230 ---------LVK--KDEL--TLEGIRQFYVAV--EK-------------------------------------------- 250 (401)
T ss_pred ---------EeC--CCCc--ccCCceEEEEec--Ch--------------------------------------------
Confidence 000 0000 000000000000 00
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
...+...+..++.. ....++|||++.....+.+...|..
T Consensus 251 --------------------------------------~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~ 289 (401)
T PTZ00424 251 --------------------------------------EEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE 289 (401)
T ss_pred --------------------------------------HHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH
Confidence 00111222222222 2356899999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.++.+..++|+++.++|..+++.|+++... +|++|.+.++|+|++.++.||+||++.++..+.|++||++|.|..-
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G-- 365 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKG-- 365 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCc--
Confidence 999999999999999999999999976544 7899999999999999999999999999999999999999998654
Q ss_pred EEEEEeeCC
Q psy5647 617 FVYRFLSTG 625 (755)
Q Consensus 617 ~Vyrlv~~g 625 (755)
.+|.|++..
T Consensus 366 ~~i~l~~~~ 374 (401)
T PTZ00424 366 VAINFVTPD 374 (401)
T ss_pred eEEEEEcHH
Confidence 345566554
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=6.5e-22 Score=229.39 Aligned_cols=312 Identities=16% Similarity=0.234 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.+.|+|.+++..+. .+..+|+..++|+|||++.+..+...+.... . ...+||+||+ .|..||.+++
T Consensus 28 ~ptpiQ~~ai~~ll---------~g~dvl~~ApTGsGKT~af~lpll~~l~~~~-~---~~~~LIL~PTreLa~Qv~~~l 94 (629)
T PRK11634 28 KPSPIQAECIPHLL---------NGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL-K---APQILVLAPTRELAVQVAEAM 94 (629)
T ss_pred CCCHHHHHHHHHHH---------cCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc-C---CCeEEEEeCcHHHHHHHHHHH
Confidence 67899999998874 3467899999999999987655444333221 1 1358999999 7889999999
Q ss_pred HHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
.+|... .+.++.++++...+.. +... ....+|+|+|.+.+..+.. .+.-..+.+||+||||.+-+..
T Consensus 95 ~~~~~~~~~i~v~~~~gG~~~~~q--~~~l------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf 166 (629)
T PRK11634 95 TDFSKHMRGVNVVALYGGQRYDVQ--LRAL------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGF 166 (629)
T ss_pred HHHHhhcCCceEEEEECCcCHHHH--HHHh------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhccc
Confidence 888643 4666677776543221 1111 1235799999998875542 2333467889999999875433
Q ss_pred -cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+. ....+++|||.-. .+.++ .+.|
T Consensus 167 ~~di~~Il~~lp~~~q~llfSAT~p~-~i~~i------------------~~~~-------------------------- 201 (629)
T PRK11634 167 IEDVETIMAQIPEGHQTALFSATMPE-AIRRI------------------TRRF-------------------------- 201 (629)
T ss_pred HHHHHHHHHhCCCCCeEEEEEccCCh-hHHHH------------------HHHH--------------------------
Confidence 23344455554 3456899999521 11110 0111
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
+..... +.+.-.. . .+|
T Consensus 202 --------------------l~~~~~--i~i~~~~----------------------~-------------------~~~ 218 (629)
T PRK11634 202 --------------------MKEPQE--VRIQSSV----------------------T-------------------TRP 218 (629)
T ss_pred --------------------cCCCeE--EEccCcc----------------------c-------------------cCC
Confidence 000000 0000000 0 000
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
.+ ...| .......|...|..+|.. ....++||||+.....+.+...|...
T Consensus 219 ~i-------------------~q~~--------~~v~~~~k~~~L~~~L~~---~~~~~~IVF~~tk~~a~~l~~~L~~~ 268 (629)
T PRK11634 219 DI-------------------SQSY--------WTVWGMRKNEALVRFLEA---EDFDAAIIFVRTKNATLEVAEALERN 268 (629)
T ss_pred ce-------------------EEEE--------EEechhhHHHHHHHHHHh---cCCCCEEEEeccHHHHHHHHHHHHhC
Confidence 00 0000 000012244444445443 23578999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
|+....++|.++..+|.+++++|.++... +|++|++++.|||++.++.||+||+|.++..|.|++||++|.|.+-.+.
T Consensus 269 g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 269 GYNSAALNGDMNQALREQTLERLKDGRLD--ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEE
Confidence 99999999999999999999999986554 7899999999999999999999999999999999999999999765443
Q ss_pred E
Q psy5647 618 V 618 (755)
Q Consensus 618 V 618 (755)
+
T Consensus 347 ~ 347 (629)
T PRK11634 347 L 347 (629)
T ss_pred E
Confidence 3
No 43
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=7.4e-22 Score=232.09 Aligned_cols=309 Identities=19% Similarity=0.226 Sum_probs=204.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.++|..++ .++.+|+...+|.|||+....-+. .. + ..+|||+|. +|+.++...
T Consensus 459 ~sFRp~Q~eaI~aiL---------~GrDVLVimPTGSGKSLcYQLPAL--~~-~-------GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 459 HSFRPNQREIINATM---------SGYDVFVLMPTGGGKSLTYQLPAL--IC-P-------GITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEcCCCccHHHHHHHHHH--Hc-C-------CcEEEEeCHHHHHHHHHHH
Confidence 579999999998763 457899999999999998755443 22 1 238999999 676655555
Q ss_pred HHHHhCCCceEEEecCCC-HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh---h---hhhh-cCCccEEEEeCCccc
Q psy5647 224 ITKWLGGRVAALPIDGGS-KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH---A---SVLH-KNEVGLVLCDEGHRL 295 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~---~---~~l~-~~~~~lvIiDEaH~l 295 (755)
+.. ..+....+.++. ..+....+...... ....+++++|.+.+... . ..+. ...+.+|||||||.+
T Consensus 520 L~~---~GI~Aa~L~s~~s~~eq~~ilr~l~s~---~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 520 LLQ---ANIPAASLSAGMEWAEQLEILQELSSE---YSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred HHh---CCCeEEEEECCCCHHHHHHHHHHHHhc---CCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 443 235555555543 33333333333221 13468999999987532 1 2222 234789999999998
Q ss_pred CCCc---cHHHHHH----HccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHH
Q psy5647 296 KNCE---SQTYQAL----MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAER 368 (755)
Q Consensus 296 Kn~~---s~~~~al----~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~ 368 (755)
-... -.-++.+ ..+.....++||||.-.....++...+...++-. |...|.
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v------fr~Sf~---------------- 651 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV------FRQSFN---------------- 651 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE------eecccC----------------
Confidence 5432 1122322 2345567899999986665555554443221110 000000
Q ss_pred HHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHH
Q psy5647 369 TKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSIT 448 (755)
Q Consensus 369 ~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 448 (755)
-|.. .+.+. . .. ..
T Consensus 652 -----------------------------RpNL-~y~Vv-~-k~--kk-------------------------------- 665 (1195)
T PLN03137 652 -----------------------------RPNL-WYSVV-P-KT--KK-------------------------------- 665 (1195)
T ss_pred -----------------------------ccce-EEEEe-c-cc--hh--------------------------------
Confidence 0100 01000 0 00 00
Q ss_pred HHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHH
Q psy5647 449 SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLD 528 (755)
Q Consensus 449 ~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld 528 (755)
.+..+..++... ..+.+.||||..+...+
T Consensus 666 -------------------------------------------------~le~L~~~I~~~--~~~esgIIYC~SRke~E 694 (1195)
T PLN03137 666 -------------------------------------------------CLEDIDKFIKEN--HFDECGIIYCLSRMDCE 694 (1195)
T ss_pred -------------------------------------------------HHHHHHHHHHhc--ccCCCceeEeCchhHHH
Confidence 000011111110 12467899999999999
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 529 ~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
.+...|...|+.+..++|+++.++|..+.+.|..+... +|++|.|.|.|||++..+.||+||+|.++..|.|++||++
T Consensus 695 ~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAG 772 (1195)
T PLN03137 695 KVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 772 (1195)
T ss_pred HHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc--EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccC
Confidence 99999999999999999999999999999999986554 7799999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEE
Q psy5647 609 RDGQKKPCFVY 619 (755)
Q Consensus 609 R~GQ~k~V~Vy 619 (755)
|.|+.-.|..|
T Consensus 773 RDG~~g~cILl 783 (1195)
T PLN03137 773 RDGQRSSCVLY 783 (1195)
T ss_pred CCCCCceEEEE
Confidence 99998776654
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.90 E-value=1.9e-21 Score=227.35 Aligned_cols=312 Identities=20% Similarity=0.271 Sum_probs=200.8
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...|.|+|.+++..+...... ....+.+|..++|+|||+.++..+...+..+ ..++|++|+ .|..||.
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~---~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-------~qvlilaPT~~LA~Q~~ 301 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKS---DVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-------YQVALMAPTEILAEQHY 301 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc---CCCccEEEECCCCCcHHHHHHHHHHHHHHcC-------CcEEEECCHHHHHHHHH
Confidence 4568999999999998764421 2234579999999999999887766666554 248999999 6669999
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+++.+|++. .+.+..+.|+............... ...+|+|.|+..+.... .-.+.++||+||+|++.- .
T Consensus 302 ~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~----g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 302 NSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS----GQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred HHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC----CCCCEEEecHHHHhccc---cccccceEEEechhhccH--H
Confidence 999999875 5677777776544333222222221 24589999999886432 224678999999999732 1
Q ss_pred HHHHHHHccc---cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGLK---AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 301 ~~~~al~~l~---~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
+......... ..+.+++||||+...+. +..+ +.+ ..
T Consensus 373 qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~---~~l----------~~------------------------ 411 (630)
T TIGR00643 373 QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY---GDL----------DT------------------------ 411 (630)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc---CCc----------ce------------------------
Confidence 2222222223 57899999999764322 1000 000 00
Q ss_pred HHHhHhHHHHhcchhHhhccCCCce--EEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhC
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKT--EQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~--e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~n 455 (755)
.....+|+.. .....+.-.. ...+|
T Consensus 412 ---------------~~i~~~p~~r~~i~~~~~~~~~-~~~~~------------------------------------- 438 (630)
T TIGR00643 412 ---------------SIIDELPPGRKPITTVLIKHDE-KDIVY------------------------------------- 438 (630)
T ss_pred ---------------eeeccCCCCCCceEEEEeCcch-HHHHH-------------------------------------
Confidence 0000122110 1111111000 01111
Q ss_pred ChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEech--------hHH
Q psy5647 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYT--------QTL 527 (755)
Q Consensus 456 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~--------~~l 527 (755)
..+...+ ..+.+++|||... ...
T Consensus 439 -----------------------------------------------~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a 469 (630)
T TIGR00643 439 -----------------------------------------------EFIEEEI--AKGRQAYVVYPLIEESEKLDLKAA 469 (630)
T ss_pred -----------------------------------------------HHHHHHH--HhCCcEEEEEccccccccchHHHH
Confidence 1111111 1255677776543 223
Q ss_pred HHHHHHHHh--cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHh
Q psy5647 528 DLFERLSKL--RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAM 604 (755)
Q Consensus 528 d~l~~~L~~--~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~ 604 (755)
..+.+.|.. .++.+..++|.++.++|.++++.|.++... +|++|.+.++|+|++.++.||++|++. +-+.+.|++
T Consensus 470 ~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~ 547 (630)
T TIGR00643 470 EALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD--ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLR 547 (630)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHh
Confidence 334444443 478899999999999999999999986554 789999999999999999999999985 667899999
Q ss_pred HhhhccCCCCcEEE
Q psy5647 605 ARVWRDGQKKPCFV 618 (755)
Q Consensus 605 gR~~R~GQ~k~V~V 618 (755)
||++|.|..-.|.+
T Consensus 548 GRvGR~g~~g~~il 561 (630)
T TIGR00643 548 GRVGRGDHQSYCLL 561 (630)
T ss_pred hhcccCCCCcEEEE
Confidence 99999987665553
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.89 E-value=4.1e-21 Score=226.03 Aligned_cols=310 Identities=17% Similarity=0.233 Sum_probs=201.9
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...|.++|.+++.-+...... ......+|.-++|+|||+.++..+...+..+ ..+||++|+ .|..|+.
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~---~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-------~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLAS---PKPMNRLLQGDVGSGKTVVAALAALAAIEAG-------YQAALMAPTEILAEQHY 327 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhc---cCCceEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEeccHHHHHHHH
Confidence 4557999999999988764421 2234689999999999999988776666544 248999999 6778999
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+.+.+|++. .+.+..+.|+............... ...+|+|.|+..+.... .-.+.++||+||+|++. .
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~----g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg---~ 397 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS----GEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFG---V 397 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC----CCCCEEEchHHHhcccc---hhcccceEEEechhhhh---H
Confidence 999999875 4677777777654332222221111 24689999998885432 22367899999999983 2
Q ss_pred HHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 301 ~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
.....+... .....+++||||+...+. +..+ +..
T Consensus 398 ~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~------g~~----------------------------------- 432 (681)
T PRK10917 398 EQRLALREKGENPHVLVMTATPIPRTLA----MTAY------GDL----------------------------------- 432 (681)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc------CCC-----------------------------------
Confidence 333334333 357789999999753321 0000 000
Q ss_pred HhHhHHHHhcchhHhhccCCCce--EEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 380 GIVNRCLIRRTSALLSKYLPVKT--EQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 380 ~~l~~~~lRRt~~~v~~~LP~k~--e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
.. .....+|+.. .....+... ...
T Consensus 433 ---~~--------s~i~~~p~~r~~i~~~~~~~~-~~~------------------------------------------ 458 (681)
T PRK10917 433 ---DV--------SVIDELPPGRKPITTVVIPDS-RRD------------------------------------------ 458 (681)
T ss_pred ---ce--------EEEecCCCCCCCcEEEEeCcc-cHH------------------------------------------
Confidence 00 0000122100 011111100 000
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechh--------HHHH
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQ--------TLDL 529 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~--------~ld~ 529 (755)
.++..+...+ ..+++++|||+... ....
T Consensus 459 ------------------------------------------~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~ 494 (681)
T PRK10917 459 ------------------------------------------EVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEE 494 (681)
T ss_pred ------------------------------------------HHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHH
Confidence 0111122222 23678888887432 2233
Q ss_pred HHHHHHhc--CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHhHh
Q psy5647 530 FERLSKLR--GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAMAR 606 (755)
Q Consensus 530 l~~~L~~~--g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~gR 606 (755)
+.+.|... ++++..++|+++.++|.+++++|.++... +|++|.+.+.|+|+++++.||++|++. ..+.+.|++||
T Consensus 495 ~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GR 572 (681)
T PRK10917 495 TYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID--ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGR 572 (681)
T ss_pred HHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhc
Confidence 44444443 57899999999999999999999976544 789999999999999999999999985 56888999999
Q ss_pred hhccCCCCcEE
Q psy5647 607 VWRDGQKKPCF 617 (755)
Q Consensus 607 ~~R~GQ~k~V~ 617 (755)
++|.|....|.
T Consensus 573 vGR~g~~g~~i 583 (681)
T PRK10917 573 VGRGAAQSYCV 583 (681)
T ss_pred ccCCCCceEEE
Confidence 99998765554
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.89 E-value=4.1e-21 Score=229.11 Aligned_cols=312 Identities=16% Similarity=0.238 Sum_probs=208.8
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...+.|.|..++..+..-... ......++.-++|+|||..++..+...+..+ ..++|++|+ .|..|..
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~---~~~~d~Ll~adTGsGKT~val~a~l~al~~g-------~qvlvLvPT~~LA~Q~~ 517 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMES---PRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-------KQVAVLVPTTLLAQQHF 517 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcc---cCcCCEEEECCCCccHHHHHHHHHHHHHHhC-------CeEEEEeCcHHHHHHHH
Confidence 4457899999999988764321 2335689999999999999887766555544 348999999 6668899
Q ss_pred HHHHHHhCC-CceEEEecCCCHH-HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKA-EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.|.++++. .+.+..+.+.... +....+..+.. ...+|+|.|+..+.... .-.+.++||+||+|++..
T Consensus 518 ~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-----g~~dIVIGTp~ll~~~v---~f~~L~llVIDEahrfgv-- 587 (926)
T TIGR00580 518 ETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-----GKIDILIGTHKLLQKDV---KFKDLGLLIIDEEQRFGV-- 587 (926)
T ss_pred HHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-----CCceEEEchHHHhhCCC---CcccCCEEEeecccccch--
Confidence 999998765 4555555555332 22222322211 23579999997664322 224578999999999732
Q ss_pred cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.....+..+. ....++|||||+...+.. ++....++.
T Consensus 588 -~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s--------------------------------------- 625 (926)
T TIGR00580 588 -KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS--------------------------------------- 625 (926)
T ss_pred -hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE---------------------------------------
Confidence 3344555553 467899999997643321 000000000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceE---EEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhC
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTE---QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e---~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~n 455 (755)
++ ..|+... ....+..++ .
T Consensus 626 -------~I---------~~~p~~R~~V~t~v~~~~~--~---------------------------------------- 647 (926)
T TIGR00580 626 -------II---------ATPPEDRLPVRTFVMEYDP--E---------------------------------------- 647 (926)
T ss_pred -------EE---------ecCCCCccceEEEEEecCH--H----------------------------------------
Confidence 00 0111100 000011000 0
Q ss_pred ChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHH
Q psy5647 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535 (755)
Q Consensus 456 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~ 535 (755)
.+...++..+. .+.+++||++.....+.+.+.|+
T Consensus 648 --------------------------------------------~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~ 681 (926)
T TIGR00580 648 --------------------------------------------LVREAIRRELL--RGGQVFYVHNRIESIEKLATQLR 681 (926)
T ss_pred --------------------------------------------HHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHH
Confidence 00011112222 36799999999999999999998
Q ss_pred hc--CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHhHhhhccCC
Q psy5647 536 LR--GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAMARVWRDGQ 612 (755)
Q Consensus 536 ~~--g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~gR~~R~GQ 612 (755)
.. ++++..++|.|+.++|.+++++|.++... +|+||.+.+.|||++.++.||+++++. ..+.+.|++||++|.|.
T Consensus 682 ~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~ 759 (926)
T TIGR00580 682 ELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK 759 (926)
T ss_pred HhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC
Confidence 75 78999999999999999999999986654 789999999999999999999999864 56688999999999886
Q ss_pred CCcEEEEEEeeC
Q psy5647 613 KKPCFVYRFLST 624 (755)
Q Consensus 613 ~k~V~Vyrlv~~ 624 (755)
+- ++|-|+..
T Consensus 760 ~g--~aill~~~ 769 (926)
T TIGR00580 760 KA--YAYLLYPH 769 (926)
T ss_pred Ce--EEEEEECC
Confidence 54 44555544
No 47
>KOG0331|consensus
Probab=99.88 E-value=7.4e-21 Score=208.56 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=222.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH--cCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR--QGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~--~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
.+.|-|..++-.+ ..++.+|...++|+|||+.-+.-+...+. ++....+....+||++|+ -|..|-..
T Consensus 113 ~PtpIQaq~wp~~---------l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~ 183 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA---------LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA 183 (519)
T ss_pred CCchhhhccccee---------ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH
Confidence 4557887776555 35788999999999999987764444443 343344444569999999 77788888
Q ss_pred HHHHHhCC-CceEEEecCCCHH-HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCC-
Q psy5647 223 EITKWLGG-RVAALPIDGGSKA-EIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKN- 297 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn- 297 (755)
++.++... .+....++|+... ...+.++ ...+|+|.|...+..+.+ .+.-.+..++|+|||.++-.
T Consensus 184 ~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---------~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 184 EAREFGKSLRLRSTCVYGGAPKGPQLRDLE---------RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDM 254 (519)
T ss_pred HHHHHcCCCCccEEEEeCCCCccHHHHHHh---------cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcc
Confidence 99988775 4556667776543 3333332 246899999999987653 34445788999999999843
Q ss_pred -CccHHHHHHHcc-cccc-EEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 298 -CESQTYQALMGL-KAKR-RVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 298 -~~s~~~~al~~l-~~~~-rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
...+.-+.+..+ ++.+ .++-|+|=- .+
T Consensus 255 GFe~qI~~Il~~i~~~~rQtlm~saTwp----~~---------------------------------------------- 284 (519)
T KOG0331|consen 255 GFEPQIRKILSQIPRPDRQTLMFSATWP----KE---------------------------------------------- 284 (519)
T ss_pred ccHHHHHHHHHhcCCCcccEEEEeeecc----HH----------------------------------------------
Confidence 346666667777 3333 566666610 00
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
...+-..|+ . .|.. ..+.... .+ .....++.+-.
T Consensus 285 ---v~~lA~~fl---------~-~~~~-i~ig~~~---~~---------------------------~a~~~i~qive-- 318 (519)
T KOG0331|consen 285 ---VRQLAEDFL---------N-NPIQ-INVGNKK---EL---------------------------KANHNIRQIVE-- 318 (519)
T ss_pred ---HHHHHHHHh---------c-CceE-EEecchh---hh---------------------------hhhcchhhhhh--
Confidence 000011111 0 1111 1111000 00 00000111111
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
......|...|..+|..+....+.|+||||++..+.+.|+..+
T Consensus 319 -------------------------------------~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l 361 (519)
T KOG0331|consen 319 -------------------------------------VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNL 361 (519)
T ss_pred -------------------------------------hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHH
Confidence 1124678888888998887667789999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
+..+++...|+|..++.+|..+++.|.+++.. +|++|++++.||++.+.+.||+||+|-|...|.+|+||.+|-|++-
T Consensus 362 ~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~--vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G 439 (519)
T KOG0331|consen 362 RRKGWPAVAIHGDKSQSERDWVLKGFREGKSP--VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKG 439 (519)
T ss_pred HhcCcceeeecccccHHHHHHHHHhcccCCcc--eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCc
Confidence 99999999999999999999999999986665 8999999999999999999999999999999999999999988775
Q ss_pred cE
Q psy5647 615 PC 616 (755)
Q Consensus 615 ~V 616 (755)
..
T Consensus 440 ~A 441 (519)
T KOG0331|consen 440 TA 441 (519)
T ss_pred eE
Confidence 43
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.88 E-value=1.9e-20 Score=228.06 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=203.9
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...+.|.|.+++.-+..-.. .......++..++|+|||.+++..+...+..+ ..+||+||+ .|..|..
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~---~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g-------~qvlvLvPT~eLA~Q~~ 666 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMC---QPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH-------KQVAVLVPTTLLAQQHY 666 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhh---cCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHH
Confidence 345789999999998766432 12346789999999999998875554444333 358999999 5568888
Q ss_pred HHHHHHhCC-CceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 222 NEITKWLGG-RVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.|.+++.. .+.+..+.++ +..+....+.... . ...+|+|.|++.+.... .-.++++||+||+|++..
T Consensus 667 ~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~-~----g~~dIVVgTp~lL~~~v---~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 667 DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA-E----GKIDILIGTHKLLQSDV---KWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH-h----CCCCEEEECHHHHhCCC---CHhhCCEEEEechhhcch--
Confidence 889887654 3444445444 3333222233221 1 23589999998775432 224689999999999833
Q ss_pred cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.....+..+ .....+++||||+...+.-. +..+.++.
T Consensus 737 -~~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~--------------------------------------- 774 (1147)
T PRK10689 737 -RHKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLS--------------------------------------- 774 (1147)
T ss_pred -hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcE---------------------------------------
Confidence 233445555 35678999999987543210 00000000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
++. +.. ...+|.+.. .......
T Consensus 775 -------~I~-~~p--~~r~~v~~~---~~~~~~~--------------------------------------------- 796 (1147)
T PRK10689 775 -------IIA-TPP--ARRLAVKTF---VREYDSL--------------------------------------------- 796 (1147)
T ss_pred -------EEe-cCC--CCCCCceEE---EEecCcH---------------------------------------------
Confidence 000 000 000111100 0000000
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR- 537 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~- 537 (755)
.....++..+. .+.+++||++....++.+.+.|...
T Consensus 797 -----------------------------------------~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 797 -----------------------------------------VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred -----------------------------------------HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 00111222222 3578999999999999999988877
Q ss_pred -CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC-CCCCcHHHHhHhhhccCCCCc
Q psy5647 538 -GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 538 -g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~-WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
++++..++|+|+.++|.+++.+|.++... +|++|.+.+.|||++.+++||+.+++ ++.+.+.|++||++|.|.+-.
T Consensus 834 p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~ 911 (1147)
T PRK10689 834 PEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 (1147)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceE
Confidence 78999999999999999999999986654 78999999999999999999988775 677889999999999987654
Q ss_pred EE
Q psy5647 616 CF 617 (755)
Q Consensus 616 V~ 617 (755)
|+
T Consensus 912 a~ 913 (1147)
T PRK10689 912 AW 913 (1147)
T ss_pred EE
Confidence 33
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=2.4e-20 Score=220.42 Aligned_cols=334 Identities=15% Similarity=0.124 Sum_probs=214.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|||.+++..+. .+.++|+.-.+|+|||+....-+...+...+ ..++||++|+ .|..|-.+++
T Consensus 36 ~p~~~Q~~ai~~il---------~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-----~~~aL~l~PtraLa~q~~~~l 101 (742)
T TIGR03817 36 RPWQHQARAAELAH---------AGRHVVVATGTASGKSLAYQLPVLSALADDP-----RATALYLAPTKALAADQLRAV 101 (742)
T ss_pred cCCHHHHHHHHHHH---------CCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-----CcEEEEEcChHHHHHHHHHHH
Confidence 68999999999873 4678999999999999998776655554332 1358999999 7778888888
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh------hhcCCccEEEEeCCcccCCC
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV------LHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~------l~~~~~~lvIiDEaH~lKn~ 298 (755)
.++....+.+..++|+...+....+. ...+|+|+|.+++....-. ..-.+.++||+||||.+.+.
T Consensus 102 ~~l~~~~i~v~~~~Gdt~~~~r~~i~---------~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 102 RELTLRGVRPATYDGDTPTEERRWAR---------EHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHhccCCeEEEEEeCCCCHHHHHHHh---------cCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc
Confidence 88864346666677765544332222 1247999999998632100 00135689999999998652
Q ss_pred -ccHHHHHHHcc--------ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHH
Q psy5647 299 -ESQTYQALMGL--------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369 (755)
Q Consensus 299 -~s~~~~al~~l--------~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~ 369 (755)
.+.....+..+ .....+++|||. ++..++.. .+ +..|+..
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l--------------~g~~~~~------------ 221 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RL--------------IGAPVVA------------ 221 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HH--------------cCCCeEE------------
Confidence 23333333333 124679999995 23333211 11 0011000
Q ss_pred HHHHHHHHHHHhHhHHHHhcchhHhh-ccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHH
Q psy5647 370 KANERLEQLIGIVNRCLIRRTSALLS-KYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSIT 448 (755)
Q Consensus 370 ~~~~~~~~L~~~l~~~~lRRt~~~v~-~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 448 (755)
+. ..-|.....+......... . ..... .
T Consensus 222 ------------------------i~~~~~~~~~~~~~~~~p~~~~------~----------~~~~~--~--------- 250 (742)
T TIGR03817 222 ------------------------VTEDGSPRGARTVALWEPPLTE------L----------TGENG--A--------- 250 (742)
T ss_pred ------------------------ECCCCCCcCceEEEEecCCccc------c----------ccccc--c---------
Confidence 00 0011111111111111000 0 00000 0
Q ss_pred HHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHH
Q psy5647 449 SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLD 528 (755)
Q Consensus 449 ~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld 528 (755)
... ......+...+..++. .+.++|||++.+...+
T Consensus 251 --------------------------------------~~r--~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae 285 (742)
T TIGR03817 251 --------------------------------------PVR--RSASAEAADLLADLVA-----EGARTLTFVRSRRGAE 285 (742)
T ss_pred --------------------------------------ccc--cchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHH
Confidence 000 0001223334444443 2679999999999999
Q ss_pred HHHHHHHhc--------CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcH
Q psy5647 529 LFERLSKLR--------GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 (755)
Q Consensus 529 ~l~~~L~~~--------g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~ 600 (755)
.+...|+.. +.++..++|+++.++|.++.++|.++.-. +|++|++++.|||+.+.+.||+||.|-+...+
T Consensus 286 ~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~--vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y 363 (742)
T TIGR03817 286 LVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL--GVATTNALELGVDISGLDAVVIAGFPGTRASL 363 (742)
T ss_pred HHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce--EEEECchHhccCCcccccEEEEeCCCCCHHHH
Confidence 998887654 56788999999999999999999975543 78999999999999999999999999999999
Q ss_pred HHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHH
Q psy5647 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633 (755)
Q Consensus 601 ~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~ 633 (755)
.|++||++|.|+.-. ++-++..+..|...+.
T Consensus 364 ~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 364 WQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred HHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999997643 3445555566765444
No 50
>KOG0330|consensus
Probab=99.87 E-value=8.7e-21 Score=195.51 Aligned_cols=327 Identities=18% Similarity=0.247 Sum_probs=221.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E 223 (755)
..+-+-|.+++-.+ .+++-||-+.|+|+|||..-+.-+...+-+.|. .-.+||++|+-=+ .|-...
T Consensus 82 ~~PT~IQ~~aiP~~---------L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~----~~~~lVLtPtRELA~QI~e~ 148 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVA---------LGGRDVIGLAETGSGKTGAFALPILQRLLQEPK----LFFALVLTPTRELAQQIAEQ 148 (476)
T ss_pred CCCchhhhhhcchh---------hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC----CceEEEecCcHHHHHHHHHH
Confidence 45668899999877 457889999999999999866654443333332 2458999999555 555556
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh---hcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL---HKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l---~~~~~~lvIiDEaH~lKn~~ 299 (755)
|.....+ .+.+..+-||...... ...- . ...+|+|.|...+..+...- .-....++|+|||.++-|.+
T Consensus 149 fe~Lg~~iglr~~~lvGG~~m~~q-~~~L-----~--kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~d 220 (476)
T KOG0330|consen 149 FEALGSGIGLRVAVLVGGMDMMLQ-ANQL-----S--KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMD 220 (476)
T ss_pred HHHhccccCeEEEEEecCchHHHH-HHHh-----h--cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhh
Confidence 6666443 5666667676543221 1111 1 23579999999998876532 22345679999999998865
Q ss_pred --cHHHHHHHccccccE-EEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 --SQTYQALMGLKAKRR-VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 --s~~~~al~~l~~~~r-llLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
-...+.+..++..++ ++.|||--. +...|
T Consensus 221 F~~~ld~ILk~ip~erqt~LfsATMt~-kv~kL----------------------------------------------- 252 (476)
T KOG0330|consen 221 FEEELDYILKVIPRERQTFLFSATMTK-KVRKL----------------------------------------------- 252 (476)
T ss_pred hHHHHHHHHHhcCccceEEEEEeecch-hhHHH-----------------------------------------------
Confidence 456666777765444 677888422 21111
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
. ...++ -|.+.. -+ ..|+.+ ..|+|-
T Consensus 253 --~----rasl~---------~p~~v~------~s----~ky~tv--------------------------~~lkQ~--- 278 (476)
T KOG0330|consen 253 --Q----RASLD---------NPVKVA------VS----SKYQTV--------------------------DHLKQT--- 278 (476)
T ss_pred --H----hhccC---------CCeEEe------cc----chhcch--------------------------HHhhhh---
Confidence 1 00000 111111 01 111111 000000
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
+++ +| ..-|-..|..+|.+. .+..++|||+...+.+.+.-+|+.
T Consensus 279 -ylf-----------------v~---------------~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 279 -YLF-----------------VP---------------GKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred -eEe-----------------cc---------------ccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHh
Confidence 000 00 011233455555543 468999999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.|+....++|.|+...|...++.|+++... +|++|++++.||+.+.++.||+||.|-+-..|+.|.||+.|.| +.-
T Consensus 323 lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG 398 (476)
T KOG0330|consen 323 LGFQAIPLHGQMSQSKRLGALNKFKAGARS--ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSG 398 (476)
T ss_pred cCcceecccchhhHHHHHHHHHHHhccCCc--EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCc
Confidence 999999999999999999999999986655 8899999999999999999999999999999999999999999 555
Q ss_pred EEEEEeeCCCHHHHHHHHHH
Q psy5647 617 FVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~ 636 (755)
.+..|++. .|-..+++.+
T Consensus 399 ~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330|consen 399 KAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred ceEEEEeh--hhhHHHHHHH
Confidence 67789998 5555555554
No 51
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=6.4e-20 Score=221.04 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=91.0
Q ss_pred CCEEEEEEechhHHHHHHHHHHhc------CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLR------GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANR 587 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~------g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~ 587 (755)
+.++||||+.....+.+...|... +..+..++|+++.++|..+.+.|+++... +|++|.+++.|||+...+.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~--vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK--VVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe--EEEECChHHhcCCCCCCcE
Confidence 578999999999999888888763 46788999999999999999999986553 7889999999999999999
Q ss_pred EEEeCCCCCCCcHHHHhHhhhcc-CCCCcEEEEE
Q psy5647 588 LVMFDPDWNPANDDQAMARVWRD-GQKKPCFVYR 620 (755)
Q Consensus 588 vI~~D~~WNp~~~~Qa~gR~~R~-GQ~k~V~Vyr 620 (755)
||++++|.+.+.+.|++||++|. |....-.++-
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999986 4444455543
No 52
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1e-18 Score=199.01 Aligned_cols=333 Identities=17% Similarity=0.255 Sum_probs=223.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
..-|.|..++-.++ .++..|....+|+|||+.-+.-+...+...... ...++||++|+ -|..|-.+++
T Consensus 51 ~pt~IQ~~~IP~~l---------~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~--~~~~aLil~PTRELA~Qi~~~~ 119 (513)
T COG0513 51 EPTPIQLAAIPLIL---------AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER--KYVSALILAPTRELAVQIAEEL 119 (513)
T ss_pred CCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHHhccccc--CCCceEEECCCHHHHHHHHHHH
Confidence 34589999998774 457899999999999988776655555431110 01118999999 6667888888
Q ss_pred HHHhCC--CceEEEecCCCHHHH-HHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEI-DNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
.++... .+.+..+.||..... ...+.. ..+|+|.|...+..+.. .+......++|+|||.++-+..
T Consensus 120 ~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---------~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 120 RKLGKNLGGLRVAVVYGGVSIRKQIEALKR---------GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHhhcCCccEEEEECCCCHHHHHHHHhc---------CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC
Confidence 877664 466777777754322 222221 26899999999886553 3445578899999999997763
Q ss_pred --cHHHHHHHcccc-ccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 --SQTYQALMGLKA-KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 --s~~~~al~~l~~-~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
..+...+..+.. ...++.|||--. .+.++ .+.|..
T Consensus 191 f~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l------------------~~~~l~----------------------- 228 (513)
T COG0513 191 FIDDIEKILKALPPDRQTLLFSATMPD-DIREL------------------ARRYLN----------------------- 228 (513)
T ss_pred CHHHHHHHHHhCCcccEEEEEecCCCH-HHHHH------------------HHHHcc-----------------------
Confidence 344445555544 566888999522 11111 001000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
++..+...........+.....++.|+
T Consensus 229 ------~p~~i~v~~~~~~~~~~~i~q~~~~v~----------------------------------------------- 255 (513)
T COG0513 229 ------DPVEIEVSVEKLERTLKKIKQFYLEVE----------------------------------------------- 255 (513)
T ss_pred ------CCcEEEEccccccccccCceEEEEEeC-----------------------------------------------
Confidence 000000000000000000000000000
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
....|+.+|..++.... ..++|||++.....+.+...|..
T Consensus 256 -------------------------------------~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~ 295 (513)
T COG0513 256 -------------------------------------SEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRK 295 (513)
T ss_pred -------------------------------------CHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHH
Confidence 01157777777776543 44899999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.|+++..|+|++++.+|.+.++.|+++... +|++|++++.||++.+.++||+||+|.++..|.+|+||.+|.|.+-
T Consensus 296 ~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~--vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G-- 371 (513)
T COG0513 296 RGFKVAALHGDLPQEERDRALEKFKDGELR--VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG-- 371 (513)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--
Confidence 999999999999999999999999975554 7899999999999999999999999999999999999999999443
Q ss_pred EEEEEeeCCCHHHHHHHHHHHH
Q psy5647 617 FVYRFLSTGSIEEKMMQRQAHK 638 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~~K 638 (755)
..+.|++. .-|...+.+.+..
T Consensus 372 ~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 372 VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred eEEEEeCc-HHHHHHHHHHHHH
Confidence 44556666 2244544444443
No 53
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=4.8e-19 Score=211.37 Aligned_cols=321 Identities=17% Similarity=0.169 Sum_probs=195.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|+|.+++...+ ..+.+++++.++|+|||+.+...+...+..+ +++|+|+|. +|+.|+.++
T Consensus 22 ~~l~p~Q~~ai~~~~--------~~g~nvlv~APTGSGKTlia~lail~~l~~~-------~kal~i~P~raLa~q~~~~ 86 (737)
T PRK02362 22 EELYPPQAEAVEAGL--------LDGKNLLAAIPTASGKTLIAELAMLKAIARG-------GKALYIVPLRALASEKFEE 86 (737)
T ss_pred CcCCHHHHHHHHHHH--------hCCCcEEEECCCcchHHHHHHHHHHHHHhcC-------CcEEEEeChHHHHHHHHHH
Confidence 369999999997643 3467899999999999999876655544322 358999999 888999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCcc-
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCES- 300 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~s- 300 (755)
|.++.+..+.+..+.|+..... . + ....+|+|+|++.+...... ..-..+++||+||+|.+.+...
T Consensus 87 ~~~~~~~g~~v~~~tGd~~~~~-~----~------l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg 155 (737)
T PRK02362 87 FERFEELGVRVGISTGDYDSRD-E----W------LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRG 155 (737)
T ss_pred HHHhhcCCCEEEEEeCCcCccc-c----c------cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcch
Confidence 9987543455555555432211 0 1 12358999999988554321 1113579999999999975331
Q ss_pred HHHHH-HHcc----ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHH
Q psy5647 301 QTYQA-LMGL----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375 (755)
Q Consensus 301 ~~~~a-l~~l----~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~ 375 (755)
..... +..+ ...+.++||||.- +..++.. |++...+. ..|
T Consensus 156 ~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~---wl~~~~~~------~~~------------------------ 200 (737)
T PRK02362 156 PTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD---WLDAELVD------SEW------------------------ 200 (737)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH---HhCCCccc------CCC------------------------
Confidence 22221 2222 3457899999973 4455443 22221110 000
Q ss_pred HHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhC
Q psy5647 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455 (755)
Q Consensus 376 ~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~n 455 (755)
-|......+... .. ++ + .... . .
T Consensus 201 ----------------------rpv~l~~~v~~~-~~----~~--~-----------~~~~--~---~------------ 223 (737)
T PRK02362 201 ----------------------RPIDLREGVFYG-GA----IH--F-----------DDSQ--R---E------------ 223 (737)
T ss_pred ----------------------CCCCCeeeEecC-Ce----ec--c-----------cccc--c---c------------
Confidence 011111111000 00 00 0 0000 0 0
Q ss_pred ChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHH
Q psy5647 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535 (755)
Q Consensus 456 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~ 535 (755)
++ ...+...+..++..+. .+.++|||++.+.....+...|.
T Consensus 224 ----------------------~~---------------~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~ 264 (737)
T PRK02362 224 ----------------------VE---------------VPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAA 264 (737)
T ss_pred ----------------------CC---------------CccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHH
Confidence 00 0000001111222221 36789999998877665554443
Q ss_pred hc------------------------------------CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccc
Q psy5647 536 LR------------------------------------GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCG 579 (755)
Q Consensus 536 ~~------------------------------------g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~G 579 (755)
.. ...+..++|+++..+|..+.+.|+++.- -+|++|.+.+.|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i--~VLvaT~tla~G 342 (737)
T PRK02362 265 SALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLI--KVISSTPTLAAG 342 (737)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCC--eEEEechhhhhh
Confidence 21 1357788999999999999999997554 378999999999
Q ss_pred cccCCCCEEEE----eC-----CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeC
Q psy5647 580 LNLIGANRLVM----FD-----PDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624 (755)
Q Consensus 580 LNL~~a~~vI~----~D-----~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~ 624 (755)
+|+++.+.||. || .+.++..+.|++||++|.|....-.++-+...
T Consensus 343 vnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 343 LNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred cCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 99997766664 76 46788899999999999998755445444443
No 54
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=5.4e-19 Score=194.20 Aligned_cols=130 Identities=20% Similarity=0.289 Sum_probs=99.2
Q ss_pred HHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCC--cEEEEcCCCCHHHHHHH----HHHHccCCCceEEEeecC
Q psy5647 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGY--KYVRLDGSMTIKKRAKV----VETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 501 ~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~--~~~~ldG~~~~~~R~~~----v~~Fn~~~~~~v~LlSt~ 574 (755)
.+..++..+. .+.++|||++.....+.+...|+..+. .+..++|.++..+|.+. ++.|.++.. .+|++|.
T Consensus 211 ~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~--~ilvaT~ 286 (358)
T TIGR01587 211 SLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEK--FVIVATQ 286 (358)
T ss_pred HHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCC--eEEEECc
Confidence 3444444332 368999999999999999999988876 48999999999999764 888886443 4789999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC----cEEEEEEeeCC---CHHHHHHHHHHH
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK----PCFVYRFLSTG---SIEEKMMQRQAH 637 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k----~V~Vyrlv~~g---TiEEkI~~r~~~ 637 (755)
+.+.|+|+. ++.||.++.+ +..+.|++||++|.|.+. .|+||.....+ ..+.+++++-..
T Consensus 287 ~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~ 353 (358)
T TIGR01587 287 VIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQ 353 (358)
T ss_pred chhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHH
Confidence 999999995 8888888765 789999999999999764 46666555444 345555555443
No 55
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=1.5e-19 Score=203.40 Aligned_cols=353 Identities=15% Similarity=0.142 Sum_probs=220.3
Q ss_pred eCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cch
Q psy5647 139 VDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLV 217 (755)
Q Consensus 139 v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll 217 (755)
.+......+|+||..+|+.+.+.+. .+...++|++.+|+|||.+||++++.|++.+ .++++|+++-. +|+
T Consensus 158 ~~~~s~i~~RyyQ~~AI~rv~Eaf~----~g~~raLlvMATGTGKTrTAiaii~rL~r~~-----~~KRVLFLaDR~~Lv 228 (875)
T COG4096 158 IDIDSAIGPRYYQIIAIRRVIEAFS----KGQNRALLVMATGTGKTRTAIAIIDRLIKSG-----WVKRVLFLADRNALV 228 (875)
T ss_pred CcccccccchHHHHHHHHHHHHHHh----cCCceEEEEEecCCCcceeHHHHHHHHHhcc-----hhheeeEEechHHHH
Confidence 4444677899999999999999886 5667799999999999999999999999887 46889999988 788
Q ss_pred HhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh-------hhhcCCccEEEEe
Q psy5647 218 KNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS-------VLHKNEVGLVLCD 290 (755)
Q Consensus 218 ~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~-------~l~~~~~~lvIiD 290 (755)
.|=..+|..++|..-....+.+... .....|.++||.++..... .+....||+||+|
T Consensus 229 ~QA~~af~~~~P~~~~~n~i~~~~~----------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvID 292 (875)
T COG4096 229 DQAYGAFEDFLPFGTKMNKIEDKKG----------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVID 292 (875)
T ss_pred HHHHHHHHHhCCCccceeeeecccC----------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEec
Confidence 8888899999997433333322110 1134799999999975432 2333458999999
Q ss_pred CCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHH
Q psy5647 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTK 370 (755)
Q Consensus 291 EaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~ 370 (755)
||||- .-+.++++...-...+++|||||-..--.. ++.-|. +.|+.......+
T Consensus 293 EaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~--------------T~~~F~---g~Pt~~YsleeA------- 345 (875)
T COG4096 293 EAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRS--------------TYGFFN---GEPTYAYSLEEA------- 345 (875)
T ss_pred hhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccc--------------cccccC---CCcceeecHHHH-------
Confidence 99984 334455666666778888899996521100 111111 344433221110
Q ss_pred HHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCC-------HH--HHHHHHHHHhhHHHHHHHcCCCcccccc
Q psy5647 371 ANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT-------DL--QKELYTNLIKSDAVRRTMKGGENTKLGM 441 (755)
Q Consensus 371 ~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls-------~~--q~~lY~~~~~~~~~~~~~~~~~~~~~~~ 441 (755)
+. ..+|-+....-+..+.. +. +.+++...+
T Consensus 346 -----------V~-----------DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i------------------- 384 (875)
T COG4096 346 -----------VE-----------DGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI------------------- 384 (875)
T ss_pred -----------hh-----------ccccCCCCceEEeeeccccCcCcCccchhhhhhcccc-------------------
Confidence 00 11122222222222111 00 111110000
Q ss_pred cHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHH-Hhc--cC--CCE
Q psy5647 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAV-IKM--TT--DDK 516 (755)
Q Consensus 442 ~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~-~~~--~~--~~K 516 (755)
+ ... ..|... +-.........+- .+...+.. +.. .+ -.|
T Consensus 385 -------------~----------~dd-----------~~~~~~-d~dr~~v~~~~~~-~V~r~~~~~l~~~~~g~~~~K 428 (875)
T COG4096 385 -------------D----------EDD-----------QNFEAR-DFDRTLVIPFRTE-TVARELTEYLKRGATGDEIGK 428 (875)
T ss_pred -------------C----------ccc-----------cccccc-ccchhccccchHH-HHHHHHHHHhccccCCCccCc
Confidence 0 000 000000 0000011111111 12222222 221 22 359
Q ss_pred EEEEEechhHHHHHHHHHHhc----C-CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEe
Q psy5647 517 IVLVSNYTQTLDLFERLSKLR----G-YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMF 591 (755)
Q Consensus 517 vlIFs~~~~~ld~l~~~L~~~----g-~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~ 591 (755)
.||||.....++.|...|... + -=+..|+|... +=+..|+.|-..+..-.+.+|++.+.+|+|.+.+..+||+
T Consensus 429 TIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~ 506 (875)
T COG4096 429 TIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD 506 (875)
T ss_pred eEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh
Confidence 999999999999999888764 2 23567888754 5566888887733333567999999999999999999999
Q ss_pred CCCCCCCcHHHHhHhhhcc-------CCCCc-EEEEEEe
Q psy5647 592 DPDWNPANDDQAMARVWRD-------GQKKP-CFVYRFL 622 (755)
Q Consensus 592 D~~WNp~~~~Qa~gR~~R~-------GQ~k~-V~Vyrlv 622 (755)
-.--+-..+.|.+||.-|. ||.|. ..|+.++
T Consensus 507 r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 507 RKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred hhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999999999996 35444 5566665
No 56
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=8.1e-18 Score=199.37 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=100.1
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|+|.+++..+ ..+.++|++.++|+|||+++...+...+..+ .++++|+|. +|..++.+++
T Consensus 22 ~l~~~Q~~ai~~l---------~~~~nvlv~apTGSGKTl~a~lail~~l~~~-------~k~v~i~P~raLa~q~~~~~ 85 (674)
T PRK01172 22 ELYDHQRMAIEQL---------RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-------LKSIYIVPLRSLAMEKYEEL 85 (674)
T ss_pred CCCHHHHHHHHHH---------hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-------CcEEEEechHHHHHHHHHHH
Confidence 5899999999875 2456899999999999999887766655443 357999999 7889999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-cH
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE-SQ 301 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~-s~ 301 (755)
.++......+....|+..... . +. ...+|+|+|++.+...... ..-.++++||+||+|.+.+.. ..
T Consensus 86 ~~l~~~g~~v~~~~G~~~~~~-~----~~------~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~ 154 (674)
T PRK01172 86 SRLRSLGMRVKISIGDYDDPP-D----FI------KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGP 154 (674)
T ss_pred HHHhhcCCeEEEEeCCCCCCh-h----hh------ccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccH
Confidence 987543344444444322111 1 11 1258999999987543321 112357899999999996532 12
Q ss_pred HHHHH----Hcc-ccccEEEeecCC
Q psy5647 302 TYQAL----MGL-KAKRRVLLSGTP 321 (755)
Q Consensus 302 ~~~al----~~l-~~~~rllLTGTP 321 (755)
....+ ..+ ...+.++||||+
T Consensus 155 ~le~ll~~~~~~~~~~riI~lSATl 179 (674)
T PRK01172 155 TLETVLSSARYVNPDARILALSATV 179 (674)
T ss_pred HHHHHHHHHHhcCcCCcEEEEeCcc
Confidence 22222 222 345679999997
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.81 E-value=1.5e-17 Score=197.99 Aligned_cols=159 Identities=23% Similarity=0.227 Sum_probs=106.6
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHH-HHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLM-WTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall-~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
..|+|+|.+++.-.+ ..+.++|++.++|+|||+.+...+ ..+...+ .++|+|+|. .|+.++.+
T Consensus 22 ~~l~~~Q~~ai~~~~--------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~-------~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 22 EELYPPQAEALKSGV--------LEGKNLVLAIPTASGKTLVAEIVMVNKLLREG-------GKAVYLVPLKALAEEKYR 86 (720)
T ss_pred CCCCHHHHHHHHHHH--------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC-------CeEEEEeChHHHHHHHHH
Confidence 478999999997422 346789999999999999995444 4444322 468999999 78899999
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCC--
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNC-- 298 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~-- 298 (755)
+|.+|....+.+..+.|+..... .+. ...+|+|+|++.+...... ..-.++++||+||+|.+...
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~~-----~~~------~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDSTD-----EWL------GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCch-----hhh------ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 99887544456666666543221 111 2358999999987654321 01135789999999998643
Q ss_pred ccHHHHHHHcc-ccccEEEeecCCCcCCHHHHHH
Q psy5647 299 ESQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFS 331 (755)
Q Consensus 299 ~s~~~~al~~l-~~~~rllLTGTPiqN~l~El~s 331 (755)
.......+..+ ...+.++||||.- +..++..
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH
Confidence 23333344444 4467899999973 3555543
No 58
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.80 E-value=2.7e-17 Score=192.94 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=110.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhccc-ccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVR-IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~-~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
....|+||.+||+.+.+.+.... ..+.+++++.+.+|+|||++++.++..++.... ..++|||||. .|..||.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~-----~~~vl~lvdR~~L~~Q~~ 310 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLK-----NPKVFFVVDRRELDYQLM 310 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcC-----CCeEEEEECcHHHHHHHH
Confidence 34589999999999988874211 123568999999999999999999988875332 3579999999 7889999
Q ss_pred HHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh-hhhcC---C-ccEEEEeCCcccC
Q psy5647 222 NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS-VLHKN---E-VGLVLCDEGHRLK 296 (755)
Q Consensus 222 ~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~-~l~~~---~-~~lvIiDEaH~lK 296 (755)
++|.++.+.... ..++..... ..... ....|+|+|+++|..... .+... . ..+||+|||||..
T Consensus 311 ~~f~~~~~~~~~----~~~s~~~L~----~~l~~----~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~ 378 (667)
T TIGR00348 311 KEFQSLQKDCAE----RIESIAELK----RLLEK----DDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQ 378 (667)
T ss_pred HHHHhhCCCCCc----ccCCHHHHH----HHHhC----CCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcccc
Confidence 999998753111 112222222 22211 235799999999975322 12211 1 2389999999863
Q ss_pred CCccHHHHHH-HccccccEEEeecCCCcC
Q psy5647 297 NCESQTYQAL-MGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 297 n~~s~~~~al-~~l~~~~rllLTGTPiqN 324 (755)
. ......+ ..++..++++|||||+..
T Consensus 379 ~--~~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 379 Y--GELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred c--hHHHHHHHhhCCCCcEEEEeCCCccc
Confidence 2 1233344 356778999999999864
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.79 E-value=1.9e-17 Score=192.67 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=85.1
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHH-----HHHHHHcc----CC-----CceEEEeecCCccc
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRA-----KVVETFNK----TS-----NEFIFMLSSKAGGC 578 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~-----~~v~~Fn~----~~-----~~~v~LlSt~agg~ 578 (755)
.+.++|||++.....+.+.+.|+..++ ..++|.++..+|. +++++|.+ +. ....+|++|.+.+.
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 467999999999999999999998887 8999999999999 78899976 22 12367899999999
Q ss_pred ccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 579 GLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 579 GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|||+.. +.||.++.++ ..++||+||++|.|.....
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 999985 8999877764 7999999999999986444
No 60
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=5.9e-17 Score=181.26 Aligned_cols=312 Identities=19% Similarity=0.232 Sum_probs=216.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
...||=|.++|..+. .+..+|.-..+|.||++..-.-. ++..| .+|||.|. +|+....+.
T Consensus 16 ~~FR~gQ~evI~~~l---------~g~d~lvvmPTGgGKSlCyQiPA--ll~~G--------~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 16 ASFRPGQQEIIDALL---------SGKDTLVVMPTGGGKSLCYQIPA--LLLEG--------LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred cccCCCHHHHHHHHH---------cCCcEEEEccCCCCcchHhhhHH--HhcCC--------CEEEECchHHHHHHHHHH
Confidence 367899999999874 45789999999999998543322 33333 38999999 888888888
Q ss_pred HHHHhCCCceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh--hhhhhcCCccEEEEeCCcccCCC--
Q psy5647 224 ITKWLGGRVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH--ASVLHKNEVGLVLCDEGHRLKNC-- 298 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~--~~~l~~~~~~lvIiDEaH~lKn~-- 298 (755)
+..- .+.+..+++. +.++....+..... ...+++.++.|.+... .+.+......+++|||||.+-..
T Consensus 77 l~~~---Gi~A~~lnS~l~~~e~~~v~~~l~~-----g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 77 LEAA---GIRAAYLNSTLSREERQQVLNQLKS-----GQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHc---CceeehhhcccCHHHHHHHHHHHhc-----CceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCC
Confidence 8764 2555555555 44444444443322 2357999999999753 46677889999999999987543
Q ss_pred -----ccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 299 -----ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 299 -----~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
..........+...-+++||||--.--..|+-..+..-.+.. |...|..|
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~------~~~sfdRp------------------- 203 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANI------FRGSFDRP------------------- 203 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce------EEecCCCc-------------------
Confidence 344555555566678999998864444444444443322211 11111100
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
T Consensus 204 -------------------------------------------------------------------------------- 203 (590)
T COG0514 204 -------------------------------------------------------------------------------- 203 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
.+.+.- ....+++.+.. .+.......+...||||.++...+.+.+.
T Consensus 204 ----Ni~~~v----------------------------~~~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~ 249 (590)
T COG0514 204 ----NLALKV----------------------------VEKGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEW 249 (590)
T ss_pred ----hhhhhh----------------------------hhcccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHH
Confidence 000000 00000011111 11111123456689999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
|...|++...++|+++.++|..+-++|+.++.. ++++|.|.|-|||=+....||+||+|-+...|.|-+||++|+|..
T Consensus 250 L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 250 LRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 999999999999999999999999999976665 789999999999999999999999999999999999999999987
Q ss_pred CcEEEEEEeeCCC
Q psy5647 614 KPCFVYRFLSTGS 626 (755)
Q Consensus 614 k~V~Vyrlv~~gT 626 (755)
..+.. |...+.
T Consensus 328 a~ail--l~~~~D 338 (590)
T COG0514 328 AEAIL--LYSPED 338 (590)
T ss_pred ceEEE--eecccc
Confidence 76654 455444
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.77 E-value=5.3e-17 Score=187.13 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=98.7
Q ss_pred hHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 492 ~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
......|...+...+.... ..+.++||||++....+.+...|...|+++..++|.+..++|..+...|+.+ -+++
T Consensus 403 ~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlI 477 (762)
T TIGR03714 403 YATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG----AVTV 477 (762)
T ss_pred EECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC----eEEE
Confidence 3445678887777776654 3578999999999999999999999999999999999988876665555433 3789
Q ss_pred ecCCcccccccC---------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 572 SSKAGGCGLNLI---------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 572 St~agg~GLNL~---------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
+|..+|.|+++. +.+.|+.|+++-+. .+.|+.||++|.|..-.+.
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999998 88999999999765 4599999999999875543
No 62
>KOG0350|consensus
Probab=99.75 E-value=1.4e-16 Score=169.32 Aligned_cols=390 Identities=17% Similarity=0.216 Sum_probs=225.0
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHh
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKN 219 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~n 219 (755)
+.....++|-|...+-|++.-+.-......+-+.++..+|+|||+.-..-+..++...+.. +-+++||+|. .|..|
T Consensus 154 k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~---~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 154 KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVK---RLRAVVIVPTRELALQ 230 (620)
T ss_pred HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCcc---ceEEEEEeeHHHHHHH
Confidence 3345689999999999998866422223456678899999999998877777777665542 2468999999 66788
Q ss_pred HHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhc---CCccEEEEeCCccc
Q psy5647 220 WCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK---NEVGLVLCDEGHRL 295 (755)
Q Consensus 220 W~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~---~~~~lvIiDEaH~l 295 (755)
-.++|.+|.++ .+.+....|...-+ ....+.... ......||+|+|...+-.|...-.. ....++|||||.|+
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~--~E~~qL~~~-~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRl 307 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLE--DEARQLASD-PPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRL 307 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchH--HHHHHHhcC-CCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHH
Confidence 99999999987 55655555543221 111222221 1123458999999999877653222 24568999999998
Q ss_pred CCCccHHH--HHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 296 KNCESQTY--QALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 296 Kn~~s~~~--~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
-+..-+-| ..+..++...++.+.+ .++.+..-..|-.++.. ...+.++
T Consensus 308 l~qsfQ~Wl~~v~~~~~~~k~~~~~~--------nii~~~~~~~pt~~~e~---~t~~~~~------------------- 357 (620)
T KOG0350|consen 308 LDQSFQEWLDTVMSLCKTMKRVACLD--------NIIRQRQAPQPTVLSEL---LTKLGKL------------------- 357 (620)
T ss_pred HHHHHHHHHHHHHHHhCCchhhcChh--------hhhhhcccCCchhhHHH---HhhcCCc-------------------
Confidence 66332221 1122223332222221 11111111111111100 0000000
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
...|..++-+-.+-++...+.. | -
T Consensus 358 -~~~l~kL~~satLsqdP~Kl~~-l------------------------------------------------------~ 381 (620)
T KOG0350|consen 358 -YPPLWKLVFSATLSQDPSKLKD-L------------------------------------------------------T 381 (620)
T ss_pred -CchhHhhhcchhhhcChHHHhh-h------------------------------------------------------h
Confidence 0001111111111111110000 0 0
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
.++|.++.-... ....-.+|... ....+..+.--|-..+..++.. ....++|+|+++.+....+...
T Consensus 382 l~~Prl~~v~~~------~~~ryslp~~l----~~~~vv~~~~~kpl~~~~lI~~---~k~~r~lcf~~S~~sa~Rl~~~ 448 (620)
T KOG0350|consen 382 LHIPRLFHVSKP------LIGRYSLPSSL----SHRLVVTEPKFKPLAVYALITS---NKLNRTLCFVNSVSSANRLAHV 448 (620)
T ss_pred cCCCceEEeecc------cceeeecChhh----hhceeecccccchHhHHHHHHH---hhcceEEEEecchHHHHHHHHH
Confidence 011111100000 00000000000 0000001111222333444443 3478999999999998888777
Q ss_pred HH----hcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhc
Q psy5647 534 SK----LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR 609 (755)
Q Consensus 534 L~----~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R 609 (755)
|+ ....++..++|+.+.+.|.+++.+|+.+... +|++++++..|+++.+.+.||.||||-.-..|..|+||..|
T Consensus 449 L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~--vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTAR 526 (620)
T KOG0350|consen 449 LKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN--VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTAR 526 (620)
T ss_pred HHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce--EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccc
Confidence 76 3356677799999999999999999986654 78999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHh
Q psy5647 610 DGQKKPCFVYRFLSTGSIEEKMMQRQAHKKAL 641 (755)
Q Consensus 610 ~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l 641 (755)
-||.- +.|.++... |++.|-....|...
T Consensus 527 Agq~G--~a~tll~~~--~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 527 AGQDG--YAITLLDKH--EKRLFSKLLKKTNL 554 (620)
T ss_pred ccCCc--eEEEeeccc--cchHHHHHHHHhcc
Confidence 99976 455666553 45666555555443
No 63
>KOG0345|consensus
Probab=99.75 E-value=6.9e-16 Score=163.04 Aligned_cols=315 Identities=23% Similarity=0.314 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH-HcCCCCCCCCCeEEEEeCCcch-HhH---
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQGPLAKPLIDKAIIVAPSSLV-KNW--- 220 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~-~~~~~~~p~~~~~LIV~P~sll-~nW--- 220 (755)
..-|-|..++-.+. ++.-+..-..+|+|||+.-+.-+...+ ++.....|.-=-.|||+|+-=+ .|-
T Consensus 28 ~mTpVQa~tIPlll---------~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V 98 (567)
T KOG0345|consen 28 KMTPVQAATIPLLL---------KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREV 98 (567)
T ss_pred ccCHHHHhhhHHHh---------cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHH
Confidence 56689999998874 466788888999999999998887776 3333333332357999999444 332
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh----hhhcCCccEEEEeCCcccC
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS----VLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~----~l~~~~~~lvIiDEaH~lK 296 (755)
...|..+++. +....+-||. .....+..|... ..+|+|.|+..+..... .+......++|+|||.++-
T Consensus 99 ~~~F~~~l~~-l~~~l~vGG~--~v~~Di~~fkee-----~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLl 170 (567)
T KOG0345|consen 99 AQPFLEHLPN-LNCELLVGGR--SVEEDIKTFKEE-----GPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLL 170 (567)
T ss_pred HHHHHHhhhc-cceEEEecCc--cHHHHHHHHHHh-----CCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHh
Confidence 3344455544 4444444542 233344444443 34799999988765443 2444467899999999996
Q ss_pred CCc--cHHHHHHHccccccEE-EeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 297 NCE--SQTYQALMGLKAKRRV-LLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 297 n~~--s~~~~al~~l~~~~rl-lLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
... ......+..|+..||- +.|||--+. ..+
T Consensus 171 dmgFe~~~n~ILs~LPKQRRTGLFSATq~~~-v~d--------------------------------------------- 204 (567)
T KOG0345|consen 171 DMGFEASVNTILSFLPKQRRTGLFSATQTQE-VED--------------------------------------------- 204 (567)
T ss_pred cccHHHHHHHHHHhcccccccccccchhhHH-HHH---------------------------------------------
Confidence 543 5555666777666664 447774221 111
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEE-cC--CHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI-KM--TDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~-~l--s~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~L 450 (755)
+....+|.... ..|.. .. +|....+
T Consensus 205 --------L~raGLRNpv~-----------V~V~~k~~~~tPS~L~~--------------------------------- 232 (567)
T KOG0345|consen 205 --------LARAGLRNPVR-----------VSVKEKSKSATPSSLAL--------------------------------- 232 (567)
T ss_pred --------HHHhhccCcee-----------eeecccccccCchhhcc---------------------------------
Confidence 11111221000 00000 00 0000000
Q ss_pred HHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHH
Q psy5647 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 451 rk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l 530 (755)
.-...+..-|+..|.++|.. ...+|+|||...-...+++
T Consensus 233 --------------------------------------~Y~v~~a~eK~~~lv~~L~~---~~~kK~iVFF~TCasVeYf 271 (567)
T KOG0345|consen 233 --------------------------------------EYLVCEADEKLSQLVHLLNN---NKDKKCIVFFPTCASVEYF 271 (567)
T ss_pred --------------------------------------eeeEecHHHHHHHHHHHHhc---cccccEEEEecCcchHHHH
Confidence 00112334566677777765 3478999998888888888
Q ss_pred HHHHHhc--CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 531 ERLSKLR--GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 531 ~~~L~~~--g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
..++... +..++.++|.++.+.|.+.++.|.+.++. +|++|++++.||++++.+.||.||||-+|..+.+|.||..
T Consensus 272 ~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTa 349 (567)
T KOG0345|consen 272 GKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTA 349 (567)
T ss_pred HHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhh
Confidence 7777654 77899999999999999999999985554 6899999999999999999999999999999999999999
Q ss_pred ccCCCCcEEE
Q psy5647 609 RDGQKKPCFV 618 (755)
Q Consensus 609 R~GQ~k~V~V 618 (755)
|.|..-.-.|
T Consensus 350 R~gr~G~Aiv 359 (567)
T KOG0345|consen 350 RAGREGNAIV 359 (567)
T ss_pred hccCccceEE
Confidence 9997754433
No 64
>COG4889 Predicted helicase [General function prediction only]
Probab=99.75 E-value=6.6e-18 Score=188.00 Aligned_cols=170 Identities=21% Similarity=0.248 Sum_probs=108.9
Q ss_pred eeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cc
Q psy5647 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SL 216 (755)
Q Consensus 138 ~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sl 216 (755)
.+++.-...+||||.+++....+.+. .+-.|=|-+.+|+|||++++-+...+.. .++|.++|+ +|
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~-----~n~RGkLIMAcGTGKTfTsLkisEala~---------~~iL~LvPSIsL 218 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFS-----DNDRGKLIMACGTGKTFTSLKISEALAA---------ARILFLVPSISL 218 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcc-----cccCCcEEEecCCCccchHHHHHHHHhh---------hheEeecchHHH
Confidence 34444557999999999998877553 2334456678999999999998877754 358999999 88
Q ss_pred hHhHHHHHHHHhCCCceEEEecCCCHHH-----------------HHHHHHHHHHHhCCCCCCCEEEEehhhHhhh--hh
Q psy5647 217 VKNWCNEITKWLGGRVAALPIDGGSKAE-----------------IDNKLNSFMQTYGRRPVNPILVISYETFRSH--AS 277 (755)
Q Consensus 217 l~nW~~E~~kw~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~--~~ 277 (755)
+.|--+|+..-....+....+.+..+.. ..+.+..-+....+..+.-|+++||+++-.. +.
T Consensus 219 LsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQ 298 (1518)
T COG4889 219 LSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQ 298 (1518)
T ss_pred HHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHH
Confidence 8886555443222234444443322110 0112222222223344556999999998654 33
Q ss_pred hhhcCCccEEEEeCCcccCCC------ccHHHHH--HHccccccEEEeecCC
Q psy5647 278 VLHKNEVGLVLCDEGHRLKNC------ESQTYQA--LMGLKAKRRVLLSGTP 321 (755)
Q Consensus 278 ~l~~~~~~lvIiDEaH~lKn~------~s~~~~a--l~~l~~~~rllLTGTP 321 (755)
...-.+||+||||||||--.. .|..++. -..+++.+|+.+||||
T Consensus 299 e~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 299 EAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred HcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 444568999999999996432 1222211 1335788999999999
No 65
>KOG0333|consensus
Probab=99.74 E-value=1.2e-16 Score=170.43 Aligned_cols=362 Identities=19% Similarity=0.241 Sum_probs=224.0
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC-----CCCCCCeEEEEeCC-cchHhH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL-----AKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~-----~~p~~~~~LIV~P~-sll~nW 220 (755)
--|-|+.++--+ ...+..|.-.|+|+|||..-+.-+...+..-|. ....-..++|++|+ -|..|-
T Consensus 268 ptpIqR~aipl~---------lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqI 338 (673)
T KOG0333|consen 268 PTPIQRQAIPLG---------LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQI 338 (673)
T ss_pred CchHHHhhccch---------hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHH
Confidence 347788887644 346788999999999996554433333322221 11112357999999 556677
Q ss_pred HHHHHHHhCC-CceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccC
Q psy5647 221 CNEITKWLGG-RVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 221 ~~E~~kw~~~-~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lK 296 (755)
..|-.|+... .+.++.+-|+ +.++....+. ....|+|.|...+...+. .|...+...||+|||.++-
T Consensus 339 eeEt~kf~~~lg~r~vsvigg~s~EEq~fqls---------~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmi 409 (673)
T KOG0333|consen 339 EEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS---------MGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMI 409 (673)
T ss_pred HHHHHHhcccccceEEEEecccchhhhhhhhh---------ccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhh
Confidence 8888888653 4666666665 3333222222 346799999988765442 3444578899999999874
Q ss_pred CC--ccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 297 NC--ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 297 n~--~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
.. .-...+.|.. -|..|. .|+ ..+. .+
T Consensus 410 DmgfE~dv~~iL~~-----------mPssn~-----------k~~-----------------------tde~---~~--- 438 (673)
T KOG0333|consen 410 DMGFEPDVQKILEQ-----------MPSSNA-----------KPD-----------------------TDEK---EG--- 438 (673)
T ss_pred cccccHHHHHHHHh-----------CCcccc-----------CCC-----------------------ccch---hh---
Confidence 31 1112221111 121111 000 0000 00
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceE--EEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTE--QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e--~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
...+...+. --.++. ....+.|+|.-..+-+.++....+. ..|..++.
T Consensus 439 ~~~~~~~~~--------------~~k~yrqT~mftatm~p~verlar~ylr~pv~v---tig~~gk~------------- 488 (673)
T KOG0333|consen 439 EERVRKNFS--------------SSKKYRQTVMFTATMPPAVERLARSYLRRPVVV---TIGSAGKP------------- 488 (673)
T ss_pred HHHHHhhcc--------------cccceeEEEEEecCCChHHHHHHHHHhhCCeEE---EeccCCCC-------------
Confidence 011111100 001222 3344567777666666655432110 00100000
Q ss_pred HhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHH
Q psy5647 453 LCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER 532 (755)
Q Consensus 453 ~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~ 532 (755)
+|.+ + -.-.+...+.|...|..+|+.. ....+|||.|.....|.|.+
T Consensus 489 ---~~rv------------e---------------Q~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 489 ---TPRV------------E---------------QKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred ---ccch------------h---------------eEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHH
Confidence 0000 0 0011234467777777777654 46899999999999999999
Q ss_pred HHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCC
Q psy5647 533 LSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612 (755)
Q Consensus 533 ~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ 612 (755)
.|.+.||.+++|+|+.+.++|.-++..|.++... +|++|+++|.||+++..++||.||..-+...|.++|||.+|-|+
T Consensus 536 ~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d--IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk 613 (673)
T KOG0333|consen 536 ILEKAGYKVTTLHGGKSQEQRENALADFREGTGD--ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGK 613 (673)
T ss_pred HHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC--EEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccccc
Confidence 9999999999999999999999999999986665 78999999999999999999999999999999999999999998
Q ss_pred CCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCC
Q psy5647 613 KKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDC 648 (755)
Q Consensus 613 ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~ 648 (755)
.-.+ ..|++...-+ -.| .-|+.|...+...
T Consensus 614 ~Gta--iSflt~~dt~-v~y---dLkq~l~es~~s~ 643 (673)
T KOG0333|consen 614 SGTA--ISFLTPADTA-VFY---DLKQALRESVKSH 643 (673)
T ss_pred Ccee--EEEeccchhH-HHH---HHHHHHHHhhhcc
Confidence 7644 3455543221 112 2355555555543
No 66
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.74 E-value=5.2e-16 Score=173.22 Aligned_cols=310 Identities=18% Similarity=0.280 Sum_probs=206.6
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~ 221 (755)
|...|-..|+.+++-+..-+.. ...-.=+|--|+|+|||+.|+..+......|.. +.+.+|+.++ .|-.
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~---~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q-------~ALMAPTEILA~QH~ 328 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLAS---PVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQ-------AALMAPTEILAEQHY 328 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcC---chhhHHHhccCcCCCHHHHHHHHHHHHHHcCCe-------eEEeccHHHHHHHHH
Confidence 4457888999999987664432 223344777799999999999999888887744 6899999776 6788
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+.+.+|++. .+.+....|..+...++....-... ...+++|-|+..|...+.. .+..+||+||=||+.-
T Consensus 329 ~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~----G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV--- 398 (677)
T COG1200 329 ESLRKWLEPLGIRVALLTGSLKGKARKEILEQLAS----GEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGV--- 398 (677)
T ss_pred HHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhC----CCCCEEEEcchhhhcceee---cceeEEEEeccccccH---
Confidence 899999985 5666666676554444444333332 3468999999988755432 3578999999999843
Q ss_pred HHHHHHHcc-c-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGL-K-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 301 ~~~~al~~l-~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
..-..+..- . .++.+.||||||.-.+.= - .|+.
T Consensus 399 ~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl----t----------------~fgD------------------------- 433 (677)
T COG1200 399 HQRLALREKGEQNPHVLVMTATPIPRTLAL----T----------------AFGD------------------------- 433 (677)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCCchHHHHH----H----------------Hhcc-------------------------
Confidence 333334333 4 589999999999877541 0 0110
Q ss_pred HHhHhHHHHhcchhHhhccCCCce-E-EEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKT-E-QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~-e-~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
++ -.+.+.+|+.. . ...+++- ..-.++|+.+. ..+.
T Consensus 434 ---ld--------vS~IdElP~GRkpI~T~~i~~-~~~~~v~e~i~------~ei~------------------------ 471 (677)
T COG1200 434 ---LD--------VSIIDELPPGRKPITTVVIPH-ERRPEVYERIR------EEIA------------------------ 471 (677)
T ss_pred ---cc--------chhhccCCCCCCceEEEEecc-ccHHHHHHHHH------HHHH------------------------
Confidence 00 01123477652 2 2222222 22233443321 1111
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechh--------HHH
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQ--------TLD 528 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~--------~ld 528 (755)
.|+++-++|.-.+ ...
T Consensus 472 --------------------------------------------------------~GrQaY~VcPLIeESE~l~l~~a~ 495 (677)
T COG1200 472 --------------------------------------------------------KGRQAYVVCPLIEESEKLELQAAE 495 (677)
T ss_pred --------------------------------------------------------cCCEEEEEeccccccccchhhhHH
Confidence 1333333333221 111
Q ss_pred HHHHHHHh--cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC-CCCCcHHHHhH
Q psy5647 529 LFERLSKL--RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDDQAMA 605 (755)
Q Consensus 529 ~l~~~L~~--~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~-WNp~~~~Qa~g 605 (755)
.+...|+. .++++..++|.|+.+++++++.+|+++... +|+||.+..+|+|++.|+-+|+.|+. +--+..-|-.|
T Consensus 496 ~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~--ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRG 573 (677)
T COG1200 496 ELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID--ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRG 573 (677)
T ss_pred HHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc--EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhcc
Confidence 12222332 266789999999999999999999986665 88999999999999999999999987 56788899999
Q ss_pred hhhccCCCCcEE
Q psy5647 606 RVWRDGQKKPCF 617 (755)
Q Consensus 606 R~~R~GQ~k~V~ 617 (755)
|++|-+...-|.
T Consensus 574 RVGRG~~qSyC~ 585 (677)
T COG1200 574 RVGRGDLQSYCV 585 (677)
T ss_pred ccCCCCcceEEE
Confidence 999966555554
No 67
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.74 E-value=6.7e-16 Score=168.75 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=71.1
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcC--CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEE
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRG--YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLV 589 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g--~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI 589 (755)
..+.|+|||++.....+.+...|+..| +.+..++|.++..+|.+.. ...+|++|.+.+.|||+.. +.||
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEEEEecHHhcccCCCC-ceEE
Confidence 357799999999999999999999865 5788999999998886543 2247899999999999985 4665
Q ss_pred EeCCCCCCCcHHHHhHhhh
Q psy5647 590 MFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 590 ~~D~~WNp~~~~Qa~gR~~ 608 (755)
++ +-++..+.||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 567889999999974
No 68
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.73 E-value=1.1e-15 Score=176.99 Aligned_cols=344 Identities=16% Similarity=0.104 Sum_probs=217.1
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHH-HHHHcCCCCCCCCCeEEEEeCCcchH-hHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMW-TLLRQGPLAKPLIDKAIIVAPSSLVK-NWC 221 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~-~l~~~~~~~~p~~~~~LIV~P~sll~-nW~ 221 (755)
...++|+|+.++..+ ..+.++++..++|+|||..|+.-+. .++..++......=.+|.|.|.-.+. .-.
T Consensus 20 ~~~~t~~Q~~a~~~i---------~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~ 90 (814)
T COG1201 20 FTSLTPPQRYAIPEI---------HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIR 90 (814)
T ss_pred cCCCCHHHHHHHHHH---------hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHH
Confidence 357899999999877 4678999999999999999988654 44454311111113589999995554 455
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhc--CCccEEEEeCCcccC
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHK--NEVGLVLCDEGHRLK 296 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~--~~~~lvIiDEaH~lK 296 (755)
+.+..|... .+.+-..+|.+....+++ ..+...+|+|||.|++...... +.. .+...||+||.|-+.
T Consensus 91 ~rL~~~~~~~G~~v~vRhGDT~~~er~r--------~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~ 162 (814)
T COG1201 91 RRLEEPLRELGIEVAVRHGDTPQSEKQK--------MLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALA 162 (814)
T ss_pred HHHHHHHHHcCCccceecCCCChHHhhh--------ccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhh
Confidence 556666542 334444445444332221 1234578999999999754321 111 256789999999998
Q ss_pred CCc--cHHHHHHHcc---c-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHH
Q psy5647 297 NCE--SQTYQALMGL---K-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTK 370 (755)
Q Consensus 297 n~~--s~~~~al~~l---~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~ 370 (755)
+.+ ++.+-.+..+ . .-.||+||||-- ++.|. ..|+.++-.
T Consensus 163 ~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~----------------------------- 208 (814)
T COG1201 163 ESKRGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD----------------------------- 208 (814)
T ss_pred ccccchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC-----------------------------
Confidence 764 5555555444 2 467999999942 33332 333322100
Q ss_pred HHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHH
Q psy5647 371 ANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450 (755)
Q Consensus 371 ~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~L 450 (755)
....+......+.+.-+.++-......
T Consensus 209 -------------------~~~Iv~~~~~k~~~i~v~~p~~~~~~~---------------------------------- 235 (814)
T COG1201 209 -------------------PCEIVDVSAAKKLEIKVISPVEDLIYD---------------------------------- 235 (814)
T ss_pred -------------------ceEEEEcccCCcceEEEEecCCccccc----------------------------------
Confidence 000111111112222221110000000
Q ss_pred HHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHH
Q psy5647 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 451 rk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l 530 (755)
. ....+- +..+...++ ....++||+|.+++.+.+
T Consensus 236 ----~-------------------------------------~~~~~~---~~~i~~~v~--~~~ttLIF~NTR~~aE~l 269 (814)
T COG1201 236 ----E-------------------------------------ELWAAL---YERIAELVK--KHRTTLIFTNTRSGAERL 269 (814)
T ss_pred ----c-------------------------------------chhHHH---HHHHHHHHh--hcCcEEEEEeChHHHHHH
Confidence 0 000111 111222222 245899999999999999
Q ss_pred HHHHHhcC-CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhc
Q psy5647 531 ERLSKLRG-YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR 609 (755)
Q Consensus 531 ~~~L~~~g-~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R 609 (755)
...|+..+ ..+..-+||.+.+.|...-++|.++.-. .+++|.....||+.-..+.||.|.+|-.-+...||+||+++
T Consensus 270 ~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr--avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 270 AFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK--AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred HHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce--EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhcccccc
Confidence 99998887 8888999999999999999999987633 56888999999999999999999999999999999999865
Q ss_pred -cCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHh
Q psy5647 610 -DGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSS 643 (755)
Q Consensus 610 -~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~ 643 (755)
.|. +--+.+++.+ .++.+--....+..+..
T Consensus 348 r~~~---~Skg~ii~~~-r~dllE~~vi~~~a~~g 378 (814)
T COG1201 348 RLGE---VSKGIIIAED-RDDLLECLVLADLALEG 378 (814)
T ss_pred ccCC---cccEEEEecC-HHHHHHHHHHHHHHHhC
Confidence 443 3334555666 66665555555544433
No 69
>KOG0328|consensus
Probab=99.72 E-value=1.7e-16 Score=157.34 Aligned_cols=315 Identities=17% Similarity=0.197 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHH-HHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ-CITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlq-aIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw 227 (755)
.-|..++..+ -.++.+|.-..-|+|||.+ +|+++..+--... --.+||+.|+--+.....+.-.-
T Consensus 52 ~IQqrAi~~I---------lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r-----~tQ~lilsPTRELa~Qi~~vi~a 117 (400)
T KOG0328|consen 52 AIQQRAIPQI---------LKGRDVIAQAQSGTGKTATFSISVLQSLDISVR-----ETQALILSPTRELAVQIQKVILA 117 (400)
T ss_pred HHHhhhhhhh---------hcccceEEEecCCCCceEEEEeeeeeecccccc-----eeeEEEecChHHHHHHHHHHHHH
Confidence 3577777665 3577899999999999975 3333322211111 12379999996555444444444
Q ss_pred hCC--CceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCCC--cc
Q psy5647 228 LGG--RVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKNC--ES 300 (755)
Q Consensus 228 ~~~--~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn~--~s 300 (755)
+++ ++.+...-||.. .+..+++. ...+|+.-|+..+-... ..|.-....++|+|||.-+-|. ..
T Consensus 118 lg~~mnvq~hacigg~n~gedikkld---------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~ 188 (400)
T KOG0328|consen 118 LGDYMNVQCHACIGGKNLGEDIKKLD---------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKE 188 (400)
T ss_pred hcccccceEEEEecCCccchhhhhhc---------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHH
Confidence 443 567776666543 22222222 12357777777665433 3455567899999999988554 57
Q ss_pred HHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 301 ~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
++|...+.++ ....+++|||- +.|+..+.++..+++.
T Consensus 189 Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv-------------------------------------- 226 (400)
T KOG0328|consen 189 QIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV-------------------------------------- 226 (400)
T ss_pred HHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce--------------------------------------
Confidence 7888888885 67788999995 2333333333322211
Q ss_pred HhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHH-HHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY-TNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 380 ~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY-~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
...+-.-++|.+-...| -.. +
T Consensus 227 ----------------------rilvkrdeltlEgIKqf~v~v-e----------------------------------- 248 (400)
T KOG0328|consen 227 ----------------------RILVKRDELTLEGIKQFFVAV-E----------------------------------- 248 (400)
T ss_pred ----------------------eEEEecCCCchhhhhhheeee-c-----------------------------------
Confidence 00111111222111111 000 0
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g 538 (755)
...=|+..|..|-..+ +=...||||+.....|+|.+.++...
T Consensus 249 -----------------------------------~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~~n 290 (400)
T KOG0328|consen 249 -----------------------------------KEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREAN 290 (400)
T ss_pred -----------------------------------hhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHhhC
Confidence 0001233333333332 23578999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
+.+..++|.|+.++|.+++..|+.+... +|++|++-+.|++++..+.||.||.|-|+..|+.|+||.+|.|.+- .+
T Consensus 291 ftVssmHGDm~qkERd~im~dFRsg~Sr--vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--va 366 (400)
T KOG0328|consen 291 FTVSSMHGDMEQKERDKIMNDFRSGKSR--VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VA 366 (400)
T ss_pred ceeeeccCCcchhHHHHHHHHhhcCCce--EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eE
Confidence 9999999999999999999999985554 7899999999999999999999999999999999999999999754 34
Q ss_pred EEEeeCCCHH
Q psy5647 619 YRFLSTGSIE 628 (755)
Q Consensus 619 yrlv~~gTiE 628 (755)
..|+....++
T Consensus 367 inFVk~~d~~ 376 (400)
T KOG0328|consen 367 INFVKSDDLR 376 (400)
T ss_pred EEEecHHHHH
Confidence 5777766544
No 70
>KOG0348|consensus
Probab=99.72 E-value=3.9e-16 Score=166.89 Aligned_cols=115 Identities=23% Similarity=0.413 Sum_probs=92.6
Q ss_pred hccCCCEEEEEEechhHHHHHHHHHHh----------------------cCCcEEEEcCCCCHHHHHHHHHHHccCCCce
Q psy5647 510 KMTTDDKIVLVSNYTQTLDLFERLSKL----------------------RGYKYVRLDGSMTIKKRAKVVETFNKTSNEF 567 (755)
Q Consensus 510 ~~~~~~KvlIFs~~~~~ld~l~~~L~~----------------------~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~ 567 (755)
+.....|+|||....++.+.-..++.. .+.++.+++|+|++.+|......|......
T Consensus 421 k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~- 499 (708)
T KOG0348|consen 421 KFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA- 499 (708)
T ss_pred hhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce-
Confidence 334466999998888876644443321 145799999999999999999999875554
Q ss_pred EEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHH
Q psy5647 568 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628 (755)
Q Consensus 568 v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiE 628 (755)
+|++|++.+.||+|+....||-||+|..++.|..|+||.-|+|-+-.-. -|+..+..|
T Consensus 500 -VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al--LfL~P~Eae 557 (708)
T KOG0348|consen 500 -VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL--LFLLPSEAE 557 (708)
T ss_pred -EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE--EEecccHHH
Confidence 8899999999999999999999999999999999999999999875433 245555555
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.72 E-value=7.2e-16 Score=189.31 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=83.4
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcC---------------------------------CcEEEEcCCCCHHHHHHHHHHH
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRG---------------------------------YKYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g---------------------------------~~~~~ldG~~~~~~R~~~v~~F 560 (755)
+.++|||+|.+...+.+...|+... +.+..++|+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 5789999999999998888776531 1145678999999999999999
Q ss_pred ccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhcc
Q psy5647 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610 (755)
Q Consensus 561 n~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~ 610 (755)
+++.-. +|++|.+.+.|||+...+.||.|+.|.+.+.+.|++||++|.
T Consensus 324 K~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 986653 789999999999999999999999999999999999999996
No 72
>KOG0342|consensus
Probab=99.71 E-value=3.7e-16 Score=166.23 Aligned_cols=112 Identities=18% Similarity=0.307 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcc
Q psy5647 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGG 577 (755)
Q Consensus 498 Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg 577 (755)
++.+|..+|.... +..||+||+..-.+.+.+.++|+...+++..|+|..++.+|..+..+|.+.... +|++|++++
T Consensus 316 ~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaA 391 (543)
T KOG0342|consen 316 RFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAA 391 (543)
T ss_pred hHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhh
Confidence 3455555555543 238999999999999999999999999999999999999999999999984443 789999999
Q ss_pred cccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 578 CGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 578 ~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
.|+|.+..+.||-||||-+|..|++|+||..|-|-+
T Consensus 392 RGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~ 427 (543)
T KOG0342|consen 392 RGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKE 427 (543)
T ss_pred ccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCC
Confidence 999999999999999999999999999999997765
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.5e-15 Score=173.85 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=101.1
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|...|...+.... ..+.++||||++....+.+...|...|+++..++|.+...++..+...+..+ -++++
T Consensus 408 ~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIA 482 (790)
T PRK09200 408 VTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVA 482 (790)
T ss_pred cCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC----eEEEE
Confidence 345678888877776654 3478999999999999999999999999999999999888877666666533 37899
Q ss_pred cCCccccccc---CCCC-----EEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 573 SKAGGCGLNL---IGAN-----RLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 573 t~agg~GLNL---~~a~-----~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|..+|.|+|+ .+.. +||.+|.|-|+..|.|+.||++|.|..-.+
T Consensus 483 TdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 483 TNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred ccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 9999999999 4676 999999999999999999999999987544
No 74
>KOG0340|consensus
Probab=99.70 E-value=2.6e-15 Score=153.69 Aligned_cols=333 Identities=17% Similarity=0.228 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNEITK 226 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E~~k 226 (755)
-|-|...|-.++ .++.||=+.-+|+|||..-..-+..-+...|++.= .||++|+.=+ .|-.+.| .
T Consensus 31 TpiQ~~cIpkIL---------eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giF----alvlTPTrELA~QiaEQF-~ 96 (442)
T KOG0340|consen 31 TPIQQACIPKIL---------EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIF----ALVLTPTRELALQIAEQF-I 96 (442)
T ss_pred CchHhhhhHHHh---------cccccccccccCCCcchhhhHHHHHhhccCCCcce----EEEecchHHHHHHHHHHH-H
Confidence 377887777664 47789999999999998777666666666665433 6999999554 4544445 4
Q ss_pred HhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh------hcCCccEEEEeCCcccCCC
Q psy5647 227 WLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL------HKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 227 w~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l------~~~~~~lvIiDEaH~lKn~ 298 (755)
.++. .+++-.+.|+...-... ..-....+|+|++.+.+..+..-- ...+..++++|||.++-+.
T Consensus 97 alGk~l~lK~~vivGG~d~i~qa--------~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~ 168 (442)
T KOG0340|consen 97 ALGKLLNLKVSVIVGGTDMIMQA--------AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG 168 (442)
T ss_pred HhcccccceEEEEEccHHHhhhh--------hhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc
Confidence 4443 45666677775322111 111134689999999987654211 1124568999999998664
Q ss_pred c-c-HHHHHHHccccc-cEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHH
Q psy5647 299 E-S-QTYQALMGLKAK-RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375 (755)
Q Consensus 299 ~-s-~~~~al~~l~~~-~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~ 375 (755)
. . ...-....+..+ -.+++|||- .+++.+++ ..|+..+.
T Consensus 169 ~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~---------------------~~~i~k~~---------------- 210 (442)
T KOG0340|consen 169 CFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLF---------------------GCPITKSI---------------- 210 (442)
T ss_pred chhhHHhhhhccCCCccceEEEEeeh-hhHHHHhh---------------------cCCccccc----------------
Confidence 2 1 111122233333 568888883 22222221 11111100
Q ss_pred HHHHHhHhHHHHhcchhHhhccCCCceEEEEEE-cCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI-KMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 376 ~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~-~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
-+.+.. +-.+.-..+|..+
T Consensus 211 ---------------------------a~~~e~~~~vstvetL~q~y--------------------------------- 230 (442)
T KOG0340|consen 211 ---------------------------AFELEVIDGVSTVETLYQGY--------------------------------- 230 (442)
T ss_pred ---------------------------ceEEeccCCCCchhhhhhhe---------------------------------
Confidence 000000 0011111122111
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
+.....+|-.+|..+|...+......++||+|.+.+..+|...|
T Consensus 231 ------------------------------------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l 274 (442)
T KOG0340|consen 231 ------------------------------------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL 274 (442)
T ss_pred ------------------------------------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH
Confidence 11223455566777777776546789999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
+..++++..+++.|++++|...+.+|+.+.-. +|+.|++++.||+++..+-||+||.|-.|..|+.|.||.-|-|..-
T Consensus 275 ~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~--iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 275 KNLEVRVVSLHSQMPQKERLAALSRFRSNAAR--ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKG 352 (442)
T ss_pred hhhceeeeehhhcchHHHHHHHHHHHhhcCcc--EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCc
Confidence 99999999999999999999999999975554 7899999999999999999999999999999999999998888764
Q ss_pred cEEEEEEeeCCCHH--HHHHHHHHHHHH
Q psy5647 615 PCFVYRFLSTGSIE--EKMMQRQAHKKA 640 (755)
Q Consensus 615 ~V~Vyrlv~~gTiE--EkI~~r~~~K~~ 640 (755)
. -..+++.-.+| ..|-++...|..
T Consensus 353 ~--aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 353 M--AISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred c--eEEEechhhHHHHHHHHHHHhcccc
Confidence 3 12344444443 234444444443
No 75
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.69 E-value=5.8e-15 Score=171.08 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=88.3
Q ss_pred CCEEEEEEechhHHHHHHHHHHhc--CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEe
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLR--GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMF 591 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~--g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~ 591 (755)
+.++|||++.....+.+.+.|... ++.+..++|+++.. .+.+++|.. ++.+-+|+||..+++||++.+.+.||-+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~-~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYS-SKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhc-cCceeEEeccChhhccccccCeeEEEEC
Confidence 568999999999999999999887 79999999999864 466777742 2234578999999999999999999999
Q ss_pred C----CC--------CCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 592 D----PD--------WNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 592 D----~~--------WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
+ |. .+.+.+.||.||++|. ++-..|+|++....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 7 21 2666788999999987 45678899988765
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.69 E-value=2.6e-15 Score=172.25 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=100.6
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
...|+..+.+.+.... ..+..|||||++....+.+...|...|+++..++|. ..+|...+..|..++.. ++++|.
T Consensus 387 ~~~k~~ai~~~i~~~~-~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERH-AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEec
Confidence 3456666655554444 458999999999999999999999999999999998 67899999999865554 789999
Q ss_pred CcccccccCC-------CCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 575 AGGCGLNLIG-------ANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 575 agg~GLNL~~-------a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
.+|+|+++.. .-+||.++.+-|+..+.|+.||++|.|..-...
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~ 511 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSR 511 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceE
Confidence 9999999976 779999999999999999999999999885543
No 77
>KOG0335|consensus
Probab=99.68 E-value=2.2e-15 Score=162.99 Aligned_cols=320 Identities=18% Similarity=0.240 Sum_probs=207.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHH-HHHHcCCC-----CCCCCCeEEEEeCC-cch
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMW-TLLRQGPL-----AKPLIDKAIIVAPS-SLV 217 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~-~l~~~~~~-----~~p~~~~~LIV~P~-sll 217 (755)
...-|+|+-++.-+ ..+++.+.+.++|+|||..-+.-+. .+++.++. ..+....+||++|+ .|+
T Consensus 95 ~~ptpvQk~sip~i---------~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~ 165 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII---------SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELV 165 (482)
T ss_pred cCCCcceeecccee---------ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHh
Confidence 35669999888654 5788889999999999998777544 44444332 22223468999999 888
Q ss_pred HhHHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcc
Q psy5647 218 KNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHR 294 (755)
Q Consensus 218 ~nW~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~ 294 (755)
.|-.+|..|+... .+....++++.... ..... .....+++++|...+....+ .+......++|+|||.+
T Consensus 166 ~Qi~nea~k~~~~s~~~~~~~ygg~~~~--~q~~~------~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADr 237 (482)
T KOG0335|consen 166 DQIYNEARKFSYLSGMKSVVVYGGTDLG--AQLRF------IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADR 237 (482)
T ss_pred hHHHHHHHhhcccccceeeeeeCCcchh--hhhhh------hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHH
Confidence 9999999999875 56777777773321 11111 12357899999999876543 22233456999999998
Q ss_pred cCCC---ccHHHHHHHcc-----ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHh-ccCccccCCCCCCCH
Q psy5647 295 LKNC---ESQTYQALMGL-----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQ-YETPILRGQDSCASD 365 (755)
Q Consensus 295 lKn~---~s~~~~al~~l-----~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~-f~~pi~~g~~~~~~~ 365 (755)
+-.. ....-+.+... ..+.-++.|||=- -++..+ ...|... |.
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp-~~iq~l--------------~~~fl~~~yi------------- 289 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP-KEIQRL--------------AADFLKDNYI------------- 289 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCC-hhhhhh--------------HHHHhhccce-------------
Confidence 7541 12222222222 1233345555410 000000 0001000 00
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHH
Q psy5647 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445 (755)
Q Consensus 366 ~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~ 445 (755)
+++ -..+...-.-....+++|.
T Consensus 290 --------------------~la--V~rvg~~~~ni~q~i~~V~------------------------------------ 311 (482)
T KOG0335|consen 290 --------------------FLA--VGRVGSTSENITQKILFVN------------------------------------ 311 (482)
T ss_pred --------------------EEE--EeeeccccccceeEeeeec------------------------------------
Confidence 000 0000000111111122222
Q ss_pred HHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhc------cCCCEEEE
Q psy5647 446 SITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM------TTDDKIVL 519 (755)
Q Consensus 446 ~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~------~~~~KvlI 519 (755)
...|...|..+|..... ...++++|
T Consensus 312 -------------------------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlv 342 (482)
T KOG0335|consen 312 -------------------------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLV 342 (482)
T ss_pred -------------------------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEE
Confidence 12222222223322210 12359999
Q ss_pred EEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCc
Q psy5647 520 VSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599 (755)
Q Consensus 520 Fs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~ 599 (755)
|+...+..+.++.+|...++++..|+|..+..+|.+.++.|.++... +|+.|.+...|||+.+..+||+||.|-+-..
T Consensus 343 FvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p--vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~ 420 (482)
T KOG0335|consen 343 FVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP--VLVATNVAARGLDIPNVKHVINYDMPADIDD 420 (482)
T ss_pred EeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc--eEEEehhhhcCCCCCCCceeEEeecCcchhh
Confidence 99999999999999999999999999999999999999999987777 7899999999999999999999999999999
Q ss_pred HHHHhHhhhccCCCCcEEE
Q psy5647 600 DDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 600 ~~Qa~gR~~R~GQ~k~V~V 618 (755)
|..|+||.+|.|+.--.+.
T Consensus 421 YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 421 YVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred HHHhccccccCCCCceeEE
Confidence 9999999999999854443
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=9.7e-15 Score=166.70 Aligned_cols=131 Identities=13% Similarity=0.199 Sum_probs=103.6
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|...|.+++..+.. .+..+|||+++....+.+...|...|+++..|+|.++ +|...+..|...... ++++|
T Consensus 454 t~~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHA-QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEc
Confidence 346688888888877653 3578999999999999999999999999999999865 555566666543433 78999
Q ss_pred CCcccccccC---CCC-----EEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHH
Q psy5647 574 KAGGCGLNLI---GAN-----RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQR 634 (755)
Q Consensus 574 ~agg~GLNL~---~a~-----~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r 634 (755)
..+|.|+|+. ... +||.+|.|-|...|.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999987 443 9999999999999999999999999764433 233 346666644
No 79
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=2.5e-16 Score=155.46 Aligned_cols=155 Identities=25% Similarity=0.411 Sum_probs=109.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|||||.+++.-+.+.+... .....+++..+||+|||+.++.++..+.. ++|||||. +++.||.++|
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~--~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----------~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENK--KEERRVLLNAPTGSGKTIIALALILELAR----------KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTT--SGCSEEEEEESTTSSHHHHHHHHHHHHHC----------EEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhc--CCCCCEEEEECCCCCcChhhhhhhhcccc----------ceeEecCHHHHHHHHHHHH
Confidence 68999999999998876420 12578899999999999999998888875 48999999 8889999999
Q ss_pred HHHhCCCceEEEec------------CCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh-------------h
Q psy5647 225 TKWLGGRVAALPID------------GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV-------------L 279 (755)
Q Consensus 225 ~kw~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~-------------l 279 (755)
..+........... ........ ... .....++++++|..+...... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 142 (184)
T PF04851_consen 71 DDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDK---SES-----DNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKL 142 (184)
T ss_dssp HHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHH---HHH-----CBSS-SEEEEEHHHHHHHHHH---------GCHHG
T ss_pred HHhhhhhhhhcccccccccccccccccccccccc---ccc-----ccccccchhhHHHHHHhhcccccccccchhhhhhh
Confidence 88877543332211 00000000 000 123457999999999865432 2
Q ss_pred hcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCC
Q psy5647 280 HKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322 (755)
Q Consensus 280 ~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPi 322 (755)
....+++||+||||++.+... ++.+......++|+|||||-
T Consensus 143 ~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 143 LKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 234789999999999855332 67776688999999999994
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.68 E-value=1.1e-14 Score=178.35 Aligned_cols=134 Identities=19% Similarity=0.176 Sum_probs=92.2
Q ss_pred hhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhH
Q psy5647 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 142 ~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW 220 (755)
.++..++|+|+.++..+. .+..+++..++|+|||..++.++..+...+ .++|||+|+ .|+.||
T Consensus 76 ~~G~~pt~iQ~~~i~~il---------~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g-------~~alIL~PTreLa~Qi 139 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLL---------LGESFAIIAPTGVGKTTFGLVMSLYLAKKG-------KKSYIIFPTRLLVEQV 139 (1176)
T ss_pred hcCCCCcHHHHHHHHHHH---------CCCcEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccHHHHHHH
Confidence 345688999999887763 356788889999999965444333332221 458999999 888999
Q ss_pred HHHHHHHhCC-CceEEEecCCC---HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC
Q psy5647 221 CNEITKWLGG-RVAALPIDGGS---KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 221 ~~E~~kw~~~-~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK 296 (755)
.+.+.++... .+.+..+.++. ..+.......+. ....+|+|+|++.+..+...+....+++||+||||++-
T Consensus 140 ~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~-----~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 140 VEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLK-----EGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHh-----cCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 9999998764 33333333322 222222222211 12468999999999888776666679999999999974
No 81
>KOG0343|consensus
Probab=99.67 E-value=7.3e-15 Score=157.69 Aligned_cols=326 Identities=19% Similarity=0.260 Sum_probs=205.3
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc---CCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ---GPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~---~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
+..-|+..|-..+ .++-+|=|.-+|+|||+.-+--+...+.. ++..+- -+|||.|+ -|..|--.
T Consensus 92 ~teiQ~~~Ip~aL---------~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGl---GalIISPTRELA~QtFe 159 (758)
T KOG0343|consen 92 MTEIQRDTIPMAL---------QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGL---GALIISPTRELALQTFE 159 (758)
T ss_pred HHHHHHhhcchhc---------cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCc---eeEEecchHHHHHHHHH
Confidence 4467888876543 45677789999999999876654443322 222222 37999999 45555555
Q ss_pred HHHHHhCC-CceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCC
Q psy5647 223 EITKWLGG-RVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn 297 (755)
-+.+-... .+..-.+-||.. +.-..++ ...+|+|||...+..|.+. +...+..++|+|||.|+-.
T Consensus 160 vL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD 229 (758)
T KOG0343|consen 160 VLNKVGKHHDFSAGLIIGGKDVKFELERI----------SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD 229 (758)
T ss_pred HHHHHhhccccccceeecCchhHHHHHhh----------hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH
Confidence 55544322 233333334432 2222222 2347999999999988764 4445678999999999865
Q ss_pred Cc-cHHHH-HHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 298 CE-SQTYQ-ALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 298 ~~-s~~~~-al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
.. ..+.. .+..| ..+..++.|||+-. ++.+|.- +++-+|.
T Consensus 230 MGFk~tL~~Ii~~lP~~RQTLLFSATqt~-svkdLaR-LsL~dP~----------------------------------- 272 (758)
T KOG0343|consen 230 MGFKKTLNAIIENLPKKRQTLLFSATQTK-SVKDLAR-LSLKDPV----------------------------------- 272 (758)
T ss_pred HhHHHHHHHHHHhCChhheeeeeecccch-hHHHHHH-hhcCCCc-----------------------------------
Confidence 43 22222 33444 34556899999843 2333221 0111111
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEE---cCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHH
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI---KMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~---~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lr 451 (755)
...+.. .-+|.+. +
T Consensus 273 ----------------------------~vsvhe~a~~atP~~L-----------------------------------~ 289 (758)
T KOG0343|consen 273 ----------------------------YVSVHENAVAATPSNL-----------------------------------Q 289 (758)
T ss_pred ----------------------------EEEEeccccccChhhh-----------------------------------h
Confidence 001100 0001000 0
Q ss_pred HHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHH
Q psy5647 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531 (755)
Q Consensus 452 k~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~ 531 (755)
+.| +....-.|+.+|-..+.. +...|.|||..+-.....+.
T Consensus 290 ----------------------------Q~y--------~~v~l~~Ki~~L~sFI~s---hlk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 290 ----------------------------QSY--------VIVPLEDKIDMLWSFIKS---HLKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred ----------------------------heE--------EEEehhhHHHHHHHHHHh---ccccceEEEEehhhHHHHHH
Confidence 000 112234455555555554 34567888877766666665
Q ss_pred HHHH-hc-CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhc
Q psy5647 532 RLSK-LR-GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR 609 (755)
Q Consensus 532 ~~L~-~~-g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R 609 (755)
+.+. .+ |++...++|.|+++.|.++..+|..... ++|.+|++++.||+++..|.||-+|.|-+...|++|.||.-|
T Consensus 331 e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~--~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 331 EAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA--VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc--eEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 5544 33 9999999999999999999999986444 689999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q psy5647 610 DGQKKPCFVYRFLSTGSIEEKMMQRQAHK 638 (755)
Q Consensus 610 ~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K 638 (755)
.+..-...+| + .-+=||++..+...|
T Consensus 409 ~~~~G~sll~--L-~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 409 YKERGESLLM--L-TPSEEEAMLKKLQKK 434 (758)
T ss_pred ccCCCceEEE--E-cchhHHHHHHHHHHc
Confidence 9887666543 2 334457777766665
No 82
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.67 E-value=3.1e-15 Score=175.53 Aligned_cols=158 Identities=22% Similarity=0.154 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
+|+|+|+++|.-.+ ..+.++|++-.+|+|||+.|...+...+..+ ..+++.|||. +|..+=.+||
T Consensus 31 el~~~qq~av~~~~--------~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------~~k~vYivPlkALa~Ek~~~~ 96 (766)
T COG1204 31 ELFNPQQEAVEKGL--------LSDENVLISAPTGSGKTLIALLAILSTLLEG------GGKVVYIVPLKALAEEKYEEF 96 (766)
T ss_pred HhhHHHHHHhhccc--------cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc------CCcEEEEeChHHHHHHHHHHh
Confidence 89999999997543 2378999999999999999999887777665 1458999999 8888889999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh--hcCCccEEEEeCCcccCCCc---
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL--HKNEVGLVLCDEGHRLKNCE--- 299 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l--~~~~~~lvIiDEaH~lKn~~--- 299 (755)
.+|-...+++....|...... ..+ ...+|+|+|||.+-.....- ....+++||+||+|.+....
T Consensus 97 ~~~~~~GirV~~~TgD~~~~~-~~l----------~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 97 SRLEELGIRVGISTGDYDLDD-ERL----------ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred hhHHhcCCEEEEecCCcccch-hhh----------ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc
Confidence 966665677777766543221 111 34689999999986432211 22368999999999997651
Q ss_pred ---cHHHHHHHccccccEEEeecCCCcCCHHHHH
Q psy5647 300 ---SQTYQALMGLKAKRRVLLSGTPIQNDLLEYF 330 (755)
Q Consensus 300 ---s~~~~al~~l~~~~rllLTGTPiqN~l~El~ 330 (755)
+-.++....-..-+.++||||- .|..|+-
T Consensus 166 ~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA 197 (766)
T COG1204 166 VLESIVARMRRLNELIRIVGLSATL--PNAEEVA 197 (766)
T ss_pred eehhHHHHHHhhCcceEEEEEeeec--CCHHHHH
Confidence 3333333322335889999994 3344443
No 83
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=171.99 Aligned_cols=330 Identities=15% Similarity=0.171 Sum_probs=217.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|++||.++++.++ .++..|+.-.||+|||...+..+...+.+.+. .++|+|-|. .|.....+.
T Consensus 69 ~~lY~HQ~~A~~~~~---------~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~-----a~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 69 ERLYSHQVDALRLIR---------EGRNVVVTTGTGSGKTESFLLPILDHLLRDPS-----ARALLLYPTNALANDQAER 134 (851)
T ss_pred ccccHHHHHHHHHHH---------CCCCEEEECCCCCchhHHHHHHHHHHHhhCcC-----ccEEEEechhhhHhhHHHH
Confidence 349999999999884 46899999999999999988876655555543 368999999 666789999
Q ss_pred HHHHhCC---CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh-----h-hhhcCCccEEEEeCCcc
Q psy5647 224 ITKWLGG---RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA-----S-VLHKNEVGLVLCDEGHR 294 (755)
Q Consensus 224 ~~kw~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~-----~-~l~~~~~~lvIiDEaH~ 294 (755)
|.+|... .+.+..++|..+....+.+.. ...+|++|+|+|+.... . ......+.+|||||+|-
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~--------~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIR--------NPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHh--------CCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 9999753 467777888776655543221 45689999999986521 1 11112488999999999
Q ss_pred cCCC-ccHHHHHHHccc--------cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCH
Q psy5647 295 LKNC-ESQTYQALMGLK--------AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365 (755)
Q Consensus 295 lKn~-~s~~~~al~~l~--------~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~ 365 (755)
.+.. .|...-.++.|. ....|+.|||- ++..+|.+.+..-.
T Consensus 207 YrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~---------- 256 (851)
T COG1205 207 YRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRD---------- 256 (851)
T ss_pred ccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCc----------
Confidence 8764 466665555552 34558889983 23333333322100
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhcchhH-hhc-cCCCceEEEEEEcC-CHHHHHHHHHHHhhHHHHHHHcCCCccccccc
Q psy5647 366 AERTKANERLEQLIGIVNRCLIRRTSAL-LSK-YLPVKTEQVVCIKM-TDLQKELYTNLIKSDAVRRTMKGGENTKLGMT 442 (755)
Q Consensus 366 ~~~~~~~~~~~~L~~~l~~~~lRRt~~~-v~~-~LP~k~e~vv~~~l-s~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~ 442 (755)
... +.. .-|.-..+++.-.+ ....... +
T Consensus 257 -------------------------f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~---~--------------------- 287 (851)
T COG1205 257 -------------------------FEVPVDEDGSPRGLRYFVRREPPIRELAES---I--------------------- 287 (851)
T ss_pred -------------------------ceeeccCCCCCCCceEEEEeCCcchhhhhh---c---------------------
Confidence 000 000 01211112221111 1000000 0
Q ss_pred HHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEe
Q psy5647 443 ALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSN 522 (755)
Q Consensus 443 ~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~ 522 (755)
.-.+...+..+..... ..+-++++|+.
T Consensus 288 ----------------------------------------------------r~s~~~~~~~~~~~~~-~~~~~tL~F~~ 314 (851)
T COG1205 288 ----------------------------------------------------RRSALAELATLAALLV-RNGIQTLVFFR 314 (851)
T ss_pred ----------------------------------------------------ccchHHHHHHHHHHHH-HcCceEEEEEe
Confidence 0011111222222222 34789999999
Q ss_pred chhHHHHHH----HHHHhcC----CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC
Q psy5647 523 YTQTLDLFE----RLSKLRG----YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD 594 (755)
Q Consensus 523 ~~~~ld~l~----~~L~~~g----~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~ 594 (755)
+...+..+. ..+...+ ..+..+.|++...+|.++...|+.+... ++++|.|.-.|+++-+.+.||..--|
T Consensus 315 sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 315 SRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--GVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred hhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc--EEecchhhhhceeehhhhhHhhcCCC
Confidence 999988886 3344445 5688899999999999999999986665 78999999999999999999999888
Q ss_pred C-CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHH
Q psy5647 595 W-NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMM 632 (755)
Q Consensus 595 W-Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~ 632 (755)
- .-....|+.||++|.||.-. ++-..-.+-++....
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~ 429 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYL 429 (851)
T ss_pred CchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhh
Confidence 8 77899999999999995433 222333556666554
No 84
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.66 E-value=4.7e-16 Score=144.56 Aligned_cols=120 Identities=22% Similarity=0.367 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
.|...+..++..... .++++|||+++...++.+.+.|...+..+..++|+++..+|..+++.|+++. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChh
Confidence 677777777776543 5789999999999999999999999999999999999999999999999855 3578899999
Q ss_pred ccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEE
Q psy5647 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 577 g~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
|+|+|++++++||+++++|++..+.|++||++|.||+..|++|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.65 E-value=9e-14 Score=163.49 Aligned_cols=153 Identities=21% Similarity=0.296 Sum_probs=103.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|.++|.+++..+.+.+ ....++|...+|+|||...+.++...+..+ +.+||++|. .|..||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~------~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-------~~vLvLvPt~~L~~Q~~~~ 209 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA------GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-------KQALVLVPEIALTPQMLAR 209 (679)
T ss_pred CCCCHHHHHHHHHHHhcc------CCCcEEEECCCCChHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHHHH
Confidence 479999999999886521 245689999999999999988887777654 358999999 788999999
Q ss_pred HHHHhCCCceEEEecCCC-HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCC--Ccc
Q psy5647 224 ITKWLGGRVAALPIDGGS-KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN--CES 300 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn--~~s 300 (755)
|.++++. .+..++++. ..+... .|.... ....+|+|.|...+. +.-.++++||+||+|...- ...
T Consensus 210 l~~~fg~--~v~~~~s~~s~~~r~~---~~~~~~--~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~ 277 (679)
T PRK05580 210 FRARFGA--PVAVLHSGLSDGERLD---EWRKAK--RGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEG 277 (679)
T ss_pred HHHHhCC--CEEEEECCCCHHHHHH---HHHHHH--cCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcC
Confidence 9998864 444555543 333222 222211 123579999987653 2224678999999997632 222
Q ss_pred HHH--HH---H-HccccccEEEeecCCC
Q psy5647 301 QTY--QA---L-MGLKAKRRVLLSGTPI 322 (755)
Q Consensus 301 ~~~--~a---l-~~l~~~~rllLTGTPi 322 (755)
-.+ +. + ........+++||||.
T Consensus 278 p~y~~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 278 PRYHARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred CCCcHHHHHHHHhhccCCCEEEEcCCCC
Confidence 111 11 1 1224456799999995
No 86
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.64 E-value=7.3e-15 Score=158.41 Aligned_cols=322 Identities=17% Similarity=0.188 Sum_probs=206.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHH-HHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC-ITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCN 222 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqa-Iall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~ 222 (755)
..|.|-|.-+|..- + -.+.+-++...+++|||+.+ +|-+..++..+ ++.|.++|...+ +|=.+
T Consensus 215 ~eLlPVQ~laVe~G------L--LeG~nllVVSaTasGKTLIgElAGi~~~l~~g-------~KmlfLvPLVALANQKy~ 279 (830)
T COG1202 215 EELLPVQVLAVEAG------L--LEGENLLVVSATASGKTLIGELAGIPRLLSGG-------KKMLFLVPLVALANQKYE 279 (830)
T ss_pred ceecchhhhhhhhc------c--ccCCceEEEeccCCCcchHHHhhCcHHHHhCC-------CeEEEEehhHHhhcchHH
Confidence 46999999998752 1 45778899999999999976 34455555544 568999999555 55566
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh-hhcCCccEEEEeCCcccCCCc-
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV-LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~-l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+|..-+.. .+.+-.--|.+.-...... -.....+..||++-|||-+--.... -.-.+++.|||||.|.+....
T Consensus 280 dF~~rYs~LglkvairVG~srIk~~~~p----v~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deER 355 (830)
T COG1202 280 DFKERYSKLGLKVAIRVGMSRIKTREEP----VVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEER 355 (830)
T ss_pred HHHHHhhcccceEEEEechhhhcccCCc----cccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhc
Confidence 78776643 2332111222211110000 0012235679999999987533322 122468899999999997632
Q ss_pred -cHHH---HHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 300 -SQTY---QALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 300 -s~~~---~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
...- ..++.+ .....|.||||- .|+.|+..-+..= +
T Consensus 356 G~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~-----------------l-------------------- 396 (830)
T COG1202 356 GPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK-----------------L-------------------- 396 (830)
T ss_pred ccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe-----------------e--------------------
Confidence 2222 223333 446779999995 4555554433210 0
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCC-ceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPV-KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~-k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
.+-..-|. ...++++|.=...-..+...+.++..
T Consensus 397 ------------------V~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~--------------------------- 431 (830)
T COG1202 397 ------------------VLYDERPVPLERHLVFARNESEKWDIIARLVKREF--------------------------- 431 (830)
T ss_pred ------------------EeecCCCCChhHeeeeecCchHHHHHHHHHHHHHH---------------------------
Confidence 00011232 23345555433222222222211110
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
..+.|. .-...+|||++++.-.+.|..+
T Consensus 432 --------------------------------------~~~ssk--------------g~rGQtIVFT~SRrr~h~lA~~ 459 (830)
T COG1202 432 --------------------------------------STESSK--------------GYRGQTIVFTYSRRRCHELADA 459 (830)
T ss_pred --------------------------------------hhhhcc--------------CcCCceEEEecchhhHHHHHHH
Confidence 000000 1135889999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE----eCCCC-CCCcHHHHhHhhh
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM----FDPDW-NPANDDQAMARVW 608 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~----~D~~W-Np~~~~Qa~gR~~ 608 (755)
|..+|++..-++++++..+|+.+-..|.+..-. .+++|.|.|.|++++ |+.||| +.-.| +|..+.|..||++
T Consensus 460 L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAG 536 (830)
T COG1202 460 LTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--AVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAG 536 (830)
T ss_pred hhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--eEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccC
Confidence 999999999999999999999999999976555 678999999999999 677765 45555 9999999999999
Q ss_pred ccCCCCcEEEEEEeeC
Q psy5647 609 RDGQKKPCFVYRFLST 624 (755)
Q Consensus 609 R~GQ~k~V~Vyrlv~~ 624 (755)
|.|-...-.||-++-.
T Consensus 537 Rp~yHdrGkVyllvep 552 (830)
T COG1202 537 RPDYHDRGKVYLLVEP 552 (830)
T ss_pred CCCcccCceEEEEecC
Confidence 9998776677877754
No 87
>KOG0339|consensus
Probab=99.63 E-value=4.4e-14 Score=150.29 Aligned_cols=126 Identities=19% Similarity=0.320 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
.|+.+|.+-|-... ...+||||..-....+-|...|+..|+.+..++|++.+.+|.+.+.+|...... +|+.|++.
T Consensus 453 ~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~--VlvatDva 528 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP--VLVATDVA 528 (731)
T ss_pred HHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc--eEEEeeHh
Confidence 45555544444432 346999999999999999999999999999999999999999999999986555 78899999
Q ss_pred ccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHH
Q psy5647 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628 (755)
Q Consensus 577 g~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiE 628 (755)
..|+++....+||+||.--....+.|++||.+|-|-+ -..|.|+|....+
T Consensus 529 argldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 529 ARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred hcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9999999999999999999999999999999999987 4578899876555
No 88
>KOG0338|consensus
Probab=99.62 E-value=1.7e-14 Score=153.67 Aligned_cols=113 Identities=18% Similarity=0.335 Sum_probs=99.7
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCC
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP 593 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~ 593 (755)
.++++||.+.....+.+.-+|-..|+++..++|+.++.+|...++.|.+..-+ +|++|++++.||++.+..+||+|+.
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--vLiaTDvAsRGLDI~gV~tVINy~m 503 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--VLIATDVASRGLDIEGVQTVINYAM 503 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC--EEEEechhhccCCccceeEEEeccC
Confidence 57999999999999999999999999999999999999999999999986665 8899999999999999999999999
Q ss_pred CCCCCcHHHHhHhhhccCCC-CcEEEEEEeeCCCHHHHHHH
Q psy5647 594 DWNPANDDQAMARVWRDGQK-KPCFVYRFLSTGSIEEKMMQ 633 (755)
Q Consensus 594 ~WNp~~~~Qa~gR~~R~GQ~-k~V~Vyrlv~~gTiEEkI~~ 633 (755)
|-.-..|.+|.||.-|-|.. +.| .|+..+ |-+|+.
T Consensus 504 P~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK 539 (691)
T KOG0338|consen 504 PKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLK 539 (691)
T ss_pred chhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHH
Confidence 99999999999999998865 444 355555 444443
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.60 E-value=2.6e-13 Score=154.08 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=74.8
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCCCHHHH--HHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC---CC--
Q psy5647 527 LDLFERLSKLR--GYKYVRLDGSMTIKKR--AKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW---NP-- 597 (755)
Q Consensus 527 ld~l~~~L~~~--g~~~~~ldG~~~~~~R--~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W---Np-- 597 (755)
.+.+++.|+.. +.++.++|+.++..++ .++++.|.++... +|++|...+.|+|+...+.|+++|.|- .|
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD--ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC--EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 45666666665 7899999999876655 8999999986554 779999999999999999998777663 23
Q ss_pred -------CcHHHHhHhhhccCCCCcEEEEEEeeC
Q psy5647 598 -------ANDDQAMARVWRDGQKKPCFVYRFLST 624 (755)
Q Consensus 598 -------~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~ 624 (755)
+.+.|+.||++|.+....|.|..+-..
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 468999999999887776765544333
No 90
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.60 E-value=7.1e-14 Score=165.79 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCEEEEEEechhHHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKL---RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM 590 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~---~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~ 590 (755)
+.++|||++....++.+...|+. .++.+..++|+++.++|.++++.|.++. +-+|+||..+..||++.+++.||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhcccccCceEEEE
Confidence 46899999999999999988887 4789999999999999999999997643 347899999999999999999999
Q ss_pred eCCC----CCCCc--------------HHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 591 FDPD----WNPAN--------------DDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 591 ~D~~----WNp~~--------------~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
++.+ +||.. +.||.||++|. ++=..|||+++.
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 8875 45554 78999999996 456678998764
No 91
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.59 E-value=1.3e-13 Score=169.38 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=92.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...+.|+|+.++..++ .+...++..++|+|||.-++.++..+...+ .++|||+|+ .|+.|+.+
T Consensus 76 g~~p~~iQ~~~i~~il---------~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g-------~~vLIL~PTreLa~Qi~~ 139 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVL---------RGDSFAIIAPTGVGKTTFGLAMSLFLAKKG-------KRCYIILPTTLLVIQVAE 139 (1171)
T ss_pred CCCCcHHHHHHHHHHh---------CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCHHHHHHHHHH
Confidence 3478899999988763 456788999999999986655544443332 358999999 77899999
Q ss_pred HHHHHhCC-CceE---EEecCCCHHHH-HHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCC
Q psy5647 223 EITKWLGG-RVAA---LPIDGGSKAEI-DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 223 E~~kw~~~-~~~~---~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn 297 (755)
++.++... .+.. ..++|+..... ...+..+. . ...+|+|+|+..+..+...+.. .++++|+||||++-.
T Consensus 140 ~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~-~----~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 140 KISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIE-N----GDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHh-c----CCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 99998753 2222 23455543322 22222221 1 2468999999999877766654 899999999999854
No 92
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.59 E-value=1.5e-14 Score=143.61 Aligned_cols=159 Identities=28% Similarity=0.357 Sum_probs=113.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...++|||.+++..+.. ...++++..++|+|||..++.++...+..++ .+++||++|. .+..+|.+
T Consensus 6 ~~~~~~~Q~~~~~~~~~--------~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----~~~~l~~~p~~~~~~~~~~ 72 (201)
T smart00487 6 FEPLRPYQKEAIEALLS--------GLRDVILAAPTGSGKTLAALLPALEALKRGK-----GKRVLVLVPTRELAEQWAE 72 (201)
T ss_pred CCCCCHHHHHHHHHHHc--------CCCcEEEECCCCCchhHHHHHHHHHHhcccC-----CCcEEEEeCCHHHHHHHHH
Confidence 35789999999998753 1168999999999999988888877776543 3568999996 78899999
Q ss_pred HHHHHhCCC--ceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCC-
Q psy5647 223 EITKWLGGR--VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKN- 297 (755)
Q Consensus 223 E~~kw~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn- 297 (755)
++.++++.. .....+.+...... +..+.. ...+++++||+.+...... +....++++|+||+|.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 144 (201)
T smart00487 73 ELKKLGPSLGLKVVGLYGGDSKREQ---LRKLES-----GKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG 144 (201)
T ss_pred HHHHHhccCCeEEEEEeCCcchHHH---HHHHhc-----CCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC
Confidence 999988652 23333333332221 122111 1237999999999876655 4455789999999999986
Q ss_pred CccHHHHHH-Hcc-ccccEEEeecCCCc
Q psy5647 298 CESQTYQAL-MGL-KAKRRVLLSGTPIQ 323 (755)
Q Consensus 298 ~~s~~~~al-~~l-~~~~rllLTGTPiq 323 (755)
........+ ..+ ...+++++||||..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCch
Confidence 444444444 334 57889999999953
No 93
>PRK14701 reverse gyrase; Provisional
Probab=99.58 E-value=4.7e-13 Score=167.69 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
+..++|.|.+++..++ .++..++..++|+|||+..+.++..+...+ .++|||+|+ .|+.|..+
T Consensus 77 G~~pt~iQ~~~i~~il---------~G~d~li~APTGsGKTl~~~~~al~~~~~g-------~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 77 GFEFWSIQKTWAKRIL---------RGKSFSIVAPTGMGKSTFGAFIALFLALKG-------KKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEEEcCCCCHHHHHHHHHHHHHhcC-------CeEEEEECHHHHHHHHHH
Confidence 3368999999998774 356789999999999993332222222222 358999999 78889999
Q ss_pred HHHHHhCC---CceEEEecCCCHHHHH-HHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC
Q psy5647 223 EITKWLGG---RVAALPIDGGSKAEID-NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 223 E~~kw~~~---~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK 296 (755)
.+.++... .+.+..++|+...... ..+..+ . ....+|+|+|.+.+..+...+....++++|+||||++-
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l-~----~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERI-E----NGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHH-h----cCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 99887642 3555666666443322 222222 1 12468999999988766554444679999999999984
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.56 E-value=7.7e-13 Score=157.08 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcC---CcEEEEcCCCCHHHH----HHHHHHHcc-CCC-ceEEEeecCCcccccccC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRG---YKYVRLDGSMTIKKR----AKVVETFNK-TSN-EFIFMLSSKAGGCGLNLI 583 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g---~~~~~ldG~~~~~~R----~~~v~~Fn~-~~~-~~v~LlSt~agg~GLNL~ 583 (755)
.+.+++||+|.......+.+.|+..+ +++..++|.++..+| .++++.|.. +.. ...+|++|.+...|||+.
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId 638 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD 638 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC
Confidence 47899999999999999999888765 679999999999988 567889943 322 135789999999999994
Q ss_pred CCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 584 GANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 584 ~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
++.+|....| ...++||+||+||.|.+
T Consensus 639 -~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 639 -FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 7888876554 46899999999999874
No 95
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.56 E-value=5e-15 Score=124.99 Aligned_cols=78 Identities=26% Similarity=0.539 Sum_probs=73.4
Q ss_pred HHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccC
Q psy5647 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611 (755)
Q Consensus 532 ~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~G 611 (755)
++|+..|+++..++|+++.++|+++++.|+.+... +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46889999999999999999999999999986663 7888999999999999999999999999999999999999988
No 96
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.55 E-value=2.6e-13 Score=161.39 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=91.2
Q ss_pred CCEEEEEEechhHHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKL---RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM 590 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~---~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~ 590 (755)
+..+|||++....++.+.+.|.. .++.+..++|+++.++|.++++.|.++ .+-+|++|..+..||++.+++.||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G--~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG--RRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC--CeEEEEecchHHhcccccCceEEEE
Confidence 57899999999999999999986 578899999999999999999988754 3457899999999999999999999
Q ss_pred eCCC----CCC--------------CcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 591 FDPD----WNP--------------ANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 591 ~D~~----WNp--------------~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
++.+ ++| +.+.||.||++|. .+=..|||+++...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 333 3588999999886 46678999886543
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.55 E-value=4e-12 Score=149.94 Aligned_cols=315 Identities=16% Similarity=0.252 Sum_probs=213.4
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh-HH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN-WC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n-W~ 221 (755)
+...--|-|..+++.+.+-.... ..--=+++-++|-|||=.|+-.+......| +-+.|+||++++.+ -.
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~---kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-------KQVAvLVPTTlLA~QHy 660 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESG---KPMDRLICGDVGFGKTEVAMRAAFKAVMDG-------KQVAVLVPTTLLAQQHY 660 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccC---CcchheeecCcCCcHHHHHHHHHHHHhcCC-------CeEEEEcccHHhHHHHH
Confidence 34456688999999887755432 223348999999999999987776665555 34899999988854 44
Q ss_pred HHHHHHh-CCCceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 222 NEITKWL-GGRVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 222 ~E~~kw~-~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.|.+-+ +-.+.+-.++-- +.++....++.... ...||+|-|+..+..+..+ .+.++|||||=||+.-
T Consensus 661 ~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~-----G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGV-- 730 (1139)
T COG1197 661 ETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE-----GKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGV-- 730 (1139)
T ss_pred HHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc-----CCccEEEechHhhCCCcEE---ecCCeEEEechhhcCc--
Confidence 4565443 335555555443 23333333333322 4579999999998876644 3568999999999854
Q ss_pred cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
+.-..+++++ .-..+-||||||.-.|. |.+. | +.+|
T Consensus 731 -k~KEkLK~Lr~~VDvLTLSATPIPRTL~-----Msm~-----G--------------------------------iRdl 767 (1139)
T COG1197 731 -KHKEKLKELRANVDVLTLSATPIPRTLN-----MSLS-----G--------------------------------IRDL 767 (1139)
T ss_pred -cHHHHHHHHhccCcEEEeeCCCCcchHH-----HHHh-----c--------------------------------chhh
Confidence 4445566664 45789999999987753 1110 0 0011
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
+.+ .-||.....|.--..+..-.+.+
T Consensus 768 -------------SvI--~TPP~~R~pV~T~V~~~d~~~ir--------------------------------------- 793 (1139)
T COG1197 768 -------------SVI--ATPPEDRLPVKTFVSEYDDLLIR--------------------------------------- 793 (1139)
T ss_pred -------------hhc--cCCCCCCcceEEEEecCChHHHH---------------------------------------
Confidence 111 14555444443222221111110
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR- 537 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~- 537 (755)
+.+++++ ..|.+|-...|..+.+..+...|+..
T Consensus 794 --------------------------------------------eAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV 827 (1139)
T COG1197 794 --------------------------------------------EAILREL--LRGGQVFYVHNRVESIEKKAERLRELV 827 (1139)
T ss_pred --------------------------------------------HHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC
Confidence 1223333 24778888888899888888888775
Q ss_pred -CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC-CCCCcHHHHhHhhhccCCCCc
Q psy5647 538 -GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD-WNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 538 -g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~-WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
..++...+|.|+..+-.+++..|.++.-+ +|+||.....||+++.||++|+-+.+ +--+..-|-.||++|-. +.
T Consensus 828 PEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~ 903 (1139)
T COG1197 828 PEARIAVAHGQMRERELEEVMLDFYNGEYD--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQ 903 (1139)
T ss_pred CceEEEEeecCCCHHHHHHHHHHHHcCCCC--EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ce
Confidence 56788999999999999999999976555 78899999999999999999998877 56788899999999954 45
Q ss_pred EEEEEEeeC
Q psy5647 616 CFVYRFLST 624 (755)
Q Consensus 616 V~Vyrlv~~ 624 (755)
-+-|-++..
T Consensus 904 AYAYfl~p~ 912 (1139)
T COG1197 904 AYAYFLYPP 912 (1139)
T ss_pred EEEEEeecC
Confidence 577777764
No 98
>KOG4284|consensus
Probab=99.54 E-value=6.3e-14 Score=152.73 Aligned_cols=310 Identities=18% Similarity=0.193 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCNEITKW 227 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~~E~~kw 227 (755)
|-|..+|-..+ .+-..|+-.--|+|||+.-..++..-+..... . --.+||+|+- +--|-.+-|.+.
T Consensus 50 kiQaaAIP~~~---------~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~-~---~q~~Iv~PTREiaVQI~~tv~~v 116 (980)
T KOG4284|consen 50 KIQAAAIPAIF---------SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSS-H---IQKVIVTPTREIAVQIKETVRKV 116 (980)
T ss_pred chhhhhhhhhh---------cccceEEEecCCCCceEEEEeeeehhcCcccC-c---ceeEEEecchhhhhHHHHHHHHh
Confidence 56777775442 23356888889999998755544433322211 1 2369999994 445666777777
Q ss_pred hCC--CceEEEecCCCHHHHHH-HHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCCCcc--
Q psy5647 228 LGG--RVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKNCES-- 300 (755)
Q Consensus 228 ~~~--~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn~~s-- 300 (755)
++. ...+-++-||+.-..+. .++ ...|+|-|...+.... ..+.....+++|+|||..|-...|
T Consensus 117 ~~sf~g~~csvfIGGT~~~~d~~rlk----------~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq 186 (980)
T KOG4284|consen 117 APSFTGARCSVFIGGTAHKLDLIRLK----------QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQ 186 (980)
T ss_pred cccccCcceEEEecCchhhhhhhhhh----------hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHH
Confidence 662 45666666665443221 121 2359999999887654 455666789999999999866544
Q ss_pred -HHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 301 -QTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 301 -~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.....+.++. .+..++.|||=-+| |.++ |
T Consensus 187 ~~In~ii~slP~~rQv~a~SATYp~n-Ldn~------------------------------------------------L 217 (980)
T KOG4284|consen 187 DDINIIINSLPQIRQVAAFSATYPRN-LDNL------------------------------------------------L 217 (980)
T ss_pred HHHHHHHHhcchhheeeEEeccCchh-HHHH------------------------------------------------H
Confidence 3344556664 45678889994332 2221 1
Q ss_pred HHhHh-HHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 379 IGIVN-RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 379 ~~~l~-~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
.+.+. +.++|-...++. -+.-|...++.|...
T Consensus 218 sk~mrdp~lVr~n~~d~~-L~GikQyv~~~~s~n---------------------------------------------- 250 (980)
T KOG4284|consen 218 SKFMRDPALVRFNADDVQ-LFGIKQYVVAKCSPN---------------------------------------------- 250 (980)
T ss_pred HHHhcccceeecccCCce-eechhheeeeccCCc----------------------------------------------
Confidence 11121 111221111111 112222222222111
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
....+.--|++.|.+++..+. =...||||+...-.+-+..+|...
T Consensus 251 --------------------------------nsveemrlklq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~ss 295 (980)
T KOG4284|consen 251 --------------------------------NSVEEMRLKLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKSS 295 (980)
T ss_pred --------------------------------chHHHHHHHHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhcc
Confidence 111223345666666666553 357799999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
|+++-.|.|.|+.++|.-+++.+++- .. -+|+||+..+.||+-..+|-||.+|++-+-..|..||||++|.|..-
T Consensus 296 G~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~-rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 296 GLDVTFISGAMSQKDRLLAVDQLRAF-RV-RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred CCCeEEeccccchhHHHHHHHHhhhc-eE-EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 99999999999999999999998752 22 47899999999999999999999999999999999999999999753
No 99
>KOG0326|consensus
Probab=99.54 E-value=7.2e-15 Score=148.22 Aligned_cols=123 Identities=17% Similarity=0.277 Sum_probs=104.7
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
+.+.|+..|..|+..+.. ...|||||+++..++++....+.||+...++..|..+.|..+...|.++. ++ -|++|
T Consensus 305 ~e~qKvhCLntLfskLqI---NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~-cr-nLVct 379 (459)
T KOG0326|consen 305 EERQKVHCLNTLFSKLQI---NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK-CR-NLVCT 379 (459)
T ss_pred chhhhhhhHHHHHHHhcc---cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc-cc-eeeeh
Confidence 345667777777777653 36799999999999999999999999999999999999999999999744 33 57889
Q ss_pred CCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEee
Q psy5647 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623 (755)
Q Consensus 574 ~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~ 623 (755)
+....||++++.|.||.||.+-|+..|..++||.+|.|-.- ....|++
T Consensus 380 DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 380 DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred hhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 99999999999999999999999999999999999999642 2234554
No 100
>KOG0336|consensus
Probab=99.53 E-value=4e-13 Score=139.64 Aligned_cols=303 Identities=18% Similarity=0.295 Sum_probs=203.3
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHH--HH---HHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHHhCCCceEEE-ecCC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITL--MW---TLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGGRVAALP-IDGG 240 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIal--l~---~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw~~~~~~~~~-~~~~ 240 (755)
..+.-+|-...+|.|||+.-+.- +. ...+.+....| .+|++.|. -|..|-+-|..++--.....+. +.|+
T Consensus 255 LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p---~~lvl~ptreLalqie~e~~kysyng~ksvc~yggg 331 (629)
T KOG0336|consen 255 LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGP---GVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGG 331 (629)
T ss_pred ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCC---ceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCC
Confidence 34667888999999999876642 21 11122222233 47999998 4556667777777544444444 4455
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCC--CccHHHHHHHccccccEEE
Q psy5647 241 SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKN--CESQTYQALMGLKAKRRVL 316 (755)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn--~~s~~~~al~~l~~~~rll 316 (755)
++.+..+.++ .+.+++|.+...|.... ..+.-..+.++|+|||.++-. ...+.-+.+..++..+-..
T Consensus 332 nR~eqie~lk---------rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv 402 (629)
T KOG0336|consen 332 NRNEQIEDLK---------RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV 402 (629)
T ss_pred CchhHHHHHh---------cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee
Confidence 5555444443 24579999999886532 334445678999999999864 4578888888887776655
Q ss_pred ee-cCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhh
Q psy5647 317 LS-GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLS 395 (755)
Q Consensus 317 LT-GTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~ 395 (755)
|| || .... +||....
T Consensus 403 mTSAT-WP~~-------------------------------------------------------------VrrLa~s-- 418 (629)
T KOG0336|consen 403 MTSAT-WPEG-------------------------------------------------------------VRRLAQS-- 418 (629)
T ss_pred eeccc-CchH-------------------------------------------------------------HHHHHHH--
Confidence 54 44 1111 1111000
Q ss_pred ccCCCceEEEEEE---cCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchh
Q psy5647 396 KYLPVKTEQVVCI---KMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFE 472 (755)
Q Consensus 396 ~~LP~k~e~vv~~---~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~ 472 (755)
|+ |...++++ .|... +.-
T Consensus 419 -Y~--Kep~~v~vGsLdL~a~-----------------------------------------~sV--------------- 439 (629)
T KOG0336|consen 419 -YL--KEPMIVYVGSLDLVAV-----------------------------------------KSV--------------- 439 (629)
T ss_pred -hh--hCceEEEecccceeee-----------------------------------------eee---------------
Confidence 01 11111211 11000 000
Q ss_pred hhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHH
Q psy5647 473 NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKK 552 (755)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~ 552 (755)
.-.-+....+.|+..+..+++.+ ..++|+|||+....+.|-|..-|...|+....++|.-.+.+
T Consensus 440 --------------kQ~i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~D 503 (629)
T KOG0336|consen 440 --------------KQNIIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSD 503 (629)
T ss_pred --------------eeeEEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhh
Confidence 00011233456666666666665 35799999999999999999888899999999999999999
Q ss_pred HHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 553 RAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 553 R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
|...++.|..+.- -+|++|+..+.||++....+|+.||.|-|-..|..++||.+|-|.+-.- ..|++.+
T Consensus 504 rE~al~~~ksG~v--rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 504 REMALEDFKSGEV--RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred HHHHHHhhhcCce--EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 9999999986443 4789999999999999999999999999999999999999999976532 2345543
No 101
>KOG0341|consensus
Probab=99.53 E-value=8.9e-14 Score=143.47 Aligned_cols=171 Identities=19% Similarity=0.291 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
-.|+..|.+-|+ .+..+|+||+....-.|.|.++|-..|+..+.|+|+...++|...|+.|+.+..+ +|+.|++
T Consensus 407 EaKiVylLeCLQ----KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLVATDV 480 (610)
T KOG0341|consen 407 EAKIVYLLECLQ----KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLVATDV 480 (610)
T ss_pred hhhhhhHHHHhc----cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEEEecc
Confidence 445554444443 3467999999999999999999999999999999999999999999999987776 7899999
Q ss_pred cccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhcc
Q psy5647 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH 655 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~ 655 (755)
++-||++++..+||+||.|-.-.+|..|+||.+|-|.+-= ...|+-+++-|.-+++. |.-|.++--.-.
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvLlDL---K~LL~EakQ~vP------ 549 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVLLDL---KHLLQEAKQEVP------ 549 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHHHHH---HHHHHHhhccCC------
Confidence 9999999999999999999999999999999999997642 23455565554444332 222222211100
Q ss_pred CCHHHHHhccccC-CCCccccccccccccccC
Q psy5647 656 FSMSELRSLFQLE-ENTISDTHDKIKCSRCVN 686 (755)
Q Consensus 656 ~s~~el~~Lf~~~-~~~~~~t~d~~~~~~~~~ 686 (755)
.=|.+|-.-. +++..++.+.-.|..|.+
T Consensus 550 ---~~L~~L~~~~E~~~~a~~~~~kGCayCgG 578 (610)
T KOG0341|consen 550 ---PVLAELAGPMEEETIADAGGEKGCAYCGG 578 (610)
T ss_pred ---HHHHHhCCCccccccccCCCccccccccC
Confidence 1122232222 235567777788988865
No 102
>KOG0347|consensus
Probab=99.53 E-value=2.3e-13 Score=146.43 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=108.6
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCC
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP 593 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~ 593 (755)
..+.+||||..+....|.-+|...+++...++.+|.+++|.+-+++|.+..+. +|++|++++.||++++..|||+|..
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeec
Confidence 46899999999999999999999999999999999999999999999986655 8899999999999999999999999
Q ss_pred CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC---------------------CHHHHHHHHHHHHHHhHhhhhC
Q psy5647 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTG---------------------SIEEKMMQRQAHKKALSSCVVD 647 (755)
Q Consensus 594 ~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g---------------------TiEEkI~~r~~~K~~l~~~vv~ 647 (755)
|-.-..|+.|-||.-|-+.. .|.|- |+..+ -|++.|+......-.|+..+.+
T Consensus 541 PrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~ 613 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDK 613 (731)
T ss_pred CCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997642 33332 22211 2466777776666666666654
No 103
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2e-12 Score=150.79 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=104.8
Q ss_pred hHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 492 ~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
......|...+.+-+..+. ..|..|||||++....+.+..+|...|+++..|+|....++|..+.+.|+.+. +++
T Consensus 423 ~~t~~~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtI 497 (896)
T PRK13104 423 YLTQADKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTI 497 (896)
T ss_pred EcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEE
Confidence 3445667776666666555 46899999999999999999999999999999999999999999999999763 789
Q ss_pred ecCCcccccccC--------------------------------------CCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 572 SSKAGGCGLNLI--------------------------------------GANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 572 St~agg~GLNL~--------------------------------------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
+|..+|.|+++. |.=+||.-..+-|-..|.|..||++|.|..
T Consensus 498 ATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDP 577 (896)
T PRK13104 498 ATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDP 577 (896)
T ss_pred eccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCC
Confidence 999999999974 345788889999999999999999999998
Q ss_pred CcEEEE
Q psy5647 614 KPCFVY 619 (755)
Q Consensus 614 k~V~Vy 619 (755)
-....|
T Consensus 578 Gss~f~ 583 (896)
T PRK13104 578 GSSRFY 583 (896)
T ss_pred CceEEE
Confidence 655444
No 104
>KOG0332|consensus
Probab=99.52 E-value=7.2e-13 Score=136.72 Aligned_cols=122 Identities=14% Similarity=0.240 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
.|+.+|..+-..+. =...||||....+...|...+...|+.+..++|.+...+|.+++++|+.+... +|++|.+.
T Consensus 316 ~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitTnV~ 390 (477)
T KOG0332|consen 316 DKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITTNVC 390 (477)
T ss_pred hHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce--EEEEechh
Confidence 45555555443332 24679999999999999999999999999999999999999999999986655 78999999
Q ss_pred ccccccCCCCEEEEeCCCC------CCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 577 GCGLNLIGANRLVMFDPDW------NPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 577 g~GLNL~~a~~vI~~D~~W------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
+.||+....+-||.||.|- .+..|.+|+||.+|.|.+- +. +.|+-.+
T Consensus 391 ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~a-~n~v~~~ 443 (477)
T KOG0332|consen 391 ARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-LA-INLVDDK 443 (477)
T ss_pred hcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-eE-EEeeccc
Confidence 9999999999999999986 5788999999999999643 33 3466554
No 105
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=1.3e-13 Score=128.80 Aligned_cols=137 Identities=22% Similarity=0.269 Sum_probs=95.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~ 250 (755)
++++.+++|+|||.+++.++..+...+. .++++|+||...+ .+|...+.+|......+..+.+........ .
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~-----~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 74 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLK-----GGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--K 74 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhccc-----CCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--H
Confidence 6899999999999999999998887632 2568999999655 566777778775222333333322211111 0
Q ss_pred HHHHHhCCCCCCCEEEEehhhHhhhhhhh--hcCCccEEEEeCCcccCCCccHHH---HHHHccccccEEEeecCC
Q psy5647 251 SFMQTYGRRPVNPILVISYETFRSHASVL--HKNEVGLVLCDEGHRLKNCESQTY---QALMGLKAKRRVLLSGTP 321 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~sye~l~~~~~~l--~~~~~~lvIiDEaH~lKn~~s~~~---~al~~l~~~~rllLTGTP 321 (755)
. .....+++++||+.+....... ....+++||+||+|.+.+...... .........+++++||||
T Consensus 75 ~------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 L------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred H------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 0 0134689999999887654332 345799999999999988765554 344455788899999998
No 106
>KOG0351|consensus
Probab=99.48 E-value=7.4e-13 Score=156.81 Aligned_cols=311 Identities=16% Similarity=0.178 Sum_probs=208.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
...||-|.++|... ..+.-+.+-..+|.||.+.-..-+ ++ . .+-+|||.|. ||+.-...-
T Consensus 263 ~~FR~~Q~eaI~~~---------l~Gkd~fvlmpTG~GKSLCYQlPA--~l------~--~gitvVISPL~SLm~DQv~~ 323 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT---------LSGKDCFVLMPTGGGKSLCYQLPA--LL------L--GGVTVVISPLISLMQDQVTH 323 (941)
T ss_pred ccCChhHHHHHHHH---------HcCCceEEEeecCCceeeEeeccc--cc------c--CCceEEeccHHHHHHHHHHh
Confidence 46899999999843 356789999999999987542111 01 0 1248999999 777544444
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhc----CCccEEEEeCCcccC
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHK----NEVGLVLCDEGHRLK 296 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~----~~~~lvIiDEaH~lK 296 (755)
+ .+..+....+.++........+.+.+.. ..+...++.+|.|.+...... +.. .-..++|+||||...
T Consensus 324 L---~~~~I~a~~L~s~q~~~~~~~i~q~l~~--~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 324 L---SKKGIPACFLSSIQTAAERLAILQKLAN--GNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred h---hhcCcceeeccccccHHHHHHHHHHHhC--CCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 4 3445666666665544333333333322 224567999999998653221 111 226899999999875
Q ss_pred CCc---cHHHHHH----HccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHH
Q psy5647 297 NCE---SQTYQAL----MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369 (755)
Q Consensus 297 n~~---s~~~~al----~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~ 369 (755)
... -.-|+.+ ..+..--.|+||||--..--.|+...|+.-+|..+. ..|
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~------~sf------------------ 454 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK------SSF------------------ 454 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec------ccC------------------
Confidence 432 2233333 333445679999997666666666666665554221 111
Q ss_pred HHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHH
Q psy5647 370 KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITS 449 (755)
Q Consensus 370 ~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 449 (755)
.++...+-|.-+.+
T Consensus 455 ----------------------------nR~NL~yeV~~k~~-------------------------------------- 468 (941)
T KOG0351|consen 455 ----------------------------NRPNLKYEVSPKTD-------------------------------------- 468 (941)
T ss_pred ----------------------------CCCCceEEEEeccC--------------------------------------
Confidence 11111121211111
Q ss_pred HHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHH
Q psy5647 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLD 528 (755)
Q Consensus 450 Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld 528 (755)
+. .+..++..++ -..++..||+|.++.+.+
T Consensus 469 ------------------------------------------------~~-~~~~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 469 ------------------------------------------------KD-ALLDILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred ------------------------------------------------cc-chHHHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 00 0000011110 135778899999999999
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 529 ~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
.+...|+..|+....|+.+++.++|..+-..|..+.- .+++.|=|.|-|||-....-||+|..|-+-..|-|..||++
T Consensus 500 ~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~--~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAG 577 (941)
T KOG0351|consen 500 QVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKI--RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAG 577 (941)
T ss_pred HHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCC--eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccC
Confidence 9999999999999999999999999999999997553 46788899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEE
Q psy5647 609 RDGQKKPCFVYR 620 (755)
Q Consensus 609 R~GQ~k~V~Vyr 620 (755)
|+|+...|..|.
T Consensus 578 RDG~~s~C~l~y 589 (941)
T KOG0351|consen 578 RDGLPSSCVLLY 589 (941)
T ss_pred cCCCcceeEEec
Confidence 999998887653
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=7.8e-12 Score=145.10 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=99.0
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|...+.+.+.... ..+..|||||++....+.|...|...|+++..++|.+...++.-+...++.+. ++++|
T Consensus 421 t~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIAT 495 (796)
T PRK12906 421 TLDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIAT 495 (796)
T ss_pred CHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEe
Confidence 34567777777766554 35899999999999999999999999999999999988666666655554332 78999
Q ss_pred CCcccccccC---CCC-----EEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 574 KAGGCGLNLI---GAN-----RLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 574 ~agg~GLNL~---~a~-----~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
..+|+|+++. ++. +||.++.|-|...+.|+.||++|.|..-...
T Consensus 496 nmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 496 NMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 9999999994 566 9999999999999999999999999885543
No 108
>KOG0344|consensus
Probab=99.45 E-value=2.9e-12 Score=139.92 Aligned_cols=122 Identities=14% Similarity=0.181 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH-HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS-KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L-~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
-+|+..+..++..- -.-.++||.|+.+....|-..| ...++.+..++|..+..+|...+++|+.+..- +|++|.
T Consensus 372 ~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw--vLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW--VLICTD 446 (593)
T ss_pred hhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee--EEEehh
Confidence 45666666666543 3568999999999888888888 67799999999999999999999999986554 789999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~ 624 (755)
..+.|+++.++|.||+||.+-.-..|+.++||++|-|+.-. .|.|.+.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 99999999999999999999999999999999999998742 3344444
No 109
>KOG0334|consensus
Probab=99.44 E-value=2.8e-12 Score=148.53 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|.+||..... +.++|||++...-+|.+.+-|...||....++|..+..+|...++.|.++.. .+|+.|+
T Consensus 596 e~eKf~kL~eLl~e~~e--~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~--~LLvaTs 671 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE--DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV--NLLVATS 671 (997)
T ss_pred chHHHHHHHHHHHHHhh--cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc--eEEEehh
Confidence 46788888899988864 6799999999999999999999999999999999999999999999997554 4889999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~ 624 (755)
....||++..-..||+||.+---..|..|.||.+|-|-+- .-|.|++.
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999999988888999999999988776 44556655
No 110
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.43 E-value=3.3e-13 Score=114.27 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 529 ~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
.+...|+..++.+..++|+++.++|.++++.|+++.. .+|++|.++++|+|++.++.||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4667788889999999999999999999999998554 67899999999999999999999999999999999999999
Q ss_pred ccC
Q psy5647 609 RDG 611 (755)
Q Consensus 609 R~G 611 (755)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 111
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.42 E-value=2.1e-11 Score=148.05 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=87.9
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcCCc---EEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEE
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYK---YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRL 588 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g~~---~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~v 588 (755)
....++|||++....++.+.+.|...+++ +..++|+++.++|.++++.+ +.+-+|+||..++.||++.+.+.|
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeEEEeccHHhhccccCcceEE
Confidence 34578999999999999999999988775 56789999999999886642 234578999999999999999999
Q ss_pred EEeC---------------CCCCC---CcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 589 VMFD---------------PDWNP---ANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 589 I~~D---------------~~WNp---~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
|.++ .+-.| +.+.||.||++|.+ +-..|+|++....
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9875 23333 67899999999973 5567899886543
No 112
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=9.5e-11 Score=136.75 Aligned_cols=121 Identities=13% Similarity=0.149 Sum_probs=102.7
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|+..+...+.... ..+.+|||||++....+.+..+|...|+++..++|. ..+|...+..|..++.. ++++|
T Consensus 411 t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIAT 485 (830)
T PRK12904 411 TEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIAT 485 (830)
T ss_pred CHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEec
Confidence 44567777777776654 358899999999999999999999999999999996 67899999999875554 78999
Q ss_pred CCcccccccC--------------------------------------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCc
Q psy5647 574 KAGGCGLNLI--------------------------------------GANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 574 ~agg~GLNL~--------------------------------------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
..+|.|+++. |.=+||.-..+-|-..+.|..||++|.|..-.
T Consensus 486 NmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGs 565 (830)
T PRK12904 486 NMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGS 565 (830)
T ss_pred ccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCc
Confidence 9999999973 35688888999999999999999999999866
Q ss_pred EEEE
Q psy5647 616 CFVY 619 (755)
Q Consensus 616 V~Vy 619 (755)
...|
T Consensus 566 s~f~ 569 (830)
T PRK12904 566 SRFY 569 (830)
T ss_pred eeEE
Confidence 5544
No 113
>KOG0346|consensus
Probab=99.41 E-value=1.2e-11 Score=130.33 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=88.8
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC-------------------
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK------------------- 574 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~------------------- 574 (755)
..|.|||.|..+..-.+.-+|+..|++.+.+.|.++..-|.-++++||.+.-. ++|.|+
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--ivIAtD~s~~~~~~eee~kgk~~e~ 345 (569)
T KOG0346|consen 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--IVIATDDSADGDKLEEEVKGKSDEK 345 (569)
T ss_pred cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee--EEEEccCccchhhhhcccccccccc
Confidence 46999999999999999999999999999999999999999999999975443 455555
Q ss_pred -------C---------cccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 575 -------A---------GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 575 -------a---------gg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
+ ...||++...+.|+.||.|-++..|+.|+||..|-|.+-.+.
T Consensus 346 ~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 346 NPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred CCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 1 136999999999999999999999999999999988776544
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.41 E-value=1.8e-10 Score=134.22 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
.+++..|..-+.... ..+.++|||++.....+.|.++|...|+++..++|.++..+|.+++..|..+.- .+|+++..
T Consensus 425 ~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i--~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF--DVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc--eEEEEcCh
Confidence 455555544444443 357899999999999999999999999999999999999999999999986543 47789999
Q ss_pred cccccccCCCCEEEEeC-----CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC--HHHHHHHH
Q psy5647 576 GGCGLNLIGANRLVMFD-----PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS--IEEKMMQR 634 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D-----~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT--iEEkI~~r 634 (755)
.+.|++++.++.||++| .+-+...++|++||++|.+ .-.++.|+...| +.+.|.+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHHH
Confidence 99999999999999999 4557789999999999973 233555665544 44555443
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=6.8e-11 Score=137.69 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=102.6
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|...+.+-+..+. ..|..|||||++....+.+..+|...|+++..+++..+..+|..+.+.|+.+. ++++
T Consensus 429 ~t~~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIA 503 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIA 503 (908)
T ss_pred eCHHHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEe
Confidence 344567666655555555 35899999999999999999999999999999999999999999999998754 7899
Q ss_pred cCCcccccccC-------------------------------------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCc
Q psy5647 573 SKAGGCGLNLI-------------------------------------GANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 573 t~agg~GLNL~-------------------------------------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
|..+|+|+++. |.=+||.-..+-|-..|.|..||++|.|..-.
T Consensus 504 TnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGs 583 (908)
T PRK13107 504 TNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGS 583 (908)
T ss_pred cCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCc
Confidence 99999999974 44588999999999999999999999998855
Q ss_pred EEE
Q psy5647 616 CFV 618 (755)
Q Consensus 616 V~V 618 (755)
...
T Consensus 584 s~f 586 (908)
T PRK13107 584 SRF 586 (908)
T ss_pred eeE
Confidence 443
No 116
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.38 E-value=2.9e-11 Score=147.29 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=87.8
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCC---cEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEE
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGY---KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLV 589 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~---~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI 589 (755)
....+|||.+....++.+.+.|...++ .+..++|+++.++|.++++.+ +. +-+++||..+.+||++.+...||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEE
Confidence 357899999999999999999987754 578899999999999885433 22 35789999999999999999999
Q ss_pred EeCCC----C--------------CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHH
Q psy5647 590 MFDPD----W--------------NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628 (755)
Q Consensus 590 ~~D~~----W--------------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiE 628 (755)
-++.. + +.+.+.||.||++|.| +-.+|||++....+
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 87732 1 3357899999999987 55678999865443
No 117
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.38 E-value=5.1e-10 Score=114.96 Aligned_cols=301 Identities=16% Similarity=0.213 Sum_probs=184.5
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
.++|-|+|+.+.+.+.+.+ ....-.|+-.-+|.|||=+....+...+++|. ++.|..|. -++-.-..
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i-----~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~-------~vciASPRvDVclEl~~ 162 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYI-----KQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG-------RVCIASPRVDVCLELYP 162 (441)
T ss_pred ccccChhHHHHHHHHHHHH-----HhcCcEEEEEecCCCchhhhHHHHHHHHhcCC-------eEEEecCcccchHHHHH
Confidence 4689999999999998877 46677899999999999999999988888884 48888898 44444445
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCC-EEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc-c
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNP-ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE-S 300 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~-s 300 (755)
.++.-+.+ .....++|.+...-. .+ |+-||+..++ .. .-||++|+||..-+--.+ -
T Consensus 163 Rlk~aF~~-~~I~~Lyg~S~~~fr---------------~plvVaTtHQLlr-Fk-----~aFD~liIDEVDAFP~~~d~ 220 (441)
T COG4098 163 RLKQAFSN-CDIDLLYGDSDSYFR---------------APLVVATTHQLLR-FK-----QAFDLLIIDEVDAFPFSDDQ 220 (441)
T ss_pred HHHHhhcc-CCeeeEecCCchhcc---------------ccEEEEehHHHHH-HH-----hhccEEEEeccccccccCCH
Confidence 55554443 233344444432110 13 4445555554 22 248999999999874332 3
Q ss_pred HHHHHHHcc--ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGL--KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 301 ~~~~al~~l--~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
....|+..- ....+|.|||||-..=..++- .|.
T Consensus 221 ~L~~Av~~ark~~g~~IylTATp~k~l~r~~~--------------------------~g~------------------- 255 (441)
T COG4098 221 SLQYAVKKARKKEGATIYLTATPTKKLERKIL--------------------------KGN------------------- 255 (441)
T ss_pred HHHHHHHHhhcccCceEEEecCChHHHHHHhh--------------------------hCC-------------------
Confidence 344444443 345689999999421101100 000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
+.. ++-...--.+.||.... +++. ..-+ .+..++
T Consensus 256 ---~~~--~klp~RfH~~pLpvPkf--~w~~--~~~k--------------~l~r~k----------------------- 289 (441)
T COG4098 256 ---LRI--LKLPARFHGKPLPVPKF--VWIG--NWNK--------------KLQRNK----------------------- 289 (441)
T ss_pred ---eeE--eecchhhcCCCCCCCce--EEec--cHHH--------------Hhhhcc-----------------------
Confidence 000 00000000112332222 2221 0000 000000
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR- 537 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~- 537 (755)
.+. .|...|+.-+ .++..++||.....+++.+...|+..
T Consensus 290 ------------------------------------l~~---kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~ 329 (441)
T COG4098 290 ------------------------------------LPL---KLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKL 329 (441)
T ss_pred ------------------------------------CCH---HHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhC
Confidence 011 1222333333 35789999999999999999888543
Q ss_pred CC-cEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC--CCCCcHHHHhHhhhccCCC
Q psy5647 538 GY-KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD--WNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 538 g~-~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~--WNp~~~~Qa~gR~~R~GQ~ 613 (755)
+. ....++.. ...|.+.|++|+++... +|++|.....|+.++..+..|+=.-. ++-+...|-.||++|--..
T Consensus 330 ~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~--lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 330 PKETIASVHSE--DQHRKEKVEAFRDGKIT--LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred Cccceeeeecc--CccHHHHHHHHHcCceE--EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC
Confidence 22 22333333 35799999999986654 89999999999999999999886555 8889999999999996543
No 118
>KOG0952|consensus
Probab=99.37 E-value=1.6e-10 Score=133.15 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=100.0
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC---CCCCCCeEEEEeCC-cchHhHHHHHHHHhC-CCceEEEecCCCH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL---AKPLIDKAIIVAPS-SLVKNWCNEITKWLG-GRVAALPIDGGSK 242 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~---~~p~~~~~LIV~P~-sll~nW~~E~~kw~~-~~~~~~~~~~~~~ 242 (755)
..+.++|++.++|+|||..|...|..+++++.. -....-+++.|+|. +|...-.+.|.+-+. -.+.+..+.|...
T Consensus 124 ~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~q 203 (1230)
T KOG0952|consen 124 KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQ 203 (1230)
T ss_pred cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcch
Confidence 467899999999999999988877777765221 11123478999998 544333333333222 2577777877654
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh----hh-hhhhcCCccEEEEeCCcccCCCc-----cHHHHHHHc----
Q psy5647 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRS----HA-SVLHKNEVGLVLCDEGHRLKNCE-----SQTYQALMG---- 308 (755)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~----~~-~~l~~~~~~lvIiDEaH~lKn~~-----s~~~~al~~---- 308 (755)
....+ +. ..+|+|||.|.+-- .. +.-....+.+||+||.|-|.... +-.++.++.
T Consensus 204 l~~te-i~----------~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 204 LTKTE-IA----------DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred hhHHH-HH----------hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 33222 11 25799999998731 11 11111247899999999998754 333333322
Q ss_pred cccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhc
Q psy5647 309 LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351 (755)
Q Consensus 309 l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f 351 (755)
...-|.++||||- . |..| +-.||...+....-.|...|
T Consensus 273 qs~IRivgLSATl-P-N~eD---vA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 273 QSMIRIVGLSATL-P-NYED---VARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred hhheEEEEeeccC-C-CHHH---HHHHhcCCCccceeeecccc
Confidence 2456779999994 2 3333 44555554333333344333
No 119
>KOG0352|consensus
Probab=99.36 E-value=6.7e-11 Score=123.98 Aligned_cols=319 Identities=18% Similarity=0.237 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITK 226 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~k 226 (755)
-|-|..+++-+. .+...+.+.+.+|.||++.--.-. |+..+ -++||.|. .|+....+.+.+
T Consensus 22 s~LQE~A~~c~V--------K~k~DVyVsMPTGaGKSLCyQLPa--L~~~g--------ITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 22 SRLQEQAINCIV--------KRKCDVYVSMPTGAGKSLCYQLPA--LVHGG--------ITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred ChHHHHHHHHHH--------hccCcEEEeccCCCchhhhhhchH--HHhCC--------eEEEehHHHHHHHHHHHHHHh
Confidence 377988887665 356789999999999997533221 22222 26888888 566666666654
Q ss_pred HhCCCceEEEecCC-CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh-----hhhhhhc-CCccEEEEeCCcccCCC-
Q psy5647 227 WLGGRVAALPIDGG-SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRS-----HASVLHK-NEVGLVLCDEGHRLKNC- 298 (755)
Q Consensus 227 w~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~-----~~~~l~~-~~~~lvIiDEaH~lKn~- 298 (755)
. .+.+-.+.+. +..++.+.+.... ..++...++.+|.|+... ....|.+ ....++++||||.....
T Consensus 84 L---KVp~~SLNSKlSt~ER~ri~~DL~---~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWG 157 (641)
T KOG0352|consen 84 L---KVPCESLNSKLSTVERSRIMGDLA---KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWG 157 (641)
T ss_pred c---CCchhHhcchhhHHHHHHHHHHHH---hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhc
Confidence 3 1222222222 2233333333322 223556789999987653 3333333 35678999999986421
Q ss_pred -----ccHHHHHHHc-cccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHH
Q psy5647 299 -----ESQTYQALMG-LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372 (755)
Q Consensus 299 -----~s~~~~al~~-l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~ 372 (755)
+-.+.-+|++ +..-.-++||||--..--+|+|..+.+-+|- ..|..|-.+.
T Consensus 158 HDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PV---------AiFkTP~FR~-------------- 214 (641)
T KOG0352|consen 158 HDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPV---------AIFKTPTFRD-------------- 214 (641)
T ss_pred cccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcH---------HhccCcchhh--------------
Confidence 2222222322 2333458999998666667888888876663 2233322110
Q ss_pred HHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 373 ~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
--+|+...++. + -..++.|..
T Consensus 215 ------------------------------------------NLFYD~~~K~~-----I------------~D~~~~LaD 235 (641)
T KOG0352|consen 215 ------------------------------------------NLFYDNHMKSF-----I------------TDCLTVLAD 235 (641)
T ss_pred ------------------------------------------hhhHHHHHHHH-----h------------hhHhHhHHH
Confidence 00121111100 0 000111111
Q ss_pred HhCC----hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHH
Q psy5647 453 LCNH----PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLD 528 (755)
Q Consensus 453 ~~nh----p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld 528 (755)
.|.| |.-+. .-...-..--||||..+...+
T Consensus 236 F~~~~LG~~~~~~----------------------------------------------~~~K~~~GCGIVYCRTR~~cE 269 (641)
T KOG0352|consen 236 FSSSNLGKHEKAS----------------------------------------------QNKKTFTGCGIVYCRTRNECE 269 (641)
T ss_pred HHHHhcCChhhhh----------------------------------------------cCCCCcCcceEEEeccHHHHH
Confidence 1111 10000 000011346699999999999
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 529 ~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
.+.-.|..+|+....++.+....+|..+.+.|.++..+ +++.|-..|.|++=+...-||+.|++-|-+.|-|--||++
T Consensus 270 q~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAG 347 (641)
T KOG0352|consen 270 QVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAG 347 (641)
T ss_pred HHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccc
Confidence 99999999999999999999999999999999987776 6788899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEE
Q psy5647 609 RDGQKKPCFVYR 620 (755)
Q Consensus 609 R~GQ~k~V~Vyr 620 (755)
|+|-..-|..|+
T Consensus 348 RDGk~SyCRLYY 359 (641)
T KOG0352|consen 348 RDGKRSYCRLYY 359 (641)
T ss_pred cCCCccceeeee
Confidence 999888888764
No 120
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.34 E-value=2e-11 Score=118.85 Aligned_cols=157 Identities=23% Similarity=0.353 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKW 227 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw 227 (755)
|+|.+++.-+. .+...++..++|+|||..++..+...+..+.. ..++|++|. .++.+-.+++.++
T Consensus 2 ~~Q~~~~~~i~---------~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~-----~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 2 PLQQEAIEAII---------SGKNVLISAPTGSGKTLAYILPALNRLQEGKD-----ARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp HHHHHHHHHHH---------TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSS-----SEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------cCCCEEEECCCCCccHHHHHHHHHhhhccCCC-----ceEEEEeeccccccccccccccc
Confidence 89999998774 34569999999999999999877776655421 368999998 7888999999999
Q ss_pred hCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCC-ccHHH
Q psy5647 228 LGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNC-ESQTY 303 (755)
Q Consensus 228 ~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~-~s~~~ 303 (755)
+.. ...+..+.++...... ...+.. ...+|+|+|++.|...... ..-...++||+||+|.+-.. .....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~ 140 (169)
T PF00270_consen 68 FSNTNVRVVLLHGGQSISED--QREVLS-----NQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAML 140 (169)
T ss_dssp TTTTTSSEEEESTTSCHHHH--HHHHHH-----TTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHH
T ss_pred cccccccccccccccccccc--cccccc-----ccccccccCcchhhccccccccccccceeeccCcccccccccHHHHH
Confidence 875 4566666665542211 111111 2358999999999876653 12234899999999998663 22222
Q ss_pred HH-HHcc---ccccEEEeecCCCcCCHH
Q psy5647 304 QA-LMGL---KAKRRVLLSGTPIQNDLL 327 (755)
Q Consensus 304 ~a-l~~l---~~~~rllLTGTPiqN~l~ 327 (755)
.. +..+ ...+.+++||||- .+++
T Consensus 141 ~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 141 KSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred HHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 22 3333 3467899999997 4444
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.31 E-value=9e-10 Score=129.33 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
.+++..|...|..+. ..+.++||||+.....+.+...|...|+++..++|.++..+|..++..|..+.- .+|+++..
T Consensus 429 ~~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i--~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF--DVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc--eEEEEeCH
Confidence 445555555555444 347899999999999999999999999999999999999999999999986543 47789999
Q ss_pred cccccccCCCCEEEEeCC-----CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 576 GGCGLNLIGANRLVMFDP-----DWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~-----~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
.+.|++++.++.||++|. +-++..+.|++||++|. . .-.++.|+...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999997 45888999999999994 2 23455566543
No 122
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.31 E-value=4.6e-11 Score=120.30 Aligned_cols=158 Identities=19% Similarity=0.189 Sum_probs=104.1
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++++|.+++..+.+ ++++++..++|.|||+..+..+...+...... ...++|||+|. .++.||...+
T Consensus 21 ~~~~~Q~~~~~~~~~---------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~--~~~~viii~p~~~L~~q~~~~~ 89 (203)
T cd00268 21 KPTPIQARAIPPLLS---------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKK--DGPQALILAPTRELALQIAEVA 89 (203)
T ss_pred CCCHHHHHHHHHHhc---------CCcEEEECCCCCcHHHHHHHHHHHHHHhhccc--CCceEEEEcCCHHHHHHHHHHH
Confidence 588999999988743 56899999999999998655444444333100 12468999999 7889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-c
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE-S 300 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~-s 300 (755)
.++... .+.+..+.|+....... ..+. ...+|+|+|.+.+...... +.-..++++|+||+|.+.+.. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~ 161 (203)
T cd00268 90 RKLGKHTNLKVVVIYGGTSIDKQI--RKLK------RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFE 161 (203)
T ss_pred HHHhccCCceEEEEECCCCHHHHH--HHhc------CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChH
Confidence 998763 45555566654332211 1111 2357999999887553321 222357899999999986543 2
Q ss_pred HHHH-HHHccc-cccEEEeecCCC
Q psy5647 301 QTYQ-ALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 301 ~~~~-al~~l~-~~~rllLTGTPi 322 (755)
.... .+..+. ....+++||||-
T Consensus 162 ~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 162 DQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHHHHhCCcccEEEEEeccCC
Confidence 2222 233343 567899999986
No 123
>KOG0951|consensus
Probab=99.26 E-value=2e-10 Score=133.89 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=99.2
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC-C---CCCCCeEEEEeCC-cchHhHHHHHHHHhCC-CceEEEecCCC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL-A---KPLIDKAIIVAPS-SLVKNWCNEITKWLGG-RVAALPIDGGS 241 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~-~---~p~~~~~LIV~P~-sll~nW~~E~~kw~~~-~~~~~~~~~~~ 241 (755)
....+.+|+.++|.|||-.|+.-+..-+..+.. . ....-++..|+|- +|+..|...|.+|+.+ .+.+....|..
T Consensus 323 ~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~ 402 (1674)
T KOG0951|consen 323 RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDS 402 (1674)
T ss_pred cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccc
Confidence 456789999999999999888766554443322 0 1112367888888 8999999999999875 67777776653
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh----hhhhhcCCccEEEEeCCcccCC-CccHH----HHHHHcc---
Q psy5647 242 KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH----ASVLHKNEVGLVLCDEGHRLKN-CESQT----YQALMGL--- 309 (755)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~----~~~l~~~~~~lvIiDEaH~lKn-~~s~~----~~al~~l--- 309 (755)
.-. ..++. ..+|+++|.|.+--. -+.-...-++++|+||.|-+-. ..+.. .+...+.
T Consensus 403 ~l~----~~qie-------eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~ 471 (1674)
T KOG0951|consen 403 QLG----KEQIE-------ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSEST 471 (1674)
T ss_pred cch----hhhhh-------cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhc
Confidence 211 11221 246999999987211 1101111367899999999932 22222 2222222
Q ss_pred -ccccEEEeecCCCcCCHHHHHHhhhhhcCCCC
Q psy5647 310 -KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGIL 341 (755)
Q Consensus 310 -~~~~rllLTGTPiqN~l~El~sll~fl~p~~l 341 (755)
...+.++||||- -|..|.-+.+..-.+|+|
T Consensus 472 ~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 472 EEGSRLVGLSATL--PNYEDVASFLRVDPEGLF 502 (1674)
T ss_pred ccCceeeeecccC--CchhhhHHHhccCccccc
Confidence 346779999995 345565554443334544
No 124
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.25 E-value=3.1e-10 Score=119.52 Aligned_cols=221 Identities=20% Similarity=0.267 Sum_probs=130.6
Q ss_pred eEEEEEEcCCHHHHHHHHHHHhhH--HHHHHHcCCCccccc---------ccHHHHHHHHHHHhCChhhhhhhhhcCccc
Q psy5647 402 TEQVVCIKMTDLQKELYTNLIKSD--AVRRTMKGGENTKLG---------MTALSSITSLKKLCNHPDLVMDKIQTGADG 470 (755)
Q Consensus 402 ~e~vv~~~ls~~q~~lY~~~~~~~--~~~~~~~~~~~~~~~---------~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~ 470 (755)
.++.+.+.|+..|+++|+.++... .+...+.+....... ...-..+..++.+|+||+|+.+......
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~-- 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ-- 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S---
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc--
Confidence 467889999999999999998643 344444333221111 2334456889999999999865432221
Q ss_pred hhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHH----hccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcC
Q psy5647 471 FENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI----KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546 (755)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~----~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG 546 (755)
. ............|||+.+|..++..+ ....+-+++|+++...++|++|.+|.-.++.|-|++|
T Consensus 82 -----------l-l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg 149 (297)
T PF11496_consen 82 -----------L-LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSG 149 (297)
T ss_dssp -----------S--STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS
T ss_pred -----------c-ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCC
Confidence 1 01133456778899999999999998 1244679999999999999999999999999999999
Q ss_pred CCCHHHHHHHH------------HHHcc--CCCceEEEeecCCccc----ccccCCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 547 SMTIKKRAKVV------------ETFNK--TSNEFIFMLSSKAGGC----GLNLIGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 547 ~~~~~~R~~~v------------~~Fn~--~~~~~v~LlSt~agg~----GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
..-..+..+.- ..... .....++|+++.-... .++-...+-||-||+.+++....-..-|.+
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~ 229 (297)
T PF11496_consen 150 ESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQ 229 (297)
T ss_dssp --S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--
T ss_pred CCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhh
Confidence 86654443333 11111 2344566666654433 133356789999999999998776666665
Q ss_pred ccCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q psy5647 609 RDGQKKPCFVYRFLSTGSIEEKMMQRQAH 637 (755)
Q Consensus 609 R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~ 637 (755)
...+ +.+-|+||+..+|+|--+......
T Consensus 230 ~~~~-~~~PiirLv~~nSiEHi~L~~~~~ 257 (297)
T PF11496_consen 230 NRRN-RLCPIIRLVPSNSIEHIELCFPKS 257 (297)
T ss_dssp ------S--EEEEEETTSHHHHHHHHTTT
T ss_pred cCCC-CCCcEEEEeeCCCHHHHHHHccCc
Confidence 4444 889999999999999887766553
No 125
>KOG0327|consensus
Probab=99.24 E-value=8.5e-11 Score=122.69 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcc
Q psy5647 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGG 577 (755)
Q Consensus 498 Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg 577 (755)
|+..|..+.. .-...+||++...-++.+...|..+|+....++|.+...+|..+...|+.++.. +|++|...+
T Consensus 252 k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttdl~a 324 (397)
T KOG0327|consen 252 KLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTDLLA 324 (397)
T ss_pred cccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce--EEeeccccc
Confidence 5555555555 135779999999999999999999999999999999999999999999986664 789999999
Q ss_pred cccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 578 CGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 578 ~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
.|++++.++-||.||.|-|..+|..++||++|.|-+- + ...+++..
T Consensus 325 rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg-~-~in~v~~~ 370 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG-V-AINFVTEE 370 (397)
T ss_pred cccchhhcceeeeeccccchhhhhhhcccccccCCCc-e-eeeeehHh
Confidence 9999999999999999999999999999999999643 2 23455543
No 126
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=2.8e-09 Score=124.93 Aligned_cols=119 Identities=10% Similarity=0.120 Sum_probs=100.4
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|+..+...+.... ..+..|||||++....+.|..+|...|+++..|++ ...+|...+-.|...+.. ++++
T Consensus 578 ~t~~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIA 652 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIA 652 (1025)
T ss_pred cCHHHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEe
Confidence 344568888888777665 35899999999999999999999999999999998 467899999999875554 8899
Q ss_pred cCCcccccccC---CCC-----EEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 573 SKAGGCGLNLI---GAN-----RLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 573 t~agg~GLNL~---~a~-----~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|..+|+|+++. ++. +||..+.+-+...|.|++||++|.|..-..
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999999997 332 448889999999999999999999987543
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.23 E-value=4.9e-10 Score=133.38 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=101.5
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc--CCCceEEEeecCCcccccccCCCCEEE
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK--TSNEFIFMLSSKAGGCGLNLIGANRLV 589 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~--~~~~~v~LlSt~agg~GLNL~~a~~vI 589 (755)
..+.||+|.+|....+..+...|+..+.+++.+++.+...+|.+.++...+ ..+...++++|.+...|+|+. .+.+|
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI 516 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI 516 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeee
Confidence 357899999999999999999999988889999999999999999986653 122234789999999999998 55554
Q ss_pred EeCCCCCCCcHHHHhHhhhccC--CCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhh
Q psy5647 590 MFDPDWNPANDDQAMARVWRDG--QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645 (755)
Q Consensus 590 ~~D~~WNp~~~~Qa~gR~~R~G--Q~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~v 645 (755)
-|+ --....+||.||++|-| ....++||...-.+....+.++....+..-....
T Consensus 517 -Te~-aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (733)
T COG1203 517 -TEL-APIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEEL 572 (733)
T ss_pred -ecC-CCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcccccc
Confidence 222 12456899999999999 5566888877777777777777766655544333
No 128
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.23 E-value=2.6e-10 Score=117.94 Aligned_cols=234 Identities=20% Similarity=0.223 Sum_probs=144.8
Q ss_pred hcCCcHHHHHHHHHHHHHhhcc-cccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC-CcchHhHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGV-RIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP-SSLVKNWC 221 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~-~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P-~sll~nW~ 221 (755)
...|-.-|.|+|-+.-+..... ....+.|.+|+|.+|.||..|+.++|.....+|. ++.|.|.. ..|..-=.
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr------~r~vwvS~s~dL~~Da~ 108 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR------KRAVWVSVSNDLKYDAE 108 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC------CceEEEECChhhhhHHH
Confidence 4578899999999887665421 1134789999999999999999999998888774 23455554 46666555
Q ss_pred HHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh-------hhhc------CCc-cEE
Q psy5647 222 NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS-------VLHK------NEV-GLV 287 (755)
Q Consensus 222 ~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~-------~l~~------~~~-~lv 287 (755)
+.+..-....+.+..+..-... .......+|+.+||.++..... .+.. ..| .+|
T Consensus 109 RDl~DIG~~~i~v~~l~~~~~~------------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvi 176 (303)
T PF13872_consen 109 RDLRDIGADNIPVHPLNKFKYG------------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVI 176 (303)
T ss_pred HHHHHhCCCcccceechhhccC------------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceE
Confidence 5555443333333333221100 0112345799999999876521 1111 123 489
Q ss_pred EEeCCcccCCCcc------HHHHHHHcc----ccccEEEeecCCCcCCHHHHHHhhhhhcCCC------CCChHHHHHhc
Q psy5647 288 LCDEGHRLKNCES------QTYQALMGL----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGI------LGTAQEFRKQY 351 (755)
Q Consensus 288 IiDEaH~lKn~~s------~~~~al~~l----~~~~rllLTGTPiqN~l~El~sll~fl~p~~------l~~~~~F~~~f 351 (755)
|+||||+.||..+ ++..++..| +..+.+..|||...+ --+|.-+.+-|+ |.+..+|....
T Consensus 177 vfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase----p~NmaYm~RLGLWG~gtpf~~~~~f~~a~ 252 (303)
T PF13872_consen 177 VFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE----PRNMAYMSRLGLWGPGTPFPDFDDFLEAM 252 (303)
T ss_pred EeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC----CceeeeeeeccccCCCCCCCCHHHHHHHH
Confidence 9999999999765 566676554 456889999999854 122222223333 44566666554
Q ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHHHh--HhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHH
Q psy5647 352 ETPILRGQDSCASDAERTKANERLEQLIGI--VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTN 420 (755)
Q Consensus 352 ~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~--l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~ 420 (755)
+. +. ....+-+..- ....+++|.-+ +-.-...++.+.+++.|.++|+.
T Consensus 253 ~~----gG------------v~amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 253 EK----GG------------VGAMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred Hh----cC------------chHHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 32 11 1111111111 23455666543 44556788899999999999974
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.21 E-value=3.5e-09 Score=128.56 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=57.4
Q ss_pred CCCEEEEEEechhHHHHHHHHHHh----cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCC--
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKL----RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGAN-- 586 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~----~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~-- 586 (755)
.+.+++||+.+...++.+...|.. .++.. +..+.. ..|.+++++|.++.+. +|+++....+|+|+.+..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~--iLlgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKA--ILLGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCe--EEEEcceeecccccCCCceE
Confidence 456899999999999998888865 34443 333333 4789999999875443 667889999999997655
Q ss_pred EEEEeCCCC
Q psy5647 587 RLVMFDPDW 595 (755)
Q Consensus 587 ~vI~~D~~W 595 (755)
.||+.-.|+
T Consensus 748 ~viI~~LPf 756 (850)
T TIGR01407 748 CLVIPRLPF 756 (850)
T ss_pred EEEEeCCCC
Confidence 566766665
No 130
>KOG0353|consensus
Probab=99.16 E-value=8.1e-10 Score=114.08 Aligned_cols=315 Identities=15% Similarity=0.162 Sum_probs=203.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.+.||-|+++++... .+..++|...+|-||++.--.-+ +...| -+|||||. ||+....-.
T Consensus 93 ekfrplq~~ain~~m---------a~ed~~lil~tgggkslcyqlpa--l~adg--------~alvi~plislmedqil~ 153 (695)
T KOG0353|consen 93 EKFRPLQLAAINATM---------AGEDAFLILPTGGGKSLCYQLPA--LCADG--------FALVICPLISLMEDQILQ 153 (695)
T ss_pred HhcChhHHHHhhhhh---------ccCceEEEEeCCCccchhhhhhH--HhcCC--------ceEeechhHHHHHHHHHH
Confidence 478999999998753 45678899999999997543222 22222 27999999 777666555
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh-------hhhhcCCccEEEEeCCcccC
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA-------SVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~-------~~l~~~~~~lvIiDEaH~lK 296 (755)
++.. + +....+...+..+....+...+. .....+..+.+|.+.+.... ..+....|.+|-+||.|...
T Consensus 154 lkql-g--i~as~lnansske~~k~v~~~i~--nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccs 228 (695)
T KOG0353|consen 154 LKQL-G--IDASMLNANSSKEEAKRVEAAIT--NKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCS 228 (695)
T ss_pred HHHh-C--cchhhccCcccHHHHHHHHHHHc--CCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehh
Confidence 5543 2 22223333333333333333332 33456778999999876432 33444568899999999764
Q ss_pred C-------CccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHH
Q psy5647 297 N-------CESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369 (755)
Q Consensus 297 n-------~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~ 369 (755)
. ..+...-.-++++....++||||...|-+.|...++-.- ..-.|+.-|..|-
T Consensus 229 qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~n-------------- 288 (695)
T KOG0353|consen 229 QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRPN-------------- 288 (695)
T ss_pred hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCCC--------------
Confidence 3 222233333556778889999999887776665444321 0011222222211
Q ss_pred HHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHH
Q psy5647 370 KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITS 449 (755)
Q Consensus 370 ~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 449 (755)
....++ -+++..+ +
T Consensus 289 -------------------------------l~yev~-qkp~n~d-d--------------------------------- 302 (695)
T KOG0353|consen 289 -------------------------------LKYEVR-QKPGNED-D--------------------------------- 302 (695)
T ss_pred -------------------------------ceeEee-eCCCChH-H---------------------------------
Confidence 111111 1111000 0
Q ss_pred HHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHH
Q psy5647 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLD 528 (755)
Q Consensus 450 Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld 528 (755)
.++.+...++ .-.|..-||||-+..-.+
T Consensus 303 ---------------------------------------------------~~edi~k~i~~~f~gqsgiiyc~sq~d~e 331 (695)
T KOG0353|consen 303 ---------------------------------------------------CIEDIAKLIKGDFAGQSGIIYCFSQKDCE 331 (695)
T ss_pred ---------------------------------------------------HHHHHHHHhccccCCCcceEEEeccccHH
Confidence 0011111111 023667799999888889
Q ss_pred HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHH------
Q psy5647 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ------ 602 (755)
Q Consensus 529 ~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Q------ 602 (755)
.+...|+..|+....++..+.+.+|..+-..|-.+... +++.|-|.|.||+-+....||+-..+-+..+|-|
T Consensus 332 kva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq--vivatvafgmgidkpdvrfvihhsl~ksienyyqasaril 409 (695)
T KOG0353|consen 332 KVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ--VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARIL 409 (695)
T ss_pred HHHHHHHhcCccccccccccCccccccccccccccceE--EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHH
Confidence 99999999999999999999999888887777654433 5678899999999999999999999999999999
Q ss_pred -------------------------------------HhHhhhccCCCCcEEEEEEe
Q psy5647 603 -------------------------------------AMARVWRDGQKKPCFVYRFL 622 (755)
Q Consensus 603 -------------------------------------a~gR~~R~GQ~k~V~Vyrlv 622 (755)
--||++|.|++-+|..|+=+
T Consensus 410 lrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 410 LRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred HHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 45899999999998876543
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=7.1e-08 Score=113.09 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=92.2
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|...+..-+..+. ..|..|||.+.+...-+.|..+|...|+++..+..... .+=.++|.+= +. ...+-++
T Consensus 548 ~t~~~k~~ai~~ei~~~~-~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A--G~-~g~VTIA 622 (970)
T PRK12899 548 MTEREKYHAIVAEIASIH-RKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA--GK-LGAVTVA 622 (970)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc--CC-CCcEEEe
Confidence 334566666555555554 35789999999999999999999999999999888643 2223455432 22 2246789
Q ss_pred cCCcccccccC--------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEE
Q psy5647 573 SKAGGCGLNLI--------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 573 t~agg~GLNL~--------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
|..+|+|.++. |.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 623 TNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 623 TNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred eccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999998863 556889999999999999999999999998654443
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=2.7e-08 Score=113.78 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|+..+.+-+..+. ..|..|||.+.+...-+.|..+|...|++...+...... +-.++|.+= +....+-++|
T Consensus 408 t~~~k~~Aii~ei~~~~-~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~-~EA~IIa~A---G~~gaVTIAT 482 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVH-ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA-EEARIIAEA---GKYGAVTVST 482 (764)
T ss_pred CHHHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH-hHHHHHHhc---CCCCcEEEEe
Confidence 34556665555555554 358999999999999999999999999999999887443 334555443 2222467899
Q ss_pred CCcccccccC---------------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEE
Q psy5647 574 KAGGCGLNLI---------------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 574 ~agg~GLNL~---------------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
..+|.|.++. |.=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 483 NMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 483 QMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred cCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999998864 456889899999999999999999999998655443
No 133
>KOG0337|consensus
Probab=99.09 E-value=2.4e-09 Score=112.70 Aligned_cols=123 Identities=14% Similarity=0.152 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
.|...|..++.... ..++.+||+......+.+...|+..|+....+.|++....|..-+.+|+..... +|++|+.+
T Consensus 246 ~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~--~lvvTdva 321 (529)
T KOG0337|consen 246 EKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS--ILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc--eEEEehhh
Confidence 45555555555543 256899999999999999999999999999999999999999899999875554 78999999
Q ss_pred ccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 577 g~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
..|++++.-+.||.||.|-.+..+..|.||+.|-|.+- ..|-||+..
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 99999999999999999999999999999999998653 456676654
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.04 E-value=6.1e-08 Score=105.26 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=109.9
Q ss_pred HHHHHHHHHhc--cCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCccc
Q psy5647 501 VLDTMLAVIKM--TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGC 578 (755)
Q Consensus 501 ~L~~lL~~~~~--~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~ 578 (755)
-++.|+..++. ..+++++|-+-...|.+-|.++|...|+++..++.....-+|.+++...+.+.-+ +|+...-+-+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D--vLVGINLLRE 508 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINLLRE 508 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc--EEEeehhhhc
Confidence 35666666543 4579999999999999999999999999999999999999999999999976554 7889999999
Q ss_pred ccccCCCCEEEEeCCCC-----CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q psy5647 579 GLNLIGANRLVMFDPDW-----NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAH 637 (755)
Q Consensus 579 GLNL~~a~~vI~~D~~W-----Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~ 637 (755)
||+++.++-|.++|.|- +-...+|-+||+-|--.-+ |..|-=..++++++.|-+...+
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHH
Confidence 99999999999999985 7789999999999954333 5555444556777766655443
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=2.3e-07 Score=108.71 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=93.3
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|...+.+-+..+. ..|..|||-+.+...-+.|..+|...|+++-.+.-... .+-..+|. +.+... .+-++
T Consensus 429 ~t~~eK~~Ai~~ei~~~~-~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G-aVTIA 503 (913)
T PRK13103 429 LTAEEKYAAIITDIKECM-ALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG-ALTIA 503 (913)
T ss_pred cCHHHHHHHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC-cEEEe
Confidence 444567776666666555 35899999999999999999999999999887777643 23344555 233222 46789
Q ss_pred cCCcccccccC-------------------------------------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCc
Q psy5647 573 SKAGGCGLNLI-------------------------------------GANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 573 t~agg~GLNL~-------------------------------------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
|..+|.|-++. |.=+||.-..+-|-..|.|..||++|.|..-.
T Consensus 504 TNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGs 583 (913)
T PRK13103 504 TNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGS 583 (913)
T ss_pred ccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 99999998873 45688999999999999999999999999865
Q ss_pred EEEE
Q psy5647 616 CFVY 619 (755)
Q Consensus 616 V~Vy 619 (755)
...|
T Consensus 584 S~f~ 587 (913)
T PRK13103 584 SRFY 587 (913)
T ss_pred eEEE
Confidence 5443
No 136
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.92 E-value=1.4e-07 Score=114.77 Aligned_cols=162 Identities=23% Similarity=0.254 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHh-hcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 147 LRPHQREGVKFMYECV-TGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 147 LrphQ~egv~~l~~~~-~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
-+-||..+++-..+.. .......+.||++.|-.|+|||++++-++..++.. +...++++|+-. -|-.|-.++|
T Consensus 249 ~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f 323 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEF 323 (962)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHH
Confidence 3445666665222222 22111456789999999999999999988888776 344568999988 5557888899
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh----hhcCCccEEEEeCCcccCCCcc
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV----LHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~----l~~~~~~lvIiDEaH~lKn~~s 300 (755)
..+........ ...+... +....... ...|+|||-+.|...... ......-+||+|||||--..
T Consensus 324 ~~~~~~~~~~~--~~~s~~~----Lk~~l~~~----~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-- 391 (962)
T COG0610 324 QSFGKVAFNDP--KAESTSE----LKELLEDG----KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-- 391 (962)
T ss_pred HHHHHhhhhcc--cccCHHH----HHHHHhcC----CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc--
Confidence 88765422211 2223333 33333322 346999999999876533 22345568999999985332
Q ss_pred HHHHHH-HccccccEEEeecCCCcCC
Q psy5647 301 QTYQAL-MGLKAKRRVLLSGTPIQND 325 (755)
Q Consensus 301 ~~~~al-~~l~~~~rllLTGTPiqN~ 325 (755)
...+.+ ..++...-++.||||+...
T Consensus 392 ~~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 392 ELAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred HHHHHHHHHhccceEEEeeCCccccc
Confidence 223332 2345577799999999754
No 137
>KOG0947|consensus
Probab=98.92 E-value=5.6e-08 Score=111.37 Aligned_cols=142 Identities=21% Similarity=0.312 Sum_probs=95.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH-HH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW-CN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW-~~ 222 (755)
...|-++|+++|--| ..+..+..|.-+-.|||+.|=..+......+ .+++.-.|--.+.|. -+
T Consensus 295 pFelD~FQk~Ai~~l---------erg~SVFVAAHTSAGKTvVAEYAialaq~h~-------TR~iYTSPIKALSNQKfR 358 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHL---------ERGDSVFVAAHTSAGKTVVAEYAIALAQKHM-------TRTIYTSPIKALSNQKFR 358 (1248)
T ss_pred CCCccHHHHHHHHHH---------HcCCeEEEEecCCCCcchHHHHHHHHHHhhc-------cceEecchhhhhccchHH
Confidence 357889999999766 4567899999999999999877665444333 457888898666554 56
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh----hhhhcCCccEEEEeCCcccCCC
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA----SVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~----~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
+|+.-++. +..+ .|.. ...+...++|+|-|.+|+.. +.+. +...||+||.|++.+.
T Consensus 359 DFk~tF~D-vgLl--TGDv---------------qinPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~ 418 (1248)
T KOG0947|consen 359 DFKETFGD-VGLL--TGDV---------------QINPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDV 418 (1248)
T ss_pred HHHHhccc-ccee--ecce---------------eeCCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccc
Confidence 78877765 2222 2221 01244579999999999753 3333 4677999999999764
Q ss_pred cc-HHHHHHHcc--ccccEEEeecCC
Q psy5647 299 ES-QTYQALMGL--KAKRRVLLSGTP 321 (755)
Q Consensus 299 ~s-~~~~al~~l--~~~~rllLTGTP 321 (755)
.. -.+.-+.-+ +--..|+||||-
T Consensus 419 eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 419 ERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred cccccceeeeeeccccceEEEEeccC
Confidence 42 233333222 233459999994
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.81 E-value=1.7e-07 Score=111.04 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=42.7
Q ss_pred CCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccCCCccHHHHH--HHc-cccccEEEeecCCCc
Q psy5647 262 NPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLKNCESQTYQA--LMG-LKAKRRVLLSGTPIQ 323 (755)
Q Consensus 262 ~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lKn~~s~~~~a--l~~-l~~~~rllLTGTPiq 323 (755)
..|+++|...+..+. ..+.-..+..||+||||++....+..+-+ .++ -+..+..++|+.|-.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 358999998887654 23333467899999999997654443332 222 156778999999954
No 139
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.81 E-value=1.1e-07 Score=112.86 Aligned_cols=146 Identities=23% Similarity=0.328 Sum_probs=101.6
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
....|-|+|++++.-+ ..+.+++++..+|.|||+.+-.++...++.+. +++...|- .|.+|=.
T Consensus 116 ~~F~LD~fQ~~a~~~L---------er~esVlV~ApTssGKTvVaeyAi~~al~~~q-------rviYTsPIKALsNQKy 179 (1041)
T COG4581 116 YPFELDPFQQEAIAIL---------ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-------RVIYTSPIKALSNQKY 179 (1041)
T ss_pred CCCCcCHHHHHHHHHH---------hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-------ceEeccchhhhhhhHH
Confidence 4568999999999776 56789999999999999999999988887763 48999998 5556666
Q ss_pred HHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh--hhhhcCCccEEEEeCCcccC
Q psy5647 222 NEITKWLGGR---VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA--SVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 222 ~E~~kw~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~--~~l~~~~~~lvIiDEaH~lK 296 (755)
++|..-++.- +..+. |. ....+..+|+++|-|.+|+.. ..-...+...||+||.|.+.
T Consensus 180 rdl~~~fgdv~~~vGL~T--GD---------------v~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~ 242 (1041)
T COG4581 180 RDLLAKFGDVADMVGLMT--GD---------------VSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG 242 (1041)
T ss_pred HHHHHHhhhhhhhcccee--cc---------------eeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc
Confidence 7776665531 11111 11 011245679999999998754 21222356789999999997
Q ss_pred CCccHH-HHH-HHcc-ccccEEEeecCC
Q psy5647 297 NCESQT-YQA-LMGL-KAKRRVLLSGTP 321 (755)
Q Consensus 297 n~~s~~-~~a-l~~l-~~~~rllLTGTP 321 (755)
...-.. +.. +..+ +.-+.++||||-
T Consensus 243 D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 243 DRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred ccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 765433 333 2333 334789999993
No 140
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.76 E-value=1.2e-07 Score=112.26 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=127.9
Q ss_pred cHHHHHHHHHHHHHhhccccc-----------------------------CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 148 RPHQREGVKFMYECVTGVRIE-----------------------------DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~-----------------------------~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.|||.+||..+...+.|.... ...++.+.+++|+|||.+++..|..+....
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 699999999998887765321 225788999999999999999999998875
Q ss_pred CCCCCCCCeEEEEeCCcch-HhHHH---------HHHHHhCC-CceEEEecCCC-----HHHHHHHHHHHHHHh-CCCCC
Q psy5647 199 PLAKPLIDKAIIVAPSSLV-KNWCN---------EITKWLGG-RVAALPIDGGS-----KAEIDNKLNSFMQTY-GRRPV 261 (755)
Q Consensus 199 ~~~~p~~~~~LIV~P~sll-~nW~~---------E~~kw~~~-~~~~~~~~~~~-----~~~~~~~l~~~~~~~-~~~~~ 261 (755)
+. .++|||||+..+ .-..+ -|..-+++ ++....++++. +......+..|.... .....
T Consensus 88 ~~-----~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~ 162 (986)
T PRK15483 88 GL-----FKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNT 162 (986)
T ss_pred CC-----cEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCc
Confidence 43 679999999544 22222 23333333 35556665443 112234566676653 11224
Q ss_pred CCEEEEehhhHhhhhh------hh--hc--CCc-------cEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc-
Q psy5647 262 NPILVISYETFRSHAS------VL--HK--NEV-------GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ- 323 (755)
Q Consensus 262 ~~VlI~sye~l~~~~~------~l--~~--~~~-------~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq- 323 (755)
..|+|+|.++|..... .+ .. ..| -.||+||+|++.. ..++++++..++.-..+.-|||--.
T Consensus 163 I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~~~ 241 (986)
T PRK15483 163 IHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFPDI 241 (986)
T ss_pred eEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecCCc
Confidence 5799999999976321 11 11 123 2799999999965 4568899999999999999999643
Q ss_pred ------CC--HHHHHHhhhhhcCCCCCChHHHHHhccCcc
Q psy5647 324 ------ND--LLEYFSLVHFVNQGILGTAQEFRKQYETPI 355 (755)
Q Consensus 324 ------N~--l~El~sll~fl~p~~l~~~~~F~~~f~~pi 355 (755)
|. -.++|+|+.-| +....|...-..-|
T Consensus 242 ~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I 276 (986)
T PRK15483 242 TEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGV 276 (986)
T ss_pred cccccccccccccccCceeec-----CHHHHHHhCCcceE
Confidence 11 12356555543 44556665554433
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=4.8e-06 Score=96.99 Aligned_cols=121 Identities=12% Similarity=0.148 Sum_probs=92.5
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|+..+.+-+.... ..|..|||.|.+...-+.|..+|...|++...+...... .=..+|. +.+... .+.++|
T Consensus 407 t~~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e-~EA~IIa--~AG~~G-aVTIAT 481 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNA-REAEIIA--KAGQKG-AITIAT 481 (925)
T ss_pred cHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchh-hHHHHHH--hCCCCC-eEEEec
Confidence 44567666655555554 358999999999999999999999999999999886432 2233443 333333 567899
Q ss_pred CCcccccccC--------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEE
Q psy5647 574 KAGGCGLNLI--------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 574 ~agg~GLNL~--------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
..+|.|.++. |.=+||....+-|-..+.|..||++|.|..-....|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999975 333899999999999999999999999988654443
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.71 E-value=1.8e-06 Score=102.78 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=60.7
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCC--CCEEE
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIG--ANRLV 589 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~--a~~vI 589 (755)
.++++|||..+-..+..+.+.+...... .+...|..+ +.+++++|.+..+. .+++.+....+|+|+.+ +..||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3458888888888888888888876653 455556543 44899999985543 68889999999999975 57888
Q ss_pred EeCCCCC
Q psy5647 590 MFDPDWN 596 (755)
Q Consensus 590 ~~D~~WN 596 (755)
+.-.|+-
T Consensus 554 I~~lPfp 560 (654)
T COG1199 554 IVGLPFP 560 (654)
T ss_pred EEecCCC
Confidence 8877774
No 143
>KOG1513|consensus
Probab=98.71 E-value=1.1e-06 Score=98.78 Aligned_cols=243 Identities=18% Similarity=0.222 Sum_probs=139.3
Q ss_pred hhcCCcHHHHHHHHHHHHHhhccc-ccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVR-IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~-~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW 220 (755)
-...|-.-|.|+|-+.-+...-.- .....|.+++|.-|.||-.+...+|..-.-+|. +++|.+.-+ -|-..-
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR------KrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR------KRALWFSVSSDLKFDA 334 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc------ceeEEEEeccccccch
Confidence 356788899999988765432211 134678899999999998887777766555553 456666555 454555
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh---------------hhhhhcCCc-
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH---------------ASVLHKNEV- 284 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~---------------~~~l~~~~~- 284 (755)
++.+......++.+..+..-.-..+... .....+..|+++||..+.-. ..++.. .|
T Consensus 335 ERDL~DigA~~I~V~alnK~KYakIss~-------en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge-~fe 406 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFKYAKISSK-------ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGE-DFE 406 (1300)
T ss_pred hhchhhcCCCCccceehhhccccccccc-------ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhh-ccc
Confidence 6666655444454444322111111100 11123457999999987432 112211 23
Q ss_pred cEEEEeCCcccCC-------CccHHHHHHHcc----ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCC------ChHHH
Q psy5647 285 GLVLCDEGHRLKN-------CESQTYQALMGL----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILG------TAQEF 347 (755)
Q Consensus 285 ~lvIiDEaH~lKn-------~~s~~~~al~~l----~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~------~~~~F 347 (755)
++||+||||+.|| ..+++.+.+..| ...+.+..|||-.. |=-+|..+++-|++| .+.+|
T Consensus 407 GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eF 482 (1300)
T KOG1513|consen 407 GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEF 482 (1300)
T ss_pred eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHH
Confidence 5899999999999 246777776554 66788999999654 334455556666655 44555
Q ss_pred HHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHH
Q psy5647 348 RKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422 (755)
Q Consensus 348 ~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~ 422 (755)
....+. +|... . +... +---+....|.|.-+ +-.....+-.++|+++-+.+|+.-.
T Consensus 483 i~AvEk---RGvGA--M--EIVA-------MDMK~rGmYiARQLS-----FkgVsFrieEv~ls~eF~k~Yn~a~ 538 (1300)
T KOG1513|consen 483 IHAVEK---RGVGA--M--EIVA-------MDMKLRGMYIARQLS-----FKGVSFRIEEVPLSKEFRKVYNRAA 538 (1300)
T ss_pred HHHHHh---cCCce--e--eeee-------hhhhhhhhhhhhhcc-----ccCceEEEEecccCHHHHHHHHHHH
Confidence 444332 12111 0 0000 000112222222111 3344567788999999999998653
No 144
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=2e-06 Score=102.79 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
..||.|++....+++++ ..+..+++-.++|+|||+.+++.........+ ...++++.+.+ +-+.|-.+|+
T Consensus 10 ~~y~~Q~~~m~~v~~~l-----~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSL-----DRGDEAILEMPSGTGKTISLLSLILAYQQEKP----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCHHHHHHHHHHHHHh-----ccCCceEEeCCCCCCccHHHHHHHHHHHHhcc----ccccEEEEcccchHHHHHHHHH
Confidence 46899999999999988 46778899999999999999987766655332 12356777777 6778899999
Q ss_pred HHH
Q psy5647 225 TKW 227 (755)
Q Consensus 225 ~kw 227 (755)
++-
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 883
No 145
>KOG0948|consensus
Probab=98.68 E-value=1.5e-07 Score=105.51 Aligned_cols=141 Identities=24% Similarity=0.310 Sum_probs=94.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E 223 (755)
.+|-|+|..+|.-+ .++..++...-+-.|||+.|=..+...++.. .+++.-.|--.+ +|=.+|
T Consensus 128 F~LDpFQ~~aI~Ci---------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------QRVIYTSPIKALSNQKYRE 191 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI---------DRGESVLVSAHTSAGKTVVAEYAIAMSLREK-------QRVIYTSPIKALSNQKYRE 191 (1041)
T ss_pred cccCchHhhhhhhh---------cCCceEEEEeecCCCcchHHHHHHHHHHHhc-------CeEEeeChhhhhcchhHHH
Confidence 47889999998644 6778899999999999999887776666554 357888888555 455677
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh----hhhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA----SVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~----~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+..=++. +..+..+-. ..+....+|+|-|.+|... +.+. ....||+||.|+++...
T Consensus 192 l~~EF~D-VGLMTGDVT-----------------InP~ASCLVMTTEILRsMLYRGSEvmr--EVaWVIFDEIHYMRDkE 251 (1041)
T KOG0948|consen 192 LLEEFKD-VGLMTGDVT-----------------INPDASCLVMTTEILRSMLYRGSEVMR--EVAWVIFDEIHYMRDKE 251 (1041)
T ss_pred HHHHhcc-cceeeccee-----------------eCCCCceeeeHHHHHHHHHhccchHhh--eeeeEEeeeehhccccc
Confidence 7765553 222221110 1244579999999998754 2333 45569999999998754
Q ss_pred cHH-HHH-HHcc-ccccEEEeecCC
Q psy5647 300 SQT-YQA-LMGL-KAKRRVLLSGTP 321 (755)
Q Consensus 300 s~~-~~a-l~~l-~~~~rllLTGTP 321 (755)
... |.- +.-+ ..-+-+.||||-
T Consensus 252 RGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 252 RGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred cceeeeeeEEeccccceEEEEeccC
Confidence 221 111 1122 455669999993
No 146
>KOG0949|consensus
Probab=98.61 E-value=4.2e-06 Score=96.64 Aligned_cols=159 Identities=20% Similarity=0.229 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKW 227 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw 227 (755)
.+|++-+.-+ ..+..+++...+-.|||..+--.+...++.... +-++.|+|+ +++.|=..++..-
T Consensus 514 ~WQ~elLDsv---------Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~-----~VVIyvaPtKaLVnQvsa~VyaR 579 (1330)
T KOG0949|consen 514 EWQRELLDSV---------DRNESAVIVAPTSAGKTFISFYAIEKVLRESDS-----DVVIYVAPTKALVNQVSANVYAR 579 (1330)
T ss_pred HHHHHHhhhh---------hcccceEEEeeccCCceeccHHHHHHHHhhcCC-----CEEEEecchHHHhhhhhHHHHHh
Confidence 4788766432 456788889999999999999999999887653 457889999 7888877776554
Q ss_pred hCC--CceEEEecCCCHHHHHHHHHHHHHHhCC-CCCCCEEEEehhhHhhhhhh--hh---cCCccEEEEeCCcccCCCc
Q psy5647 228 LGG--RVAALPIDGGSKAEIDNKLNSFMQTYGR-RPVNPILVISYETFRSHASV--LH---KNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~VlI~sye~l~~~~~~--l~---~~~~~lvIiDEaH~lKn~~ 299 (755)
+.. -..-+.+ +-.+...+.. .-..+|+||-.+.+....-. .. -....+||+||.|.+.|..
T Consensus 580 F~~~t~~rg~sl-----------~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~e 648 (1330)
T KOG0949|consen 580 FDTKTFLRGVSL-----------LGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEE 648 (1330)
T ss_pred hccCccccchhh-----------HhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccc
Confidence 321 0011111 1111111111 12357999999988754321 11 1256899999999999875
Q ss_pred -cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhh
Q psy5647 300 -SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVH 334 (755)
Q Consensus 300 -s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~ 334 (755)
+..+..+.-+-.--.++||||- +++..++..++
T Consensus 649 d~l~~Eqll~li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 649 DGLLWEQLLLLIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred cchHHHHHHHhcCCCeeEEeccc--CCHHHHHHHHH
Confidence 6666666666666679999994 77777777666
No 147
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.61 E-value=3.9e-06 Score=102.86 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCC--cEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCC--CEE
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGY--KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA--NRL 588 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~--~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a--~~v 588 (755)
.+.+++|+..+..++..+...|..... .+..+.-+++...|.+++++|+.+.+. +|+.+.+..+|+|+++. ..|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~--iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA--ILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe--EEEecCcccCccccCCCceEEE
Confidence 345777777777888877777765422 122333223334578999999975443 56677889999999864 788
Q ss_pred EEeCCCC-CCC
Q psy5647 589 VMFDPDW-NPA 598 (755)
Q Consensus 589 I~~D~~W-Np~ 598 (755)
|+.-.|+ +|.
T Consensus 829 iI~kLPF~~p~ 839 (928)
T PRK08074 829 VIVRLPFAPPD 839 (928)
T ss_pred EEecCCCCCCC
Confidence 8888787 454
No 148
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.3e-05 Score=93.48 Aligned_cols=154 Identities=19% Similarity=0.289 Sum_probs=105.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|-+-|..++..+.... .+..-.+|.--+|+|||-.-+-++...+.+|. .+||++|- ++..|-.+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-----~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-----GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred cccCHHHHHHHHHHHHhc-----ccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-------EEEEEeccccchHHHHHH
Confidence 478899999999887653 23466899999999999999999999999884 48999999 899999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcc--cCCCccH
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR--LKNCESQ 301 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~--lKn~~s~ 301 (755)
|..-++..+. .++++-.. .++...|..... ....|+|=+-..+-. .-.+.++||+||=|- +|..+.-
T Consensus 265 f~~rFg~~v~--vlHS~Ls~--~er~~~W~~~~~--G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq~~~p 333 (730)
T COG1198 265 FKARFGAKVA--VLHSGLSP--GERYRVWRRARR--GEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEDGP 333 (730)
T ss_pred HHHHhCCChh--hhcccCCh--HHHHHHHHHHhc--CCceEEEEechhhcC-----chhhccEEEEeccccccccCCcCC
Confidence 9998885433 33333211 123344444332 345688877765522 123468999999996 3544433
Q ss_pred HHHH--H----HccccccEEEeecCC
Q psy5647 302 TYQA--L----MGLKAKRRVLLSGTP 321 (755)
Q Consensus 302 ~~~a--l----~~l~~~~rllLTGTP 321 (755)
+|.| + .....-..|+=||||
T Consensus 334 rYhARdvA~~Ra~~~~~pvvLgSATP 359 (730)
T COG1198 334 RYHARDVAVLRAKKENAPVVLGSATP 359 (730)
T ss_pred CcCHHHHHHHHHHHhCCCEEEecCCC
Confidence 3332 1 122345568889999
No 149
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.59 E-value=5.2e-05 Score=87.82 Aligned_cols=96 Identities=11% Similarity=0.175 Sum_probs=63.8
Q ss_pred HHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHHHHHHccC--CCceEEEeecCCcc
Q psy5647 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR-GYKYVRLDGSMTIKKRAKVVETFNKT--SNEFIFMLSSKAGG 577 (755)
Q Consensus 501 ~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~-g~~~~~ldG~~~~~~R~~~v~~Fn~~--~~~~v~LlSt~agg 577 (755)
+.+.+...+....|.-.|+|+.|..+-. +...+... .++ +.+.|..+ .|..++++|... ....-+|+.|.+..
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~-~~~~l~~~l~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfw 533 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISA-IGQLVELGIPAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAW 533 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHH-HHHHHHhhcCCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccc
Confidence 4455566666666777777877776544 44444332 333 44556432 567899999874 22224788899999
Q ss_pred ccccc----------CCCCEEEEeCCCCCCCcH
Q psy5647 578 CGLNL----------IGANRLVMFDPDWNPAND 600 (755)
Q Consensus 578 ~GLNL----------~~a~~vI~~D~~WNp~~~ 600 (755)
+|+|+ ...+.||+.-.|+-|..-
T Consensus 534 eGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 534 TGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred cccccCCccCCCCCCCcccEEEEEeCCCCcCCh
Confidence 99999 348889999999887433
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.50 E-value=4e-05 Score=89.98 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCC-CHHHHHHHHHHHccCCCceEEEeec
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSM-TIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~-~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
...|...+..-+.... ..|..|||-+.+...-+.|..+|...|+++..+.... ...+=.++|.+ .+.. ..+-++|
T Consensus 406 ~~~K~~AI~~ei~~~~-~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~-G~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMH-QTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRK-GSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHH-hcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCC-CcEEEec
Confidence 3456554444333333 4589999999999999999999999999999999873 22344456655 2222 2467899
Q ss_pred CCccccccc
Q psy5647 574 KAGGCGLNL 582 (755)
Q Consensus 574 ~agg~GLNL 582 (755)
..+|.|.++
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999775
No 151
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.47 E-value=0.0001 Score=86.37 Aligned_cols=131 Identities=19% Similarity=0.239 Sum_probs=91.0
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
.+..+...|+--.+.+ +. +..-.|+| ++|+|||.-.+.+...+..+| ++++||+|+ .|+.|-.
T Consensus 79 ~G~~~ws~QR~WakR~---~r-----g~SFaiiA-PTGvGKTTfg~~~sl~~a~kg-------kr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 79 TGFRPWSAQRVWAKRL---VR-----GKSFAIIA-PTGVGKTTFGLLMSLYLAKKG-------KRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred hCCCchHHHHHHHHHH---Hc-----CCceEEEc-CCCCchhHHHHHHHHHHHhcC-------CeEEEEecCHHHHHHHH
Confidence 3457778888655444 22 23334554 999999987777666665554 568999999 6668888
Q ss_pred HHHHHHhCC----CceEEEecCCC-HHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCccc
Q psy5647 222 NEITKWLGG----RVAALPIDGGS-KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 222 ~E~~kw~~~----~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~l 295 (755)
+-+.++... .+..+ +++.- ..+..+.++.+.. ..++|+|+|-..+.++.+.|.+.+||+|++|...-+
T Consensus 143 ~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~-----gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIES-----GDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred HHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhc-----CCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 888888742 22233 45542 3333344444322 468999999999999999999999999999998754
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.46 E-value=1.2e-05 Score=97.04 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCC--CCEEEE
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIG--ANRLVM 590 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~--a~~vI~ 590 (755)
.+.+++|+..+..+++.+...|....+.. ...|... .|.+++++|+.+++. +|+.+....+|+|+++ +..||+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~--vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ--ILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe--EEEecchhhCCCCCCCCCeEEEEE
Confidence 35678887777888888888777655544 5556432 356799999874443 6677789999999963 455677
Q ss_pred eCCCC
Q psy5647 591 FDPDW 595 (755)
Q Consensus 591 ~D~~W 595 (755)
.-.|+
T Consensus 721 ~kLPF 725 (820)
T PRK07246 721 TRLPF 725 (820)
T ss_pred ecCCC
Confidence 66554
No 153
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.42 E-value=1.9e-06 Score=79.76 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=69.8
Q ss_pred cCeEEEcCCCCcHHHHHHH-HHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCIT-LMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIa-ll~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l 249 (755)
.--+|-.-.|.|||...+- ++...+.++ .++||+.|+-++ .+|+.+.+.+.-..+...-...
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-------~rvLvL~PTRvv---a~em~~aL~~~~~~~~t~~~~~------- 67 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRR-------LRVLVLAPTRVV---AEEMYEALKGLPVRFHTNARMR------- 67 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT---------EEEEESSHHH---HHHHHHHTTTSSEEEESTTSS--------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHcc-------CeEEEecccHHH---HHHHHHHHhcCCcccCceeeec-------
Confidence 3457788899999998665 444455544 469999999766 4666666665221111110000
Q ss_pred HHHHHHhCCCCCCCEEEEehhhHhhhh-hhhhcCCccEEEEeCCcccCCCccHHHHH-HHcc---ccccEEEeecCC
Q psy5647 250 NSFMQTYGRRPVNPILVISYETFRSHA-SVLHKNEVGLVLCDEGHRLKNCESQTYQA-LMGL---KAKRRVLLSGTP 321 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~sye~l~~~~-~~l~~~~~~lvIiDEaH~lKn~~s~~~~a-l~~l---~~~~rllLTGTP 321 (755)
. . .....|-+++|.++.... ......+|++|||||||-. ++.|-.... +..+ .....|++||||
T Consensus 68 ~----~---~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 68 T----H---FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp ----------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred c----c---cCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 0 0 123468999999987543 3333468999999999984 222322222 2222 223689999999
No 154
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.40 E-value=1.2e-05 Score=95.09 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=80.3
Q ss_pred CCCEEEEEEechhHHHHHHHHHHh----cCCcEEEEcCCCCHHHHHHHHHHHccCCCc-eEEEeecCCcccccccCCCCE
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKL----RGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANR 587 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~----~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~-~v~LlSt~agg~GLNL~~a~~ 587 (755)
...-++||-.-...++...+.|.. ....++-++|..+.++..+ -|+..+.. +-+++||..+.++|++.+...
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 456889998888888877777776 3577889999999888776 46663333 447899999999999999888
Q ss_pred EEE--------eCCCC----------CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHH
Q psy5647 588 LVM--------FDPDW----------NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628 (755)
Q Consensus 588 vI~--------~D~~W----------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiE 628 (755)
||= ||+-- +-+.-.||.||++| +.+=..|||.+++..+
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 762 32221 23455667776666 5567789999986655
No 155
>KOG0950|consensus
Probab=98.38 E-value=1.1e-05 Score=93.68 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=92.4
Q ss_pred HHHHHHHHHH----HHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHH-HHHcCCCCCCCCCeEEEEeCCcchHhH-HH
Q psy5647 149 PHQREGVKFM----YECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT-LLRQGPLAKPLIDKAIIVAPSSLVKNW-CN 222 (755)
Q Consensus 149 phQ~egv~~l----~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~-l~~~~~~~~p~~~~~LIV~P~sll~nW-~~ 222 (755)
-++..|+.-| .+|+.-.+..++.++|.+.+++.|||+.+=.++.. ++... +.++.+.|--.+.+= ..
T Consensus 215 ~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-------r~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 215 YAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-------RNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-------hceeEecceeehhHHHHh
Confidence 3566666533 34555445567889999999999999988766543 33332 347888888554433 33
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhc----CCccEEEEeCCcccCC
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK----NEVGLVLCDEGHRLKN 297 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~----~~~~lvIiDEaH~lKn 297 (755)
++..+.-. .+.+-.+.|...... .+....|.|+|.|+-......+.. ...++||+||-|.+..
T Consensus 288 ~l~~~~~~~G~~ve~y~g~~~p~~------------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 288 ALSPFSIDLGFPVEEYAGRFPPEK------------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hhhhhccccCCcchhhcccCCCCC------------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 33333221 233333333322111 112346999999988776655433 2467999999999854
Q ss_pred Cc--cHH----HHHHHcccc--ccEEEeecCCCcCCH
Q psy5647 298 CE--SQT----YQALMGLKA--KRRVLLSGTPIQNDL 326 (755)
Q Consensus 298 ~~--s~~----~~al~~l~~--~~rllLTGTPiqN~l 326 (755)
.. .-. ++.+..-.. -..|++|||--.|.+
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~l 392 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNNSL 392 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCChHH
Confidence 32 221 222221122 247999999755543
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.37 E-value=0.00013 Score=86.73 Aligned_cols=78 Identities=13% Similarity=0.208 Sum_probs=51.9
Q ss_pred CEEEEEEechhHHHHHHHHHHhc-CCcEEEEcCCCCHHHHHHHHHHHccC--CCceEEEeecCCcccccccCC--CCEEE
Q psy5647 515 DKIVLVSNYTQTLDLFERLSKLR-GYKYVRLDGSMTIKKRAKVVETFNKT--SNEFIFMLSSKAGGCGLNLIG--ANRLV 589 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~l~~~L~~~-g~~~~~ldG~~~~~~R~~~v~~Fn~~--~~~~v~LlSt~agg~GLNL~~--a~~vI 589 (755)
..++||..+-..++.+...|... ++. +...|. ..|.+++++|.+. ....-+|+.+....+|||+.+ +..||
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 34677776777777777777643 443 344564 2577889878641 122235666788999999975 78889
Q ss_pred EeCCCCC
Q psy5647 590 MFDPDWN 596 (755)
Q Consensus 590 ~~D~~WN 596 (755)
+.-.|+-
T Consensus 611 I~kLPF~ 617 (697)
T PRK11747 611 ITKIPFA 617 (697)
T ss_pred EEcCCCC
Confidence 9887773
No 157
>KOG0922|consensus
Probab=98.35 E-value=4.9e-05 Score=85.55 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=82.5
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhc----CC----cEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLR----GY----KYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLI 583 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~----g~----~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~ 583 (755)
+..-+|||-...+.++...+.|.+. +- -+.-+.|+++.++..++ |.. ..+.+-+++||..+.+.|.+.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEec
Confidence 3457899988888888777777654 21 24678999998776544 665 446777889999999999999
Q ss_pred CCCEEE--------EeCCCC-------CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 584 GANRLV--------MFDPDW-------NPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 584 ~a~~vI--------~~D~~W-------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
|...|| .|+|.- -|..-.||.-|++|.|.+.+..+|||.++.-.
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 988775 233311 12355677788888888889999999998766
No 158
>KOG0329|consensus
Probab=98.34 E-value=9.3e-06 Score=80.64 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
..|-..|..+|..+. =..|+||..+.+-+. |+ . - +++|..
T Consensus 268 ~eKNrkl~dLLd~Le---FNQVvIFvKsv~Rl~-------------------------------f~----k-r-~vat~l 307 (387)
T KOG0329|consen 268 NEKNRKLNDLLDVLE---FNQVVIFVKSVQRLS-------------------------------FQ----K-R-LVATDL 307 (387)
T ss_pred hhhhhhhhhhhhhhh---hcceeEeeehhhhhh-------------------------------hh----h-h-hHHhhh
Confidence 455566667776664 358999988765411 31 1 1 678899
Q ss_pred cccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
.|.|+++-+.|.++.||.|-.+..|..+.||++|.|.+-
T Consensus 308 fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 308 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 999999999999999999999999999999999999754
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.34 E-value=2e-05 Score=91.37 Aligned_cols=113 Identities=15% Similarity=0.232 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
+.....+..|+..+. .|++|.|||......+++++++...+.++..++|..+..+ ++.| .+..| ++=|.+
T Consensus 266 ~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~V-viYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDV-VIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeE-EEEece
Confidence 334446666777765 5899999999999999999999999999999988766542 2333 34444 455667
Q ss_pred cccccccC--CCCEEEEe--CCCCCCCc--HHHHhHhhhccCCCCcEEEE
Q psy5647 576 GGCGLNLI--GANRLVMF--DPDWNPAN--DDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 576 gg~GLNL~--~a~~vI~~--D~~WNp~~--~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
.++|+++. --+.|..| ....-|.. ..|.+||+-.++. +.++||
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 89999984 34555555 33333443 5899999987764 456665
No 160
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.28 E-value=0.00027 Score=83.10 Aligned_cols=85 Identities=13% Similarity=0.202 Sum_probs=61.5
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCC-CCHHHHHHHHHHHccCCCceEEEee
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGS-MTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~-~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
....|...+.+-+..+. ..|..|||-+.+...-+.|..+|...|+++..+... ....+=.++|.+= +... .+-++
T Consensus 420 t~~~K~~Ai~~ei~~~~-~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~G-aVTIA 495 (939)
T PRK12902 420 TEIAKWRAVANETAEMH-KQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKG-AVTIA 495 (939)
T ss_pred CHHHHHHHHHHHHHHHH-hCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCC-cEEEe
Confidence 34567666655555554 358999999999999999999999999999999886 3334444566542 2222 35688
Q ss_pred cCCccccccc
Q psy5647 573 SKAGGCGLNL 582 (755)
Q Consensus 573 t~agg~GLNL 582 (755)
|..+|.|-++
T Consensus 496 TNMAGRGTDI 505 (939)
T PRK12902 496 TNMAGRGTDI 505 (939)
T ss_pred ccCCCCCcCE
Confidence 8888888664
No 161
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.27 E-value=1.4e-06 Score=90.28 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=74.5
Q ss_pred HHHHHHccCCCceEEEeecCCcccccccCCC-------CEE-EEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC-
Q psy5647 555 KVVETFNKTSNEFIFMLSSKAGGCGLNLIGA-------NRL-VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG- 625 (755)
Q Consensus 555 ~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a-------~~v-I~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g- 625 (755)
...+.|+++... |+++ +.||++||.|++- .|| |.++++|+....+|.+||+||-||..+. +|++++.+
T Consensus 52 ~e~~~F~~g~k~-v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P-~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD-VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP-EYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce-EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC-EEEEeecCC
Confidence 456789987654 5555 5999999999842 344 6799999999999999999999999874 45566555
Q ss_pred CHHHHHHHHHHHHHHhHhhhhCCchh
Q psy5647 626 SIEEKMMQRQAHKKALSSCVVDCEED 651 (755)
Q Consensus 626 TiEEkI~~r~~~K~~l~~~vv~~~~~ 651 (755)
..|.+......+|..-..+...++..
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr~ 154 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDRR 154 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCccc
Confidence 57888888888898888888776544
No 162
>KOG0349|consensus
Probab=98.22 E-value=4e-06 Score=88.72 Aligned_cols=103 Identities=23% Similarity=0.352 Sum_probs=91.2
Q ss_pred HHHHhccCCCEEEEEEechhHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCccccccc
Q psy5647 506 LAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG---YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNL 582 (755)
Q Consensus 506 L~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g---~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL 582 (755)
+..++...-+|.||||...+-.|-|++++.++| |..+.++|.-.+.+|.+-++.|....- -||++|+++..||++
T Consensus 497 v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dv--kflictdvaargldi 574 (725)
T KOG0349|consen 497 VVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDV--KFLICTDVAARGLDI 574 (725)
T ss_pred hhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCe--EEEEEehhhhccccc
Confidence 344445567899999999999999999999874 678899999999999999999986433 499999999999999
Q ss_pred CCCCEEEEeCCCCCCCcHHHHhHhhhcc
Q psy5647 583 IGANRLVMFDPDWNPANDDQAMARVWRD 610 (755)
Q Consensus 583 ~~a~~vI~~D~~WNp~~~~Qa~gR~~R~ 610 (755)
++.-.+|....|-.-.+|..|+||++|.
T Consensus 575 ~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 575 TGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred cCCceEEEEecCcccchhhhhhhccchh
Confidence 9999999999999999999999998884
No 163
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.19 E-value=0.00021 Score=85.00 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
...|...+..-+..+. ..|..|||-+.+...-+.|.++|...|++.-.|....... =.++|.+= +.. -.+-++|.
T Consensus 610 ~~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~-EAeIVA~A--G~~-GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQK-EAEIVAEA--GQP-GTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhh-HHHHHHhc--CCC-CcEEEecc
Confidence 3566665555555555 3689999999999999999999999999988887764322 23455433 222 24678999
Q ss_pred CcccccccC--------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 575 AGGCGLNLI--------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 575 agg~GLNL~--------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
.+|.|-++. |.=+||.-..+-|...+.|..||++|.|..-....
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 999998875 67789999999999999999999999998855433
No 164
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.09 E-value=0.0014 Score=78.59 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=34.5
Q ss_pred CceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 565 NEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 565 ~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
+..+++++|.+...|+++- .+.+|- |+. .-...+|++||++|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCC
Confidence 3447889999999999986 444432 221 3456899999999999864
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.07 E-value=4.2e-05 Score=81.27 Aligned_cols=76 Identities=25% Similarity=0.195 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
..||.|++-+..+++.+. .+..+|+-.++|+|||+..+..+.......+...+ ..++++++++ ++..+=..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~-----~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~-~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 8 EPYPIQYEFMEELKRVLD-----RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQ-KIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHH-----cCCcEEEECCCCcchhHHHHHHHHHHHHhCccccc-ccceeEEeccHHHHHHHHHHH
Confidence 348999999999998873 55678899999999999999877554443322100 1256777777 4445555666
Q ss_pred HHH
Q psy5647 225 TKW 227 (755)
Q Consensus 225 ~kw 227 (755)
++.
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 655
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.07 E-value=4.2e-05 Score=81.27 Aligned_cols=76 Identities=25% Similarity=0.195 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
..||.|++-+..+++.+. .+..+|+-.++|+|||+..+..+.......+...+ ..++++++++ ++..+=..++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~-----~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~-~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 8 EPYPIQYEFMEELKRVLD-----RGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQ-KIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCHHHHHHHHHHHHHHH-----cCCcEEEECCCCcchhHHHHHHHHHHHHhCccccc-ccceeEEeccHHHHHHHHHHH
Confidence 348999999999998873 55678899999999999999877554443322100 1256777777 4445555666
Q ss_pred HHH
Q psy5647 225 TKW 227 (755)
Q Consensus 225 ~kw 227 (755)
++.
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 655
No 167
>PF08658 Rad54_N: Rad54 N terminal; InterPro: IPR013967 This is the N-terminal of the DNA repair protein Rad54 []. Rad54 functions in the recombinational DNA repair (RAD52) pathway. It dissociates RAD51 from nucleoprotein filaments formed on dsDNA and could be involved in the turnover of RAD51 protein-dsDNA filaments. Deficient mice also show significantly shorter telomeres than wild-type controls, indicating that the protein activity plays an essential role in telomere length maintenance in mammals. Non-homologous end joining (NHEJ) and homologous recombination (HR) represent the two major pathways of DNA double-strand break (DSB) repair in eukaryotic cells. LIG4 and RAD54L cooperate to support cellular proliferation, repair spontaneous DSBs, and prevent chromosome and single chromatid aberrations [, ]. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1Z3I_X.
Probab=97.94 E-value=2.6e-06 Score=82.98 Aligned_cols=58 Identities=41% Similarity=0.660 Sum_probs=14.0
Q ss_pred hhHHHHHHHHhcCCCCCCc-----CCCCCCCCCcccccccccc--ccccCCCCCCCCcccccCCCC
Q psy5647 61 SEHENLIRQILAKPFKVPI-----LNYTGGGYSTKALGVRREG--ARKALHDPTAPNALVLYTPPQ 119 (755)
Q Consensus 61 ~~~~~~~~~~~~~~f~~p~-----~~~~~~~~~~~~~~~~~~~--~~~~~~dp~~~~~lv~~~p~~ 119 (755)
+.++..+..+|+++|+||+ .+|.. ......||+++.. .++|||||..+.|+|||.|..
T Consensus 75 ~~~~~~~~~~l~k~F~vP~~~~~~~~y~~-~~~~~~LG~r~~~~~~~rpLHDP~~e~AiVLydPtV 139 (196)
T PF08658_consen 75 VFKEKDIETVLRKPFSVPIINKKSGNYIP-SRPPPTLGMRRGAIFVPRPLHDPSGEFAIVLYDPTV 139 (196)
T ss_dssp --------------------------------------SS-SS--S---SS-TTSTT--EEE----
T ss_pred ccccCCHHHHcCCCCCCceecccccccCC-CCCCCCCccccCCCCCCCCCCCCCCCCEEEEECCCC
Confidence 5678889999999999999 55555 2366899999886 599999999999999999964
No 168
>KOG0953|consensus
Probab=97.89 E-value=3.2e-05 Score=84.87 Aligned_cols=111 Identities=25% Similarity=0.269 Sum_probs=83.6
Q ss_pred HHHHHHHHHhc-cCCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCccc
Q psy5647 501 VLDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGC 578 (755)
Q Consensus 501 ~L~~lL~~~~~-~~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~ 578 (755)
+.+.++..+.. .+|+.||-||... +-.+...++.+|.. .+.|.|+.++..|.+--..||+.++..-+|+.|+|.|-
T Consensus 344 v~~~~~~sl~nlk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGM 421 (700)
T KOG0953|consen 344 VEETALGSLSNLKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGM 421 (700)
T ss_pred ehhhhhhhhccCCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccc
Confidence 33334444332 3688988888632 22334445566655 99999999999999999999996666678899999999
Q ss_pred ccccCCCCEEEEeCCC---------CCCCcHHHHhHhhhccCCCC
Q psy5647 579 GLNLIGANRLVMFDPD---------WNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 579 GLNL~~a~~vI~~D~~---------WNp~~~~Qa~gR~~R~GQ~k 614 (755)
||||. ..||||++.- -.-....|-.||++|.|.+-
T Consensus 422 GLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 422 GLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred ccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 99997 8999999875 23345679999999998763
No 169
>KOG0920|consensus
Probab=97.80 E-value=0.00096 Score=79.33 Aligned_cols=123 Identities=14% Similarity=0.286 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHhccC-CCEEEEEEechhHHHHHHHHHHhc-------CCcEEEEcCCCCHHHHHHHHHHHcc-CCCce
Q psy5647 497 AKLMVLDTMLAVIKMTT-DDKIVLVSNYTQTLDLFERLSKLR-------GYKYVRLDGSMTIKKRAKVVETFNK-TSNEF 567 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~-~~KvlIFs~~~~~ld~l~~~L~~~-------g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~ 567 (755)
-+..++..++..+.... ...+|||-.....+..+.+.|... .+-+..++++++..+.+.+ |+. ..+.+
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 34455666777766543 568999999888777777766532 3557788999998776655 665 34445
Q ss_pred EEEeecCCcccccccCCCCEEE--------EeCCCC----------CCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 568 IFMLSSKAGGCGLNLIGANRLV--------MFDPDW----------NPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 568 v~LlSt~agg~GLNL~~a~~vI--------~~D~~W----------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
-++++|..+.+.|.+..+-.|| .|||.- +-++-.||.||++| ..+=..|+|++..
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 6889999999999998766554 344432 45677899998887 4556788888764
No 170
>KOG0924|consensus
Probab=97.78 E-value=0.00054 Score=76.95 Aligned_cols=103 Identities=19% Similarity=0.353 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEE--------eCC----------CCCCC
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVM--------FDP----------DWNPA 598 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~--------~D~----------~WNp~ 598 (755)
++.+.-|...++..-..++ |+. ..+.+-++++|..+.+.|.+.+...||= |.| +-+-+
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5667777777776554443 664 6667778899999999999998877763 222 12234
Q ss_pred cHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHH---HHHHHHhHhhhh
Q psy5647 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQR---QAHKKALSSCVV 646 (755)
Q Consensus 599 ~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r---~~~K~~l~~~vv 646 (755)
+-.||.||++| +.|-..||+.++.+....++.- -+...++.+.|+
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred cchhhccccCC---CCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 44555555555 6677899999998887776632 123344555543
No 171
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.75 E-value=0.0002 Score=82.44 Aligned_cols=138 Identities=23% Similarity=0.262 Sum_probs=91.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH----hH----HHHH-HHHhCC-CceEEEe
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK----NW----CNEI-TKWLGG-RVAALPI 237 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~----nW----~~E~-~kw~~~-~~~~~~~ 237 (755)
.+..++=+-+|+|+|||.+-+-.|..|.+.... -+++||||+..+. .- .+.| ...+.+ +...+.+
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~-----~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~ 146 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGL-----FKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIY 146 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCc-----eeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEee
Confidence 445567778999999999999999999887643 5689999995442 11 2223 333332 3444444
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh---hhhhhc-----CC---------------ccEEEEeCCcc
Q psy5647 238 DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH---ASVLHK-----NE---------------VGLVLCDEGHR 294 (755)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~---~~~l~~-----~~---------------~~lvIiDEaH~ 294 (755)
+.+. ... ..+......|++++.+.+.+. ...+.. .+ --.||+||-|+
T Consensus 147 ~~~~------~~~----~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~ 216 (985)
T COG3587 147 DEDI------EKF----KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHR 216 (985)
T ss_pred chHH------HHH----hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhh
Confidence 3111 011 122234567999999888765 322211 11 12799999999
Q ss_pred cCCCccHHHHHHHccccccEEEeecCC
Q psy5647 295 LKNCESQTYQALMGLKAKRRVLLSGTP 321 (755)
Q Consensus 295 lKn~~s~~~~al~~l~~~~rllLTGTP 321 (755)
+... .+++.++.+++.-..+=.+||=
T Consensus 217 f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 217 FLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred cccc-hHHHHHHHhhCceEEEEecccc
Confidence 9885 8999999999998888888883
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.74 E-value=0.00029 Score=71.92 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcC-eEEEcCCCCcHHHHHHHHHHHHHHcC-CCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYG-CIMADEMGLGKTLQCITLMWTLLRQG-PLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g-~ILADemGlGKTlqaIall~~l~~~~-~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
+|-+.|+++|..+. ...+ +++.-..|+|||.+..+++..+...- .......+++||++|+ ..+.+-..
T Consensus 1 ~ln~~Q~~Ai~~~~---------~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~ 71 (236)
T PF13086_consen 1 KLNESQREAIQSAL---------SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILE 71 (236)
T ss_dssp ---HHHHHHHHHHC---------TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---------cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHH
Confidence 47799999998763 3455 88899999999988888887773210 0001123568999999 56677666
Q ss_pred HHHH
Q psy5647 223 EITK 226 (755)
Q Consensus 223 E~~k 226 (755)
.+.+
T Consensus 72 ~l~~ 75 (236)
T PF13086_consen 72 RLKK 75 (236)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 6666
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.0013 Score=67.51 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=85.6
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
+-..|...+.++.+ ..-+++--+.|+|||+.|+++....+..+. .++++|+-|.--. .|...
T Consensus 60 ~n~~Q~~~l~al~~---------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-----~~kIiI~RP~v~~----ge~LG 121 (262)
T PRK10536 60 RNEAQAHYLKAIES---------KQLIFATGEAGCGKTWISAAKAAEALIHKD-----VDRIIVTRPVLQA----DEDLG 121 (262)
T ss_pred CCHHHHHHHHHHhc---------CCeEEEECCCCCCHHHHHHHHHHHHHhcCC-----eeEEEEeCCCCCc----hhhhC
Confidence 34678877776632 346778889999999999999986654432 3445555555322 35555
Q ss_pred HhCCCce--EEEecCCCHHHH-----HHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 227 WLGGRVA--ALPIDGGSKAEI-----DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 227 w~~~~~~--~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
|+|+... ...+-..--+.. ...+...... ....|-|.+...+|.. ...-++||+|||+++.-
T Consensus 122 fLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~----~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~-- 190 (262)
T PRK10536 122 FLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYCLRP----EIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA-- 190 (262)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHh----ccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--
Confidence 5554210 000000000000 0001111100 0123566655555432 12447999999999844
Q ss_pred cHHHHHHHccccccEEEeecCCCcCCH
Q psy5647 300 SQTYQALMGLKAKRRVLLSGTPIQNDL 326 (755)
Q Consensus 300 s~~~~al~~l~~~~rllLTGTPiqN~l 326 (755)
.+....+..+....+++++|-|-|.++
T Consensus 191 ~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 191 AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 455556677888999999999988663
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.48 E-value=0.002 Score=66.97 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=91.4
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch----H
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV----K 218 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll----~ 218 (755)
++..+++-|.-|+-.|. .|-|.=..+|=|||+++...+....-.| +++=||+.+.-+ .
T Consensus 74 ~g~~p~~vQll~~l~L~-----------~G~laEm~TGEGKTli~~l~a~~~AL~G-------~~V~vvT~NdyLA~RD~ 135 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALH-----------KGRLAEMKTGEGKTLIAALPAALNALQG-------KGVHVVTSNDYLAKRDA 135 (266)
T ss_dssp TS----HHHHHHHHHHH-----------TTSEEEESTTSHHHHHHHHHHHHHHTTS-------S-EEEEESSHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcc-----------cceeEEecCCCCcHHHHHHHHHHHHHhc-------CCcEEEeccHHHhhccH
Confidence 44556667877775542 3669999999999999976665554444 347888888655 4
Q ss_pred hHHHHHHHHhCCCceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh---------hhhhcCCccEEE
Q psy5647 219 NWCNEITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA---------SVLHKNEVGLVL 288 (755)
Q Consensus 219 nW~~E~~kw~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~---------~~l~~~~~~lvI 288 (755)
+|...|-++++- .+-.+..+.. +++..... .+|+.+|-..|.-+. ......+++++|
T Consensus 136 ~~~~~~y~~LGl--sv~~~~~~~~~~~r~~~Y~-----------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~i 202 (266)
T PF07517_consen 136 EEMRPFYEFLGL--SVGIITSDMSSEERREAYA-----------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAI 202 (266)
T ss_dssp HHHHHHHHHTT----EEEEETTTEHHHHHHHHH-----------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEE
T ss_pred HHHHHHHHHhhh--ccccCccccCHHHHHHHHh-----------CcccccccchhhHHHHHHHHhhccchhccCCCCEEE
Confidence 688888888885 3333434333 22222111 368888877765421 111235789999
Q ss_pred EeCCcccCCC------------------------ccHHHHHHHccccccEEEeecCCCcCCHHHHH
Q psy5647 289 CDEGHRLKNC------------------------ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYF 330 (755)
Q Consensus 289 iDEaH~lKn~------------------------~s~~~~al~~l~~~~rllLTGTPiqN~l~El~ 330 (755)
|||+.-+-=. .+-+++.+...- .+..+|||| ....-.|||
T Consensus 203 vDEvDs~LiDea~~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~~Y-~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 203 VDEVDSILIDEARTPLIISGAKEGLKITPESLTLASISYQNFFRLY-PKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp ECTHHHHTTTGCCSEEEEEEHHTTS----SEEEEEEEEHHHHHTTS-SEEEEEESS-TGGGHHHHH
T ss_pred EeccceEEEecCcccccccccccCCccCCCCeEEEEeehHHHHHhc-chheeeCCC-ChhhHhhcC
Confidence 9998754211 122333333332 237899999 666666665
No 175
>KOG0926|consensus
Probab=97.48 E-value=0.0015 Score=74.68 Aligned_cols=63 Identities=25% Similarity=0.500 Sum_probs=48.7
Q ss_pred HHcc-CCCceEEEeecCCcccccccCCCCEEEE--------e---------CCCC-CCCcHHHHhHhhhccCCCCcEEEE
Q psy5647 559 TFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVM--------F---------DPDW-NPANDDQAMARVWRDGQKKPCFVY 619 (755)
Q Consensus 559 ~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~--------~---------D~~W-Np~~~~Qa~gR~~R~GQ~k~V~Vy 619 (755)
-|.. ..+.+.++++|.++.+.|.+++...||= | .-+| +-+.-.||.||++|+|- -+.|
T Consensus 622 VF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHcY 698 (1172)
T KOG0926|consen 622 VFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHCY 698 (1172)
T ss_pred hccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Ccee
Confidence 3555 5567789999999999999999888862 3 3345 66778899999999885 4678
Q ss_pred EEeeC
Q psy5647 620 RFLST 624 (755)
Q Consensus 620 rlv~~ 624 (755)
||.+.
T Consensus 699 RLYSS 703 (1172)
T KOG0926|consen 699 RLYSS 703 (1172)
T ss_pred ehhhh
Confidence 88764
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.0064 Score=71.58 Aligned_cols=117 Identities=13% Similarity=0.150 Sum_probs=83.8
Q ss_pred hHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 492 ~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
......|+..+..-+.... ..|.+|||-+.+...-+.+.++|.+.|++...+.-.-. .|..-+-.+. +... .+-+
T Consensus 408 y~t~~~K~~Aiv~~I~~~~-~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g-aVTi 482 (822)
T COG0653 408 YKTEEEKFKAIVEDIKERH-EKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG-AVTI 482 (822)
T ss_pred ccchHHHHHHHHHHHHHHH-hcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC-cccc
Confidence 3445667766665555555 35899999999999999999999999999988887754 3333333332 2222 3558
Q ss_pred ecCCcccccccC-CCC----------EEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 572 SSKAGGCGLNLI-GAN----------RLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 572 St~agg~GLNL~-~a~----------~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
+|.-+|.|-++. +.+ +||=-.-.=+---+.|-.||++|.|-.
T Consensus 483 ATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 483 ATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 899999999984 443 455556666677788999999999943
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.40 E-value=0.0011 Score=66.24 Aligned_cols=147 Identities=20% Similarity=0.303 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw 227 (755)
-++|...+..+.+ ..-.++--..|+|||+.|++....++..+. .++++|+-|..-+..+ + -+
T Consensus 6 ~~~Q~~~~~al~~---------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-----~~kiii~Rp~v~~~~~---l-Gf 67 (205)
T PF02562_consen 6 NEEQKFALDALLN---------NDLVIVNGPAGTGKTFLALAAALELVKEGE-----YDKIIITRPPVEAGED---L-GF 67 (205)
T ss_dssp SHHHHHHHHHHHH----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS------SEEEEEE-S--TT--------S
T ss_pred CHHHHHHHHHHHh---------CCeEEEECCCCCcHHHHHHHHHHHHHHhCC-----CcEEEEEecCCCCccc---c-cc
Confidence 3789999988863 235778889999999999999998888764 3667888777533221 1 12
Q ss_pred hCCCceEEEecCCCHHHHH---------HHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCC
Q psy5647 228 LGGRVAALPIDGGSKAEID---------NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
+|+...-- +..- -.... ..++..+. ...|-+.+...+|-. .....+||+|||+++..
T Consensus 68 lpG~~~eK-~~p~-~~p~~d~l~~~~~~~~~~~~~~------~~~Ie~~~~~~iRGr-----t~~~~~iIvDEaQN~t~- 133 (205)
T PF02562_consen 68 LPGDLEEK-MEPY-LRPIYDALEELFGKEKLEELIQ------NGKIEIEPLAFIRGR-----TFDNAFIIVDEAQNLTP- 133 (205)
T ss_dssp S----------TT-THHHHHHHTTTS-TTCHHHHHH------TTSEEEEEGGGGTT-------B-SEEEEE-SGGG--H-
T ss_pred CCCCHHHH-HHHH-HHHHHHHHHHHhChHhHHHHhh------cCeEEEEehhhhcCc-----cccceEEEEecccCCCH-
Confidence 22210000 0000 00000 01111111 123666665555421 12357999999998733
Q ss_pred ccHHHHHHHccccccEEEeecCCCcCCHH
Q psy5647 299 ESQTYQALMGLKAKRRVLLSGTPIQNDLL 327 (755)
Q Consensus 299 ~s~~~~al~~l~~~~rllLTGTPiqN~l~ 327 (755)
.+.-..+.++....+++++|-|.|.+..
T Consensus 134 -~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 134 -EELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -HHHHHHHTTB-TT-EEEEEE--------
T ss_pred -HHHHHHHcccCCCcEEEEecCceeecCC
Confidence 3444456677788999999999887643
No 178
>KOG0923|consensus
Probab=97.36 E-value=0.0026 Score=71.54 Aligned_cols=124 Identities=18% Similarity=0.350 Sum_probs=73.9
Q ss_pred CEEEEEEechhHHHH----HHHHHHhcC-----CcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCC
Q psy5647 515 DKIVLVSNYTQTLDL----FERLSKLRG-----YKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIG 584 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~----l~~~L~~~g-----~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~ 584 (755)
.-+|||-.-.+.+.. |.+.++..| +-++-|....+.....++ |.. .++.+-+++.|..+.+.|.+.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 445565544443333 333333333 235667778876665544 555 4555667889999999999998
Q ss_pred CCEEEEeCCC------CCC--------------CcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHH---HHHHHHHh
Q psy5647 585 ANRLVMFDPD------WNP--------------ANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ---RQAHKKAL 641 (755)
Q Consensus 585 a~~vI~~D~~------WNp--------------~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~---r~~~K~~l 641 (755)
.+.|| ||- +|| +.-.||.||++|-|--| .|||.+.-+.+-.+-. =.+....|
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRLYt~~aY~~eLE~~t~PEIqRtnL 625 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRLYTAWAYEHELEEMTVPEIQRTNL 625 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEeechhhhhhhhccCCCcceeeccc
Confidence 88876 333 333 56779999888877544 6788875443322111 12334556
Q ss_pred Hhhhh
Q psy5647 642 SSCVV 646 (755)
Q Consensus 642 ~~~vv 646 (755)
.+.|+
T Consensus 626 ~nvVL 630 (902)
T KOG0923|consen 626 GNVVL 630 (902)
T ss_pred hhHHH
Confidence 66655
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.22 E-value=0.0046 Score=61.87 Aligned_cols=125 Identities=22% Similarity=0.247 Sum_probs=68.9
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
+|-+-|++++..++. .+.+-+++.-..|+|||...-.+...+...+ .++++++|+.-. ..++.
T Consensus 1 ~L~~~Q~~a~~~~l~-------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------~~v~~~apT~~A---a~~L~ 63 (196)
T PF13604_consen 1 TLNEEQREAVRAILT-------SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-------KRVIGLAPTNKA---AKELR 63 (196)
T ss_dssp -S-HHHHHHHHHHHH-------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---------EEEEESSHHH---HHHHH
T ss_pred CCCHHHHHHHHHHHh-------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-------CeEEEECCcHHH---HHHHH
Confidence 367899999998865 3444577888999999987766665555543 358999999533 22233
Q ss_pred HHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh------hcCCccEEEEeCCcccCCCc
Q psy5647 226 KWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL------HKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 226 kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l------~~~~~~lvIiDEaH~lKn~~ 299 (755)
+-.+. . ..|...+....... .....++||||||-.+-+.
T Consensus 64 ~~~~~--~--------------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~- 108 (196)
T PF13604_consen 64 EKTGI--E--------------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSR- 108 (196)
T ss_dssp HHHTS-----------------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHH-
T ss_pred HhhCc--c--------------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHH-
Confidence 22221 1 11111111111000 0235689999999987332
Q ss_pred cHHHHHHHccc-cccEEEeecCCCc
Q psy5647 300 SQTYQALMGLK-AKRRVLLSGTPIQ 323 (755)
Q Consensus 300 s~~~~al~~l~-~~~rllLTGTPiq 323 (755)
.....+..+. ...+++|.|-|-|
T Consensus 109 -~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 109 -QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp -HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred -HHHHHHHHHHhcCCEEEEECCcch
Confidence 2333333333 3679999999976
No 180
>KOG1803|consensus
Probab=97.18 E-value=0.0033 Score=70.50 Aligned_cols=67 Identities=24% Similarity=0.388 Sum_probs=52.1
Q ss_pred hhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc-hHhH
Q psy5647 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL-VKNW 220 (755)
Q Consensus 142 ~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl-l~nW 220 (755)
.+...|-+-|+.+|.+... ...=.++--+.|+|||.+.+-++..+..++ +++||.+|+.+ +.|-
T Consensus 181 ~~~~~ln~SQk~Av~~~~~--------~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------k~VLVcaPSn~AVdNi 245 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAIN--------NKDLLIIHGPPGTGKTRTLVEIISQLVKQK-------KRVLVCAPSNVAVDNI 245 (649)
T ss_pred cCCccccHHHHHHHHHHhc--------cCCceEeeCCCCCCceeeHHHHHHHHHHcC-------CeEEEEcCchHHHHHH
Confidence 3456788999999999854 223356667999999999999999999887 56899999954 5666
Q ss_pred HHH
Q psy5647 221 CNE 223 (755)
Q Consensus 221 ~~E 223 (755)
.+-
T Consensus 246 ver 248 (649)
T KOG1803|consen 246 VER 248 (649)
T ss_pred HHH
Confidence 553
No 181
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.14 E-value=0.0015 Score=60.35 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=65.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc-hHhHHHHHHHHhCCCceEEEecCCCHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL-VKNWCNEITKWLGGRVAALPIDGGSKAEIDNK 248 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl-l~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~ 248 (755)
.+-+++.-+.|+|||..+-.++..+........ ...-+.+-+|... ...+..++..-++..... ..+.......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cCCHHHHHHH
Confidence 445678889999999999999887764310000 1122455555544 445555555544421111 1222222222
Q ss_pred HHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHcc--ccccEEEeecCC
Q psy5647 249 LNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL--KAKRRVLLSGTP 321 (755)
Q Consensus 249 l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l--~~~~rllLTGTP 321 (755)
+. ..+......+||+||+|++. +......+..+ .....++|+|||
T Consensus 79 ~~--------------------------~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LI--------------------------DALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HH--------------------------HHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HH--------------------------HHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 22 22233334789999999984 24555555555 667789999999
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.12 E-value=0.0043 Score=62.59 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=77.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
-.|||-|.+-+..|.+. ..+.+.++-.-||-|||-..+=++..++..+. +=+-+|+|.+++.+-..-+
T Consensus 22 iliR~~Q~~ia~~mi~~------~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------~LvrviVpk~Ll~q~~~~L 89 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP------PSGKNSVMQLNMGEGKTSVIVPMLALALADGS------RLVRVIVPKALLEQMRQML 89 (229)
T ss_pred ceeeHHHHHHHHHHhCC------CCCCCeEeeecccCCccchHHHHHHHHHcCCC------cEEEEEcCHHHHHHHHHHH
Confidence 47999999999988652 45678899999999999988888877776653 2378999999999988888
Q ss_pred HHHhCC----CceEEEecCCCH--HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh
Q psy5647 225 TKWLGG----RVAALPIDGGSK--AEIDNKLNSFMQTYGRRPVNPILVISYETFRS 274 (755)
Q Consensus 225 ~kw~~~----~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~ 274 (755)
..-+++ ++..+..+-... ......+......-. ....|++++.|.+.+
T Consensus 90 ~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~--~~~gill~~PEhilS 143 (229)
T PF12340_consen 90 RSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECM--RSGGILLATPEHILS 143 (229)
T ss_pred HHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHH--HcCCEEEeChHHHHH
Confidence 776664 233333333222 122222222221110 123699999998764
No 183
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.89 E-value=0.0073 Score=71.13 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHHhCCCceEEEecCC-CHHHHHHHHHHHHHHh
Q psy5647 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGG-SKAEIDNKLNSFMQTY 256 (755)
Q Consensus 179 mGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 256 (755)
.|+|||-..+.++...+..|. .+||++|. ++..|+.+.|.+.++.. .+..++++ +..+ +.+.|....
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-------~vLvLvPEi~lt~q~~~rl~~~f~~~-~v~~lhS~l~~~~---R~~~w~~~~ 237 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-------GALVVVPDQRDVDRLEAALRALLGAG-DVAVLSAGLGPAD---RYRRWLAVL 237 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-------eEEEEecchhhHHHHHHHHHHHcCCC-cEEEECCCCCHHH---HHHHHHHHh
Confidence 499999999999999998874 48999999 88899999999999832 23334443 3332 334444432
Q ss_pred CCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCccc--CCCccHHHHH--HH----ccccccEEEeecCC
Q psy5647 257 GRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL--KNCESQTYQA--LM----GLKAKRRVLLSGTP 321 (755)
Q Consensus 257 ~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~l--Kn~~s~~~~a--l~----~l~~~~rllLTGTP 321 (755)
. ....|+|-|...+- +.-.+.++|||||=|.- |...+-.+.+ +. ....-..|+-|+||
T Consensus 238 ~--G~~~IViGtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 238 R--GQARVVVGTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred C--CCCcEEEEcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 2 34568888877652 12235789999999963 4333222221 11 12344567779999
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.86 E-value=0.0054 Score=67.28 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=30.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
+|+--..|+|||+.++.++..+..... ...++++|+...+.+...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~-----~~~~~~l~~n~~l~~~l~ 48 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEE-----GKKVLYLCGNHPLRNKLR 48 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhcccc-----CCceEEEEecchHHHHHH
Confidence 355567899999999999998821111 134688888866655433
No 185
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.83 E-value=0.021 Score=67.37 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=52.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~~E 223 (755)
..|-+.|+++|.+... .....++--..|+|||.++++++..+...+. ++|+++|+. .+.+..+.
T Consensus 156 ~~ln~~Q~~Av~~~l~--------~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-------~VLv~a~sn~Avd~l~e~ 220 (637)
T TIGR00376 156 PNLNESQKEAVSFALS--------SKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-------RVLVTAPSNIAVDNLLER 220 (637)
T ss_pred CCCCHHHHHHHHHHhc--------CCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-------CEEEEcCcHHHHHHHHHH
Confidence 4678999999988643 2345778889999999999999988887653 589999994 45677666
Q ss_pred HHH
Q psy5647 224 ITK 226 (755)
Q Consensus 224 ~~k 226 (755)
+.+
T Consensus 221 l~~ 223 (637)
T TIGR00376 221 LAL 223 (637)
T ss_pred HHh
Confidence 665
No 186
>KOG0925|consensus
Probab=96.71 E-value=0.027 Score=61.60 Aligned_cols=63 Identities=22% Similarity=0.400 Sum_probs=47.6
Q ss_pred CCceEEEeecCCcccccccCCCCEEEEeCCC------CC-----------CCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 564 SNEFIFMLSSKAGGCGLNLIGANRLVMFDPD------WN-----------PANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 564 ~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~------WN-----------p~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
...+-+++||..+...+.+.+.-.|| ||- +| |..-.||..|++|.|.+++-..+||.++..
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 388 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHh
Confidence 33455789999999999888765554 443 23 456678999999999999999999998755
Q ss_pred HH
Q psy5647 627 IE 628 (755)
Q Consensus 627 iE 628 (755)
.+
T Consensus 389 ~~ 390 (699)
T KOG0925|consen 389 FE 390 (699)
T ss_pred hh
Confidence 44
No 187
>KOG1131|consensus
Probab=96.71 E-value=0.024 Score=62.42 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
..+|.|.+-..-+...+ ..++.|+|-++.|+|||+.-++++..+....|.. .+-||-|...+
T Consensus 16 ~iYPEQ~~YM~elKrsL-----DakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~----~~KliYCSRTv 77 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSL-----DAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDE----HRKLIYCSRTV 77 (755)
T ss_pred ccCHHHHHHHHHHHHhh-----ccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcc----cceEEEecCcc
Confidence 67888865544444433 5677899999999999999999998887766642 22478887643
No 188
>PRK04296 thymidine kinase; Provisional
Probab=96.60 E-value=0.0075 Score=60.00 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=26.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
.++.-+||.|||..++.++..+...+ ++++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-------~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-------MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-------CeEEEEec
Confidence 36677999999999999988877654 34777766
No 189
>KOG1802|consensus
Probab=96.49 E-value=0.019 Score=64.84 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc-hHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL-VKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl-l~nW~~E~ 224 (755)
+|--.|..||+.++. ..=.|+--..|+|||++..++++.+.+++. .++||++|+.+ +.|-+.-|
T Consensus 410 kLN~SQ~~AV~~VL~---------rplsLIQGPPGTGKTvtsa~IVyhl~~~~~------~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQHA------GPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhchHHHHHHHHHHc---------CCceeeecCCCCCceehhHHHHHHHHHhcC------CceEEEcccchhHHHHHHHH
Confidence 566789999988754 334588889999999999999999998853 45899999954 67777777
Q ss_pred HHHhCCCceEEEecCCCH
Q psy5647 225 TKWLGGRVAALPIDGGSK 242 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~ 242 (755)
++- +++++.+...++
T Consensus 475 h~t---gLKVvRl~aksR 489 (935)
T KOG1802|consen 475 HKT---GLKVVRLCAKSR 489 (935)
T ss_pred Hhc---CceEeeeehhhh
Confidence 664 255555544433
No 190
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.39 E-value=0.0073 Score=58.74 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=54.3
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcC----CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC--CcccccccC--
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRG----YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK--AGGCGLNLI-- 583 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g----~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~--agg~GLNL~-- 583 (755)
..+++++||..+-..++.+.+.++..+ +.+. ..+ ..++.+++++|..+.+. +|+++. ...+|+|+.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCc
Confidence 346899999999999999998887653 3332 223 35788999999986554 566666 889999997
Q ss_pred CCCEEEEeCCCCCC
Q psy5647 584 GANRLVMFDPDWNP 597 (755)
Q Consensus 584 ~a~~vI~~D~~WNp 597 (755)
.+..||+.-.|+-+
T Consensus 81 ~~r~vii~glPfp~ 94 (167)
T PF13307_consen 81 LLRAVIIVGLPFPP 94 (167)
T ss_dssp SEEEEEEES-----
T ss_pred hhheeeecCCCCCC
Confidence 47889999888743
No 191
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.35 E-value=0.00086 Score=82.63 Aligned_cols=183 Identities=27% Similarity=0.386 Sum_probs=101.8
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCc--HHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLG--KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlG--KTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
....+.+||.....-.... ......++++.|+| ||+.+..+.......+. ..+.++++|..+..+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 148 (866)
T COG0553 81 SRFILIPHQLDIALEVLNE-------LALRVLIADEVGLGDLKTIEAGAILKELLLRGE-----IKRVLILVPKTLRAQW 148 (866)
T ss_pred cccccCcchhhhhhhhhhh-------hhhchhhcccccccccccccccccchHhhhhhh-----hccceeccchHHHHHH
Confidence 3456778887766543332 22337899999999 89998887766554442 3567999999999999
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh----hhhhhcCCc---cEEEEeCCc
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH----ASVLHKNEV---GLVLCDEGH 293 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~----~~~l~~~~~---~lvIiDEaH 293 (755)
..|...++..........+. . .....+.. .......+.++.+.+..+.. ...+....| +++++||+|
T Consensus 149 ~~e~~~~~~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (866)
T COG0553 149 VVELLEKFNIRLAVLDKEGL--R---YLLKQYDA-YNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAH 222 (866)
T ss_pred HHHhhhhccccchhhhhhhh--h---hhhhhhcc-cccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHh
Confidence 99987764432111111000 0 00000000 00000000033444443332 122333345 899999999
Q ss_pred ccCCCc---------cHHHHHHHcccc--------ccEEEeecCCCcCCHHHHHHhhhhhcCCCCCC
Q psy5647 294 RLKNCE---------SQTYQALMGLKA--------KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGT 343 (755)
Q Consensus 294 ~lKn~~---------s~~~~al~~l~~--------~~rllLTGTPiqN~l~El~sll~fl~p~~l~~ 343 (755)
...+.. ...+..+..... -....+++||......+++....+..+..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 223 NLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred hcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 987742 233333333311 12348899999988877776666666655444
No 192
>KOG1805|consensus
Probab=96.00 E-value=0.038 Score=65.22 Aligned_cols=159 Identities=19% Similarity=0.237 Sum_probs=92.0
Q ss_pred eeCchhhc----CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 138 VVDPVLSN----ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 138 ~v~p~l~~----~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
+++|.... .|-.-|+.|+...+.+ ..+..|+++ .|+|||-+..+++..|+..+ +++|+.+=
T Consensus 657 ~~~p~~~~~~~~~LN~dQr~A~~k~L~a-------edy~LI~GM-PGTGKTTtI~~LIkiL~~~g-------kkVLLtsy 721 (1100)
T KOG1805|consen 657 VLIPKIKKIILLRLNNDQRQALLKALAA-------EDYALILGM-PGTGKTTTISLLIKILVALG-------KKVLLTSY 721 (1100)
T ss_pred ccCchhhHHHHhhcCHHHHHHHHHHHhc-------cchheeecC-CCCCchhhHHHHHHHHHHcC-------CeEEEEeh
Confidence 34555555 7889999999877653 345555554 59999999999999998776 56888887
Q ss_pred C-cchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCCCEEEEehhhHhhhhhhhhc
Q psy5647 214 S-SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYG-----------RRPVNPILVISYETFRSHASVLHK 281 (755)
Q Consensus 214 ~-sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~VlI~sye~l~~~~~~l~~ 281 (755)
+ +.|.|-.--+.++ .+..+.+... ..+-..++++..... .-....||.+|--.+. ...+..
T Consensus 722 ThsAVDNILiKL~~~---~i~~lRLG~~--~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~ 794 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGF---GIYILRLGSE--EKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVN 794 (1100)
T ss_pred hhHHHHHHHHHHhcc---CcceeecCCc--cccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhc
Confidence 7 6677765444433 3333333222 111122222221000 0011234444443322 344556
Q ss_pred CCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 282 NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 282 ~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
..||++|+|||-.+--+ -++--+.-..+..|-|-+.|
T Consensus 795 R~FD~cIiDEASQI~lP-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILLP-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred cccCEEEEccccccccc-----hhhhhhhhcceEEEeccccc
Confidence 68999999999766332 12233445566677776655
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.92 E-value=0.064 Score=64.32 Aligned_cols=134 Identities=18% Similarity=0.185 Sum_probs=81.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...|-+-|++++..+. ..+-++|.-..|+|||..+-+++..+...++ ..++++++|+........|
T Consensus 321 ~~~l~~~Q~~Ai~~~~---------~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI---------QHKVVILTGGPGTGKTTITRAIIELAEELGG-----LLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHH---------hCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-----CceEEEEeCchHHHHHHHH
Confidence 4578899999998763 2346889999999999988777776655432 1357888999765544333
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHH
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~ 303 (755)
. ++.. .. .+..+..... .. . ...... .....++||||||+.+-. ....
T Consensus 387 ~---~g~~-----------a~---Tih~lL~~~~---~~--~------~~~~~~--~~~~~~llIvDEaSMvd~--~~~~ 434 (720)
T TIGR01448 387 V---TGLT-----------AS---TIHRLLGYGP---DT--F------RHNHLE--DPIDCDLLIVDESSMMDT--WLAL 434 (720)
T ss_pred h---cCCc-----------cc---cHHHHhhccC---Cc--c------chhhhh--ccccCCEEEEeccccCCH--HHHH
Confidence 2 1110 00 1111111100 00 0 000000 124578999999999843 2334
Q ss_pred HHHHccccccEEEeecCCCc
Q psy5647 304 QALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 304 ~al~~l~~~~rllLTGTPiq 323 (755)
..+..++...+++|-|=|-|
T Consensus 435 ~Ll~~~~~~~rlilvGD~~Q 454 (720)
T TIGR01448 435 SLLAALPDHARLLLVGDTDQ 454 (720)
T ss_pred HHHHhCCCCCEEEEECcccc
Confidence 45566777889999998866
No 194
>KOG4150|consensus
Probab=95.82 E-value=0.044 Score=60.80 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=93.0
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH----HHhcCC----cEEEEcCCCCHHHHHHHHHHHccCCCc
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL----SKLRGY----KYVRLDGSMTIKKRAKVVETFNKTSNE 566 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~----L~~~g~----~~~~ldG~~~~~~R~~~v~~Fn~~~~~ 566 (755)
.+.|+.-..+++..+- ..+-++|-||..+...+++-.. +.+-|- .+..+.|+.+.++|.++-...=.+.-
T Consensus 507 ~~~~i~E~s~~~~~~i-~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMV-QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHH-HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee-
Confidence 3555555556665554 3478999999999876665433 322222 24567899999999888655443333
Q ss_pred eEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHH
Q psy5647 567 FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630 (755)
Q Consensus 567 ~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEk 630 (755)
.-+++|.|...||++-+-+.|+....|.+-++..|-.||++|-.. ....|| .+..+.+|..
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk-~SLavy-va~~~PVDQ~ 645 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK-PSLAVY-VAFLGPVDQY 645 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC-CceEEE-EEeccchhhH
Confidence 467899999999999999999999999999999999999999643 233333 3444555543
No 195
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.70 E-value=0.11 Score=47.95 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
.+...++.-+.|.|||..+-.++..+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 456789999999999987777776664
No 196
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.54 E-value=0.063 Score=62.83 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=80.9
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw 227 (755)
-+.|++++.-.. ..+-+++.-..|+|||.++..++..+....... ..++++++|+.--.. .+.+-
T Consensus 154 ~d~Qk~Av~~a~---------~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~---~~~i~l~APTgkAA~---rL~e~ 218 (615)
T PRK10875 154 VDWQKVAAAVAL---------TRRISVISGGPGTGKTTTVAKLLAALIQLADGE---RCRIRLAAPTGKAAA---RLTES 218 (615)
T ss_pred CHHHHHHHHHHh---------cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCC---CcEEEEECCcHHHHH---HHHHH
Confidence 489999997653 345678999999999999998888876643211 135788899864432 22222
Q ss_pred hCCCceEEEecCCCHHH---HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHH
Q psy5647 228 LGGRVAALPIDGGSKAE---IDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~ 304 (755)
++.....+......... ....+..+.... +.. ..++.+ .-....+|+||||||..+- -...+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~~---~~~-------~~~~~~--~~~~l~~dvlIvDEaSMvd--~~lm~~ 284 (615)
T PRK10875 219 LGKALRQLPLTDEQKKRIPEEASTLHRLLGAQ---PGS-------QRLRYH--AGNPLHLDVLVVDEASMVD--LPMMAR 284 (615)
T ss_pred HHhhhhccccchhhhhcCCCchHHHHHHhCcC---CCc-------cchhhc--cccCCCCCeEEEChHhccc--HHHHHH
Confidence 21101000000000000 001111111110 000 001111 1122357999999999883 244556
Q ss_pred HHHccccccEEEeecCCCc
Q psy5647 305 ALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 305 al~~l~~~~rllLTGTPiq 323 (755)
.+..++...|++|-|=|-|
T Consensus 285 ll~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 285 LIDALPPHARVIFLGDRDQ 303 (615)
T ss_pred HHHhcccCCEEEEecchhh
Confidence 6777888899999998866
No 197
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.50 E-value=0.078 Score=61.85 Aligned_cols=146 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH-hHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK-NWCNEITKW 227 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~-nW~~E~~kw 227 (755)
+.|++++..... ..-++|.-..|+|||.++..++..+....+... ..++++++|+.--. ...+-+..-
T Consensus 148 ~~Qk~A~~~al~---------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~--~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALK---------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQG--KLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhh---------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccC--CCcEEEECCcHHHHHHHHHHHHhh
Confidence 789999887643 456789999999999999999888776554321 13589999985432 222222221
Q ss_pred hCCCceEEEecCCCHH---HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHH
Q psy5647 228 LGGRVAALPIDGGSKA---EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304 (755)
Q Consensus 228 ~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~ 304 (755)
.. .+ ........ .....+..+.... . .+ ..++.+. -....+|+||||||-.+-. ....+
T Consensus 217 ~~-~l---~~~~~~~~~~~~~a~TiHrlLg~~---~------~~-~~~~~~~--~~~l~~dvlIiDEaSMvd~--~l~~~ 278 (586)
T TIGR01447 217 VK-NL---AAAEALIAALPSEAVTIHRLLGIK---P------DT-KRFRHHE--RNPLPLDVLVVDEASMVDL--PLMAK 278 (586)
T ss_pred hc-cc---ccchhhhhccccccchhhhhhccc---C------Cc-chhhhcc--cCCCcccEEEEcccccCCH--HHHHH
Confidence 11 00 00000000 0000111111100 0 00 0111111 1123689999999998743 34555
Q ss_pred HHHccccccEEEeecCCCc
Q psy5647 305 ALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 305 al~~l~~~~rllLTGTPiq 323 (755)
.+..++...|++|.|=|-|
T Consensus 279 ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 279 LLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred HHHhcCCCCEEEEECChhh
Confidence 5667788889999998866
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.30 E-value=0.038 Score=58.87 Aligned_cols=146 Identities=18% Similarity=0.275 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHH-HHHcCCCCCCCCCeEEEEeCCcchHh--------H
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT-LLRQGPLAKPLIDKAIIVAPSSLVKN--------W 220 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~-l~~~~~~~~p~~~~~LIV~P~sll~n--------W 220 (755)
+|+-++..+.+ ....=+.|.-.-|+|||+-|+|.... .+.+.. .++++|-=|..-+.+ =
T Consensus 232 eQ~~ALdlLld-------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 232 EQRVALDLLLD-------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred HHHHHHHHhcC-------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCCch
Confidence 89988888765 44455778888999999999886543 333332 244555555544431 1
Q ss_pred HHHHHHHhCC---CceEEE-ecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC
Q psy5647 221 CNEITKWLGG---RVAALP-IDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 221 ~~E~~kw~~~---~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK 296 (755)
++-+.-|... ...++. .+... ...+...+... .-.|--.||=.=| .+.-.+||+|||+++-
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~----~~~l~~~l~~~----~iev~alt~IRGR-------Sl~~~FiIIDEaQNLT 364 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG----DRALEEILSRG----RIEVEALTYIRGR-------SLPDSFIIIDEAQNLT 364 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc----hHHHHHHHhcc----ceeeeeeeeeccc-------ccccceEEEehhhccC
Confidence 1112222221 000000 00000 11122211110 1112222222111 1233579999999984
Q ss_pred CCccHHHHHHHccccccEEEeecCCCcC
Q psy5647 297 NCESQTYQALMGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 297 n~~s~~~~al~~l~~~~rllLTGTPiqN 324 (755)
-. +.-..+.+.-..-+|.|||-|.|=
T Consensus 365 ph--eikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 365 PH--ELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred HH--HHHHHHHhccCCCEEEEcCCHHHc
Confidence 32 333345556677899999999774
No 199
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.13 E-value=0.075 Score=48.61 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.8
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...+|.-.+|+|||..+..++..+...+ ..++++.+......+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHH
Confidence 4678889999999999998887665443 236777777665554433
No 200
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.70 E-value=0.19 Score=56.60 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.|...+..+...+... .-....|+.-+.|+|||-.|..++..+....
T Consensus 22 GQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~ 68 (484)
T PRK14956 22 HQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCEN 68 (484)
T ss_pred ChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCccc
Confidence 3555555554444321 1122369999999999999999998876543
No 201
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.68 E-value=0.5 Score=49.44 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
+.+.+++..+...+. .+.+-++|.-+.|+|||..+-.++..+
T Consensus 26 ~~~~~~~~~l~~~~~----~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 26 KGHKRAMAYLEYGLS----QREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHHh----cCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 556667776654331 222336789999999998877765443
No 202
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.59 E-value=0.13 Score=53.76 Aligned_cols=29 Identities=21% Similarity=0.109 Sum_probs=23.7
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.+|.-+.|+|||..|-++...+...+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 45678999999999999998887775543
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.25 E-value=0.95 Score=47.82 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCC-C--CCCeE-EEEeCC-cchHhHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK-P--LIDKA-IIVAPS-SLVKNWCN 222 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~-p--~~~~~-LIV~P~-sll~nW~~ 222 (755)
+|.=.++++.|-+.+...+...-.+.+|.-+.|-|||..+=-|. +..+... + ..-|+ +|-+|+ .-......
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~----~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFR----RLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHH----HHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 35556677777665554333445778999999999997554443 3333211 1 11133 344454 44444555
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCccc-CCCccH
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL-KNCESQ 301 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~l-Kn~~s~ 301 (755)
.+..-++..... ........ ......+...+..++||||.|++ .+...+
T Consensus 115 ~IL~~lgaP~~~----~~~~~~~~--------------------------~~~~~llr~~~vrmLIIDE~H~lLaGs~~~ 164 (302)
T PF05621_consen 115 AILEALGAPYRP----RDRVAKLE--------------------------QQVLRLLRRLGVRMLIIDEFHNLLAGSYRK 164 (302)
T ss_pred HHHHHhCcccCC----CCCHHHHH--------------------------HHHHHHHHHcCCcEEEeechHHHhcccHHH
Confidence 554443321110 00111111 11224556678999999999996 443344
Q ss_pred HHHHH---Hcccc--ccEEEeecCC
Q psy5647 302 TYQAL---MGLKA--KRRVLLSGTP 321 (755)
Q Consensus 302 ~~~al---~~l~~--~~rllLTGTP 321 (755)
.-..+ +.|.. +--+.+.||+
T Consensus 165 qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 165 QREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHHhhccCCCeEEeccH
Confidence 33333 33322 3336677876
No 204
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.21 E-value=0.29 Score=49.81 Aligned_cols=30 Identities=13% Similarity=-0.046 Sum_probs=24.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
......+|--+.|+|||..+.++.......
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~ 65 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEER 65 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345678899999999999999988776644
No 205
>PRK06526 transposase; Provisional
Probab=94.10 E-value=0.28 Score=51.04 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=26.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.+.+|.-..|+|||..+.++...+...+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 4567899999999999999999998887765
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.03 E-value=0.53 Score=48.65 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+.|..++..+.+...+.. .+..|.+|.-..|+|||..+.+++..+...+
T Consensus 79 ~~q~~al~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 79 EGQMNALSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred chHHHHHHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 456666666655432211 2235889999999999999999999988765
No 207
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.02 E-value=0.72 Score=55.17 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=32.8
Q ss_pred CcHHHHHHHH-HHHHHhhcccccCCcCeE-EEcCCCCcHHHHHHHHHHHHHH
Q psy5647 147 LRPHQREGVK-FMYECVTGVRIEDAYGCI-MADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 147 LrphQ~egv~-~l~~~~~g~~~~~~~g~I-LADemGlGKTlqaIall~~l~~ 196 (755)
=|.-|.+.+. ++..++.| .+..++| +.-.+|+|||.++-.++..+..
T Consensus 759 hREeEIeeLasfL~paIkg---sgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQ---SGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhc---CCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3667777775 44445544 2344554 8999999999999998877654
No 208
>KOG0951|consensus
Probab=93.93 E-value=0.24 Score=60.24 Aligned_cols=107 Identities=21% Similarity=0.365 Sum_probs=71.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-----HhHHHHHHHHhCCCceEEEecCCCH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-----KNWCNEITKWLGGRVAALPIDGGSK 242 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-----~nW~~E~~kw~~~~~~~~~~~~~~~ 242 (755)
..+.+++++...|+|||..|=.++.. +. .+.+++-++|...+ .-|.+-|.+-.| ..++...|...
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l~-----~~---~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G--~~~~~l~ge~s 1226 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALLR-----PD---TIGRAVYIAPLEEIADEQYRDWEKKFSKLLG--LRIVKLTGETS 1226 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhcC-----Cc---cceEEEEecchHHHHHHHHHHHHHhhccccC--ceEEecCCccc
Confidence 45778999999999999887554422 22 34678999999765 447777776633 34444444332
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCC
Q psy5647 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
-+. ++. ...+|+|.|++.+.... .-...++.|+||.|.+...
T Consensus 1227 ~~l--kl~---------~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1227 LDL--KLL---------QKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred cch--HHh---------hhcceEEechhHHHHHh---hhhhcceEeeehhhhhccc
Confidence 221 111 12479999999987663 2235799999999998754
No 209
>PLN03025 replication factor C subunit; Provisional
Probab=93.90 E-value=0.8 Score=49.49 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.1
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
....||.-+.|+|||-.+.+++..+..
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345899999999999999999888754
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.88 E-value=0.43 Score=49.16 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..++..+..+..+ ......+|.-+.|+|||--+.++...+...
T Consensus 29 n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 29 NDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred cHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34455555444322 334578999999999999888877766654
No 211
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.66 E-value=0.58 Score=55.33 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...++.|...+.+. .-.+..||.-.-|+|||..+..+...+...
T Consensus 21 Qe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 555555655554321 123456899999999999999999888754
No 212
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.52 E-value=0.73 Score=54.15 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...+..+...+...+ -....|+.-+.|+|||..|-.++..+...
T Consensus 21 Qe~vv~~L~~~l~~~r--l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGR--LHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444555555443211 12335889999999999999999888764
No 213
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.43 E-value=0.36 Score=51.24 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
+.+.+|.-+.|+|||..|-++...+...+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 447899999999999999988888776553
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=1 Score=49.76 Aligned_cols=132 Identities=15% Similarity=0.076 Sum_probs=73.2
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc--chHhHHHHHHHHhCC-CceEEEecCCCHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS--LVKNWCNEITKWLGG-RVAALPIDGGSKAEIDN 247 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s--ll~nW~~E~~kw~~~-~~~~~~~~~~~~~~~~~ 247 (755)
.-.++.-.+|.|||-++.-++..+....... .+++.+|+=.. .-..|+ +..|... .+.+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~---g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK---SLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC---CCeEEEEeccCccHHHHHH--HHHHhhcCCcce-------------
Confidence 3467888999999999988887665432110 12355554332 111121 3333321 1111
Q ss_pred HHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc---HHHHHHHccc--cccEEEeecCCC
Q psy5647 248 KLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES---QTYQALMGLK--AKRRVLLSGTPI 322 (755)
Q Consensus 248 ~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s---~~~~al~~l~--~~~rllLTGTPi 322 (755)
..+-+++.+......+ .++|+||||++.+...... .....+.... ....+.|+||-=
T Consensus 237 ----------------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 237 ----------------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ----------------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 1112233333322222 3689999999998864322 2222233332 246699999998
Q ss_pred cCCHHHHHHhhhhhcC
Q psy5647 323 QNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 323 qN~l~El~sll~fl~p 338 (755)
++++.+.+.-+..+.+
T Consensus 299 ~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 299 TSDVKEIFHQFSPFSY 314 (388)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 8889888877766554
No 215
>PRK08116 hypothetical protein; Validated
Probab=93.38 E-value=0.82 Score=48.07 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.7
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+.|.+|.-+.|+|||.-+.+++..+...+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999988764
No 216
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.32 E-value=0.88 Score=50.10 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
-|...++.+...+...+ -.+..|+.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~--~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGR--IHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCC--CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35556666555553211 1234589999999999999999888764
No 217
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.12 E-value=1.7 Score=47.71 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHH-HhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 148 RPHQREGVKFMYE-CVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 148 rphQ~egv~~l~~-~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|..|.+.+...+. .+.| ....++++.-+.|+|||..+-.++..+...
T Consensus 20 Re~e~~~l~~~l~~~~~~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~ 67 (365)
T TIGR02928 20 RDEQIEELAKALRPILRG---SRPSNVFIYGKTGTGKTAVTKYVMKELEEA 67 (365)
T ss_pred cHHHHHHHHHHHHHHHcC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5667766654443 3333 234578899999999999998888776543
No 218
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.01 E-value=1.1 Score=52.32 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.9
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+..||.-..|+|||..+..++..+...+
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~ 66 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTG 66 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4458899999999999999999887643
No 219
>PRK14974 cell division protein FtsY; Provisional
Probab=92.97 E-value=1.2 Score=48.25 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=21.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+++.-..|.|||-++..++..+...+
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 56788999999999998888776543
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.46 Score=49.49 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=40.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
..+.|.+|--..|.|||..++|+...+.+.| .+++++.-+.++.+++..+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g-------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAG-------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEEHHHHHHHHHHHHh
Confidence 4678999999999999999999999999554 34777776677776666553
No 221
>PRK08727 hypothetical protein; Validated
Probab=92.78 E-value=1 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.3
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
...+|.-+.|+|||--+.++...+.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4589999999999998888888776654
No 222
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.95 Score=52.77 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...++.|...+... .-.+..|+.-..|+|||..|.+++..+...
T Consensus 18 q~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 555555555544321 112235899999999999999999888753
No 223
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.69 E-value=1 Score=44.91 Aligned_cols=133 Identities=21% Similarity=0.192 Sum_probs=70.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecCC-CHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGG-SKAEIDNKLN 250 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~~-~~~~~~~~l~ 250 (755)
.+|.-.+|.|||-++.-+++.+..++ +++.+|+--.-..-=.++++.|... .+.++..... ...+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-------~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~----- 71 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-------KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEI----- 71 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHH-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-------ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHH-----
Confidence 46777999999999999998887763 2355555432221122333333221 1222222211 11111
Q ss_pred HHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccH---HHHHHHcc-ccccEEEeecCCCcCCH
Q psy5647 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ---TYQALMGL-KAKRRVLLSGTPIQNDL 326 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~---~~~al~~l-~~~~rllLTGTPiqN~l 326 (755)
++.....+...++|+|+||-+-+..+.... ..+.+..+ .....+.|++|--+..+
T Consensus 72 ---------------------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 72 ---------------------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ---------------------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ---------------------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 111222333456899999999876543221 11112222 44567889999877776
Q ss_pred HHHHHhhhhhcC
Q psy5647 327 LEYFSLVHFVNQ 338 (755)
Q Consensus 327 ~El~sll~fl~p 338 (755)
.++......+++
T Consensus 131 ~~~~~~~~~~~~ 142 (196)
T PF00448_consen 131 EQALAFYEAFGI 142 (196)
T ss_dssp HHHHHHHHHSST
T ss_pred HHHHHHhhcccC
Confidence 666655555544
No 224
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=0.077 Score=59.66 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=30.0
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 176 ADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
-+.+|+|||+++.++|.++..+|- +.+|..|-. +++..-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy------r~flffvnq~nilekt~ 43 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY------RNFLFFVNQANILEKTK 43 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch------hhEEEEecchhHHHHHH
Confidence 357899999999999999998863 456776654 6664433
No 225
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=1.2 Score=51.30 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
|...+..+...+...+ -.+..|+.-+.|+|||..+.+++..+...++
T Consensus 19 q~~v~~~L~~~i~~~~--l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~ 65 (504)
T PRK14963 19 QEHVKEVLLAALRQGR--LGHAYLFSGPRGVGKTTTARLIAMAVNCSGE 65 (504)
T ss_pred hHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 4455555555443211 1122489999999999999999988876554
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=1.5 Score=48.30 Aligned_cols=127 Identities=11% Similarity=0.175 Sum_probs=68.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC-C---cchHhHHHHHHHHhCC-CceEEEecCCCHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP-S---SLVKNWCNEITKWLGG-RVAALPIDGGSKAEID 246 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P-~---sll~nW~~E~~kw~~~-~~~~~~~~~~~~~~~~ 246 (755)
-+.|.-..|.|||..+..++..+..++. ++.++.- + ..+.||.. |... .+.++.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~Gk-------kVglI~aDt~RiaAvEQLk~----yae~lgipv~v---------- 301 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKK-------TVGFITTDHSRIGTVQQLQD----YVKTIGFEVIA---------- 301 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCC-------cEEEEecCCcchHHHHHHHH----HhhhcCCcEEe----------
Confidence 4567788999999999999888765542 3455543 2 23445442 3211 111111
Q ss_pred HHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhc-CCccEEEEeCCcccCCCccHHHH---HHHccc-cccEEEeecCC
Q psy5647 247 NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK-NEVGLVLCDEGHRLKNCESQTYQ---ALMGLK-AKRRVLLSGTP 321 (755)
Q Consensus 247 ~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~-~~~~lvIiDEaH~lKn~~s~~~~---al~~l~-~~~rllLTGTP 321 (755)
+.+...+......+.. .++|+||||-+=+..+....... .+.... ....+.|++|-
T Consensus 302 -------------------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt 362 (436)
T PRK11889 302 -------------------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred -------------------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc
Confidence 1222333332333332 35899999998775443222222 222212 22345678887
Q ss_pred CcCCHHHHHHhhhhhcC
Q psy5647 322 IQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 322 iqN~l~El~sll~fl~p 338 (755)
-.+++.+....++.+..
T Consensus 363 k~~d~~~i~~~F~~~~i 379 (436)
T PRK11889 363 KSKDMIEIITNFKDIHI 379 (436)
T ss_pred ChHHHHHHHHHhcCCCC
Confidence 77777777666665443
No 227
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.43 E-value=0.96 Score=51.84 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...+..+...+... .-.+..||.-+.|+|||..|-.++..+....
T Consensus 26 q~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 26 QEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred cHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 555555554433321 1235789999999999999999998887654
No 228
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.33 E-value=1.5 Score=51.32 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...++.+...+... .-....|+.-..|+|||..|.+++..+...
T Consensus 20 Qe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 20 QNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344455554444321 123466999999999999999998887643
No 229
>KOG1132|consensus
Probab=92.32 E-value=0.47 Score=56.00 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=52.9
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcC-------CcEEEEcCCCCHHHHHHHHHHHcc------CCCceEEEeecCCccccc
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRG-------YKYVRLDGSMTIKKRAKVVETFNK------TSNEFIFMLSSKAGGCGL 580 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g-------~~~~~ldG~~~~~~R~~~v~~Fn~------~~~~~v~LlSt~agg~GL 580 (755)
.+-+|||..+-.++|-+..++...+ .+-+.+. --+..+=.+++.+|-+ .++...+.+.-...++||
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vE-Pr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVE-PRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceec-cCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 3458888877777787765554432 2222221 1133344555666643 112223445666779999
Q ss_pred cc--CCCCEEEEeCCCCCCCcHHHH
Q psy5647 581 NL--IGANRLVMFDPDWNPANDDQA 603 (755)
Q Consensus 581 NL--~~a~~vI~~D~~WNp~~~~Qa 603 (755)
++ ..+..||....|+=|..|.|.
T Consensus 640 DFsD~~~RaVI~tGlPyP~~~D~~V 664 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPYPPVMDPRV 664 (945)
T ss_pred CccccCCceeEEecCCCCCCCCHHH
Confidence 99 467788999888877766543
No 230
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.30 E-value=2 Score=48.24 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=36.9
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc------ccccEEEeecCCCcCCHHHHHHhhhhhcC
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l------~~~~rllLTGTPiqN~l~El~sll~fl~p 338 (755)
++|+||||-+-+..... .....+..+ .....++|++|+-.+.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 58999999997754322 222222222 23457999999988888888887776655
No 231
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=0.9 Score=55.14 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=23.3
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..||.-..|+|||..+..++..++..
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 446899999999999999999888754
No 232
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=1.7 Score=52.61 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~ 197 (755)
.|+.-+.|+|||..|-.++..+...
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCc
Confidence 4899999999999999999887653
No 233
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.70 E-value=1.5 Score=52.95 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=43.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
..|-+-|++++..+.. ..+-++|-...|+|||..+-+++..+...+ .++++++|+...
T Consensus 351 ~~Ls~~Q~~Av~~i~~--------s~~~~il~G~aGTGKTtll~~i~~~~~~~g-------~~V~~~ApTg~A 408 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG--------SGDIAVVVGRAGTGKSTMLKAAREAWEAAG-------YRVIGAALSGKA 408 (744)
T ss_pred CCCCHHHHHHHHHHhc--------CCCEEEEEecCCCCHHHHHHHHHHHHHhCC-------CeEEEEeCcHHH
Confidence 4688999999987742 234578999999999988887766555443 347888998654
No 234
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=1.5 Score=48.97 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...+..+...+... .-....|+.-+.|+|||..|.+++..+....
T Consensus 21 q~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~ 66 (397)
T PRK14955 21 QEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (397)
T ss_pred hHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 445555555444321 1234578899999999999999998887653
No 235
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.67 E-value=1.9 Score=49.70 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...++.+...+...+ -.+..|+.-..|+|||..|-.++..+....
T Consensus 21 q~~v~~~L~~~~~~~~--l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~ 66 (509)
T PRK14958 21 QAPVVRALSNALDQQY--LHHAYLFTGTRGVGKTTISRILAKCLNCEK 66 (509)
T ss_pred CHHHHHHHHHHHHhCC--CCeeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4555555555553211 133458999999999999999998887543
No 236
>CHL00181 cbbX CbbX; Provisional
Probab=91.65 E-value=0.48 Score=50.34 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=24.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
+...+|.-+.|+|||..|-++...+...+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 334789999999999999999888766553
No 237
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.48 E-value=1.9 Score=49.88 Aligned_cols=27 Identities=22% Similarity=0.227 Sum_probs=22.6
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..|+.-+.|+|||..|-.++..+...
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456899999999999999998887643
No 238
>PF13245 AAA_19: Part of AAA domain
Probab=91.41 E-value=0.62 Score=38.76 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=32.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
-+++--..|+|||.+++..+..+....... .+++||++|+...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~---~~~vlv~a~t~~a 54 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADP---GKRVLVLAPTRAA 54 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCC---CCeEEEECCCHHH
Confidence 355688999999999999999888542211 2569999999543
No 239
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.39 E-value=0.94 Score=42.70 Aligned_cols=54 Identities=9% Similarity=0.237 Sum_probs=34.2
Q ss_pred EEEcCCCCHHHHHHHHHHHccCCC-ceEEEeecC--CcccccccCC--CCEEEEeCCCCC
Q psy5647 542 VRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSK--AGGCGLNLIG--ANRLVMFDPDWN 596 (755)
Q Consensus 542 ~~ldG~~~~~~R~~~v~~Fn~~~~-~~v~LlSt~--agg~GLNL~~--a~~vI~~D~~WN 596 (755)
+.+.+.. ..+..+++++|++... ...+|+++. ...+|||+++ +..||+.-.|+-
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 3444443 2355789999987322 012444444 4799999975 678888888863
No 240
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.33 E-value=1.9 Score=46.72 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.++..++..+..-+.... ....+.+|.-++|+|||..+.+++..++..+
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~-~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFD-KNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-ccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 344566666664443332211 2457899999999999999999999998765
No 241
>PRK12377 putative replication protein; Provisional
Probab=91.21 E-value=1.6 Score=45.29 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+..+.+|.-+.|+|||..+.|++..+...+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999988765
No 242
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.20 E-value=3 Score=46.71 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=86.8
Q ss_pred HHHHHh-ccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcc-ccccc
Q psy5647 505 MLAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGG-CGLNL 582 (755)
Q Consensus 505 lL~~~~-~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg-~GLNL 582 (755)
+|..+. .....++|||..+=--.=.|..+|+..++.|+.++--++.++-..+-..|..+... ++|.|-++-= .=..+
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~-iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP-ILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce-EEEEEhHHhhhhhcee
Confidence 566665 45567888887655555568899999999999999999999999999999986554 6666655321 13346
Q ss_pred CCCCEEEEeCCCCCCCcHHHHhHhhhccCC----CCcEEEEEEeeC
Q psy5647 583 IGANRLVMFDPDWNPANDDQAMARVWRDGQ----KKPCFVYRFLST 624 (755)
Q Consensus 583 ~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ----~k~V~Vyrlv~~ 624 (755)
-|+.+||+|.||-+|.-|...+.-...-.+ ...+.+.-|.++
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 689999999999999999988865554443 233444444444
No 243
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.09 E-value=1.4 Score=51.73 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
|...++.+...+...+ -....|+.-..|+|||..+..++..+...++
T Consensus 21 Qe~vv~~L~~~l~~~r--l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~ 67 (618)
T PRK14951 21 QEHVVQALTNALTQQR--LHHAYLFTGTRGVGKTTVSRILAKSLNCQGP 67 (618)
T ss_pred cHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcCCCc
Confidence 5556666655553211 1234588999999999999999998886554
No 244
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.08 E-value=2.3 Score=46.47 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=34.5
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
...|..| .+++.++...+... ...+..++.-+.|+|||..+..++..++..
T Consensus 22 ~~~l~Gh-~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 22 NTRLFGH-EEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred hhhccCc-HHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3344443 44566666655321 123468889999999999999999988764
No 245
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.07 E-value=1.5 Score=49.60 Aligned_cols=49 Identities=12% Similarity=-0.026 Sum_probs=31.8
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
.++.+|.-+.|+|||..+-++...+....+. .+++.|.+..++......
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~-----~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSD-----LKVSYMSGDEFARKAVDI 189 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCC-----CeEEEEEHHHHHHHHHHH
Confidence 3568899999999999888887776654332 235555554444333333
No 246
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.75 E-value=2.4 Score=46.77 Aligned_cols=90 Identities=12% Similarity=0.187 Sum_probs=53.9
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l 249 (755)
+.-.+++-++|.|||..++.++..+...+ .++++|.-.-...|......++ +...
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g-------~~VlYvs~EEs~~qi~~Ra~rl-g~~~----------------- 136 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG-------GKVLYVSGEESPEQIKLRADRL-GIST----------------- 136 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEECCcCHHHHHHHHHHc-CCCc-----------------
Confidence 44578899999999999999987776543 3477776554344433322221 1000
Q ss_pred HHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC
Q psy5647 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK 296 (755)
..+.+.....+......+...++++||||+.+.+.
T Consensus 137 ------------~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 ------------ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ------------ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 12333333233333344455688999999999874
No 247
>PHA02533 17 large terminase protein; Provisional
Probab=90.69 E-value=1.9 Score=49.87 Aligned_cols=56 Identities=18% Similarity=0.059 Sum_probs=36.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
-.|+|+|++-+..|.. .+-.++.-.=..|||..+.+++..+....+. ..+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~---------~R~~ii~~aRq~GKStl~a~~al~~a~~~~~-----~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---------NRFNACNLSRQLGKTTVVAIFLLHYVCFNKD-----KNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc---------CeEEEEEEcCcCChHHHHHHHHHHHHHhCCC-----CEEEEEeCC
Confidence 4788999988877631 1223666677899999888765433332221 257888885
No 248
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.63 E-value=4.1 Score=43.99 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
++|+|....+-+...+... .-.++.|+.-+.|+||+..|.+++..++...+
T Consensus 3 ~yPW~~~~~~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~ 53 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTP 53 (325)
T ss_pred CCcchHHHHHHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4687777777776665421 12356678999999999999999999987654
No 249
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.47 E-value=2 Score=41.81 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=37.6
Q ss_pred hhhhhcCCccEEEEeCCcccCCCc----cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhh
Q psy5647 276 ASVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVH 334 (755)
Q Consensus 276 ~~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~ 334 (755)
...+....+|+||+||.=..-+.. ......+..-+..--++|||.-....+.|+..++.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 345566789999999987554432 34444454445556799999966555555444443
No 250
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.46 E-value=1.6 Score=49.81 Aligned_cols=27 Identities=30% Similarity=0.222 Sum_probs=22.5
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
++.|+.-+.|+|||..|-+++..+...
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 346999999999999999998877543
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.32 E-value=2.1 Score=48.80 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.6
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
.+..|+.-..|+|||-.|..++..+...
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3568999999999999999988877654
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=90.25 E-value=2.6 Score=43.27 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=21.1
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..+|.-+.|+|||.-+-++...+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 567899999999998877776665544
No 253
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.24 E-value=2.3 Score=48.38 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=25.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.+..+|.-+.|+|||..+-++...+....+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~ 177 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNP 177 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence 356889999999999999999988877643
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.19 E-value=1.8 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~ 196 (755)
..++.-+.|+|||..+.+++..+..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999999887764
No 255
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.11 E-value=3.3 Score=45.60 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
|.++++.+.+.+... .-....|+.-..|+|||..|.+++..++...+
T Consensus 24 q~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~ 70 (365)
T PRK07471 24 HAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPP 70 (365)
T ss_pred hHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence 566667666665432 12446789999999999999999999997664
No 256
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.02 E-value=1.7 Score=44.54 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=38.0
Q ss_pred eeCchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 138 ~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
...|.+....-+|+.- +.-+-.++. .+.+-..+.-++|+|||+.+=+++..+. .+ +.++|+.|...+
T Consensus 24 ~~~~~~~~~~a~h~e~-l~~l~~~i~----d~qg~~~vtGevGsGKTv~~Ral~~s~~-~d-------~~~~v~i~~~~~ 90 (269)
T COG3267 24 DIQPGLDYWAADHNEA-LLMLHAAIA----DGQGILAVTGEVGSGKTVLRRALLASLN-ED-------QVAVVVIDKPTL 90 (269)
T ss_pred chhhhhhhhhhhhhHH-HHHHHHHHh----cCCceEEEEecCCCchhHHHHHHHHhcC-CC-------ceEEEEecCcch
Confidence 3445555555566653 333333332 2333356778999999999985554443 22 224567777554
No 257
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.98 E-value=3.4 Score=45.95 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
...++++.-..|+|||..+-.++..+...+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 345689999999999999999988776554
No 258
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.87 E-value=2.6 Score=49.71 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.|.+.+..+...+...+ -....|+.-+.|+|||..|.+++..+....
T Consensus 20 Gq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~ 66 (620)
T PRK14948 20 GQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLN 66 (620)
T ss_pred ChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCC
Confidence 35555565555543211 234678999999999999999999887643
No 259
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=89.84 E-value=2.2 Score=46.28 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.++|+|....+-+... | .-.+..++.-+.|.|||..|.+++..++...+
T Consensus 3 ~~yPWl~~~~~~~~~~--~---r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~ 51 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR--G---RHPHAYLLHGPAGIGKRALAERLAAALLCEAP 51 (328)
T ss_pred cCCCCcHHHHHHHHHC--C---CcceeeeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 3578888887777653 2 23456778999999999999999999987654
No 260
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=89.79 E-value=0.84 Score=44.81 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=32.0
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
..+.|.+|.-.+|+|||..|.+++..+...+. +++++.-..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-------~v~f~~~~~L~ 87 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGY-------SVLFITASDLL 87 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---------EEEEEHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc-------ceeEeecCcee
Confidence 46778999999999999999999999988653 36666655544
No 261
>KOG0989|consensus
Probab=89.75 E-value=1.6 Score=45.91 Aligned_cols=44 Identities=16% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
+|...|+-+...+.+ ......++--+.|+|||-++.++...+..
T Consensus 40 gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 788888888877754 34566788889999999999999988864
No 262
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.63 E-value=2.2 Score=50.01 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
|...++.+...+... .-....||.-..|+|||..|..++..+...++
T Consensus 29 q~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~ 75 (598)
T PRK09111 29 QEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGP 75 (598)
T ss_pred cHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCc
Confidence 445555554444321 22446888999999999999999998876654
No 263
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.49 E-value=3.6 Score=46.02 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=24.2
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
....+|.-..|+|||..+-++...+....
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~ 164 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN 164 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 34578999999999999999988887654
No 264
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=89.49 E-value=0.28 Score=47.91 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=24.8
Q ss_pred CCCEEEEehhhHhhhh--hhh--hcCCccEEEEeCCcccCC
Q psy5647 261 VNPILVISYETFRSHA--SVL--HKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 261 ~~~VlI~sye~l~~~~--~~l--~~~~~~lvIiDEaH~lKn 297 (755)
..+|+|++|..+-... ..+ ...+-.+||+||||+|-+
T Consensus 119 ~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 119 NADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp G-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4589999999886532 122 223557899999999844
No 265
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.42 E-value=5.6 Score=42.56 Aligned_cols=122 Identities=22% Similarity=0.308 Sum_probs=70.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEe-cCCCHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPI-DGGSKAEIDNKLN 250 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~-~~~~~~~~~~~l~ 250 (755)
.++.---|.|||-+..=++..+..+| +++|+.+--+-..-=.+++.-|... .+.++.. .|++......
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~g-------~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf--- 211 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQG-------KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF--- 211 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHCC-------CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH---
Confidence 44566779999998888888888776 3466666555444444455555432 2333331 2333322211
Q ss_pred HHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHcc---------ccccEEEee--c
Q psy5647 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL---------KAKRRVLLS--G 319 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l---------~~~~rllLT--G 319 (755)
+.+ ..-...++|+||||=|=|+-|... ...-|..+ .+++.++|. |
T Consensus 212 -------------------DAi----~~Akar~~DvvliDTAGRLhnk~n-LM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 212 -------------------DAI----QAAKARGIDVVLIDTAGRLHNKKN-LMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred -------------------HHH----HHHHHcCCCEEEEeCcccccCchh-HHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 111 122345799999999999988543 22223222 345555555 8
Q ss_pred CCCcCCHHH
Q psy5647 320 TPIQNDLLE 328 (755)
Q Consensus 320 TPiqN~l~E 328 (755)
|-=||.+..
T Consensus 268 ttGqnal~Q 276 (340)
T COG0552 268 TTGQNALSQ 276 (340)
T ss_pred ccChhHHHH
Confidence 888887654
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=89.34 E-value=5.9 Score=39.21 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=75.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH-HHHH--HHHhCCCceEEEecCC-----
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW-CNEI--TKWLGGRVAALPIDGG----- 240 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW-~~E~--~kw~~~~~~~~~~~~~----- 240 (755)
..+.+++--..|-|||-.|++++......|. +++||= .+-..| ..|. .+-++ .+.......+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~-------~V~ivQ--FlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~ 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK-------KVGVVQ--FIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWET 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC-------eEEEEE--EecCCCccCHHHHHhcCC-CcEEEECCCCCcccC
Confidence 3456788899999999999999998887763 355542 111222 1222 22222 1222221111
Q ss_pred -CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc----cHHHHHHHccccccEE
Q psy5647 241 -SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGLKAKRRV 315 (755)
Q Consensus 241 -~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l~~~~rl 315 (755)
...+...... +.+......+....+|+||+||.=..-+.. ......+..-+..--|
T Consensus 91 ~~~~e~~~~~~-------------------~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~ev 151 (191)
T PRK05986 91 QDRERDIAAAR-------------------EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHV 151 (191)
T ss_pred CCcHHHHHHHH-------------------HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEE
Confidence 1110000000 112223345567789999999987654433 3444444444555579
Q ss_pred EeecCCCcCCHHHHHHhhhhh
Q psy5647 316 LLSGTPIQNDLLEYFSLVHFV 336 (755)
Q Consensus 316 lLTGTPiqN~l~El~sll~fl 336 (755)
+|||--....+.|+..++.-+
T Consensus 152 VlTGR~~p~~Lie~ADlVTEm 172 (191)
T PRK05986 152 VITGRGAPRELIEAADLVTEM 172 (191)
T ss_pred EEECCCCCHHHHHhCchheec
Confidence 999996665555555544443
No 267
>PRK06921 hypothetical protein; Provisional
Probab=89.22 E-value=2.8 Score=43.99 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
.+.+.+|.-++|+|||..+.+++..+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46789999999999999999999888765
No 268
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=89.14 E-value=3.7 Score=50.78 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=71.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
.|-+-|+++|..+.. ...-++|--..|+|||.+.-++...+...+ .+++.++|+.... ..+.
T Consensus 346 ~Ls~eQr~Av~~il~--------s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G-------~~V~~~ApTGkAA---~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVTD--------GRDLGVVVGYAGTGKSAMLGVAREAWEAAG-------YEVRGAALSGIAA---ENLE 407 (988)
T ss_pred CCCHHHHHHHHHHhc--------CCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEecCcHHHH---HHHh
Confidence 589999999987642 223467888999999987554444333333 2478888986442 2222
Q ss_pred HHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHH
Q psy5647 226 KWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305 (755)
Q Consensus 226 kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~a 305 (755)
.-.+ + ... .+..|...+. . ........++||||||-.+.. .....
T Consensus 408 e~tG--i---------~a~---TI~sll~~~~----------------~--~~~~l~~~~vlIVDEASMv~~---~~m~~ 452 (988)
T PRK13889 408 GGSG--I---------ASR---TIASLEHGWG----------------Q--GRDLLTSRDVLVIDEAGMVGT---RQLER 452 (988)
T ss_pred hccC--c---------chh---hHHHHHhhhc----------------c--cccccccCcEEEEECcccCCH---HHHHH
Confidence 1111 0 001 1111111000 0 000123568999999998843 33333
Q ss_pred HHc-c-ccccEEEeecCCCcC
Q psy5647 306 LMG-L-KAKRRVLLSGTPIQN 324 (755)
Q Consensus 306 l~~-l-~~~~rllLTGTPiqN 324 (755)
+.. . ....+|+|.|=|-|-
T Consensus 453 LL~~a~~~garvVLVGD~~QL 473 (988)
T PRK13889 453 VLSHAADAGAKVVLVGDPQQL 473 (988)
T ss_pred HHHhhhhCCCEEEEECCHHHc
Confidence 332 2 567899999988764
No 269
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=89.03 E-value=1.5 Score=48.42 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
+|-+-|++++..+.+.+.. ..+....+.-.-|+|||...=++...+...+ +.+++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~-------~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRG-------KKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHHHHHHHHhcccc-------ceEEEecchHHH
Confidence 3667899999999887753 3456678888999999998888777664432 458999998654
No 270
>PRK06893 DNA replication initiation factor; Validated
Probab=88.96 E-value=3.4 Score=42.24 Aligned_cols=28 Identities=11% Similarity=-0.139 Sum_probs=23.2
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
...+|.-+.|+|||.-+-++...+...+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999998888877664
No 271
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.90 E-value=4.1 Score=47.71 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.6
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
....|+.-+.|+|||..|..++..+...
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3567789999999999999999888753
No 272
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.80 E-value=8.9 Score=36.83 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=70.5
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH---HHHHHHHhCCCceEEEecCCC---HHHHHH
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW---CNEITKWLGGRVAALPIDGGS---KAEIDN 247 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW---~~E~~kw~~~~~~~~~~~~~~---~~~~~~ 247 (755)
.+--..|.|||-.|+++......+|. ++++|==- -..| +..+.+-++ .+..+....+. ..+..+
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g~-------~v~~vQFl--Kg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~ 75 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHGY-------RVGVVQFL--KGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEE 75 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEEe--CCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHH
Confidence 44566799999999999988887763 35553100 0012 122223333 23333222110 000001
Q ss_pred HHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc----cHHHHHHHccccccEEEeecCCCc
Q psy5647 248 KLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 248 ~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l~~~~rllLTGTPiq 323 (755)
..... .+.+......+....+|+||+||.=..-+.. ......+..-....-++|||--..
T Consensus 76 ~~~~a----------------~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 76 DIAAA----------------AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHH----------------HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11100 0122223344556789999999987663332 344445555455567999999766
Q ss_pred CCHHHHHHhhh
Q psy5647 324 NDLLEYFSLVH 334 (755)
Q Consensus 324 N~l~El~sll~ 334 (755)
..+.|+..++.
T Consensus 140 ~~l~e~AD~VT 150 (159)
T cd00561 140 KELIEAADLVT 150 (159)
T ss_pred HHHHHhCceee
Confidence 65555544443
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.66 E-value=1.9 Score=48.74 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.8
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
++.+|.-+.|+|||.-+-++...+...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~ 169 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG 169 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 5688999999999999999988887653
No 274
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=88.52 E-value=6.3 Score=42.45 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=42.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
...++|+|....+.+...+... .-....++.-..|+||+..|.+++..++..++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~ 55 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAG--RLGHGLLICGPEGLGKRAVALALAEHVLASGP 55 (319)
T ss_pred CccccccHHHHHHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHhCCCC
Confidence 3578999999999888776432 12346788999999999999999999987653
No 275
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.48 E-value=4.5 Score=43.96 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~ 200 (755)
.++|+|....+.+...+... .-....+++-+-|+||+..|.+++..++...+.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~ 54 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQ 54 (334)
T ss_pred CCCCCChHHHHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 46788888888877766432 224467789999999999999999999876543
No 276
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.27 E-value=5 Score=46.83 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=23.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.+..|+.-+.|+|||..|-.++..+....
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~ 66 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLN 66 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 34467899999999999999988876554
No 277
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.26 E-value=2.6 Score=49.02 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.9
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.+..|+.-+.|+|||..|.+++..+...++
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~ 67 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNP 67 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 345789999999999999999988876543
No 278
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.21 E-value=5.2 Score=47.65 Aligned_cols=46 Identities=15% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...++.+...+... .-.+..|+.-+.|.|||..|-+++..+....
T Consensus 23 Qe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~ 68 (725)
T PRK07133 23 QDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSH 68 (725)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccc
Confidence 444555555544321 1234468999999999999999988876543
No 279
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.19 E-value=7.6 Score=46.00 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...++.+...+... .-.++.||.-..|+|||..+.+++..+...
T Consensus 21 Qe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 444444444444321 123467999999999999999998887654
No 280
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=88.05 E-value=4.9 Score=50.18 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=73.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
..|-+-|+++|..+. ...+=++|--.-|+|||.+.-++...+...| .+++.++|+.--. ..+
T Consensus 380 ~~Ls~eQ~~Av~~i~--------~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G-------~~V~g~ApTgkAA---~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA--------GPARIAAVVGRAGAGKTTMMKAAREAWEAAG-------YRVVGGALAGKAA---EGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHh--------ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEcCcHHHH---HHH
Confidence 368999999998763 1233467788899999988877765554443 3478888885332 333
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHH-
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY- 303 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~- 303 (755)
.+-.+- .... +..|..... .....-..-++||||||..+. +...
T Consensus 442 ~e~~Gi--~a~T------------Ias~ll~~~------------------~~~~~l~~~~vlVIDEAsMv~---~~~m~ 486 (1102)
T PRK13826 442 EKEAGI--QSRT------------LSSWELRWN------------------QGRDQLDNKTVFVLDEAGMVA---SRQMA 486 (1102)
T ss_pred HHhhCC--Ceee------------HHHHHhhhc------------------cCccCCCCCcEEEEECcccCC---HHHHH
Confidence 332221 1111 111100000 000001235799999999883 3333
Q ss_pred HHHHcc-ccccEEEeecCCCcC
Q psy5647 304 QALMGL-KAKRRVLLSGTPIQN 324 (755)
Q Consensus 304 ~al~~l-~~~~rllLTGTPiqN 324 (755)
..+... ....+++|.|=|-|-
T Consensus 487 ~Ll~~~~~~garvVLVGD~~QL 508 (1102)
T PRK13826 487 LFVEAVTRAGAKLVLVGDPEQL 508 (1102)
T ss_pred HHHHHHHhcCCEEEEECCHHHc
Confidence 334434 467899999988774
No 281
>PTZ00293 thymidine kinase; Provisional
Probab=88.00 E-value=1.1 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
++.-.||+|||-..|-.+..+...+ ++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~ag-------~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYSE-------KKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcC-------CceEEEEecc
Confidence 4567999999988887776665554 4579998874
No 282
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.99 E-value=4.3 Score=41.25 Aligned_cols=30 Identities=17% Similarity=0.053 Sum_probs=24.3
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.....+|.-+.|+|||..+.++...+...+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456789999999999999988887765543
No 283
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=87.98 E-value=7.6 Score=37.36 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~ 200 (755)
|.+.++.+...+... .-....|+.-+-|.||+-.|.+++..++...+.
T Consensus 2 q~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 556666666665421 123345888899999999999999988876643
No 284
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.71 E-value=5.3 Score=46.82 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...++.+...+... .-.+..|+.-+-|+|||..+.+++..+...
T Consensus 21 q~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 444445554444321 123445889999999999999999887654
No 285
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.24 E-value=6 Score=45.83 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...+..+...+... ......|+.-+.|+|||..|-.++..+...
T Consensus 21 q~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 21 QQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344444444444311 122346899999999999999999888653
No 286
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.23 E-value=5.2 Score=42.95 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=24.5
Q ss_pred CccEEEEeCCcccCCCcc--HHHHHHHccccccEEEeecCCC
Q psy5647 283 EVGLVLCDEGHRLKNCES--QTYQALMGLKAKRRVLLSGTPI 322 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s--~~~~al~~l~~~~rllLTGTPi 322 (755)
..++||+||+|++..... .....+.......++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 467999999999833221 1222233345566788888654
No 287
>KOG0740|consensus
Probab=86.94 E-value=1.3 Score=49.13 Aligned_cols=54 Identities=24% Similarity=0.294 Sum_probs=40.6
Q ss_pred hhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 162 VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 162 ~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
++|.+ ...+|.+|+-+.|.|||+-+.+++.... ..+.=|.|++|...|.-|-.|
T Consensus 179 F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~----------atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 179 FLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESG----------ATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred hhccc-cccchhheecCCCCchHHHHHHHHhhhc----------ceEeeccHHHhhhhccChHHH
Confidence 34444 4567899999999999999999886643 236778899999888655544
No 288
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.87 E-value=6.6 Score=44.46 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=24.4
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
+..+|.-+.|+|||.-+-++...+....+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~ 159 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC
Confidence 45889999999999999998888876554
No 289
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=86.76 E-value=2.9 Score=51.52 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 154 GVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 154 gv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
-+..+.+.+.. ...++.||--+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 46666665542 35678899999999999999888876643
No 290
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.68 E-value=3.2 Score=50.91 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...++.||.-+.|.|||..+-+++..+..
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 35678999999999999999988877654
No 291
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.66 E-value=2.1 Score=42.11 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=60.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHH
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (755)
+..-.|++|||-.-|-.+..+...+ .+++|..|..=..-=..++....|....
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g-------~~v~vfkp~iD~R~~~~~V~Sr~G~~~~-------------------- 60 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG-------MKVLVFKPAIDTRYGVGKVSSRIGLSSE-------------------- 60 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC-------CeEEEEecccccccccceeeeccCCccc--------------------
Confidence 4566899999997777776665555 4588888874221111111111111111
Q ss_pred HHhCCCCCCCEEEEehhhHhhhhhhhhc-CCccEEEEeCCcccCCCccHHHHHHHcccc--ccEEEeecC
Q psy5647 254 QTYGRRPVNPILVISYETFRSHASVLHK-NEVGLVLCDEGHRLKNCESQTYQALMGLKA--KRRVLLSGT 320 (755)
Q Consensus 254 ~~~~~~~~~~VlI~sye~l~~~~~~l~~-~~~~lvIiDEaH~lKn~~s~~~~al~~l~~--~~rllLTGT 320 (755)
-++|-+-..+......... ...+.|.+||||-+.. ..-..+..+.. ..++++.|.
T Consensus 61 ---------A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 61 ---------AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ---------ceecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 1333333333333333222 2378999999999844 55555666633 577777775
No 292
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.64 E-value=0.66 Score=53.09 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=63.8
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-----cchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy5647 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-----SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSF 252 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-----sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (755)
+=--|||...+.+|.-++..-.. =++..|+-- .+...-...+.+|+|.... +...+
T Consensus 210 PRRHGKTWf~VpiIsllL~s~~g-----I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v-i~~k~------------- 270 (668)
T PHA03372 210 PRRHGKTWFIIPIISFLLKNIIG-----ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT-IENKD------------- 270 (668)
T ss_pred cccCCceehHHHHHHHHHHhhcC-----ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce-eeecC-------------
Confidence 55679999999988877763221 124555543 2233445567889987432 22211
Q ss_pred HHHhCCCCCCCEEEEehhhHhh--------hhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecC
Q psy5647 253 MQTYGRRPVNPILVISYETFRS--------HASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320 (755)
Q Consensus 253 ~~~~~~~~~~~VlI~sye~l~~--------~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGT 320 (755)
.++..+....+. ....+....|+++++||||-+|-..-.+.--+..-+..+.|.+|-|
T Consensus 271 ----------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 ----------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ----------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 122222221111 1133455689999999999997643333333333456666777655
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.64 E-value=6.2 Score=42.30 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCC
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPL 200 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~ 200 (755)
..++.-+.|.|||..|.+++..+....+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~ 54 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPT 54 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 47889999999999999999999876654
No 294
>PRK09183 transposase/IS protein; Provisional
Probab=86.59 E-value=3.6 Score=43.02 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.2
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.+.+|.-+.|+|||.-+.++...+...|
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G 130 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG 130 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 4567888999999999999999977766554
No 295
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.35 E-value=9.6 Score=40.73 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
|.+.+..+...+.. ......+|.-+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555444432 2233589999999999999988877664
No 296
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.29 E-value=6 Score=46.52 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|...+..+..++...+ -.+..|+.-+.|+|||..+.+++..+...
T Consensus 21 q~~~~~~L~~~i~~~~--i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 21 QEHVVQTLRNAIAEGR--VAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CHHHHHHHHHHHHhCC--CceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5556666655554211 12234899999999999999999887643
No 297
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.03 E-value=6.5 Score=44.26 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.1
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.-.++.-..|.|||.++..++..+...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 3467888999999999999998877654
No 298
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.00 E-value=4.5 Score=49.67 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 154 GVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 154 gv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
-+..+.+.+.. ....+.||.-+.|.|||..+=+++..+..
T Consensus 195 ei~~~i~~l~r---~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 195 EIRQMIDILLR---RRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred HHHHHHHHHhc---CCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 46666654432 45678999999999999998888776643
No 299
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.92 E-value=7.1 Score=45.03 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
..|+.-+.|.|||-.|-+++..+...
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 34889999999999999999888754
No 300
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.90 E-value=3.6 Score=49.68 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
...+.||.-+.|+|||..+-++.+.+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45788999999999999999888766543
No 301
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=85.83 E-value=0.95 Score=52.71 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=97.1
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
.....|||++-...+-. .....+.+.-..-+|||..++.++...+...| .++|+|.|+ .....|.+
T Consensus 14 ~~~~~Py~~eimd~~~~-------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------~~~l~v~Pt~~~a~~~~~ 80 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSD-------PSVREVVVMKSAQVGKTELLLNWIGYSIDQDP------GPMLYVQPTDDAAKDFSK 80 (557)
T ss_pred CCCCChhHHHHHHhcCC-------cCccEEEEEEcchhhHhHHHHhhceEEEEeCC------CCEEEEEEcHHHHHHHHH
Confidence 45677999988877633 34567888889999999988888777666654 458999999 66667754
Q ss_pred H-HHHHhCC--CceEEEecCCCHHHH-HHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC--
Q psy5647 223 E-ITKWLGG--RVAALPIDGGSKAEI-DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK-- 296 (755)
Q Consensus 223 E-~~kw~~~--~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK-- 296 (755)
+ |...+.. .+.-.......+... ....+.| ....+.++...+- ..|.....++|++||....-
T Consensus 81 ~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f-------~gg~l~~~ga~S~----~~l~s~~~r~~~~DEvD~~p~~ 149 (557)
T PF05876_consen 81 ERLDPMIRASPVLRRKLSPSKSRDSGNTILYKRF-------PGGFLYLVGANSP----SNLRSRPARYLLLDEVDRYPDD 149 (557)
T ss_pred HHHHHHHHhCHHHHHHhCchhhcccCCchhheec-------CCCEEEEEeCCCC----cccccCCcCEEEEechhhcccc
Confidence 3 4433221 000000000000000 0000011 1123555554433 34566789999999999882
Q ss_pred --CCccHHHHHH---HccccccEEEeecCCCcCCHHHHHHhh
Q psy5647 297 --NCESQTYQAL---MGLKAKRRVLLSGTPIQNDLLEYFSLV 333 (755)
Q Consensus 297 --n~~s~~~~al---~~l~~~~rllLTGTPiqN~l~El~sll 333 (755)
+.......+. ..+...+++++..||....-..+..+.
T Consensus 150 ~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 150 VGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred CccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 3333444443 344567889999999877544444443
No 302
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.78 E-value=1.2 Score=43.55 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=25.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..-.|++|||...|..+..+...+ ++++++-|..
T Consensus 6 i~GpM~sGKS~eLi~~~~~~~~~~-------~~v~~~kp~~ 39 (176)
T PF00265_consen 6 ITGPMFSGKSTELIRRIHRYEIAG-------KKVLVFKPAI 39 (176)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--------EEEEEEEST
T ss_pred EECCcCChhHHHHHHHHHHHHhCC-------CeEEEEEecc
Confidence 445899999999998887776554 4578888873
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=85.78 E-value=7.3 Score=44.16 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=53.9
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l 249 (755)
+.-.+|.-++|.|||.-++.++..+.+.+ .++|.|.-.....+......+. +....
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g-------~~vlYvs~Ees~~qi~~ra~rl-g~~~~---------------- 135 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG-------GKVLYVSGEESASQIKLRAERL-GLPSD---------------- 135 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccccHHHHHHHHHHc-CCChh----------------
Confidence 44568899999999999999988776443 3478877654444443333222 10000
Q ss_pred HHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCC
Q psy5647 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn 297 (755)
.+.+..-..+......+...++++||+|+.+.+..
T Consensus 136 -------------~l~~~~e~~l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 -------------NLYLLAETNLEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred -------------cEEEeCCCCHHHHHHHHHhhCCCEEEEechhhhcc
Confidence 12222222222233344456789999999997753
No 304
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.69 E-value=8.9 Score=35.91 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=24.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
++.-+.|+|||..+..++..+...+ .+++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~-------~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG-------GKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC-------CEEEEEECC
Confidence 4566899999999999988776533 235666544
No 305
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.58 E-value=5.6 Score=46.83 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...+..+...+... .-....|+.-..|.|||..|..++..+....
T Consensus 21 Qe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~ 66 (620)
T PRK14954 21 QEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQR 66 (620)
T ss_pred cHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 555666665555321 1234578999999999999999998887643
No 306
>KOG0738|consensus
Probab=85.20 E-value=4.8 Score=43.70 Aligned_cols=59 Identities=29% Similarity=0.366 Sum_probs=38.6
Q ss_pred HHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 157 FMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 157 ~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
||=+.+.|.+ ..-+|++|.-..|+|||+-|=|++-..- -++.=|.-++|...|.-|=.|
T Consensus 233 ~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~----------tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 233 WMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECG----------TTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred hhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhc----------CeEEEechhhhhhhhccchHH
Confidence 3434444433 4567999999999999999988875431 124445555777888655444
No 307
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.13 E-value=6.2 Score=43.91 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcccc-------cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRI-------EDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~-------~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...+..+...+...+. .-.++.|+.-+.|.|||..|.+++..++...
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~ 64 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTD 64 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 55555555555532110 0235678999999999999999998877653
No 308
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.10 E-value=5.3 Score=48.40 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=24.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
....+.||.-+.|.|||..+-+++..+...
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 356789999999999999999888777543
No 309
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.60 E-value=11 Score=36.30 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.++.-..|.|||..+..++..+...+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 35678999999999999998877664
No 310
>KOG0952|consensus
Probab=84.52 E-value=0.95 Score=54.46 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cch----HhHHHHHHHHhCCCceEEEecCCCHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLV----KNWCNEITKWLGGRVAALPIDGGSKA 243 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll----~nW~~E~~kw~~~~~~~~~~~~~~~~ 243 (755)
...+..+.+.+|.|||+.+-..++..+...|. .++++|+|. .++ ..|..-+. .+ .++++..+|....
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-----~kvvyIap~kalvker~~Dw~~r~~--~~-g~k~ie~tgd~~p 1013 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-----SKVVYIAPDKALVKERSDDWSKRDE--LP-GIKVIELTGDVTP 1013 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccCCC-----ccEEEEcCCchhhcccccchhhhcc--cC-CceeEeccCccCC
Confidence 45667899999999999998888887776654 568999998 454 44654432 22 4667777766544
Q ss_pred HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhh----cCCccEEEEeCCcccCCC
Q psy5647 244 EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLH----KNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~----~~~~~lvIiDEaH~lKn~ 298 (755)
+... + ...+++|||++.+-.....-. -..+.++|+||.|.++..
T Consensus 1014 d~~~-v----------~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1014 DVKA-V----------READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred Chhh-e----------ecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 3211 1 235799999998754332111 124678999999988653
No 311
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.44 E-value=9.8 Score=41.88 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.0
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
.++-.+|.-.+|.|||.++..++..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556788999999999999999887653
No 312
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=84.26 E-value=3.6 Score=48.01 Aligned_cols=131 Identities=18% Similarity=0.194 Sum_probs=65.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH----HHHHhCCCceEEEecCCCHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE----ITKWLGGRVAALPIDGGSKAE 244 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E----~~kw~~~~~~~~~~~~~~~~~ 244 (755)
.+-.+..-.=--|||..+..+++.++..-+. ..+++++|. .....--+| +++|++.... -.+.| ..
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~G-----i~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v-~~vkG-e~-- 324 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRG-----IKIGYTAHIRKATEPVFEEIGARLRQWFGASRV-DHVKG-ET-- 324 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCC-----CEEEEEcCcHHHHHHHHHHHHHHHhhhcchhhe-eeecC-cE--
Confidence 3445566677789999888888777644221 347888887 333333333 4567665221 11111 10
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecC
Q psy5647 245 IDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320 (755)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGT 320 (755)
+ .+.-..| ....+...|- .....+....+|++||||||.++...-....-...-.....|.+|-|
T Consensus 325 ----I-~i~f~nG--~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 325 ----I-SFSFPDG--SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ----E-EEEecCC--CccEEEEEec----cCCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecC
Confidence 0 0000000 0011222211 11223445589999999999997632111111222245667777755
No 313
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=84.24 E-value=2.2 Score=45.34 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
|-+-|..+|.+. .+.+++--..|+|||.+.+.-+..++..+.. ...++|+|+++..
T Consensus 1 l~~eQ~~~i~~~-----------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRST-----------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGV---PPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS------------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---TGGGEEEEESSHH
T ss_pred CCHHHHHHHhCC-----------CCCEEEEeCCCCCchHHHHHHHHHhhccccC---ChHHheecccCHH
Confidence 446788888751 3345666679999999999998888877642 2366999999954
No 314
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.20 E-value=7.1 Score=48.07 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 155 VKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 155 v~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
+..+.+.+.. ...++.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhc---CCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 6666664432 35678999999999999999988876653
No 315
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.99 E-value=18 Score=38.00 Aligned_cols=128 Identities=11% Similarity=0.198 Sum_probs=68.3
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC----cchHhHHHHHHHHhCCCceEEEecCCCHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS----SLVKNWCNEITKWLGGRVAALPIDGGSKAEID 246 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~----sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~ 246 (755)
....+.-..|.|||..+..++..+..++ .++.+|.-- ..+.||...... . .+.+... .
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~-------~~v~~i~~D~~ri~~~~ql~~~~~~-~--~~~~~~~--~------ 137 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK-------KTVGFITTDHSRIGTVQQLQDYVKT-I--GFEVIAV--R------ 137 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEecCCCCHHHHHHHHHHhhh-c--CceEEec--C------
Confidence 4566777899999998888877765433 234455432 345556433221 1 1111111 1
Q ss_pred HHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhc-CCccEEEEeCCcccCCCccHHHHHHHcc----cc-ccEEEeecC
Q psy5647 247 NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK-NEVGLVLCDEGHRLKNCESQTYQALMGL----KA-KRRVLLSGT 320 (755)
Q Consensus 247 ~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~-~~~~lvIiDEaH~lKn~~s~~~~al~~l----~~-~~rllLTGT 320 (755)
+.+.+......+.. .++|+||+|-+=+.-+.. .....+..+ .. ...+.|++|
T Consensus 138 ---------------------~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 138 ---------------------DEAAMTRALTYFKEEARVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSAS 195 (270)
T ss_pred ---------------------CHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCc
Confidence 11222222222322 368999999987764322 222222222 22 335678898
Q ss_pred CCcCCHHHHHHhhhhhcC
Q psy5647 321 PIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 321 PiqN~l~El~sll~fl~p 338 (755)
--.++..+....++-+.+
T Consensus 196 ~~~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 196 MKSKDMIEIITNFKDIHI 213 (270)
T ss_pred cCHHHHHHHHHHhCCCCC
Confidence 877777777666655544
No 316
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.99 E-value=13 Score=42.71 Aligned_cols=45 Identities=27% Similarity=0.147 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
-|...+..+...+...+ -.+..|+.-+.|.|||..|-.++..+..
T Consensus 20 Gq~~i~~~L~~~i~~~~--i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQR--VSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35555566655554211 1233578999999999999988877764
No 317
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.92 E-value=5.3 Score=46.63 Aligned_cols=27 Identities=26% Similarity=0.147 Sum_probs=22.5
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..+|.-..|+|||.-+-++...+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL 341 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 458899999999999988888877653
No 318
>KOG0442|consensus
Probab=83.81 E-value=25 Score=41.96 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCCCcHHHHhHhhhccCCC---CcEEEEEEeeCCCHHHHHHHHHHHHHHh-HhhhhCCch
Q psy5647 585 ANRLVMFDPDWNPANDDQAMARVWRDGQK---KPCFVYRFLSTGSIEEKMMQRQAHKKAL-SSCVVDCEE 650 (755)
Q Consensus 585 a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~---k~V~Vyrlv~~gTiEEkI~~r~~~K~~l-~~~vv~~~~ 650 (755)
-..||+|+++-++..- +-.++-. +...||.+...+|+||.-|.....+... ...+++...
T Consensus 545 P~yvi~y~~~~~~vRq------iEvYka~~p~~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIre~s 608 (892)
T KOG0442|consen 545 PRYVIMYESDLTFVRQ------IEVYKATRPFRSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIREKS 608 (892)
T ss_pred CceEEEEcCCCCceee------eeeeeccCCCCCceEEEEEecCchHHHHHHHHHHHhHHHHHHHHhhcc
Confidence 4568999998766432 2233333 4567999999999999887766655443 334444443
No 319
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.27 E-value=7.9 Score=45.20 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.1
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..|+.-+.|.|||..|-+++..+...
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 346899999999999999999888754
No 320
>PF13173 AAA_14: AAA domain
Probab=83.17 E-value=7 Score=35.82 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=25.7
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
+..+|++||+|++.+.....- .+..-....++++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk-~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALK-FLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhccHHHHHH-HHHHhccCceEEEEccchH
Confidence 567899999999976322222 2222224578999998643
No 321
>PRK08181 transposase; Validated
Probab=82.75 E-value=7.7 Score=40.73 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
+-+-|..++..+-+.+ ..+.+.+|.-+.|+|||.-+.++...+...+
T Consensus 88 ~~~~~~~~L~~~~~~~-----~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g 134 (269)
T PRK08181 88 VSKAQVMAIAAGDSWL-----AKGANLLLFGPPGGGKSHLAAAIGLALIENG 134 (269)
T ss_pred CCHHHHHHHHHHHHHH-----hcCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence 3456666664432111 4567899999999999999999998887765
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.10 E-value=15 Score=41.04 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=37.0
Q ss_pred hhhcCCccEEEEeCCcccCCCccHHHHHHHcc--------ccccEEEeecCCCcCCHHHHHHhhhhhcC
Q psy5647 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGL--------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 278 ~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l--------~~~~rllLTGTPiqN~l~El~sll~fl~p 338 (755)
.+...++|+||||=+-+.-+.. .....+..+ .....+.|++|--++++.+....+..+.+
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~-~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNL-EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCH-HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 3334578999999776653322 222333222 22456889999877777777776665554
No 323
>KOG0780|consensus
Probab=81.59 E-value=5.2 Score=43.39 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=32.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHh
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWL 228 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~ 228 (755)
++++-=-|.|||-+|.-+++++.++|- ++.+||--.-..---++++.|.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~-------K~~LvcaDTFRagAfDQLkqnA 152 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGY-------KVALVCADTFRAGAFDQLKQNA 152 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCC-------ceeEEeecccccchHHHHHHHh
Confidence 445666799999999999999888763 2455554443333334555554
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=81.58 E-value=9.9 Score=38.86 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=37.0
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
..+.-++++-+.|+|||.-+..+++.....+ .++++|.-..-.....+.+..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g-------~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQG-------KKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCC-------CEEEEEEcCCCHHHHHHHHHH
Confidence 4456678899999999999999998876654 347777765444444444443
No 325
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=81.53 E-value=10 Score=41.56 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=19.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMW 192 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~ 192 (755)
..-...||.-..|+|||-.|-.+..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999987766654
No 326
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.39 E-value=13 Score=39.99 Aligned_cols=52 Identities=13% Similarity=-0.048 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.++|+|....+.+...+... .-....++.-..|+||+..|..++..++...+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~--rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~ 54 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAG--RIPGALLLQSDEGLGVESLVELFSRALLCQNY 54 (319)
T ss_pred cCcccHHHHHHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 46788888888877766432 23456788999999999999999999987654
No 327
>PRK13342 recombination factor protein RarA; Reviewed
Probab=81.32 E-value=11 Score=42.25 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=20.1
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~ 193 (755)
.....||.-+.|+|||..+-++...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999888877654
No 328
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=81.00 E-value=17 Score=37.20 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=31.2
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+.-.++.-+.|+|||.-+..+++.+.+++ .+++.|+...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-------~~~~yi~~e~ 62 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-------YSVSYVSTQL 62 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-------CcEEEEeCCC
Confidence 3455678899999999999999998887655 2367777553
No 329
>KOG0991|consensus
Probab=80.97 E-value=3.6 Score=41.58 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=24.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
.+-.+.|++-..|.|||-.+.+++..++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4567899999999999999999998887
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=80.68 E-value=13 Score=40.41 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
++|+|...-+.+... .| .-..+.++.-..|.|||..|..++..++...+
T Consensus 2 ~yPW~~~~~~~l~~~-~~---rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~ 50 (342)
T PRK06964 2 LYPWQTDDWNRLQAL-RA---RLPHALLLHGQAGIGKLDFAQHLAQGLLCETP 50 (342)
T ss_pred CCcccHHHHHHHHHh-cC---CcceEEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 468777777766553 22 33457778999999999999999999987654
No 331
>PRK11054 helD DNA helicase IV; Provisional
Probab=80.54 E-value=3.7 Score=49.08 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=46.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
..|-|-|+++|.. .. +.+++-...|+|||.+.++-+.+++..+.. . ...+|+++.+.-..+..+
T Consensus 195 ~~L~~~Q~~av~~----------~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-~--~~~IL~ltft~~AA~em~ 258 (684)
T PRK11054 195 SPLNPSQARAVVN----------GE-DSLLVLAGAGSGKTSVLVARAGWLLARGQA-Q--PEQILLLAFGRQAAEEMD 258 (684)
T ss_pred CCCCHHHHHHHhC----------CC-CCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-C--HHHeEEEeccHHHHHHHH
Confidence 5689999999963 22 345555679999999999999888876532 1 256899999865554433
No 332
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=80.50 E-value=10 Score=38.69 Aligned_cols=38 Identities=26% Similarity=0.570 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE-e-CCcchHhHHHHH
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV-A-PSSLVKNWCNEI 224 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV-~-P~sll~nW~~E~ 224 (755)
|.|||-.++++...+..+|. ++.|| + |..-+..|.+-.
T Consensus 12 GaGKTT~~~~LAs~la~~G~-------~V~lIDaDpn~pl~~W~~~a 51 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGA-------RVALIDADPNQPLAKWAENA 51 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCC-------eEEEEeCCCCCcHHHHHHhc
Confidence 89999999999999988873 24444 4 666677885544
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.15 E-value=35 Score=36.83 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
..+.-..|.|||.++..++..+...+ ++++++.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-------~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-------KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CeEEEEe
Confidence 34566999999999999988776543 2356665
No 334
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=80.10 E-value=0.89 Score=48.51 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
.-|-|..-+..+.+... ..|. . .-|+|||+-+.+.....+..+. ++++|..=|
T Consensus 129 kt~~Q~~y~eai~~~di------~fGi--G-pAGTGKTyLava~av~al~~~~-----v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEHDI------VFGI--G-PAGTGKTYLAVAKAVDALGAGQ-----VRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhcCe------eeee--c-ccccCChhhhHHhHhhhhhhcc-----cceeeecCc
Confidence 34678877777765332 1121 1 6799999999999988887764 455666656
No 335
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=79.94 E-value=5.1 Score=36.31 Aligned_cols=36 Identities=25% Similarity=0.181 Sum_probs=25.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
+|--+.|+|||..+-.++..+- .+++.+....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~----------~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG----------FPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT----------SEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhcc----------cccccccccccccc
Confidence 5667899999999988887651 23566666665544
No 336
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=79.76 E-value=15 Score=49.41 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=44.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
..|-+-|+++|.-++. +..+=.||--.-|+|||-.+-+++..+...| .++++++|+.-.
T Consensus 428 ~~Ls~~Q~~Av~~il~-------s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G-------~~V~~lAPTgrA 486 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT-------STKRFIIINGFGGTGSTEIAQLLLHLASEQG-------YEIQIITAGSLS 486 (1960)
T ss_pred CCCCHHHHHHHHHHHh-------CCCCeEEEEECCCCCHHHHHHHHHHHHHhcC-------CeEEEEeCCHHH
Confidence 4688999999987764 3445577888899999988777776554444 458999999644
No 337
>PRK10867 signal recognition particle protein; Provisional
Probab=79.34 E-value=33 Score=38.63 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=22.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
-.++.-..|.|||.++.-++..+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 35778899999999999999888766
No 338
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.66 E-value=15 Score=40.07 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|.+.++.+...+... .-.+..||.-+.|+|||..+-+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444455554444211 122346889999999999999988887654
No 339
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=78.52 E-value=4.3 Score=46.57 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+|++|.-++|+|||..+-+++..+..
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 45679999999999999999988877643
No 340
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=78.13 E-value=13 Score=44.49 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEIT 225 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~ 225 (755)
|-|-|+++|.+ ..+.+++--..|+|||.+.+.-+..++..... . .+.+|+|+.+ ....+-.+.+.
T Consensus 2 Ln~~Q~~av~~-----------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-~--p~~IL~vTFt~~Aa~em~~Rl~ 67 (664)
T TIGR01074 2 LNPQQQEAVEY-----------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-K--ARNIAAVTFTNKAAREMKERVA 67 (664)
T ss_pred CCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-C--HHHeEEEeccHHHHHHHHHHHH
Confidence 67889998864 23457777799999999999999998864321 1 2557888765 44444444444
Q ss_pred HH
Q psy5647 226 KW 227 (755)
Q Consensus 226 kw 227 (755)
+.
T Consensus 68 ~~ 69 (664)
T TIGR01074 68 KT 69 (664)
T ss_pred HH
Confidence 43
No 341
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=78.09 E-value=27 Score=33.58 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=34.7
Q ss_pred CCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcC
Q psy5647 282 NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 282 ~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p 338 (755)
..+|+||+|=...+. .... .+..+.....+++..+|-..++.+...+++++..
T Consensus 66 ~~yD~VIiD~pp~~~---~~~~-~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTG---DEHL-TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCc---HHHH-HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 479999999877642 1111 1222234456666668888888888888887753
No 342
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=78.03 E-value=13 Score=34.86 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=37.2
Q ss_pred EEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCC--CCEEEEeCCCCC
Q psy5647 542 VRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIG--ANRLVMFDPDWN 596 (755)
Q Consensus 542 ~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~--a~~vI~~D~~WN 596 (755)
+.+.| .+..+..++++.|.+.... .+|+++....+|+|+.+ +..||+.-.|+-
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 34444 3444678899999874332 35677666999999975 678888887864
No 343
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=77.85 E-value=29 Score=39.48 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=35.2
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.+.-.+|+-++|.|||..++.++..+...+ .++|.|.......|.....
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-------~kvlYvs~EEs~~qi~~ra 141 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ-------MKVLYVSGEESLQQIKMRA 141 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECcCCHHHHHHHH
Confidence 344478899999999999999888776543 2478888765555554433
No 344
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=77.83 E-value=15 Score=48.29 Aligned_cols=137 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
+...|-+-|++++..+.. ...+-++|---.|+|||.+.-+++..+.......+ .+++.++|+.-.. +
T Consensus 964 ~~~~Lt~~Q~~Av~~il~-------s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~---~~V~glAPTgrAA---k 1030 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILE-------STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESER---PRVVGLGPTHRAV---G 1030 (1747)
T ss_pred hcCCCCHHHHHHHHHHHh-------CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccC---ceEEEECCcHHHH---H
Confidence 345688999999988764 33456788889999999887666655432211111 2367789985332 2
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
++.. .+ +. . ..+..|+... +.+... ........+++||||+-.+-+. ..
T Consensus 1031 ~L~e-~G--i~---------A---~TI~s~L~~~-------------~~~~~~-~~~~~~~~~llIVDEaSMv~~~--~m 1079 (1747)
T PRK13709 1031 EMRS-AG--VD---------A---QTLASFLHDT-------------QLQQRS-GETPDFSNTLFLLDESSMVGNT--DM 1079 (1747)
T ss_pred HHHh-cC--cc---------h---hhHHHHhccc-------------cccccc-ccCCCCCCcEEEEEccccccHH--HH
Confidence 3322 11 10 1 1122222110 000000 0011134589999999988443 23
Q ss_pred HHHHHccc-cccEEEeecCCCc
Q psy5647 303 YQALMGLK-AKRRVLLSGTPIQ 323 (755)
Q Consensus 303 ~~al~~l~-~~~rllLTGTPiq 323 (755)
...+..+. ...|++|.|=+-|
T Consensus 1080 ~~Ll~~~~~~garvVLVGD~~Q 1101 (1747)
T PRK13709 1080 ARAYALIAAGGGRAVSSGDTDQ 1101 (1747)
T ss_pred HHHHHhhhcCCCEEEEecchHh
Confidence 33333343 3578999997766
No 345
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=77.81 E-value=43 Score=37.63 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=21.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..|+--.|.|||-++.-++..+...+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45778899999999999988776554
No 346
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=77.78 E-value=5.9 Score=38.64 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=35.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
.+++-+.|+|||..+..++....+.+ .+++++.......+..+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-------~~v~~~s~e~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-------EPGLYVTLEESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-------CcEEEEECCCCHHHHHHHHHH
Confidence 46788999999999999998887665 347888877666665555443
No 347
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=77.31 E-value=23 Score=41.82 Aligned_cols=36 Identities=11% Similarity=0.011 Sum_probs=24.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
-++.-+=|-|||..+..++..+..... .++++.+|.
T Consensus 190 tV~taPRqrGKS~iVgi~l~~La~f~G------i~IlvTAH~ 225 (752)
T PHA03333 190 TAATVPRRCGKTTIMAIILAAMISFLE------IDIVVQAQR 225 (752)
T ss_pred eEEEeccCCCcHHHHHHHHHHHHHhcC------CeEEEECCC
Confidence 345557899999988866655543211 348999996
No 348
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=77.05 E-value=55 Score=34.45 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
.++.-..|.|||-++.-++..+...+ +++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-------~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-------KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEe
Confidence 45667999999999999998876554 3466665
No 349
>PRK04195 replication factor C large subunit; Provisional
Probab=76.97 E-value=18 Score=41.55 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.3
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l 194 (755)
...++|.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5789999999999999888877554
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.95 E-value=41 Score=38.78 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=20.7
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
++-..|.-..|.|||..+..++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3344566789999999998888766554
No 351
>PHA00012 I assembly protein
Probab=76.86 E-value=7.7 Score=41.49 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~~ 199 (755)
+---+|.|||+.|+.-+...+++|.
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~~Gr 30 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLVKGC 30 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHHcCC
Confidence 4456899999999998888888873
No 352
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=76.70 E-value=10 Score=43.47 Aligned_cols=132 Identities=21% Similarity=0.275 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC-CCCCCCCCeEEEEeCCcchHhHHHHHHHHhC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG-PLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~-~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~ 229 (755)
|...+..|...+... .-.++.++.-.=|+|||-.|=.++..+.... +.+.| ...|..- .++.. |
T Consensus 21 Qe~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP-----C~~C~~C------k~I~~--g 85 (515)
T COG2812 21 QEHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP-----CGKCISC------KEINE--G 85 (515)
T ss_pred cHHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc-----chhhhhh------Hhhhc--C
Confidence 444444554444322 2346778888999999999998888887665 33333 2223221 33322 1
Q ss_pred CCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHcc
Q psy5647 230 GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL 309 (755)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l 309 (755)
..+.++.++..+...+ ..++.+.+..... -...++.+.||||+|.+ .+..+.++...
T Consensus 86 ~~~DviEiDaASn~gV-ddiR~i~e~v~y~-------------------P~~~ryKVyiIDEvHML---S~~afNALLKT 142 (515)
T COG2812 86 SLIDVIEIDAASNTGV-DDIREIIEKVNYA-------------------PSEGRYKVYIIDEVHML---SKQAFNALLKT 142 (515)
T ss_pred CcccchhhhhhhccCh-HHHHHHHHHhccC-------------------CccccceEEEEecHHhh---hHHHHHHHhcc
Confidence 2244455544332211 1122222211100 01357889999999998 34555565443
Q ss_pred ---ccccEEEeecC
Q psy5647 310 ---KAKRRVLLSGT 320 (755)
Q Consensus 310 ---~~~~rllLTGT 320 (755)
+..+.+.+=||
T Consensus 143 LEEPP~hV~FIlAT 156 (515)
T COG2812 143 LEEPPSHVKFILAT 156 (515)
T ss_pred cccCccCeEEEEec
Confidence 45566555555
No 353
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=76.67 E-value=9.3 Score=46.21 Aligned_cols=56 Identities=21% Similarity=0.101 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
.|-|-|+++|.. ..+.+++-...|+|||.+.+.-+.+++..... . ...+|+|+.+.
T Consensus 4 ~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v-~--p~~IL~lTFTn 59 (715)
T TIGR01075 4 GLNDKQREAVAA-----------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA-S--PHSIMAVTFTN 59 (715)
T ss_pred ccCHHHHHHHcC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-C--HHHeEeeeccH
Confidence 588999999963 23457777899999999999999999875322 1 25688888863
No 354
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=76.44 E-value=15 Score=37.69 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe--CCcchHhHHH
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA--PSSLVKNWCN 222 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~--P~sll~nW~~ 222 (755)
|.|||..++.+...+.+.|. +++||- |...+..|..
T Consensus 12 GvGKTT~a~nLA~~la~~G~-------~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 12 GAGKTTALMGLCAALASDGK-------RVALFEADENRPLTRWKE 49 (231)
T ss_pred CccHHHHHHHHHHHHHhCCC-------cEEEEeCCCCCCHHHHHH
Confidence 89999999999999887763 355553 4555667754
No 355
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=76.23 E-value=21 Score=36.12 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=36.1
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
+.-.+++-+.|.|||..+..++...+..+ .++++|+-..-..+-.+.+..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g-------~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNG-------EKAMYISLEEREERILGYAKS 65 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCHHHHHHHHHH
Confidence 44567888999999999999988877654 347888877655554444433
No 356
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=76.01 E-value=14 Score=36.27 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=38.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCC---CCCCeEEEEeCCcchHhHHHHHHHHhC
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAK---PLIDKAIIVAPSSLVKNWCNEITKWLG 229 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~---p~~~~~LIV~P~sll~nW~~E~~kw~~ 229 (755)
=++++-+.|.|||..++.++..+....+... +...++|+|..-.-..++.+-+..+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQ 94 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhc
Confidence 3688889999999999999998885433211 123578888887666677777766653
No 357
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=75.87 E-value=16 Score=47.42 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=74.1
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
+...|-+-|++++..++. ...+-+++--..|+|||.+.-+++..+.......+ ..++.++|++-.. .
T Consensus 832 ~~~~Lt~~Qr~Av~~iLt-------s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g---~~V~glAPTgkAa---~ 898 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILE-------TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESER---PRVVGLGPTHRAV---G 898 (1623)
T ss_pred hhcccCHHHHHHHHHHHh-------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccC---ceEEEEechHHHH---H
Confidence 345789999999987754 23445788889999999987655544322111111 2467788985332 2
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
++.. .+. .. ..+..|..... .+.. ...-.....+++|||||-.+-+. ..
T Consensus 899 ~L~e-~Gi-----------~A---~TIasfL~~~~-------------~~~~-~~~~~~~~~~llIVDEASMV~~~--~m 947 (1623)
T PRK14712 899 EMRS-AGV-----------DA---QTLASFLHDTQ-------------LQQR-SGETPDFSNTLFLLDESSMVGNT--DM 947 (1623)
T ss_pred HHHH-hCc-----------hH---hhHHHHhcccc-------------chhh-cccCCCCCCcEEEEEccccccHH--HH
Confidence 3322 110 01 11222221100 0000 00001124589999999988542 22
Q ss_pred HHHHHccc-cccEEEeecCCCcC
Q psy5647 303 YQALMGLK-AKRRVLLSGTPIQN 324 (755)
Q Consensus 303 ~~al~~l~-~~~rllLTGTPiqN 324 (755)
...+..+. ...|++|.|=+-|.
T Consensus 948 ~~ll~~~~~~garvVLVGD~~QL 970 (1623)
T PRK14712 948 ARAYALIAAGGGRAVASGDTDQL 970 (1623)
T ss_pred HHHHHhhhhCCCEEEEEcchhhc
Confidence 33333333 35789999987664
No 358
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=75.38 E-value=20 Score=37.45 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQ-GPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~-~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.+.-++++-..|.|||..++.++..+... + .+++++.-..-..+....+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g-------~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG-------VRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC-------ceEEEEEcccCHHHHHHHH
Confidence 34457899999999999999998887655 3 3477877654444444433
No 359
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=75.27 E-value=9 Score=39.46 Aligned_cols=31 Identities=35% Similarity=0.716 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE--eCCcch
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV--APSSLV 217 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV--~P~sll 217 (755)
|.|||-.+.++.+.+.+.|. ++|+| +|.+++
T Consensus 12 GvG~TTltAnLA~aL~~~G~-------~VlaID~dpqN~L 44 (243)
T PF06564_consen 12 GVGKTTLTANLAWALARLGE-------SVLAIDLDPQNLL 44 (243)
T ss_pred CCCHHHHHHHHHHHHHHCCC-------cEEEEeCCcHHHH
Confidence 89999999999999998874 35555 355554
No 360
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=75.12 E-value=20 Score=43.10 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~ 193 (755)
.....||.-+.|+|||..+-++...
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999888877644
No 361
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.03 E-value=20 Score=40.70 Aligned_cols=46 Identities=20% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|...+.++...+... .-.+..|+.-+.|+|||..|.+++..+....
T Consensus 22 q~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~ 67 (451)
T PRK06305 22 QDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQN 67 (451)
T ss_pred cHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCC
Confidence 555666666555321 1134568899999999999999998887643
No 362
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=74.74 E-value=57 Score=32.19 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=40.4
Q ss_pred hhhhcCCccEEEEeCCcccCCCc----cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhc
Q psy5647 277 SVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337 (755)
Q Consensus 277 ~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~ 337 (755)
..+....||+||+||.-..-... ...-..+..-+..--+++||.-.+..+-|+..++.-+.
T Consensus 116 ~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm~ 180 (198)
T COG2109 116 EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEMR 180 (198)
T ss_pred HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhcc
Confidence 45566789999999976533322 33334444445566799999877777777777665543
No 363
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=74.73 E-value=28 Score=37.76 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.|...++.+...+... .-.+..|+.-+-|.|||..|..++..++...
T Consensus 10 ~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 10 LQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred hHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 4555555555544321 1234458999999999999999998887654
No 364
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.64 E-value=9.9 Score=43.54 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhcccc----cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 149 PHQREGVKFMYECVTGVRI----EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~----~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
|+|+..+..+ .|.+. ...+-++|.-.=|-|||..+.+++.+.+--.+... ..++++++.
T Consensus 1 PwQ~fi~~~i----~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~---~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSI----FGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPG---AEIYCAANT 63 (477)
T ss_pred CcHHHHHHHH----hceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccC---ceEEEEeCC
Confidence 6787544444 33211 12344788888999999988887665553322111 225566665
No 365
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.52 E-value=27 Score=40.08 Aligned_cols=52 Identities=15% Similarity=0.069 Sum_probs=38.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~k 226 (755)
..+.-.++.-+.|.|||.-++-+++...+++. ++++|.----..|-......
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-------~~~y~s~eEs~~~i~~~~~~ 312 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKE-------RAILFAYEESRAQLLRNAYS 312 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEeeCCHHHHHHHHHH
Confidence 45556899999999999999999998887663 37888766555555555443
No 366
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=73.52 E-value=29 Score=35.20 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=22.2
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
...+|.-+.|+|||--.-|+...+.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 34789999999999877777766666543
No 367
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=73.52 E-value=7.4 Score=44.63 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
++.+-|-+.+++ ..+.-.|+--..|+|||-.|+-=+.+|+..... ....+++||+.|+-+.......+
T Consensus 212 TIQkEQneIIR~----------ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~-~l~~k~vlvl~PN~vFleYis~V 279 (747)
T COG3973 212 TIQKEQNEIIRF----------EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-PLQAKPVLVLGPNRVFLEYISRV 279 (747)
T ss_pred HhhHhHHHHHhc----------cCCCeEEEecCCCCCchhHHHHHHHHHHhcccc-ccccCceEEEcCcHHHHHHHHHh
Confidence 344566666654 344445667788999999999877777654322 11234599999998876665554
No 368
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=73.24 E-value=43 Score=36.05 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|.++++.+...+... .-....++.-+.|.||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 455566665555321 1236788999999999999999999988664
No 369
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.89 E-value=29 Score=41.10 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=22.0
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..|+.-+.|.|||..+..++..+...
T Consensus 40 hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 447899999999999888888777644
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.86 E-value=62 Score=36.46 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
-.+++-..|.|||.++.-++..+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 467899999999999999998875
No 371
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=72.79 E-value=15 Score=44.50 Aligned_cols=57 Identities=19% Similarity=0.128 Sum_probs=42.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..|-|-|+++|.. ..+.+++-...|+|||.+.+.-+.+++..... . ...+|+|+-+.
T Consensus 8 ~~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-~--p~~IL~lTFT~ 64 (721)
T PRK11773 8 DSLNDKQREAVAA-----------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-S--PYSIMAVTFTN 64 (721)
T ss_pred HhcCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-C--hhHeEeeeccH
Confidence 3588999999964 23456667789999999999999998864322 1 25678888763
No 372
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=72.46 E-value=22 Score=42.77 Aligned_cols=93 Identities=17% Similarity=0.202 Sum_probs=61.6
Q ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEEEechhHHH----HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEE
Q psy5647 495 LSAKLMVLD-TMLAVIKMTTDDKIVLVSNYTQTLD----LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569 (755)
Q Consensus 495 ~S~Kl~~L~-~lL~~~~~~~~~KvlIFs~~~~~ld----~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~ 569 (755)
.|||..+.. .++..+. .+.+++|.+....... .+.+++...|+++..++|+++.++|.++++...++... |+
T Consensus 292 GSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~-Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD-IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC-EE
Confidence 478876443 3334333 4779999998876544 45556666689999999999999999999988875444 45
Q ss_pred EeecCCcccccccCCCCEEEE
Q psy5647 570 MLSSKAGGCGLNLIGANRLVM 590 (755)
Q Consensus 570 LlSt~agg~GLNL~~a~~vI~ 590 (755)
+.+.......+.+.....||+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EchHHHhcccchhcccceEEE
Confidence 444444444555555444443
No 373
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=72.43 E-value=15 Score=35.97 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.4
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
...|+.-+.|.|||-.+..++..++..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 457889999999999999999888764
No 374
>PRK08939 primosomal protein DnaI; Reviewed
Probab=72.42 E-value=11 Score=40.56 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.+.|.+|.-.+|+|||..+.|++..+...+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g 184 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG 184 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 457889999999999999999999998765
No 375
>PRK06904 replicative DNA helicase; Validated
Probab=72.34 E-value=68 Score=36.68 Aligned_cols=115 Identities=13% Similarity=0.169 Sum_probs=62.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecC-C-CHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDG-G-SKAEIDNKL 249 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~-~-~~~~~~~~l 249 (755)
+|||--+|.|||.-++.++....... + .++++++.---..++..-+..-..+ ....+. .+ . +..+. ..+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~--g----~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~-~g~~l~~~e~-~~~ 295 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMAS--E----KPVLVFSLEMPAEQIMMRMLASLSRVDQTKIR-TGQNLDQQDW-AKI 295 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhc--C----CeEEEEeccCCHHHHHHHHHHhhCCCCHHHhc-cCCCCCHHHH-HHH
Confidence 68999999999999988887665331 1 3488988876666666554332221 111111 12 1 22222 222
Q ss_pred HHHHHHhCCCCCCCEEEE-----ehhhHhhhhhhhhc--CCccEEEEeCCcccCC
Q psy5647 250 NSFMQTYGRRPVNPILVI-----SYETFRSHASVLHK--NEVGLVLCDEGHRLKN 297 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l~~--~~~~lvIiDEaH~lKn 297 (755)
........ ...++.|. |.+.++.....+.. .+.++||||=-|.+..
T Consensus 296 ~~a~~~l~--~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 296 SSTVGMFK--QKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 22222111 11235552 34445544433322 3589999998888864
No 376
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=72.25 E-value=39 Score=34.46 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
.+.=.+|+-..|.|||.-++.++........ .++++++.-
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g------~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG------KPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CceEEEeCC
Confidence 3444688999999999999999988877621 247888844
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=72.21 E-value=27 Score=36.39 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=29.2
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
.+.-.+++-+.|+|||.-|..+++....++. ++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge-------~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGN-------PVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCC-------cEEEEEe
Confidence 3445678999999999999999888766542 3677773
No 378
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=72.17 E-value=6.7 Score=46.99 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
.|-|-|+++|.+ ..+.+++-...|+|||.+.+.-+..++..... . ..++|+|+.+.
T Consensus 2 ~Ln~~Q~~av~~-----------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-~--p~~IL~lTFT~ 57 (672)
T PRK10919 2 RLNPGQQQAVEF-----------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-Q--ARHIAAVTFTN 57 (672)
T ss_pred CCCHHHHHHHhC-----------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-C--HHHeeeEechH
Confidence 477899999974 23456666789999999999999999865321 1 25688888873
No 379
>PRK08506 replicative DNA helicase; Provisional
Probab=72.10 E-value=61 Score=37.05 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=60.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHH-hCCCceEEEecCCCHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW-LGGRVAALPIDGGSKAEIDNKLN 250 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw-~~~~~~~~~~~~~~~~~~~~~l~ 250 (755)
=.|+|-.+|.|||.-++.++......+ .++++++.---..+....+..- .+-....+. .+.-.......+.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g-------~~V~~fSlEMs~~ql~~Rlla~~s~v~~~~i~-~~~l~~~e~~~~~ 265 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQD-------KGVAFFSLEMPAEQLMLRMLSAKTSIPLQNLR-TGDLDDDEWERLS 265 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcC-------CcEEEEeCcCCHHHHHHHHHHHhcCCCHHHHh-cCCCCHHHHHHHH
Confidence 368999999999999999998776543 3478887775555555444222 111111111 1111111112222
Q ss_pred HHHHHhCCCCCCCEEEE-----ehhhHhhhhhhhhc--CCccEEEEeCCcccCC
Q psy5647 251 SFMQTYGRRPVNPILVI-----SYETFRSHASVLHK--NEVGLVLCDEGHRLKN 297 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l~~--~~~~lvIiDEaH~lKn 297 (755)
....... ..+++|. |.+.++.....+.. .+.++||||=-|.+..
T Consensus 266 ~a~~~l~---~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 266 DACDELS---KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHH---cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 2222111 1245553 23334433333322 3589999999888763
No 380
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.02 E-value=61 Score=35.85 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcc-------cccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 152 REGVKFMYECVTGV-------RIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 152 ~egv~~l~~~~~g~-------~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.+...|+++.+... ....+.-..++-..|.|||-++..++..+..++
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g 234 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQN 234 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34555666655432 112233456788899999999999988776654
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=72.02 E-value=25 Score=37.22 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=21.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
-.++.-..|.|||.++..++..+...
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45678899999999999998887654
No 382
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=72.01 E-value=22 Score=40.62 Aligned_cols=179 Identities=18% Similarity=0.123 Sum_probs=89.6
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCc-----CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAY-----GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~-----g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
|.....|-|||+..+ .++.|.+..+.+ -+++...=|=|||-.+.+++++.+--... ....+.|++|+-
T Consensus 56 ~~~p~~l~PwQkFii----a~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~---~~~~~~i~A~s~ 128 (546)
T COG4626 56 PGFPESLEPWQKFIV----AALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR---SGAGIYILAPSV 128 (546)
T ss_pred CCCccccchHHHHHH----HHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh---cCCcEEEEeccH
Confidence 445568999998555 455555433322 26888899999999888887765533221 123478888873
Q ss_pred ch-HhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhh-------HhhhhhhhhcCCccEE
Q psy5647 216 LV-KNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET-------FRSHASVLHKNEVGLV 287 (755)
Q Consensus 216 ll-~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~-------l~~~~~~l~~~~~~lv 287 (755)
-. .+=-++++.-.-. . . .. ..+.. ...+.+. +.+.. +......+......++
T Consensus 129 ~qa~~~F~~ar~mv~~------~--~---~l-~~~~~-------~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~ 188 (546)
T COG4626 129 EQAANSFNPARDMVKR------D--D---DL-RDLCN-------VQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGA 188 (546)
T ss_pred HHHHHhhHHHHHHHHh------C--c---ch-hhhhc-------cccceeE-EEecccceeeeeeccCCCcccCCCcceE
Confidence 21 1211222111110 0 0 00 00000 0111222 22221 1223455666788999
Q ss_pred EEeCCcccCCCccHHHHHH-Hcc---ccccEEEee--cCCCcCCHHHHHHhhhhhcCCCCCChHHH
Q psy5647 288 LCDEGHRLKNCESQTYQAL-MGL---KAKRRVLLS--GTPIQNDLLEYFSLVHFVNQGILGTAQEF 347 (755)
Q Consensus 288 IiDEaH~lKn~~s~~~~al-~~l---~~~~rllLT--GTPiqN~l~El~sll~fl~p~~l~~~~~F 347 (755)
|+||-|..++.. ..+..+ ..+ +-...+..| |-|...-+.+.+....-+.-|...+...|
T Consensus 189 I~DEih~f~~~~-~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f 253 (546)
T COG4626 189 IIDELHLFGKQE-DMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPHFF 253 (546)
T ss_pred EEehhhhhcCHH-HHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCCcceE
Confidence 999999998875 343333 333 222333333 44444444555544444444433333333
No 383
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=71.96 E-value=11 Score=38.34 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=39.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEeCCcchHhHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQ-GPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~-~~~~~p~~~~~LIV~P~sll~nW~~E~~kw 227 (755)
..+.-.+++-+.|+|||.-+.-+++..++. +. +++.|+-..-..++.+.+..+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge-------~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE-------KVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT---------EEEEESSS-HHHHHHHHHTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC-------cEEEEEecCCHHHHHHHHHHc
Confidence 456667889999999999999999988877 63 478888666666666666544
No 384
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=71.35 E-value=26 Score=38.58 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHHH-hhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 146 ILRPHQREGVKFMYEC-VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~-~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.-|.-|.+.+...+.- +.| ....++++.-.+|+|||.++--++..+....+
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 20 PHREEEINQLASFLAPALRG---ERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred cccHHHHHHHHHHHHHHhcC---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 3456777777654443 333 23445899999999999999988888776543
No 385
>PHA00350 putative assembly protein
Probab=71.03 E-value=11 Score=41.80 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=17.5
Q ss_pred EEcCCCCcHHHHHHHH-HHHHHHcC
Q psy5647 175 MADEMGLGKTLQCITL-MWTLLRQG 198 (755)
Q Consensus 175 LADemGlGKTlqaIal-l~~l~~~~ 198 (755)
+---.|+|||+-|+.. +...++.|
T Consensus 6 ~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 6 IVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EecCCCCchhHHHHHHHHHHHHHCC
Confidence 3346799999999984 55566665
No 386
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=70.83 E-value=6.3 Score=39.99 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=17.6
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~ 193 (755)
-..+||.-..|+|||--|-.++..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhc
Confidence 346899999999999766655543
No 387
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=70.59 E-value=14 Score=41.22 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=25.1
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH-HHHcC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT-LLRQG 198 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~-l~~~~ 198 (755)
..+.+.|+--..|+|||..+.++... .+..|
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 57789999999999999988887665 45454
No 388
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.40 E-value=23 Score=39.38 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=27.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
.+++-=-|+|||-+|.=++.++.+++ +++++||--.
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~-------~kvllVaaD~ 138 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKG-------KKVLLVAADT 138 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcC-------CceEEEeccc
Confidence 56777889999999999999998854 3456666443
No 389
>PRK08760 replicative DNA helicase; Provisional
Probab=69.98 E-value=67 Score=36.80 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=62.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEe-cCCCHHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPI-DGGSKAEIDNKLNS 251 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~-~~~~~~~~~~~l~~ 251 (755)
.|||-.+|.|||.-++.++........ .++++++.---..+|...+.....+ +....+ .+....+....+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g------~~V~~fSlEMs~~ql~~Rl~a~~s~-i~~~~i~~g~l~~~e~~~~~~ 304 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSK------KGVAVFSMEMSASQLAMRLISSNGR-INAQRLRTGALEDEDWARVTG 304 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcC------CceEEEeccCCHHHHHHHHHHhhCC-CcHHHHhcCCCCHHHHHHHHH
Confidence 689999999999999999887653311 2478888887777887766544322 111111 11111111112222
Q ss_pred HHHHhCCCCCCCEEEEe-----hhhHhhhhhhh-hcCCccEEEEeCCcccC
Q psy5647 252 FMQTYGRRPVNPILVIS-----YETFRSHASVL-HKNEVGLVLCDEGHRLK 296 (755)
Q Consensus 252 ~~~~~~~~~~~~VlI~s-----ye~l~~~~~~l-~~~~~~lvIiDEaH~lK 296 (755)
...... ..+++|.. .+.++.....+ ...+.++||||=.+.++
T Consensus 305 a~~~l~---~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 305 AIKMLK---ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHh---cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 222111 12455543 23333333322 23568999999888775
No 390
>CHL00176 ftsH cell division protein; Validated
Probab=69.91 E-value=19 Score=42.77 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~ 193 (755)
...|++|.-+.|+|||..|=+++..
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999888654
No 391
>PRK04132 replication factor C small subunit; Provisional
Probab=69.72 E-value=21 Score=43.64 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=27.7
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc----ccccEEEeecCCCcCCHHHH
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL----KAKRRVLLSGTPIQNDLLEY 329 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l----~~~~rllLTGTPiqN~l~El 329 (755)
++.+||+||+|++-. ....++..+ ....+++|+.++...-+.-+
T Consensus 630 ~~KVvIIDEaD~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI 677 (846)
T PRK04132 630 SFKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677 (846)
T ss_pred CCEEEEEECcccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH
Confidence 478999999999943 223333332 45678888877755443333
No 392
>KOG0744|consensus
Probab=69.61 E-value=26 Score=37.45 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=37.6
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
..+..+|..|=..++.|--..+.-.-+.-++=.+|--+.|+|||--|=|++..+--+
T Consensus 148 s~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 148 SNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 445566777777777776554432222334445667789999999999988776543
No 393
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.48 E-value=7.4 Score=43.29 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
....|.+|.-+.|+|||..|-+++..+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh
Confidence 456789999999999999998887653
No 394
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=68.96 E-value=22 Score=47.77 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=71.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
..|-+-|++++..++. ...+-+++--.-|+|||.+..+++..+.......+ .+++.++|+.-. ..++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~-------~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g---~~v~glApT~~A---a~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS-------TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQ---LQVIGLAPTHEA---VGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHh-------CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcC---CeEEEEeChHHH---HHHH
Confidence 4789999999988754 33455677788999999888554333322111111 246778898533 3334
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHH
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~ 304 (755)
.. .+ + .. ..+..|.... ...+... .....+++|||||-.+.+ ....
T Consensus 1085 ~~-~g--~---------~a---~Ti~s~l~~~-------------~~~~~~~---~~~~~~v~ivDEasMv~~---~~~~ 1130 (1960)
T TIGR02760 1085 KS-AG--V---------QA---QTLDSFLTDI-------------SLYRNSG---GDFRNTLFILDESSMVSN---FQLT 1130 (1960)
T ss_pred Hh-cC--C---------ch---HhHHHHhcCc-------------ccccccC---CCCcccEEEEEccccccH---HHHH
Confidence 32 11 1 00 1122222100 0000000 123468999999988744 3333
Q ss_pred HHHcc--ccccEEEeecCCCc
Q psy5647 305 ALMGL--KAKRRVLLSGTPIQ 323 (755)
Q Consensus 305 al~~l--~~~~rllLTGTPiq 323 (755)
.+..+ .+..+++|.|=+-|
T Consensus 1131 ~l~~~~~~~~ak~vlvGD~~Q 1151 (1960)
T TIGR02760 1131 HATELVQKSGSRAVSLGDIAQ 1151 (1960)
T ss_pred HHHHhccCCCCEEEEeCChhh
Confidence 33332 45578999987655
No 395
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=68.89 E-value=30 Score=33.66 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=32.6
Q ss_pred hhhhhcCCccEEEEeCCcccCCCc----cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhh
Q psy5647 276 ASVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHF 335 (755)
Q Consensus 276 ~~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~f 335 (755)
...+....||+||+||.=..-+.. ......+..-+..--|+|||--.+..+.|+..++.-
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADlVTe 152 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADLVTE 152 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SEEEE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCeeee
Confidence 345566789999999986654433 333444444456667999998766555555544443
No 396
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=68.42 E-value=19 Score=36.47 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=26.6
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCC
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~ 325 (755)
..+.+|+||+..+-. .....+..+.....+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~---g~l~~l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP---GYLLLLLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCCh---HHHHHHHhhccCcceEEEECchhcc
Confidence 589999999998743 2222244444445678889998854
No 397
>PRK05580 primosome assembly protein PriA; Validated
Probab=67.63 E-value=48 Score=39.83 Aligned_cols=94 Identities=9% Similarity=0.029 Sum_probs=63.2
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh-cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL-RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~-~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
-|||..+...++..... .+.++||.+........+.+.++. .|..+..++|+++.++|.+...+...+... |+ ++|
T Consensus 172 GSGKT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~-IV-VgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK-VV-IGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC-EE-Eec
Confidence 37888777655554433 367999999998887777666655 488899999999999998887777665433 44 455
Q ss_pred CCcccccccCCCCEEEEeC
Q psy5647 574 KAGGCGLNLIGANRLVMFD 592 (755)
Q Consensus 574 ~agg~GLNL~~a~~vI~~D 592 (755)
... .=+.+.....||+=+
T Consensus 249 rsa-l~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSA-LFLPFKNLGLIIVDE 266 (679)
T ss_pred cHH-hcccccCCCEEEEEC
Confidence 422 123445555555544
No 398
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.32 E-value=8.9 Score=42.72 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.3
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....|++|.-+.|+|||..+-+++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999998887754
No 399
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=66.50 E-value=33 Score=37.04 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=31.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
..+.-..++-+.|+|||.-|+.++....+.+ .++++|.......
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g-------~~v~yId~E~~~~ 96 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAG-------GTAAFIDAEHALD 96 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CcEEEEcccchhH
Confidence 3444567888999999999999988887654 2366676554443
No 400
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.45 E-value=42 Score=38.70 Aligned_cols=95 Identities=7% Similarity=0.035 Sum_probs=62.5
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh-cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL-RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~-~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
..|||..+...++..... .+.++||.+........+.+.|+. .|..+..++|.++.++|.+...+-..+... |+ +.
T Consensus 6 TGsGKT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~-IV-VG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL-VV-IG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC-EE-EC
Confidence 348898887776665543 477899999988877766666654 478899999999999988877666554333 44 44
Q ss_pred cCCcccccccCCCCEEEEeC
Q psy5647 573 SKAGGCGLNLIGANRLVMFD 592 (755)
Q Consensus 573 t~agg~GLNL~~a~~vI~~D 592 (755)
|... .=+-+.....||+=+
T Consensus 83 Trsa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred ChHH-HcCcccCCCEEEEEC
Confidence 4431 112344555555443
No 401
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=65.97 E-value=42 Score=34.33 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCC-----CCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAK-----PLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~-----p~~~~~LIV~ 212 (755)
++|+-.-|+|||.-++.++..+..-.+... +...++|+++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 578889999999999999887654322211 1235678887
No 402
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=65.94 E-value=14 Score=44.82 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=30.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
....|++|.-..|+|||..|-+++..+- .+++.|-++.++..|
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~----------~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESG----------ANFIAVRGPEILSKW 527 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC----------CCEEEEehHHHhhcc
Confidence 3467899999999999999998876541 125666665555444
No 403
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=65.45 E-value=21 Score=38.68 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=17.5
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|+|||=.++.++..+..+|
T Consensus 47 GTGKTP~v~~L~~~L~~~G 65 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARG 65 (326)
T ss_pred CCCchHHHHHHHHHHHhcC
Confidence 9999999999999998875
No 404
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=65.38 E-value=9.1 Score=41.71 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
-..++|..-+.+.+...+ -.+++.+||.+.|+|||-.|+++...|-
T Consensus 30 ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 30 EKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 456777777777665433 3578899999999999999999987764
No 405
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=64.47 E-value=55 Score=33.94 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=13.8
Q ss_pred CCcCeEEEcCCCCcHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCI 188 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaI 188 (755)
.+..+++--+.|.|||..+-
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr 34 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQ 34 (249)
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44556666789999995433
No 406
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=64.33 E-value=16 Score=38.96 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 155 VKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 155 v~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
..||..++ ..+.+++++-.+|+|||-.+-+++..+.
T Consensus 122 ~~~L~~~v-----~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 122 RDVLREAV-----LARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHH-----HcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35666665 3567899999999999988877775543
No 407
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=63.96 E-value=17 Score=39.30 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
.+.+.|. .|+..++ ..+.+.|++-.+|+|||-..-+++..+.
T Consensus 128 ~~~~~~~---~~L~~~v-----~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 128 IMTEAQA---SVIRSAI-----DSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCCHHHH---HHHHHHH-----HcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556665 4555555 3456899999999999988877776554
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.36 E-value=96 Score=34.82 Aligned_cols=55 Identities=20% Similarity=0.112 Sum_probs=34.6
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc-----ccccEEEeecCCCcCCHHHHHHhhhhhcC
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL-----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l-----~~~~rllLTGTPiqN~l~El~sll~fl~p 338 (755)
+++.|+||.+=+..+ +......+..+ .....+.|++|--.+.+.+....+..+..
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 578899998744333 22233333333 23456889999888888887776665554
No 409
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=63.23 E-value=81 Score=34.13 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
++|+|....+-+.... | .-....|+.-..|.|||..|..++..++...+
T Consensus 2 ~yPW~~~~w~~l~~~~-~---r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~ 50 (325)
T PRK08699 2 IYPWHQEQWRQIAEHW-E---RRPNAWLFAGKKGIGKTAFARFAAQALLCETP 50 (325)
T ss_pred CCCccHHHHHHHHHhc-C---CcceEEEeECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4687777777665542 2 33456779999999999999999999886544
No 410
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=63.06 E-value=11 Score=41.58 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-+.|+|||..+-+++..+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999998887543
No 411
>CHL00095 clpC Clp protease ATP binding subunit
Probab=62.97 E-value=16 Score=44.89 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhh----cccccC--CcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 150 HQREGVKFMYECVT----GVRIED--AYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 150 hQ~egv~~l~~~~~----g~~~~~--~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
-|.+++..+...+. |....+ ....++.-++|.|||..|-+++..++.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 48888887766553 221111 123689999999999999999887764
No 412
>PRK07004 replicative DNA helicase; Provisional
Probab=62.85 E-value=74 Score=36.24 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=60.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEe-cCCCHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLR-QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPI-DGGSKAEIDNKLN 250 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~-~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~-~~~~~~~~~~~l~ 250 (755)
.|+|--+|.|||.-++.++..... .+ .+++++..---..+...-+..-..+ +..-.+ .|.-..+....+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~-------~~v~~fSlEM~~~ql~~R~la~~~~-v~~~~i~~g~l~~~e~~~~~ 287 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYG-------LPVAVFSMEMPGTQLAMRMLGSVGR-LDQHRMRTGRLTDEDWPKLT 287 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcC-------CeEEEEeCCCCHHHHHHHHHHhhcC-CCHHHHhcCCCCHHHHHHHH
Confidence 689999999999999999876643 33 3478887765555555444221111 111111 1211111122222
Q ss_pred HHHHHhCCCCCCCEEEE-----ehhhHhhhhhhhhc--CCccEEEEeCCcccCC
Q psy5647 251 SFMQTYGRRPVNPILVI-----SYETFRSHASVLHK--NEVGLVLCDEGHRLKN 297 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l~~--~~~~lvIiDEaH~lKn 297 (755)
....... ..++.|. +...++.....+.. .+.++||||=-|.+.+
T Consensus 288 ~a~~~l~---~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 288 HAVQKMS---EAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHh---cCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 2222221 2346663 33344444333432 2479999998888863
No 413
>PRK05748 replicative DNA helicase; Provisional
Probab=62.67 E-value=1.3e+02 Score=34.21 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=60.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEe-cCCCHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQ-GPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPI-DGGSKAEIDNKL 249 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~-~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~-~~~~~~~~~~~l 249 (755)
=.++|-.+|.|||.-++.++...... + .+++++..---..+....+..-.+. +....+ .+.-.......+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g-------~~v~~fSlEms~~~l~~R~l~~~~~-v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTD-------KNVAIFSLEMGAESLVMRMLCAEGN-IDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCC-------CeEEEEeCCCCHHHHHHHHHHHhcC-CCHHHhhcCCCCHHHHHHH
Confidence 36899999999999999998876533 3 3478887665555555444322121 111111 111111111222
Q ss_pred HHHHHHhCCCCCCCEEEE-----ehhhHhhhhhhhh-cC-CccEEEEeCCcccCC
Q psy5647 250 NSFMQTYGRRPVNPILVI-----SYETFRSHASVLH-KN-EVGLVLCDEGHRLKN 297 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l~-~~-~~~lvIiDEaH~lKn 297 (755)
........ ..++.|. +-+.++.....+. .. +.++||||=-|.+..
T Consensus 277 ~~a~~~l~---~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~ 328 (448)
T PRK05748 277 TIAMGSLS---DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQG 328 (448)
T ss_pred HHHHHHHh---cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCC
Confidence 22222211 1245553 2334444333332 23 689999999988863
No 414
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=61.91 E-value=93 Score=34.91 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=31.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH-HcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL-RQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~-~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
=.++|-.+|.|||.-++.++..+. ..+ .++++++.-.-..+...
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g-------~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREG-------KPVLFFSLEMSAEQLGE 240 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CcEEEEECCCCHHHHHH
Confidence 368999999999999999987765 333 34788875544444433
No 415
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=61.84 E-value=28 Score=37.43 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|+|||=.++.++..+..+|
T Consensus 40 GTGKTP~v~~La~~l~~~G 58 (311)
T TIGR00682 40 GTGKTPVVVWLAELLKDRG 58 (311)
T ss_pred CcChHHHHHHHHHHHHHCC
Confidence 9999999999999888775
No 416
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=61.72 E-value=22 Score=40.93 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.0
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....|++|.-+.|+|||..+-+++..
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999888754
No 417
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=61.44 E-value=39 Score=28.78 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=39.2
Q ss_pred CCEEEEEEec------hhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 514 DDKIVLVSNY------TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 514 ~~KvlIFs~~------~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
+.+|+||+.. -..-..+.++|...|++|..++=......+..+.+.-....-+.||+-
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 5799999874 334567788899999999988865555555555554333445556543
No 418
>PRK05973 replicative DNA helicase; Provisional
Probab=61.35 E-value=14 Score=37.96 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=30.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
..+.-.+++-..|+|||.-++-++......| .+++++.--
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G-------e~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSG-------RTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEEe
Confidence 3455578999999999999999998877655 246777744
No 419
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=61.35 E-value=38 Score=29.44 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=44.2
Q ss_pred CCEEEEEEech------hHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 514 DDKIVLVSNYT------QTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 514 ~~KvlIFs~~~------~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
..+|+||+..+ ..-..+.++|...|++|..+|=......|..+.+..+...-+.||+-..-.|
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 57999998643 3355778889999999998887666677777776665555666665433333
No 420
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=61.31 E-value=36 Score=40.48 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=57.6
Q ss_pred hhhhHHHH-HHHHHHHhccCCCEEEEEEechhHHHH----HHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEE
Q psy5647 495 LSAKLMVL-DTMLAVIKMTTDDKIVLVSNYTQTLDL----FERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569 (755)
Q Consensus 495 ~S~Kl~~L-~~lL~~~~~~~~~KvlIFs~~~~~ld~----l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~ 569 (755)
.|||..+. ..++..+. .+.+++|.+........ +.+++...|+++..++|+++.++|..+.+...++... |+
T Consensus 266 GSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~-Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH-LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC-EE
Confidence 47787643 33444443 46789998887665444 4455555689999999999999999998888765443 44
Q ss_pred EeecCCcccccccCCCCE
Q psy5647 570 MLSSKAGGCGLNLIGANR 587 (755)
Q Consensus 570 LlSt~agg~GLNL~~a~~ 587 (755)
+.+....-..+.+.....
T Consensus 343 VgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLAL 360 (630)
T ss_pred EecHHHHhccccccccce
Confidence 444433333444444333
No 421
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=61.07 E-value=65 Score=34.83 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=31.7
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
.+.=..++-+.|+|||.-|+.++....+.+ .++++|.+.....
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g-------~~~vyId~E~~~~ 96 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLG-------GTVAFIDAEHALD 96 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CCEEEECccccHH
Confidence 344467888999999999999988877654 2367777765443
No 422
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=60.87 E-value=66 Score=35.85 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.4
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~ 200 (755)
.+-.+|.-++|+|||--+=|+-......++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~ 143 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPN 143 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence 4558899999999998777777777776653
No 423
>PF12846 AAA_10: AAA-like domain
Probab=60.69 E-value=18 Score=38.01 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=30.5
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
+.+++.-.+|+|||..+..++..+...+. .++|+=|..-.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~-------~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGP-------RVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCC-------CEEEEcCCchH
Confidence 45678889999999999988888888774 26677666433
No 424
>KOG0349|consensus
Probab=60.60 E-value=7.5 Score=42.51 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHH----HHHHHHHHHHHc---CCCCCCC---------------CC
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTL----QCITLMWTLLRQ---GPLAKPL---------------ID 206 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTl----qaIall~~l~~~---~~~~~p~---------------~~ 206 (755)
+-|.|++-.+ .+++.+++|.|+|+|||- -.|-++|..++. |..++.. ..
T Consensus 27 dvqaeaipli---------lgggdvlmaaetgsgktgaf~lpilqiv~etlrd~~egk~gk~~~~~ga~~~w~mn~~Drg 97 (725)
T KOG0349|consen 27 DVQAEAIPLI---------LGGGDVLMAAETGSGKTGAFCLPILQIVWETLRDLEEGKAGKGGMADGAPREWKMNKQDRG 97 (725)
T ss_pred ccccccccEE---------ecCCcEEEEeccCCCCccceehhhHHHHHHHHHhHhhcccCCCcccCCCccccccCccccC
Confidence 4677777543 467789999999999994 455566766643 2222111 12
Q ss_pred eEEEEeCCcchHhHHHHHHHHhCCC
Q psy5647 207 KAIIVAPSSLVKNWCNEITKWLGGR 231 (755)
Q Consensus 207 ~~LIV~P~sll~nW~~E~~kw~~~~ 231 (755)
-+|-|.|..|.-| -+|+++|.+.+
T Consensus 98 ~alaI~~dGL~Cq-Sre~KeWhGcR 121 (725)
T KOG0349|consen 98 LALAIDEDGLACQ-SREKKEWHGCR 121 (725)
T ss_pred ceeeEcCCccccc-hhHHhhhhccc
Confidence 3677888877655 57899998754
No 425
>KOG1133|consensus
Probab=60.37 E-value=15 Score=42.85 Aligned_cols=47 Identities=26% Similarity=0.282 Sum_probs=38.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
.+.++-|.+-.+-+|+++ ..+.=+|+--++|+|||+..|+...+.++
T Consensus 14 y~PYdIQ~~lM~elyrvL-----e~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVL-----EEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCchhHHHHHHHHHHHHH-----hcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 356688999999999887 45667899999999999998887766554
No 426
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=60.05 E-value=27 Score=35.75 Aligned_cols=41 Identities=22% Similarity=0.394 Sum_probs=31.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+.-.+++-+.|+|||..+.-+++..++.+. ++++|+-..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-------~~lyvs~ee 59 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------PGIYVALEE 59 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-------cEEEEEeeC
Confidence 45666788999999999999999988776553 367777443
No 427
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=59.96 E-value=98 Score=30.68 Aligned_cols=39 Identities=26% Similarity=0.318 Sum_probs=29.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
+.=..+.-+.|+|||.-++.++......+ .+++.|.-..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g-------~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQG-------KKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCC
Confidence 33467888999999999999988877654 2366666654
No 428
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=59.76 E-value=12 Score=42.91 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHHHhhccc---ccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVR---IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~---~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
..+...++++.|.+..-.... .....|.||+-..|+|||+.|-++....- .+++-|-.+.++..|.-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----------~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----------SRFISVKGSELLSKWVG 318 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----------CeEEEeeCHHHhccccc
Confidence 456778888888766544111 24556999999999999999998875321 22455555588888877
Q ss_pred HHHH
Q psy5647 223 EITK 226 (755)
Q Consensus 223 E~~k 226 (755)
|..+
T Consensus 319 esek 322 (494)
T COG0464 319 ESEK 322 (494)
T ss_pred hHHH
Confidence 6655
No 429
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=59.75 E-value=98 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~ 229 (755)
.++.-..|.|||..+..+.+.+...+. ++++|---. ..+.+++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~-------~V~~id~D~--~~~~~~~~~~~~ 49 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGK-------PVLAIDADP--DDLPERLSVEVG 49 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-------cEEEEECCc--hhhHHHHhhccC
Confidence 356667899999999999888876542 244443222 455555555544
No 430
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=59.68 E-value=78 Score=35.10 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=63.7
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~ 250 (755)
.=.+++-|.|.||+-.-+-++..+..++ ++|.|+=---+.||+--..+.--.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--------~vLYVsGEES~~QiklRA~RL~~~-------------------- 145 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--------KVLYVSGEESLQQIKLRADRLGLP-------------------- 145 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--------cEEEEeCCcCHHHHHHHHHHhCCC--------------------
Confidence 3367899999999976666665555443 479999888888887666554211
Q ss_pred HHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCC
Q psy5647 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~ 298 (755)
..++.+.....+......+...+++++|+|=.+.+-++
T Consensus 146 ----------~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 146 ----------TNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ----------ccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 12466666666666667777789999999988877554
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=59.47 E-value=16 Score=38.21 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
+.|.|.+.+.++.. ...+.++++-++|+|||-..-+++..+
T Consensus 64 ~~~~~~~~l~~~~~-------~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLE-------KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHh-------cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 56788888776653 233457899999999999888877655
No 432
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.40 E-value=1.5e+02 Score=33.40 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=31.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
.+++-.+|.|||.-++.+++....... .++++++.---..+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g------~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEG------KPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC------CeEEEEeCcCCHHHHHH
Confidence 588999999999999999887664321 34788876644444333
No 433
>KOG0298|consensus
Probab=59.04 E-value=4.5 Score=49.94 Aligned_cols=124 Identities=27% Similarity=0.412 Sum_probs=110.6
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCC
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP 593 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~ 593 (755)
-+|||+||+....+|.++..+...++.+.+..++ ++-...+..|.. ..+||+-++.|+-|+||..|.||++.+|
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheecc
Confidence 4699999999999999999999999998776654 345567777753 6689999999999999999999999999
Q ss_pred CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHh
Q psy5647 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSS 643 (755)
Q Consensus 594 ~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~ 643 (755)
--||+...||+||+||+||+++++||+|+..+|+||.|+.....|.....
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999998877765443
No 434
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=59.03 E-value=49 Score=36.81 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
.+..+.+.-+.|.|||..+-.+...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh
Confidence 34446666789999997666655443
No 435
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=58.90 E-value=64 Score=33.44 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=63.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~ 250 (755)
=++||-..|.|||.-++-++..+...+. .++++++.---. .-+.+-+....+-....+. .+....+....+.
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~------~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~-~g~l~~~e~~~~~ 93 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGG------YPVLYFSLEMSEEELAARLLARLSGVPYNKIR-SGDLSDEEFERLQ 93 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTS------SEEEEEESSS-HHHHHHHHHHHHHTSTHHHHH-CCGCHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcC------CeEEEEcCCCCHHHHHHHHHHHhhcchhhhhh-ccccCHHHHHHHH
Confidence 3789999999999999999998887642 358999887333 3344444444332111110 1211222222232
Q ss_pred HHHHHhCCCCCCCEEEEeh-----hhHhhhhhhhhc--CCccEEEEeCCcccCCC
Q psy5647 251 SFMQTYGRRPVNPILVISY-----ETFRSHASVLHK--NEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 251 ~~~~~~~~~~~~~VlI~sy-----e~l~~~~~~l~~--~~~~lvIiDEaH~lKn~ 298 (755)
....... ...++|... +.+......+.. .+.++||||=.|.+...
T Consensus 94 ~~~~~l~---~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 94 AAAEKLS---DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHH---TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHh---hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2222221 123554332 233333333322 57899999999988763
No 436
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=58.88 E-value=73 Score=34.18 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
..+.+.||+-+-|+|||...|-+...+
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHH
Confidence 356788999999999998776654433
No 437
>PHA02542 41 41 helicase; Provisional
Probab=58.86 E-value=58 Score=37.19 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=32.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
+|+|-.+|.|||.-++.++......+ ++++++.----..++..-+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g-------~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQG-------YNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcC-------CcEEEEeccCCHHHHHHHH
Confidence 68999999999999999998776443 3478886544444444433
No 438
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=58.79 E-value=18 Score=37.83 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
|+.+.-++.+..++ ..+...+|-.+.|+|||..|-++...
T Consensus 5 ~~~~~l~~~~l~~l-----~~g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYL-----KSGYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHH-----hcCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 45555555555554 35668899999999999999988763
No 439
>PRK09165 replicative DNA helicase; Provisional
Probab=58.62 E-value=1.5e+02 Score=34.06 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=61.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCC-C-------CCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecCC-CH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPL-A-------KPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGG-SK 242 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~-~-------~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~~-~~ 242 (755)
+|+|--+|.|||.-++.+++........ . ...-.+++++..---..++..-+.....+ ....+ ..+. +.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i-~~~~l~~ 298 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKI-RRGKISE 298 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHH-hcCCCCH
Confidence 6899999999999999888776543110 0 00114578887775555555544332221 11111 1111 12
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEE-----ehhhHhhhhhhh-hcCCccEEEEeCCcccCC
Q psy5647 243 AEIDNKLNSFMQTYGRRPVNPILVI-----SYETFRSHASVL-HKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l-~~~~~~lvIiDEaH~lKn 297 (755)
.+. ..+....... ...++.|. +.+.++.....+ ...+.++||||=-|.+..
T Consensus 299 ~e~-~~l~~a~~~l---~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 299 EDF-EKLVDASQEL---QKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred HHH-HHHHHHHHHH---hcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 221 2222222211 12345553 233444333322 235789999999887753
No 440
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=57.97 E-value=20 Score=37.57 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
.-..++|.-..|||||-.|--++.++
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHh
Confidence 34568999999999997776665444
No 441
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=57.77 E-value=92 Score=37.69 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=42.3
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc-----ccccEEEeecCCCcCCHHHHHHhhhhh---cCC-----------CCCC
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL-----KAKRRVLLSGTPIQNDLLEYFSLVHFV---NQG-----------ILGT 343 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l-----~~~~rllLTGTPiqN~l~El~sll~fl---~p~-----------~l~~ 343 (755)
++|+||||=+=+..+. ......+..+ .....+.|++|--...+.++...++.. ++. .+|.
T Consensus 263 ~~D~VLIDTAGRs~~d-~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~ 341 (767)
T PRK14723 263 DKHLVLIDTVGMSQRD-RNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGP 341 (767)
T ss_pred CCCEEEEeCCCCCccC-HHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccH
Confidence 4689999988876543 2344444433 234568888986555566555444432 221 2344
Q ss_pred hHHHHHhccCcccc
Q psy5647 344 AQEFRKQYETPILR 357 (755)
Q Consensus 344 ~~~F~~~f~~pi~~ 357 (755)
.-.+...+..||.-
T Consensus 342 iL~i~~~~~lPI~y 355 (767)
T PRK14723 342 ALDTVIRHRLPVHY 355 (767)
T ss_pred HHHHHHHHCCCeEE
Confidence 45566666777643
No 442
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=57.49 E-value=17 Score=39.25 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
..++|.+++-+.|+|||-.|+++...|=
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678999999999999999999988774
No 443
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=56.36 E-value=1.9e+02 Score=32.09 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=71.8
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l 249 (755)
++-..|--.+|.|||-+..=+++.+...... .+-.||-..+.=+.- ..++ +|++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~----~kVaiITtDtYRIGA-~EQL-k~Ya-------------------- 256 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK----KKVAIITTDTYRIGA-VEQL-KTYA-------------------- 256 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC----cceEEEEeccchhhH-HHHH-HHHH--------------------
Confidence 4556788999999999888788777622211 122344444432211 1111 1221
Q ss_pred HHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcc-cCCCc-cHHHHHHHcc--ccccEEEeecCCCcCC
Q psy5647 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR-LKNCE-SQTYQALMGL--KAKRRVLLSGTPIQND 325 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~-lKn~~-s~~~~al~~l--~~~~rllLTGTPiqN~ 325 (755)
..-+ -.-.++.+..-|......+. .+|+|.||=+=| -++.. ....+++... ....-+.||+|-=.++
T Consensus 257 ----~im~---vp~~vv~~~~el~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 257 ----DIMG---VPLEVVYSPKELAEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred ----HHhC---CceEEecCHHHHHHHHHHhh--cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 1111 01123333333433333333 358999996543 22211 1111222222 3455699999999999
Q ss_pred HHHHHHhhhhhcCC
Q psy5647 326 LLEYFSLVHFVNQG 339 (755)
Q Consensus 326 l~El~sll~fl~p~ 339 (755)
+.|++..+..++..
T Consensus 328 lkei~~~f~~~~i~ 341 (407)
T COG1419 328 LKEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHHhccCCcc
Confidence 99999999888764
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=56.02 E-value=38 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=17.3
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|.|||-+|.|+...+...|
T Consensus 12 GVGKTT~aaA~A~~lA~~g 30 (322)
T COG0003 12 GVGKTTIAAATAVKLAESG 30 (322)
T ss_pred cccHHHHHHHHHHHHHHcC
Confidence 8999999999998888876
No 445
>PRK09354 recA recombinase A; Provisional
Probab=55.94 E-value=1.1e+02 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=30.7
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
+.=..++-+.|+|||.-|+.++......+. +++.|.......
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~-------~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGG-------TAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------cEEEECCccchH
Confidence 334568889999999999999888776542 367776665444
No 446
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=55.39 E-value=12 Score=39.02 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||.+|+.++..+.++| +++|+|
T Consensus 10 GVGKTT~~~nLA~~La~~g-------~rVLli 34 (268)
T TIGR01281 10 GIGKSTTSSNLSVAFAKLG-------KRVLQI 34 (268)
T ss_pred cCcHHHHHHHHHHHHHhCC-------CeEEEE
Confidence 9999999999999998776 346666
No 447
>PRK07413 hypothetical protein; Validated
Probab=55.23 E-value=1e+02 Score=34.05 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=74.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH---HHHHHHHh----CCCceEEEecCC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW---CNEITKWL----GGRVAALPIDGG 240 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW---~~E~~kw~----~~~~~~~~~~~~ 240 (755)
...+..++----|=|||-.|+.++...+-.|.. .....+++||= .+-..| +..+.+.+ ++.+.......+
T Consensus 198 ~~~g~i~VYTG~GKGKTTAAlGlAlRA~G~G~~-~~~~~rV~ivQ--FlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~ 274 (382)
T PRK07413 198 NSSGGIEIYTGEGKGKSTSALGKALQAIGRGIS-QDKSHRVLILQ--WLKGGSGYTEDAAIAALRESYPHLVDHLRSGRD 274 (382)
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHhcCCCC-cccCceEEEEE--ECCCCCChHHHHHHHHhhhhCCCcEEEEEccCC
Confidence 344556777888999999999998777655520 01112455532 222233 22222333 321222211111
Q ss_pred -------CHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc----cHHHHHHHcc
Q psy5647 241 -------SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE----SQTYQALMGL 309 (755)
Q Consensus 241 -------~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~----s~~~~al~~l 309 (755)
..+...... -+.+......+....+|+||+||.-..-+.. ......+..-
T Consensus 275 ~~~~~~~~~~~~~~~a-------------------~~~~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~r 335 (382)
T PRK07413 275 AIVWRGQQQPIDYVEA-------------------ERAWEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRK 335 (382)
T ss_pred CceeecCChHHHHHHH-------------------HHHHHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhC
Confidence 111000000 0122223345667789999999987654433 3444455554
Q ss_pred ccccEEEeecCC-CcCCHHHHHHhhh
Q psy5647 310 KAKRRVLLSGTP-IQNDLLEYFSLVH 334 (755)
Q Consensus 310 ~~~~rllLTGTP-iqN~l~El~sll~ 334 (755)
+..--|+|||-- ....+.|+..++.
T Consensus 336 p~~~evVLTGR~~ap~~lie~ADlVT 361 (382)
T PRK07413 336 PRDTEVIITGRCKNQPAYFDLASVHS 361 (382)
T ss_pred CCCCEEEEeCCCCCCHHHHHhCchhe
Confidence 566679999984 5544544444443
No 448
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=55.15 E-value=21 Score=43.34 Aligned_cols=55 Identities=22% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
.|-|-|+++|.. ..+.+++-...|+|||.+.+.-+..++..+.. . ...+|+++-+
T Consensus 4 ~Ln~~Q~~av~~-----------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-~--P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT-----------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-A--PWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC-----------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-C--HHHeeeeecc
Confidence 588999999964 23456777799999999999999988865321 1 2457777765
No 449
>PHA00673 acetyltransferase domain containing protein
Probab=54.73 E-value=17 Score=34.74 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.0
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc---ccccEEEeecCCCcCCHH
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL---KAKRRVLLSGTPIQNDLL 327 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l---~~~~rllLTGTPiqN~l~ 327 (755)
..+-|.+|+.||-++-.+.....+... ..-.+|.+||||-.|.+.
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 367899999999988888877776554 567899999999998754
No 450
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=54.61 E-value=30 Score=37.38 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
.+-+.|.+ ||..++ ..+.+++++-.+|+|||-.+-+++..+.
T Consensus 132 ~~~~~~~~---~L~~~v-----~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 132 IMTAAQRE---AIIAAV-----RAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCCHHHHH---HHHHHH-----HcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 34456654 445554 3567899999999999977777665543
No 451
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=54.53 E-value=45 Score=33.77 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=31.2
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
..+.-.+++-+.|+|||.-+..++...+..+ .++++|+-.....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g-------~~~~~is~e~~~~ 61 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG-------DPVIYVTTEESRE 61 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcC-------CeEEEEEccCCHH
Confidence 3455578899999999999999887766554 2467776544333
No 452
>PRK14873 primosome assembly protein PriA; Provisional
Probab=54.29 E-value=68 Score=38.36 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-C-CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR-G-YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~-g-~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
-|||..++.++++..... |+.+||...-......+...|+.+ | ..+..+++..+..+|.+...+..++... |+ +.
T Consensus 170 GSGKTevyl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~-IV-iG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR-VV-VG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc-EE-EE
Confidence 479999999999887754 678888888877777666666654 4 6799999999999999888887765443 44 44
Q ss_pred cCC
Q psy5647 573 SKA 575 (755)
Q Consensus 573 t~a 575 (755)
|++
T Consensus 247 tRS 249 (665)
T PRK14873 247 TRS 249 (665)
T ss_pred cce
Confidence 443
No 453
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=54.06 E-value=1.5e+02 Score=31.56 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.|..-|...+..+...+... .-..++|... |.||+..|..++..++..++
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~---rl~hAyLf~G-~~G~~~~A~~~A~~llC~~~ 51 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQD---RLNHAYLFSG-DFASFEMALFLAQSLFCEQK 51 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcC---CcceeeeeeC-CccHHHHHHHHHHHHcCCCC
Confidence 35566777777777666432 2233444443 68999999999988887654
No 454
>PRK04328 hypothetical protein; Provisional
Probab=54.01 E-value=40 Score=34.86 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=29.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
..+.-.+++-+.|+|||..+.-+++..+..+. ++++|.-
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge-------~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-------PGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------cEEEEEe
Confidence 34555778999999999999999988776653 3566663
No 455
>PRK08840 replicative DNA helicase; Provisional
Probab=53.99 E-value=2e+02 Score=32.80 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=32.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.|+|--+|.|||.-++.++....... + .+++++..---..++..-+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~--~----~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQ--D----KPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhC--C----CeEEEEeccCCHHHHHHHH
Confidence 68999999999999988887764321 1 3478887775555655444
No 456
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=53.57 E-value=35 Score=42.04 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhh----ccccc-CCcC-eEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 150 HQREGVKFMYECVT----GVRIE-DAYG-CIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 150 hQ~egv~~l~~~~~----g~~~~-~~~g-~ILADemGlGKTlqaIall~~l~ 195 (755)
-|-++|..+.+.+. |.... ...| .++.-++|.|||..|-++...+.
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47777776666553 32211 2233 68999999999999999987765
No 457
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=53.49 E-value=21 Score=39.54 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=17.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+.+++ +.-+.|.|||..+-.+.......
T Consensus 169 GQR~l-IvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 169 GQRGL-IVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred CceEE-EeCCCCCChhHHHHHHHHHHHhh
Confidence 34444 55678999997766655555443
No 458
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=53.40 E-value=14 Score=38.89 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.5
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||.+++.+.+.+.+.| +++|+|
T Consensus 11 GVGKTT~~~nLA~~La~~G-------~rVLlI 35 (274)
T PRK13235 11 GIGKSTTTQNTVAGLAEMG-------KKVMVV 35 (274)
T ss_pred CccHHHHHHHHHHHHHHCC-------CcEEEE
Confidence 8999999999999998876 357777
No 459
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=53.02 E-value=6.7 Score=43.24 Aligned_cols=31 Identities=45% Similarity=0.681 Sum_probs=27.7
Q ss_pred cccEEEeecCCCcCCHHHHHHhhhhhcCCCC
Q psy5647 311 AKRRVLLSGTPIQNDLLEYFSLVHFVNQGIL 341 (755)
Q Consensus 311 ~~~rllLTGTPiqN~l~El~sll~fl~p~~l 341 (755)
.++.+++||||+.|.+.|+|++..++.++.+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 4667999999999999999999999998854
No 460
>PRK10037 cell division protein; Provisional
Probab=52.89 E-value=14 Score=38.16 Aligned_cols=25 Identities=28% Similarity=0.670 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||..++.+.+.+.+.| +++|+|
T Consensus 12 GvGKTT~a~nLA~~La~~G-------~rVLlI 36 (250)
T PRK10037 12 GVGTTSITAALAWSLQMLG-------ENVLVI 36 (250)
T ss_pred CccHHHHHHHHHHHHHhcC-------CcEEEE
Confidence 9999999999999998876 347777
No 461
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.54 E-value=2.3e+02 Score=28.77 Aligned_cols=46 Identities=15% Similarity=0.361 Sum_probs=36.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
+++--+-|+|||+-+--+++-++.++. ++..|+.-..+....+.+.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~-------~v~yvsTe~T~refi~qm~ 76 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGY-------RVTYVSTELTVREFIKQME 76 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCc-------eEEEEEechhHHHHHHHHH
Confidence 677889999999999999999998873 4677777766666555543
No 462
>PRK10824 glutaredoxin-4; Provisional
Probab=52.49 E-value=91 Score=28.19 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCEEEEEEec------hhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCccc
Q psy5647 514 DDKIVLVSNY------TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGC 578 (755)
Q Consensus 514 ~~KvlIFs~~------~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~ 578 (755)
..+||||+.. =..-....++|...|+.|..++=.....-|.. +.++.. ..-+.||+-..-.||.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCEEEcCh
Confidence 5799999984 33566777888888887766654444444544 444443 5667788777777765
No 463
>KOG1807|consensus
Probab=52.45 E-value=52 Score=39.05 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|...|+.+.+++... .=.|+--..|+|||++.+-++.+++....... ..-|+||||=+ +.+.|.-.-+
T Consensus 378 ildsSq~~A~qs~lty---------elsliqgppGTgkt~vtlkav~tLL~n~s~~~-~~epIlvvC~Tnhavdq~ligi 447 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTY---------ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYT-EPEPILVVCLTNHAVDQYLIGI 447 (1025)
T ss_pred eecHHHHHHHHHHhhh---------hhheeecCCCCCceeehHHHHHHHHhcccccc-cccceeeeehhhHHHHHHHHHH
Confidence 5667899999888653 23577889999999999999999987653322 23578999977 7788876665
Q ss_pred HHHhCCCceEEEecCCC
Q psy5647 225 TKWLGGRVAALPIDGGS 241 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~ 241 (755)
... ++..++...+..
T Consensus 448 y~~--qrpsImr~gsr~ 462 (1025)
T KOG1807|consen 448 YYH--QRPSIMRQGSRF 462 (1025)
T ss_pred Hhc--CCceEEEecccc
Confidence 432 233444444433
No 464
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=52.02 E-value=15 Score=38.63 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||..|+.+++.+.+.| +++|+|
T Consensus 11 GVGKTT~a~nLA~~La~~G-------~rVLli 35 (279)
T PRK13230 11 GIGKSTTVCNIAAALAESG-------KKVLVV 35 (279)
T ss_pred CCcHHHHHHHHHHHHHhCC-------CEEEEE
Confidence 9999999999999998876 346776
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=51.98 E-value=24 Score=42.77 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=21.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
....|.+|.-+.|+|||..+-+++..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Confidence 456789999999999998887776543
No 466
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.59 E-value=16 Score=38.94 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=17.6
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|.|||.+++.+++.+.+.|
T Consensus 10 GVGKTTta~nLA~~La~~G 28 (290)
T CHL00072 10 GIGKSTTSCNISIALARRG 28 (290)
T ss_pred CCcHHHHHHHHHHHHHHCC
Confidence 8999999999999998876
No 467
>PRK06321 replicative DNA helicase; Provisional
Probab=51.15 E-value=1.9e+02 Score=33.13 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=32.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
+|||--+|.|||.-++.++....... + .+++++..---..++...+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~--g----~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQN--R----LPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhc--C----CeEEEEeccCCHHHHHHHH
Confidence 68999999999999999877664321 1 3478887765555655544
No 468
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=51.01 E-value=1.4e+02 Score=34.31 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=32.1
Q ss_pred CccEEEEeCCcccCCCccHHHHHHHcc-----ccccEEEeecCCCcCCHHHHHHhhhhh
Q psy5647 283 EVGLVLCDEGHRLKNCESQTYQALMGL-----KAKRRVLLSGTPIQNDLLEYFSLVHFV 336 (755)
Q Consensus 283 ~~~lvIiDEaH~lKn~~s~~~~al~~l-----~~~~rllLTGTPiqN~l~El~sll~fl 336 (755)
+++.++||.+=+..+.. .....+..+ .....+.|++|.-++.+.+....++.+
T Consensus 334 d~d~VLIDTaGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~ 391 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGP 391 (484)
T ss_pred CCCeEEeCCCCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccC
Confidence 56899999976554322 222322222 234568899998887777766554443
No 469
>KOG0739|consensus
Probab=50.93 E-value=25 Score=37.10 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=34.9
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw 227 (755)
..-+|.+|.-..|+||+.-|-|++-..- .++.-|..+-|+..|.-|-.|.
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEAn----------STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEAN----------STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhcC----------CceEEeehHHHHHHHhccHHHH
Confidence 3457899999999999998888764321 2355566667888776555443
No 470
>KOG1942|consensus
Probab=50.69 E-value=29 Score=36.49 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
..++..+||-..|+|||-.|+++...+
T Consensus 62 maGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 357889999999999999999988776
No 471
>PRK05636 replicative DNA helicase; Provisional
Probab=50.58 E-value=1.3e+02 Score=34.74 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=30.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
.|+|-.+|.|||.-++.++........ .+++++..---..++..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g------~~v~~fSlEMs~~ql~~ 311 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN------KASVIFSLEMSKSEIVM 311 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEEeeCCHHHHHH
Confidence 588999999999999988876543321 34788866554444443
No 472
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=50.35 E-value=17 Score=38.06 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
--|.|||-+++.++..+.+.| +++|+|
T Consensus 10 KGGVGKTT~~~nLA~~la~~G-------~kVLli 36 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLG-------KKVLQI 36 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 459999999999999998776 346777
No 473
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=49.91 E-value=1.1e+02 Score=32.77 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.8
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+..++.-+-|.|||..|.+++..++..
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 455899999999999999999887654
No 474
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=49.77 E-value=23 Score=33.87 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.8
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
|.+-++|.|||..++.++..+.+++.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~ 27 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGY 27 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCC
Confidence 56778999999999999999988763
No 475
>CHL00206 ycf2 Ycf2; Provisional
Probab=49.58 E-value=53 Score=43.44 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
...+|++|.-.+|+|||+-|=|++... +-| .+-|..+.++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es------~VP----FIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS------YVP----FITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc------CCc----eEEEEHHHHhhcc
Confidence 346799999999999999998887542 223 4555555666665
No 476
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=48.70 E-value=18 Score=37.73 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=17.5
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|.|||..++.+++.+.++|
T Consensus 10 GvGKTT~a~nLA~~la~~G 28 (267)
T cd02032 10 GIGKSTTSSNLSVALAKRG 28 (267)
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 9999999999999998776
No 477
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=48.68 E-value=42 Score=41.50 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhcc----ccc--CCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 150 HQREGVKFMYECVTGV----RIE--DAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 150 hQ~egv~~l~~~~~g~----~~~--~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
-|-++|.-+...+... ... .....++.-+.|+|||..|-++...+...
T Consensus 569 GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 569 GQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred CChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3666776666655321 111 12347899999999999999998877543
No 478
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=48.48 E-value=19 Score=36.13 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
--|.|||..+..++..+.+.|. ++|||
T Consensus 8 KGGvGKTt~~~nLA~~la~~G~-------rvLli 34 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAEMGK-------KVLQV 34 (212)
T ss_pred CCcCcHHHHHHHHHHHHHHCCC-------cEEEE
Confidence 4599999999999999988763 46666
No 479
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=48.44 E-value=19 Score=37.82 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||..|+.+++.+.++| +++|||
T Consensus 10 GVGKTT~a~nLA~~La~~G-------~~Vlli 34 (275)
T TIGR01287 10 GIGKSTTTQNIAAALAEMG-------KKVMIV 34 (275)
T ss_pred cCcHHHHHHHHHHHHHHCC-------CeEEEE
Confidence 8999999999999999876 346666
No 480
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=48.36 E-value=45 Score=34.65 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=33.3
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+.-.++.-++|+|||+-++-+++...+.+. +++.|+-..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge-------~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGE-------PVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC-------cEEEEEecC
Confidence 45666889999999999999999999988852 478887553
No 481
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=48.16 E-value=21 Score=35.43 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.|.+.++|.|||..+++++..+.+++.
T Consensus 4 ~I~~t~t~vGKT~vslgL~~~l~~~g~ 30 (199)
T PF13500_consen 4 FITGTDTGVGKTVVSLGLARALRRRGI 30 (199)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCCC
Confidence 477899999999999999999988764
No 482
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=48.14 E-value=63 Score=34.40 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=49.4
Q ss_pred ccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc-----CCCceEEEee
Q psy5647 511 MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-----TSNEFIFMLS 572 (755)
Q Consensus 511 ~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~-----~~~~~v~LlS 572 (755)
+-+.++|||.-.-..+-...+..|+..|+++.|+-|+.-.+.-.++...|++ -++..+++++
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 3467899999999888888999999999999999999877777777777752 2334566665
No 483
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=48.13 E-value=39 Score=43.57 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
+-+-|..+|. ..+.+.++...-|+|||.+.+.-+..++..+. .+..+||||=+....++
T Consensus 2 ~t~~Q~~ai~-----------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~----~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 2 WTDEQWQAIY-----------TRGQNILVSASAGSGKTAVLVERIIKKILRGV----DIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCHHHHHHHh-----------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC----CHhhEEEEeccHHHHHH
Confidence 4577888885 34667899999999999999998877766551 23678999987655444
No 484
>PRK12608 transcription termination factor Rho; Provisional
Probab=47.72 E-value=17 Score=39.95 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=23.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.+..+++.-+.|.|||..+..++..+....
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 445567888999999999888887776654
No 485
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=47.32 E-value=38 Score=41.11 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l 194 (755)
..++.-+.|+|||..|-++...+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 36899999999999998887655
No 486
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=47.19 E-value=19 Score=37.64 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=27.3
Q ss_pred hcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhh
Q psy5647 280 HKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLV 333 (755)
Q Consensus 280 ~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll 333 (755)
...++|.||++|.- + .....++....+.+...+| |-..++..+...-+
T Consensus 194 LR~~pD~iiigEiR---~--~e~~~~~~a~~tGh~~~~t-T~Ha~s~~~~i~Rl 241 (270)
T PF00437_consen 194 LRQDPDVIIIGEIR---D--PEAAEAIQAANTGHLGSLT-TLHANSAEDAIERL 241 (270)
T ss_dssp TTS--SEEEESCE----S--CHHHHHHHHHHTT-EEEEE-EEE-SSHHHHHHHH
T ss_pred hcCCCCcccccccC---C--HhHHHHHHhhccCCceeee-eeecCCHHHHHHHH
Confidence 34678999999974 3 3455556777777777554 44456666655433
No 487
>PRK05595 replicative DNA helicase; Provisional
Probab=47.06 E-value=1.9e+02 Score=32.83 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=32.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHH-HcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLL-RQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~-~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
+|+|-.+|.|||.-++.++.... +++ .+++++..---..++...+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g-------~~vl~fSlEms~~~l~~R~ 249 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG-------KSVAIFSLEMSKEQLAYKL 249 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC-------CcEEEEecCCCHHHHHHHH
Confidence 58899999999999999987653 433 3478887765555555544
No 488
>PHA02518 ParA-like protein; Provisional
Probab=46.87 E-value=31 Score=34.23 Aligned_cols=36 Identities=31% Similarity=0.521 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe--CCcchHhHHH
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA--PSSLVKNWCN 222 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~--P~sll~nW~~ 222 (755)
|.|||..++.+.+.+.++| +++|+|- |-.-+..|..
T Consensus 11 GvGKTT~a~~la~~la~~g-------~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 11 GAGKTTVATNLASWLHADG-------HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCHHHHHHHHHHHHHhCC-------CeEEEEeCCCCCChHHHHH
Confidence 8999999999999988775 3466663 5555666753
No 489
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=46.78 E-value=39 Score=28.16 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.0
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~ 198 (755)
+.-..|.|||..+..++..+.+.+
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC
Confidence 334449999999999999887754
No 490
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=46.62 E-value=28 Score=37.84 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 154 GVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 154 gv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
-..|+..++ ..+.+++++-++|+|||-..-+++..
T Consensus 149 ~~~~L~~~v-----~~~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 149 IKEFLEHAV-----ISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHHHHHH-----HcCCcEEEECCCCCCHHHHHHHHHhh
Confidence 345777666 46788999999999999877666543
No 491
>KOG0651|consensus
Probab=46.48 E-value=17 Score=38.49 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=32.3
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
....||+|.-..|.|||++|=+++.++-. ..|+|+-+.++...
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~----------nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGV----------NFLKVVSSALVDKY 206 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCC----------ceEEeeHhhhhhhh
Confidence 45789999999999999999998876521 14677766666543
No 492
>PRK13766 Hef nuclease; Provisional
Probab=45.87 E-value=2.1e+02 Score=34.92 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=69.0
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc----CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR----GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~----g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
.+||..+...++.......+.++||++............++.. +..+..++|.++..+|.++... ..|++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~iiv 112 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AKVIV 112 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CCEEE
Confidence 3677653332322222245679999999876665554444432 3478889999998887655432 23566
Q ss_pred eecCCcc-----cccccCCCCEEEEeCCCCCCCc-HHHHhHhhhccCCCCcEEEEEEe-eCCCHHHHHHHH
Q psy5647 571 LSSKAGG-----CGLNLIGANRLVMFDPDWNPAN-DDQAMARVWRDGQKKPCFVYRFL-STGSIEEKMMQR 634 (755)
Q Consensus 571 lSt~agg-----~GLNL~~a~~vI~~D~~WNp~~-~~Qa~gR~~R~GQ~k~V~Vyrlv-~~gTiEEkI~~r 634 (755)
.+..... .-+++...+.||+=+.+--... -.-.+.+.++...+.+ ++.-|- +.+.-++++...
T Consensus 113 ~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~-~il~lTaTP~~~~~~i~~~ 182 (773)
T PRK13766 113 ATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP-LVLGLTASPGSDEEKIKEV 182 (773)
T ss_pred ECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC-EEEEEEcCCCCCHHHHHHH
Confidence 6654332 2234455566666555432111 1223455555544433 232222 233445555443
No 493
>PRK10865 protein disaggregation chaperone; Provisional
Probab=45.78 E-value=59 Score=40.18 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~ 196 (755)
..++.-+.|+|||..|-++...+..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3688999999999999988876653
No 494
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=45.76 E-value=92 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=38.3
Q ss_pred EEEEEEech-hHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccC-CCceEEE
Q psy5647 516 KIVLVSNYT-QTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFM 570 (755)
Q Consensus 516 KvlIFs~~~-~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~-~~~~v~L 570 (755)
|+.||+... ..-.....+|+..|++|..++-......++++.+..+.. .-+.||+
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 466776543 345667788888999999998887777777777776654 4454443
No 495
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=45.22 E-value=84 Score=29.75 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=40.8
Q ss_pred EEEEEEec-------hhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc----CCCceEEE
Q psy5647 516 KIVLVSNY-------TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK----TSNEFIFM 570 (755)
Q Consensus 516 KvlIFs~~-------~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~----~~~~~v~L 570 (755)
||+||+.+ -..-..+..+|+..+++|..+|=++....++++.+.... ..-+.||+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 57888877 234567888999999999999999988888887776543 33444553
No 496
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=44.58 E-value=23 Score=36.80 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
|.|||-.++.++..+.+.| +++|+|
T Consensus 11 GvGKTT~~~nLA~~La~~G-------~kVlli 35 (270)
T cd02040 11 GIGKSTTTQNLSAALAEMG-------KKVMIV 35 (270)
T ss_pred cCCHHHHHHHHHHHHHhCC-------CeEEEE
Confidence 9999999999999998766 346666
No 497
>PRK13531 regulatory ATPase RavA; Provisional
Probab=44.50 E-value=33 Score=39.08 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
|.+.|.-+..+. ..+..++|-.++|+|||..|-++....-
T Consensus 25 re~vI~lll~aa-----lag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 25 RSHAIRLCLLAA-----LSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred cHHHHHHHHHHH-----ccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 344555554444 4577899999999999999998876553
No 498
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=44.38 E-value=22 Score=37.21 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEE
Q psy5647 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211 (755)
Q Consensus 179 mGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV 211 (755)
=|.|||.+++.+...+.+.| +++|+|
T Consensus 10 GGVGKTT~a~nLA~~La~~G-------~rVllv 35 (273)
T PRK13232 10 GGIGKSTTTQNLTAALSTMG-------NKILLV 35 (273)
T ss_pred CCCcHHHHHHHHHHHHHhhC-------CCeEEE
Confidence 38999999999999998876 346666
No 499
>KOG1133|consensus
Probab=44.19 E-value=2.3e+02 Score=33.66 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCH-----HHHHHHHHHHcc--CCCceEEEeec--CCcccccccC-
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTI-----KKRAKVVETFNK--TSNEFIFMLSS--KAGGCGLNLI- 583 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~-----~~R~~~v~~Fn~--~~~~~v~LlSt--~agg~GLNL~- 583 (755)
.+-||+|..+-+-|..+.+.++..|+- .+|.|..+. .--..+++.|.. +.+.-.+|++. .-.++|||+.
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 467889988888888888888876642 122222110 013456677754 22222355553 3456899995
Q ss_pred -CCCEEEEeCCCCC
Q psy5647 584 -GANRLVMFDPDWN 596 (755)
Q Consensus 584 -~a~~vI~~D~~WN 596 (755)
-+..||++..|+-
T Consensus 708 ~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYP 721 (821)
T ss_pred ccccEEEEeecCCC
Confidence 4788888888874
No 500
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=44.13 E-value=24 Score=36.15 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=17.2
Q ss_pred CCcHHHHHHHHHHHHHHcC
Q psy5647 180 GLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~ 198 (755)
|.|||..++.+++.+...|
T Consensus 11 GvGKTt~a~~LA~~la~~g 29 (251)
T TIGR01969 11 GTGKTTITANLGVALAKLG 29 (251)
T ss_pred CCcHHHHHHHHHHHHHHCC
Confidence 8999999999999988765
Done!