Query psy5647
Match_columns 755
No_of_seqs 477 out of 2782
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:04:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 8E-114 3E-118 1011.3 51.1 643 92-741 1-644 (644)
2 3mwy_W Chromo domain-containin 100.0 5.7E-79 2E-83 732.8 40.6 492 144-673 234-738 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 1.3E-74 4.6E-79 661.8 40.3 465 140-670 31-498 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.1E-51 7.3E-56 500.6 33.7 444 143-652 150-642 (968)
5 1z5z_A Helicase of the SNF2/RA 100.0 3.3E-46 1.1E-50 390.7 23.3 258 385-671 12-270 (271)
6 1wp9_A ATP-dependent RNA helic 100.0 9.5E-45 3.3E-49 410.2 33.0 443 145-643 8-493 (494)
7 2fwr_A DNA repair protein RAD2 100.0 9.2E-41 3.2E-45 378.8 21.5 377 144-642 91-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 1.5E-36 5.2E-41 350.6 34.8 470 145-662 6-540 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 2.4E-36 8.2E-41 363.5 33.6 459 144-648 246-771 (797)
10 3tbk_A RIG-I helicase domain; 100.0 5.8E-36 2E-40 345.3 35.1 481 146-664 4-541 (555)
11 4a2w_A RIG-I, retinoic acid in 100.0 5.3E-36 1.8E-40 364.6 31.2 461 144-647 246-770 (936)
12 2ykg_A Probable ATP-dependent 100.0 8.2E-34 2.8E-38 337.2 30.4 446 145-631 12-522 (696)
13 2oca_A DAR protein, ATP-depend 100.0 2.4E-34 8.1E-39 329.4 24.3 350 145-633 112-466 (510)
14 3hgt_A HDA1 complex subunit 3; 100.0 4.6E-34 1.6E-38 298.6 21.3 217 398-636 20-248 (328)
15 4gl2_A Interferon-induced heli 100.0 6.9E-34 2.4E-38 338.0 24.0 455 144-646 5-540 (699)
16 3h1t_A Type I site-specific re 100.0 3.3E-32 1.1E-36 317.1 24.9 358 144-622 176-558 (590)
17 1xti_A Probable ATP-dependent 100.0 9.2E-30 3.1E-34 280.5 34.8 329 146-636 30-367 (391)
18 1hv8_A Putative ATP-dependent 100.0 5.5E-30 1.9E-34 279.3 28.5 313 146-627 28-347 (367)
19 1s2m_A Putative ATP-dependent 100.0 1.8E-29 6.2E-34 279.3 29.1 316 146-625 43-365 (400)
20 2j0s_A ATP-dependent RNA helic 100.0 1.7E-29 5.9E-34 280.5 27.1 319 146-626 59-384 (410)
21 2z0m_A 337AA long hypothetical 100.0 1.7E-29 5.7E-34 272.3 21.8 313 145-635 15-334 (337)
22 3eiq_A Eukaryotic initiation f 100.0 2.7E-29 9.2E-34 278.9 19.6 320 145-625 61-387 (414)
23 3pey_A ATP-dependent RNA helic 100.0 1.5E-28 5E-33 270.8 24.4 312 145-618 26-351 (395)
24 1fuu_A Yeast initiation factor 100.0 2.2E-29 7.4E-34 277.7 16.8 318 145-625 42-366 (394)
25 2db3_A ATP-dependent RNA helic 100.0 9.3E-28 3.2E-32 268.9 29.0 319 145-624 77-406 (434)
26 2i4i_A ATP-dependent RNA helic 100.0 3.2E-27 1.1E-31 262.6 27.3 322 145-625 36-383 (417)
27 3fht_A ATP-dependent RNA helic 100.0 1.6E-26 5.6E-31 256.2 30.7 330 145-638 46-391 (412)
28 3sqw_A ATP-dependent RNA helic 99.9 1E-25 3.5E-30 261.7 31.9 333 145-625 42-398 (579)
29 1oyw_A RECQ helicase, ATP-depe 99.9 4.1E-26 1.4E-30 261.0 28.0 304 145-618 24-338 (523)
30 3oiy_A Reverse gyrase helicase 99.9 1.4E-25 4.7E-30 249.7 30.6 320 144-640 19-376 (414)
31 3i5x_A ATP-dependent RNA helic 99.9 1.9E-25 6.6E-30 258.5 28.6 341 145-636 93-458 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 1.4E-25 4.8E-30 259.4 25.7 311 145-619 43-370 (591)
33 2eyq_A TRCF, transcription-rep 99.9 1.7E-25 5.7E-30 276.3 27.3 312 143-624 600-921 (1151)
34 3fho_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 260.5 11.0 312 146-619 141-466 (508)
35 2xgj_A ATP-dependent RNA helic 99.9 5.1E-24 1.7E-28 259.4 28.3 352 144-626 84-500 (1010)
36 3fmp_B ATP-dependent RNA helic 99.9 4.9E-25 1.7E-29 250.0 13.6 313 145-618 113-441 (479)
37 1gm5_A RECG; helicase, replica 99.9 1.3E-24 4.6E-29 256.7 16.4 311 143-618 365-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 9.3E-23 3.2E-27 250.4 28.5 357 144-630 182-602 (1108)
39 2p6r_A Afuhel308 helicase; pro 99.9 4.8E-22 1.6E-26 235.9 25.3 322 146-629 25-392 (702)
40 2va8_A SSO2462, SKI2-type heli 99.9 1E-21 3.6E-26 233.6 27.8 327 146-626 30-409 (715)
41 4a4z_A Antiviral helicase SKI2 99.9 7.5E-22 2.6E-26 240.3 26.0 394 144-635 37-502 (997)
42 2zj8_A DNA helicase, putative 99.9 4.4E-22 1.5E-26 236.9 23.5 321 146-629 23-391 (720)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.9E-21 6.7E-26 235.5 26.5 161 145-324 270-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.8 1.1E-19 3.9E-24 223.0 28.5 278 144-595 76-388 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 9.2E-19 3.1E-23 215.0 22.9 316 146-641 57-468 (1054)
46 1rif_A DAR protein, DNA helica 99.8 3.2E-19 1.1E-23 187.8 13.7 164 145-338 112-278 (282)
47 2v6i_A RNA helicase; membrane, 99.8 4.2E-18 1.4E-22 190.1 14.4 96 514-616 171-283 (431)
48 2hjv_A ATP-dependent RNA helic 99.7 2.1E-17 7.1E-22 159.2 12.9 133 495-636 19-151 (163)
49 2jlq_A Serine protease subunit 99.7 9.1E-18 3.1E-22 188.5 11.8 93 514-613 188-300 (451)
50 1t5i_A C_terminal domain of A 99.7 2.3E-17 8E-22 160.3 12.9 123 495-624 15-137 (172)
51 2fz4_A DNA repair protein RAD2 99.7 4.3E-17 1.5E-21 166.9 15.1 141 144-326 91-233 (237)
52 1yks_A Genome polyprotein [con 99.7 2.4E-17 8.3E-22 184.3 13.7 93 514-613 177-288 (440)
53 2jgn_A DBX, DDX3, ATP-dependen 99.7 2.2E-17 7.7E-22 162.4 11.0 125 495-625 29-153 (185)
54 1fuk_A Eukaryotic initiation f 99.7 9.7E-17 3.3E-21 154.8 12.7 124 497-627 16-139 (165)
55 2z83_A Helicase/nucleoside tri 99.7 4.6E-17 1.6E-21 183.1 11.9 104 514-625 190-313 (459)
56 2wv9_A Flavivirin protease NS2 99.7 8.7E-17 3E-21 187.8 13.9 95 513-614 409-523 (673)
57 2p6n_A ATP-dependent RNA helic 99.7 9.9E-17 3.4E-21 158.6 11.1 123 495-625 39-161 (191)
58 4f92_B U5 small nuclear ribonu 99.7 5.5E-15 1.9E-19 188.0 29.4 163 145-333 925-1103(1724)
59 1tf5_A Preprotein translocase 99.7 1.5E-15 5.1E-20 176.7 22.0 116 495-615 414-537 (844)
60 2whx_A Serine protease/ntpase/ 99.7 6.2E-16 2.1E-20 179.4 15.7 102 514-623 355-476 (618)
61 3rc3_A ATP-dependent RNA helic 99.6 4.4E-15 1.5E-19 173.0 21.4 106 518-624 324-444 (677)
62 2fsf_A Preprotein translocase 99.6 1.1E-14 3.6E-19 169.1 23.8 117 494-615 422-575 (853)
63 2xau_A PRE-mRNA-splicing facto 99.6 1.9E-16 6.4E-21 188.3 9.4 113 512-627 301-445 (773)
64 3b6e_A Interferon-induced heli 99.6 1.9E-16 6.6E-21 158.9 8.1 160 143-320 30-216 (216)
65 2rb4_A ATP-dependent RNA helic 99.6 1.6E-15 5.5E-20 147.7 14.4 124 496-626 19-148 (175)
66 4f92_B U5 small nuclear ribonu 99.6 1.5E-14 5E-19 184.1 27.0 166 145-331 78-262 (1724)
67 1nkt_A Preprotein translocase 99.6 1.8E-14 6.1E-19 167.4 25.3 116 495-615 442-609 (922)
68 2gxq_A Heat resistant RNA depe 99.6 4.8E-15 1.6E-19 147.9 17.2 164 145-329 22-192 (207)
69 2yjt_D ATP-dependent RNA helic 99.4 2.4E-17 8.1E-22 160.0 0.0 118 496-618 15-132 (170)
70 1t6n_A Probable ATP-dependent 99.6 4.1E-15 1.4E-19 150.2 16.5 162 146-328 36-206 (220)
71 3eaq_A Heat resistant RNA depe 99.6 1.4E-15 4.6E-20 153.0 12.8 124 495-625 15-138 (212)
72 2pl3_A Probable ATP-dependent 99.6 5.4E-15 1.8E-19 151.0 15.9 160 145-322 46-213 (236)
73 3o8b_A HCV NS3 protease/helica 99.6 1.9E-15 6.6E-20 174.2 13.0 101 513-627 395-516 (666)
74 1vec_A ATP-dependent RNA helic 99.6 1.9E-14 6.5E-19 143.5 15.5 157 145-322 24-188 (206)
75 3ber_A Probable ATP-dependent 99.6 2.3E-14 8E-19 147.7 16.2 157 145-322 64-228 (249)
76 2oxc_A Probable ATP-dependent 99.6 2.2E-14 7.4E-19 146.0 15.1 154 146-321 46-208 (230)
77 1q0u_A Bstdead; DEAD protein, 99.6 2.1E-14 7.3E-19 144.8 13.9 162 146-329 26-198 (219)
78 1wrb_A DJVLGB; RNA helicase, D 99.6 4.1E-14 1.4E-18 146.1 16.0 161 145-322 44-220 (253)
79 3jux_A Protein translocase sub 99.6 6.9E-13 2.4E-17 151.0 26.8 119 493-616 454-580 (822)
80 1qde_A EIF4A, translation init 99.5 4.2E-14 1.4E-18 143.0 14.7 156 145-322 35-197 (224)
81 1c4o_A DNA nucleotide excision 99.5 2E-11 6.7E-16 143.0 39.0 109 513-626 438-551 (664)
82 3i32_A Heat resistant RNA depe 99.5 3.2E-14 1.1E-18 150.2 12.6 124 496-626 13-136 (300)
83 3bor_A Human initiation factor 99.5 6.9E-14 2.4E-18 143.0 14.0 157 146-322 52-215 (237)
84 3iuy_A Probable ATP-dependent 99.5 1.5E-13 5E-18 139.5 14.8 160 145-321 41-208 (228)
85 3ly5_A ATP-dependent RNA helic 99.5 3.3E-13 1.1E-17 140.1 14.1 159 146-322 76-243 (262)
86 3dkp_A Probable ATP-dependent 99.4 3.3E-13 1.1E-17 138.5 12.7 158 145-321 50-220 (245)
87 3fe2_A Probable ATP-dependent 99.4 1.2E-12 4E-17 134.2 15.1 158 146-321 51-217 (242)
88 2d7d_A Uvrabc system protein B 99.4 4E-11 1.4E-15 140.3 28.6 110 513-627 444-558 (661)
89 2vl7_A XPD; helicase, unknown 99.2 9.2E-10 3.1E-14 126.0 25.3 81 512-598 382-466 (540)
90 3fmo_B ATP-dependent RNA helic 99.2 6.8E-11 2.3E-15 125.1 12.3 156 145-322 113-278 (300)
91 2ipc_A Preprotein translocase 99.1 1.8E-08 6E-13 117.2 24.8 147 144-333 77-239 (997)
92 3llm_A ATP-dependent RNA helic 98.8 1.8E-08 6.2E-13 102.4 9.5 156 146-324 61-221 (235)
93 3crv_A XPD/RAD3 related DNA he 98.6 1.4E-07 4.9E-12 108.2 13.2 137 146-297 3-187 (551)
94 4a15_A XPD helicase, ATP-depen 98.2 3E-06 1E-10 98.2 10.6 82 146-238 3-86 (620)
95 4b3f_X DNA-binding protein smu 97.6 0.00027 9.4E-09 82.4 13.2 68 144-226 187-255 (646)
96 2gk6_A Regulator of nonsense t 97.2 0.0039 1.3E-07 72.2 16.6 155 145-323 179-375 (624)
97 3e1s_A Exodeoxyribonuclease V, 97.1 0.0025 8.7E-08 72.9 12.9 132 144-324 187-318 (574)
98 3upu_A ATP-dependent DNA helic 97.1 0.0044 1.5E-07 69.0 14.0 146 141-323 20-166 (459)
99 2wjy_A Regulator of nonsense t 97.0 0.0066 2.3E-07 72.1 15.8 155 145-323 355-551 (800)
100 2xzl_A ATP-dependent helicase 96.9 0.0076 2.6E-07 71.6 15.3 154 145-323 359-553 (802)
101 1w36_D RECD, exodeoxyribonucle 96.5 0.012 3.9E-07 68.0 12.3 147 148-324 151-301 (608)
102 2j9r_A Thymidine kinase; TK1, 96.4 0.017 5.7E-07 56.9 10.4 34 175-215 33-66 (214)
103 2orw_A Thymidine kinase; TMTK, 96.3 0.0035 1.2E-07 60.6 5.3 35 173-214 6-40 (184)
104 2o0j_A Terminase, DNA packagin 96.3 0.049 1.7E-06 58.8 14.7 157 145-336 162-326 (385)
105 2b8t_A Thymidine kinase; deoxy 96.2 0.013 4.5E-07 58.3 8.9 36 173-215 15-50 (223)
106 3lfu_A DNA helicase II; SF1 he 95.6 0.081 2.8E-06 61.2 13.6 73 143-229 6-79 (647)
107 1xx6_A Thymidine kinase; NESG, 95.6 0.032 1.1E-06 54.1 8.5 35 173-214 11-45 (191)
108 2orv_A Thymidine kinase; TP4A 95.4 0.055 1.9E-06 53.8 9.5 36 173-215 22-57 (234)
109 3cpe_A Terminase, DNA packagin 95.4 0.17 5.7E-06 58.0 15.2 155 145-334 162-324 (592)
110 3vkw_A Replicase large subunit 95.3 0.038 1.3E-06 60.5 8.5 109 171-323 162-271 (446)
111 3ec2_A DNA replication protein 94.4 0.35 1.2E-05 45.7 12.2 47 149-195 17-63 (180)
112 3syl_A Protein CBBX; photosynt 94.4 0.12 4.1E-06 53.6 9.5 46 169-217 66-111 (309)
113 3te6_A Regulatory protein SIR3 94.0 1.2 4.2E-05 46.5 16.2 48 148-198 25-73 (318)
114 3e2i_A Thymidine kinase; Zn-bi 93.9 0.19 6.4E-06 49.4 8.9 35 174-215 32-66 (219)
115 1a5t_A Delta prime, HOLB; zinc 93.7 0.26 8.8E-06 52.0 10.5 50 147-198 3-52 (334)
116 2p65_A Hypothetical protein PF 93.7 0.2 7E-06 47.0 8.9 28 169-196 42-69 (187)
117 1w4r_A Thymidine kinase; type 93.6 0.23 7.8E-06 48.0 8.8 35 173-214 23-57 (195)
118 1jbk_A CLPB protein; beta barr 93.0 0.28 9.7E-06 46.1 8.7 28 169-196 42-69 (195)
119 1uaa_A REP helicase, protein ( 92.9 0.67 2.3E-05 53.8 13.3 70 146-229 2-72 (673)
120 1l8q_A Chromosomal replication 92.8 0.76 2.6E-05 47.9 12.5 28 170-197 37-64 (324)
121 3bos_A Putative DNA replicatio 92.2 0.88 3E-05 44.6 11.5 42 153-197 38-79 (242)
122 4a15_A XPD helicase, ATP-depen 90.9 0.53 1.8E-05 54.1 9.2 78 514-597 448-529 (620)
123 2w58_A DNAI, primosome compone 90.9 0.39 1.3E-05 46.2 7.0 28 171-198 55-82 (202)
124 2chg_A Replication factor C sm 90.6 1.6 5.6E-05 41.8 11.3 27 171-197 39-65 (226)
125 2qby_B CDC6 homolog 3, cell di 89.9 0.92 3.2E-05 48.3 9.6 47 148-197 25-72 (384)
126 3uk6_A RUVB-like 2; hexameric 89.8 0.96 3.3E-05 47.9 9.5 47 148-195 49-95 (368)
127 2v1u_A Cell division control p 89.1 1.2 4.1E-05 47.2 9.7 29 168-196 42-70 (387)
128 2r2a_A Uncharacterized protein 89.1 0.5 1.7E-05 45.9 6.0 22 173-194 8-29 (199)
129 3eie_A Vacuolar protein sortin 88.7 0.87 3E-05 47.6 8.0 26 169-194 50-75 (322)
130 1fnn_A CDC6P, cell division co 88.1 8.7 0.0003 40.5 15.7 24 172-195 46-69 (389)
131 2qp9_X Vacuolar protein sortin 87.8 0.83 2.8E-05 48.6 7.2 26 169-194 83-108 (355)
132 3u61_B DNA polymerase accessor 87.6 1.4 4.7E-05 45.9 8.6 41 283-323 105-147 (324)
133 2z4s_A Chromosomal replication 87.4 1.8 6.1E-05 47.4 9.8 29 170-198 130-158 (440)
134 1g5t_A COB(I)alamin adenosyltr 87.3 4 0.00014 39.3 11.0 140 169-336 27-174 (196)
135 1njg_A DNA polymerase III subu 87.2 2 6.8E-05 41.7 9.2 26 171-196 46-71 (250)
136 2qz4_A Paraplegin; AAA+, SPG7, 86.7 6 0.0002 39.2 12.6 26 169-194 38-63 (262)
137 1xwi_A SKD1 protein; VPS4B, AA 86.5 2.8 9.6E-05 43.7 10.3 42 169-219 44-85 (322)
138 1iqp_A RFCS; clamp loader, ext 86.1 2.1 7.2E-05 44.1 9.1 24 172-195 48-71 (327)
139 2gno_A DNA polymerase III, gam 85.0 4.3 0.00015 42.0 10.7 40 151-193 2-41 (305)
140 3dm5_A SRP54, signal recogniti 85.0 5.9 0.0002 43.2 12.1 27 172-198 102-128 (443)
141 3h4m_A Proteasome-activating n 83.7 0.96 3.3E-05 46.0 5.0 26 168-193 49-74 (285)
142 1sxj_D Activator 1 41 kDa subu 83.6 1.4 4.7E-05 46.2 6.4 25 171-195 59-83 (353)
143 2bjv_A PSP operon transcriptio 83.2 4.1 0.00014 40.8 9.5 25 169-193 28-52 (265)
144 1sxj_B Activator 1 37 kDa subu 83.1 1.8 6.2E-05 44.6 7.0 25 172-196 44-68 (323)
145 3kl4_A SRP54, signal recogniti 82.6 10 0.00035 41.2 12.8 26 173-198 100-125 (433)
146 4b4t_J 26S protease regulatory 82.4 1.5 5.2E-05 47.2 6.0 46 168-223 180-225 (405)
147 3vfd_A Spastin; ATPase, microt 82.3 1.9 6.6E-05 46.2 6.9 42 169-220 147-188 (389)
148 1r6b_X CLPA protein; AAA+, N-t 82.2 4.8 0.00016 47.3 10.8 28 169-196 206-233 (758)
149 2qby_A CDC6 homolog 1, cell di 82.1 4.1 0.00014 42.9 9.4 29 169-197 44-72 (386)
150 1jr3_A DNA polymerase III subu 81.5 2.8 9.5E-05 44.2 7.8 25 171-195 39-63 (373)
151 1w5s_A Origin recognition comp 81.3 6.6 0.00023 41.8 10.8 48 148-196 27-78 (412)
152 3t15_A Ribulose bisphosphate c 80.9 1.8 6E-05 44.6 5.7 26 169-194 35-60 (293)
153 4dzz_A Plasmid partitioning pr 80.5 8.2 0.00028 36.6 10.1 28 178-212 10-37 (206)
154 1d2n_A N-ethylmaleimide-sensit 79.9 5.9 0.0002 39.8 9.3 26 168-193 62-87 (272)
155 1xp8_A RECA protein, recombina 79.3 11 0.00037 40.0 11.4 46 168-220 72-117 (366)
156 2r6a_A DNAB helicase, replicat 79.1 24 0.00081 38.5 14.5 118 169-297 202-327 (454)
157 4b4t_L 26S protease subunit RP 78.6 1.9 6.6E-05 47.0 5.3 45 168-222 213-257 (437)
158 2zan_A Vacuolar protein sortin 77.8 2.7 9.1E-05 46.1 6.3 43 169-220 166-208 (444)
159 1qvr_A CLPB protein; coiled co 77.7 6.6 0.00022 46.9 10.1 28 169-196 190-217 (854)
160 3pvs_A Replication-associated 77.2 4 0.00014 44.7 7.5 24 171-194 51-74 (447)
161 1pjr_A PCRA; DNA repair, DNA r 76.9 5.4 0.00019 46.6 8.9 58 144-215 9-66 (724)
162 2chq_A Replication factor C sm 76.9 4.1 0.00014 41.7 7.2 24 172-195 40-63 (319)
163 1u94_A RECA protein, recombina 76.8 17 0.00057 38.4 11.9 42 168-216 61-102 (356)
164 2q6t_A DNAB replication FORK h 76.5 30 0.001 37.5 14.3 119 169-298 199-325 (444)
165 2kjq_A DNAA-related protein; s 75.8 6.6 0.00023 35.7 7.5 27 170-196 36-62 (149)
166 3d8b_A Fidgetin-like protein 1 75.5 2.1 7.3E-05 45.3 4.5 25 169-193 116-140 (357)
167 1sxj_C Activator 1 40 kDa subu 73.5 9 0.00031 39.9 8.8 24 172-195 48-71 (340)
168 4fcw_A Chaperone protein CLPB; 73.0 3.2 0.00011 42.6 5.0 26 171-196 48-73 (311)
169 1sxj_A Activator 1 95 kDa subu 72.8 5.5 0.00019 44.5 7.2 25 170-194 77-101 (516)
170 2zr9_A Protein RECA, recombina 72.4 20 0.00069 37.6 11.2 46 168-220 59-104 (349)
171 3hjh_A Transcription-repair-co 71.1 20 0.00069 39.5 11.2 91 172-274 16-115 (483)
172 3b9p_A CG5977-PA, isoform A; A 70.6 10 0.00035 38.4 8.3 26 169-194 53-78 (297)
173 2dr3_A UPF0273 protein PH0284; 70.4 51 0.0017 31.8 13.2 49 169-224 22-70 (247)
174 3co5_A Putative two-component 69.6 10 0.00035 33.9 7.1 77 168-255 25-101 (143)
175 1ojl_A Transcriptional regulat 69.6 12 0.0004 38.5 8.4 26 168-193 23-48 (304)
176 3crv_A XPD/RAD3 related DNA he 68.7 19 0.00067 40.3 10.7 85 513-607 392-484 (551)
177 2px0_A Flagellar biosynthesis 68.5 22 0.00076 36.3 10.2 24 173-196 108-131 (296)
178 3n70_A Transport activator; si 67.4 41 0.0014 29.9 10.7 25 168-192 22-46 (145)
179 3bh0_A DNAB-like replicative h 65.8 83 0.0028 32.1 14.1 51 168-225 66-116 (315)
180 3cmu_A Protein RECA, recombina 64.9 26 0.00088 45.4 11.5 46 167-219 1424-1469(2050)
181 3bgw_A DNAB-like replicative h 64.2 86 0.0029 33.9 14.4 49 169-224 196-244 (444)
182 1u6t_A SH3 domain-binding glut 63.9 9.8 0.00034 33.4 5.4 61 517-577 2-77 (121)
183 1vma_A Cell division protein F 63.7 24 0.00081 36.3 9.3 26 173-198 107-132 (306)
184 3hu3_A Transitional endoplasmi 63.4 11 0.00039 41.6 7.2 26 168-193 236-261 (489)
185 2qgz_A Helicase loader, putati 63.0 12 0.00041 38.6 6.9 29 170-198 152-181 (308)
186 4a1f_A DNAB helicase, replicat 62.2 16 0.00056 38.2 7.8 48 169-223 45-92 (338)
187 3io5_A Recombination and repai 62.0 22 0.00076 36.9 8.5 42 172-218 30-71 (333)
188 2ce7_A Cell division protein F 61.8 16 0.00054 40.2 7.9 26 169-194 48-73 (476)
189 3hr8_A Protein RECA; alpha and 61.2 55 0.0019 34.4 11.7 43 170-219 61-103 (356)
190 4b4t_M 26S protease regulatory 60.4 4.4 0.00015 44.2 3.0 46 168-223 213-258 (434)
191 2zpa_A Uncharacterized protein 59.8 27 0.00094 40.0 9.6 54 145-215 174-227 (671)
192 1gm5_A RECG; helicase, replica 59.1 31 0.0011 40.4 10.2 93 495-590 399-496 (780)
193 2xxa_A Signal recognition part 58.9 22 0.00074 38.6 8.3 35 172-213 102-137 (433)
194 1zu4_A FTSY; GTPase, signal re 58.9 53 0.0018 33.9 11.0 33 173-212 108-140 (320)
195 1sxj_E Activator 1 40 kDa subu 58.0 27 0.00092 36.2 8.7 24 172-195 38-61 (354)
196 4b4t_I 26S protease regulatory 57.3 6.1 0.00021 42.8 3.5 46 168-223 214-259 (437)
197 2cvh_A DNA repair and recombin 57.0 97 0.0033 29.0 12.1 25 168-192 18-42 (220)
198 3pxi_A Negative regulator of g 57.0 13 0.00045 43.5 6.6 113 151-320 496-628 (758)
199 4b4t_H 26S protease regulatory 55.7 5.3 0.00018 43.7 2.7 46 168-223 241-286 (467)
200 4b4t_K 26S protease regulatory 55.1 6.2 0.00021 42.8 3.1 43 168-220 204-246 (428)
201 2l82_A Designed protein OR32; 54.3 42 0.0014 28.3 7.3 47 516-562 4-50 (162)
202 1ls1_A Signal recognition part 54.3 58 0.002 33.1 10.3 32 174-212 102-133 (295)
203 3u4q_A ATP-dependent helicase/ 53.8 17 0.00059 45.1 7.2 61 145-217 9-69 (1232)
204 2c9o_A RUVB-like 1; hexameric 53.2 14 0.00049 40.3 5.8 63 149-220 43-105 (456)
205 1byi_A Dethiobiotin synthase; 52.7 15 0.0005 35.4 5.2 33 174-213 6-38 (224)
206 3oiy_A Reverse gyrase helicase 52.4 47 0.0016 35.2 9.7 94 495-590 46-145 (414)
207 1n0w_A DNA repair protein RAD5 51.9 1.2E+02 0.0042 28.8 12.1 26 168-193 22-47 (243)
208 3cf2_A TER ATPase, transitiona 51.7 19 0.00066 42.3 6.7 26 168-193 509-534 (806)
209 3zyw_A Glutaredoxin-3; metal b 48.9 60 0.0021 27.6 8.0 57 514-570 15-77 (111)
210 3ipz_A Monothiol glutaredoxin- 48.9 57 0.0019 27.5 7.8 57 514-570 17-79 (109)
211 2r8r_A Sensor protein; KDPD, P 48.4 19 0.00064 35.4 5.1 30 170-199 6-35 (228)
212 2ffh_A Protein (FFH); SRP54, s 47.7 55 0.0019 35.3 9.2 34 173-213 101-134 (425)
213 3cmw_A Protein RECA, recombina 46.3 90 0.0031 39.8 11.9 45 168-219 730-774 (1706)
214 1qvr_A CLPB protein; coiled co 46.3 28 0.00095 41.4 7.2 26 171-196 589-614 (854)
215 4ehx_A Tetraacyldisaccharide 4 45.9 26 0.00088 36.3 6.0 17 180-196 48-64 (315)
216 3of5_A Dethiobiotin synthetase 45.5 15 0.00051 36.0 3.9 28 173-200 8-35 (228)
217 3cmu_A Protein RECA, recombina 45.0 87 0.003 40.7 11.5 46 169-221 731-776 (2050)
218 1wp9_A ATP-dependent RNA helic 44.4 60 0.002 34.6 9.1 90 495-590 33-131 (494)
219 2j37_W Signal recognition part 43.8 87 0.003 34.5 10.2 35 172-213 103-137 (504)
220 3gx8_A Monothiol glutaredoxin- 43.3 1.1E+02 0.0037 26.4 8.8 63 514-576 15-86 (121)
221 3qxc_A Dethiobiotin synthetase 42.9 17 0.0006 36.0 4.0 27 173-199 25-51 (242)
222 2wul_A Glutaredoxin related pr 41.1 81 0.0028 27.3 7.5 65 514-578 19-90 (118)
223 3a10_A Response regulator; pho 40.9 53 0.0018 27.0 6.4 70 536-608 43-115 (116)
224 1g3q_A MIND ATPase, cell divis 40.9 25 0.00084 34.1 4.7 33 174-213 7-39 (237)
225 3cf2_A TER ATPase, transitiona 40.6 15 0.00051 43.2 3.5 26 168-193 236-261 (806)
226 1t1v_A SH3BGRL3, SH3 domain-bi 40.6 39 0.0013 27.5 5.2 55 516-570 3-66 (93)
227 3eqz_A Response regulator; str 40.0 67 0.0023 27.1 7.1 74 539-612 47-127 (135)
228 1cp2_A CP2, nitrogenase iron p 40.0 18 0.00063 35.8 3.7 21 178-198 9-29 (269)
229 3fgn_A Dethiobiotin synthetase 39.9 21 0.00071 35.7 4.0 27 173-199 30-56 (251)
230 3kjh_A CO dehydrogenase/acetyl 39.8 13 0.00045 36.2 2.5 28 178-212 8-35 (254)
231 2r44_A Uncharacterized protein 39.0 16 0.00056 37.6 3.2 25 170-194 46-70 (331)
232 3fwy_A Light-independent proto 38.7 21 0.00071 36.9 3.9 26 180-212 58-83 (314)
233 3end_A Light-independent proto 38.2 21 0.00073 36.3 3.9 22 177-198 48-69 (307)
234 1hyq_A MIND, cell division inh 38.2 31 0.0011 34.0 5.1 32 174-212 7-38 (263)
235 1j8m_F SRP54, signal recogniti 38.0 71 0.0024 32.5 7.8 34 173-213 101-134 (297)
236 2oze_A ORF delta'; para, walke 37.9 22 0.00074 36.0 3.9 22 177-198 44-65 (298)
237 2zts_A Putative uncharacterize 37.7 47 0.0016 32.0 6.3 47 169-221 29-75 (251)
238 3q9l_A Septum site-determining 37.5 29 0.001 34.0 4.7 31 175-212 8-38 (260)
239 2afh_E Nitrogenase iron protei 37.4 23 0.00077 35.8 3.9 21 178-198 10-30 (289)
240 1t6n_A Probable ATP-dependent 37.2 1.7E+02 0.0059 27.3 10.3 63 495-557 61-130 (220)
241 2z43_A DNA repair and recombin 37.2 1.4E+02 0.0049 30.4 10.2 47 168-215 105-151 (324)
242 1tue_A Replication protein E1; 36.7 30 0.001 33.5 4.3 27 168-194 56-82 (212)
243 2jtq_A Phage shock protein E; 36.2 62 0.0021 25.6 5.7 43 505-548 32-75 (85)
244 2ph1_A Nucleotide-binding prot 36.0 32 0.0011 34.1 4.7 32 174-212 23-54 (262)
245 3u4q_B ATP-dependent helicase/ 35.0 34 0.0012 42.2 5.6 52 173-229 5-56 (1166)
246 2j48_A Two-component sensor ki 34.9 36 0.0012 27.8 4.3 16 593-608 101-116 (119)
247 3cio_A ETK, tyrosine-protein k 34.5 37 0.0013 34.6 5.0 31 175-212 110-140 (299)
248 2wem_A Glutaredoxin-related pr 34.4 94 0.0032 26.7 6.9 57 514-570 19-82 (118)
249 3k9g_A PF-32 protein; ssgcid, 34.2 23 0.00078 35.2 3.3 29 176-212 34-62 (267)
250 2qxy_A Response regulator; reg 33.8 1.1E+02 0.0037 26.1 7.5 27 515-541 5-31 (142)
251 1ofh_A ATP-dependent HSL prote 33.7 34 0.0011 34.5 4.5 26 169-194 49-74 (310)
252 3zq6_A Putative arsenical pump 33.4 37 0.0013 35.0 4.9 35 173-214 17-51 (324)
253 3lte_A Response regulator; str 33.1 47 0.0016 28.1 4.9 30 514-543 6-35 (132)
254 3pg5_A Uncharacterized protein 32.8 24 0.00081 37.2 3.3 26 180-212 12-37 (361)
255 3g5j_A Putative ATP/GTP bindin 32.7 60 0.0021 28.0 5.5 35 515-549 90-125 (134)
256 2eyq_A TRCF, transcription-rep 32.7 1.5E+02 0.005 36.5 10.7 90 495-586 634-727 (1151)
257 1cr0_A DNA primase/helicase; R 32.5 87 0.003 31.4 7.5 41 168-214 33-73 (296)
258 1wik_A Thioredoxin-like protei 32.3 97 0.0033 25.9 6.6 56 514-569 14-75 (109)
259 3bfv_A CAPA1, CAPB2, membrane 32.2 40 0.0014 33.8 4.7 30 176-212 89-118 (271)
260 3foj_A Uncharacterized protein 32.1 32 0.0011 28.4 3.4 36 513-548 55-90 (100)
261 1u0j_A DNA replication protein 31.3 57 0.002 32.7 5.6 25 170-194 104-128 (267)
262 2yan_A Glutaredoxin-3; oxidore 31.3 1.7E+02 0.0057 24.1 7.9 56 514-569 16-77 (105)
263 3ug7_A Arsenical pump-driving 31.1 44 0.0015 34.9 5.0 33 173-212 29-61 (349)
264 3gk5_A Uncharacterized rhodane 30.6 32 0.0011 29.0 3.1 37 513-549 54-90 (108)
265 3hws_A ATP-dependent CLP prote 30.6 46 0.0016 34.8 5.0 26 169-194 50-75 (363)
266 2wci_A Glutaredoxin-4; redox-a 30.5 1.2E+02 0.0042 26.7 7.2 56 515-570 35-96 (135)
267 4ddu_A Reverse gyrase; topoiso 30.5 1.1E+02 0.0036 37.5 8.9 94 495-590 103-202 (1104)
268 3ea0_A ATPase, para family; al 30.3 41 0.0014 32.6 4.3 31 175-212 10-41 (245)
269 2oxc_A Probable ATP-dependent 30.1 1.6E+02 0.0054 28.1 8.6 74 495-574 71-151 (230)
270 3eme_A Rhodanese-like domain p 30.0 32 0.0011 28.5 3.1 36 513-548 55-90 (103)
271 3ber_A Probable ATP-dependent 30.0 2.5E+02 0.0086 27.1 10.3 91 495-590 90-192 (249)
272 3la6_A Tyrosine-protein kinase 29.9 47 0.0016 33.7 4.8 32 174-212 97-128 (286)
273 3iwh_A Rhodanese-like domain p 29.6 35 0.0012 28.7 3.1 36 513-548 55-90 (103)
274 3h5i_A Response regulator/sens 28.8 1.4E+02 0.0048 25.4 7.4 87 513-605 4-98 (140)
275 2xj4_A MIPZ; replication, cell 28.8 43 0.0015 33.7 4.3 38 177-221 12-52 (286)
276 1wcv_1 SOJ, segregation protei 28.7 36 0.0012 33.6 3.6 29 177-212 14-42 (257)
277 3cf0_A Transitional endoplasmi 28.5 31 0.0011 35.1 3.2 27 168-194 47-73 (301)
278 2r62_A Cell division protease 28.4 29 0.001 34.3 2.9 26 169-194 43-68 (268)
279 3i42_A Response regulator rece 28.2 45 0.0016 28.0 3.8 93 514-612 27-124 (127)
280 2woo_A ATPase GET3; tail-ancho 27.8 52 0.0018 34.0 4.8 33 173-212 22-54 (329)
281 2lqo_A Putative glutaredoxin R 27.3 1.7E+02 0.0058 23.8 7.0 46 515-560 4-50 (92)
282 1v5w_A DMC1, meiotic recombina 27.3 3.4E+02 0.012 27.8 11.1 47 168-215 120-166 (343)
283 3gbj_A KIF13B protein; kinesin 27.1 50 0.0017 34.7 4.5 21 168-188 90-111 (354)
284 1wv9_A Rhodanese homolog TT165 27.1 46 0.0016 27.0 3.4 35 515-549 54-88 (94)
285 3dc4_A Kinesin-like protein NO 27.0 42 0.0014 35.1 3.8 20 168-187 92-112 (344)
286 4dpp_A DHDPS 2, dihydrodipicol 26.8 2.2E+02 0.0077 29.7 9.4 108 527-635 82-207 (360)
287 3fe2_A Probable ATP-dependent 26.7 3.1E+02 0.011 26.1 10.2 91 495-590 76-182 (242)
288 3pxg_A Negative regulator of g 26.4 54 0.0018 35.8 4.8 28 169-196 200-227 (468)
289 1lv7_A FTSH; alpha/beta domain 26.3 41 0.0014 33.0 3.6 25 170-194 45-69 (257)
290 2nr8_A Kinesin-like protein KI 26.1 45 0.0015 35.1 3.9 21 168-188 101-122 (358)
291 2owm_A Nckin3-434, related to 25.7 52 0.0018 35.7 4.4 22 168-189 134-156 (443)
292 3cg4_A Response regulator rece 25.4 1.8E+02 0.0062 24.5 7.5 29 514-542 7-35 (142)
293 2k0z_A Uncharacterized protein 25.3 1E+02 0.0035 25.7 5.5 38 512-549 54-91 (110)
294 2ct6_A SH3 domain-binding glut 25.3 74 0.0025 26.9 4.5 46 515-560 8-60 (111)
295 3nbx_X ATPase RAVA; AAA+ ATPas 24.6 36 0.0012 37.7 2.9 26 169-194 40-65 (500)
296 3t0q_A AGR253WP; kinesin, alph 24.2 56 0.0019 34.2 4.2 21 168-188 83-104 (349)
297 4etp_A Kinesin-like protein KA 24.1 58 0.002 34.8 4.4 21 168-188 138-159 (403)
298 3grc_A Sensor protein, kinase; 24.0 1.4E+02 0.0047 25.4 6.3 27 515-541 7-33 (140)
299 3cwq_A Para family chromosome 24.0 74 0.0025 30.2 4.8 38 176-221 7-46 (209)
300 2w0m_A SSO2452; RECA, SSPF, un 23.9 1.3E+02 0.0046 28.2 6.8 40 169-215 22-61 (235)
301 3ez2_A Plasmid partition prote 23.5 52 0.0018 34.9 3.9 20 177-196 116-135 (398)
302 4a14_A Kinesin, kinesin-like p 23.4 58 0.002 34.0 4.1 21 168-188 81-102 (344)
303 3iqw_A Tail-anchored protein t 23.4 61 0.0021 33.6 4.3 32 174-212 20-51 (334)
304 1bg2_A Kinesin; motor protein, 23.3 57 0.0019 33.8 4.0 22 168-189 75-97 (325)
305 2wbe_C Bipolar kinesin KRP-130 23.1 60 0.002 34.3 4.2 22 168-189 98-120 (373)
306 3flh_A Uncharacterized protein 23.0 43 0.0015 29.0 2.6 37 513-549 70-108 (124)
307 3hix_A ALR3790 protein; rhodan 22.9 54 0.0019 27.4 3.2 37 513-549 51-88 (106)
308 2pl3_A Probable ATP-dependent 22.7 2.6E+02 0.009 26.4 8.7 56 513-574 96-155 (236)
309 3nwn_A Kinesin-like protein KI 22.4 51 0.0018 34.6 3.5 21 168-188 102-123 (359)
310 1xti_A Probable ATP-dependent 22.3 3.4E+02 0.012 27.6 10.2 62 496-557 56-124 (391)
311 1um8_A ATP-dependent CLP prote 22.2 51 0.0018 34.5 3.5 26 169-194 71-96 (376)
312 1ihu_A Arsenical pump-driving 22.2 74 0.0025 35.7 5.0 33 173-212 11-43 (589)
313 2fsx_A RV0390, COG0607: rhodan 22.2 62 0.0021 28.9 3.6 37 513-549 79-116 (148)
314 2woj_A ATPase GET3; tail-ancho 22.1 70 0.0024 33.4 4.5 34 174-214 22-57 (354)
315 2hhg_A Hypothetical protein RP 21.9 60 0.0021 28.4 3.4 37 513-549 85-122 (139)
316 2y65_A Kinesin, kinesin heavy 21.5 64 0.0022 34.0 4.0 22 168-189 82-104 (365)
317 3lre_A Kinesin-like protein KI 21.5 56 0.0019 34.3 3.6 21 168-188 103-124 (355)
318 1v8k_A Kinesin-like protein KI 21.5 53 0.0018 35.2 3.3 22 168-189 152-174 (410)
319 2zfi_A Kinesin-like protein KI 21.5 64 0.0022 34.0 4.0 22 168-189 87-109 (366)
320 2yxb_A Coenzyme B12-dependent 21.3 1.8E+02 0.0062 26.4 6.7 59 513-575 17-79 (161)
321 3b6u_A Kinesin-like protein KI 21.3 64 0.0022 34.1 3.9 22 168-189 99-121 (372)
322 3igf_A ALL4481 protein; two-do 21.3 42 0.0014 35.6 2.5 20 179-198 11-30 (374)
323 1goj_A Kinesin, kinesin heavy 21.2 64 0.0022 33.9 3.9 22 168-189 78-100 (355)
324 1e9r_A Conjugal transfer prote 21.2 82 0.0028 33.7 5.0 39 170-215 53-91 (437)
325 3nhv_A BH2092 protein; alpha-b 21.1 61 0.0021 28.9 3.3 37 513-549 71-109 (144)
326 2rdm_A Response regulator rece 20.9 1.8E+02 0.0061 24.1 6.3 17 594-610 107-123 (132)
327 1y80_A Predicted cobalamin bin 20.8 2.3E+02 0.0077 26.8 7.6 58 513-574 87-148 (210)
328 3cmw_A Protein RECA, recombina 20.8 3.2E+02 0.011 34.9 10.7 41 173-220 1434-1475(1706)
329 1tq1_A AT5G66040, senescence-a 20.7 60 0.0021 28.2 3.1 37 513-549 81-118 (129)
330 3nhm_A Response regulator; pro 20.3 2.2E+02 0.0076 23.6 6.9 91 514-610 27-122 (133)
331 2qen_A Walker-type ATPase; unk 20.1 60 0.0021 33.1 3.5 38 284-321 129-173 (350)
332 3d1p_A Putative thiosulfate su 20.1 48 0.0016 29.2 2.3 38 512-549 89-127 (139)
333 1t5c_A CENP-E protein, centrom 20.1 60 0.0021 34.0 3.4 22 168-189 75-97 (349)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-114 Score=1011.26 Aligned_cols=643 Identities=68% Similarity=1.127 Sum_probs=588.8
Q ss_pred cccccccccccCCCCCCCCcccccCCCCCChhhhhcccccccceeeeeCchhhcCCcHHHHHHHHHHHHHhhcccccCCc
Q psy5647 92 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAY 171 (755)
Q Consensus 92 ~~~~~~~~~~~~~dp~~~~~lv~~~p~~~~~~~~~~~~~~~~~~~v~v~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~ 171 (755)
||+|+...++++|||..++++++|.||+++.++.++.+.+..++++++||.+...|||||++||+||++++.|.+..++.
T Consensus 1 ~~~~~~~~~~~l~dp~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~ 80 (644)
T 1z3i_X 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSY 80 (644)
T ss_dssp CCSSCSSSCCCSSCTTSTTCCEEECCCCCCHHHHHHSCGGGSCCCEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCC
T ss_pred CCCCCCCCCCCCCCCCccCceecCCCCCCCHHHHhhhccccCCceEeeChhhhhcccHHHHHHHHHHHHhhhcccccCCC
Confidence 68888888999999999999999999999999988888888888999999999999999999999999999887666788
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNS 251 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~ 251 (755)
||||||+||+|||+|+|++++.++..++..+|..+++|||||.+++.||.+||.+|++..+.++.++++.+......+..
T Consensus 81 g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (644)
T 1z3i_X 81 GCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVN 160 (644)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHH
T ss_pred CeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999888888888999999999999999999999987777888888887777777777
Q ss_pred HHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHH
Q psy5647 252 FMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331 (755)
Q Consensus 252 ~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~s 331 (755)
+....+.....+|+|+||++++.+...+....|++|||||||++||..+++++++..+++++||+|||||++|++.|||+
T Consensus 161 ~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~s 240 (644)
T 1z3i_X 161 FISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240 (644)
T ss_dssp HHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHH
T ss_pred HHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHH
Confidence 76655544567899999999999999898899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCC
Q psy5647 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT 411 (755)
Q Consensus 332 ll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls 411 (755)
+++|++|+.+++..+|.+.|..||..+++.+++..+...+.+++.+|+.++.+|++||+++++..+||++.+.+++|+||
T Consensus 241 ll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls 320 (644)
T 1z3i_X 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLT 320 (644)
T ss_dssp HHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCC
T ss_pred HHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhh
Q psy5647 412 DLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491 (755)
Q Consensus 412 ~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (755)
+.|+++|+.++........+..+ ......+..++.||++||||.++........++++.....+|..+. ....
T Consensus 321 ~~q~~lY~~~~~~~~~~~~~~~g---~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 393 (644)
T 1z3i_X 321 PLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS----TKAV 393 (644)
T ss_dssp HHHHHHHHHHHHHHCGGGSSCTT---CCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCC----SSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---ccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhcccccc----cccc
Confidence 99999999997654322112222 2345678999999999999999988776666666666666666552 2334
Q ss_pred hHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCC-ceEEE
Q psy5647 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFM 570 (755)
Q Consensus 492 ~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~-~~v~L 570 (755)
....|+|+.+|..++..++...++|+||||+++.+++.|+.+|...|+.+.+++|+++.++|++++++|+++.. .++||
T Consensus 394 ~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L 473 (644)
T 1z3i_X 394 EPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473 (644)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEE
T ss_pred CcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Confidence 45679999999999999876678999999999999999999999999999999999999999999999999544 56899
Q ss_pred eecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCch
Q psy5647 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE 650 (755)
Q Consensus 571 lSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~ 650 (755)
+|+++||+||||++|++||+||++|||+.+.||+||+||+||+++|+||+|++.||+||+|+++|..|+.+++.++++++
T Consensus 474 ~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ 553 (644)
T ss_dssp EEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSS
T ss_pred EecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhccCCHHHHHhccccCCCCccccccccccccccCCcccCCCCCCCCCcccccccccccCCCCCCchHHHhhhcccccE
Q psy5647 651 DVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSF 730 (755)
Q Consensus 651 ~~~~~~s~~el~~Lf~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 730 (755)
...+.|+.+||++||++++++.|+|||.++|.+|.++.+..+|+++.++++|+++|+|+.+.++++|++|+++|+..|||
T Consensus 554 ~~~~~~~~~~l~~Lf~~~~~~~~~t~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 633 (644)
T 1z3i_X 554 DVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSF 633 (644)
T ss_dssp SCCCSSCHHHHHHHTCCCSSCSCHHHHHHTCSSEETTEECSCCCTTCCTTSCGGGSEEESSSTTCSCHHHHHHCSTTEEE
T ss_pred hhhcCCCHHHHHHHhCCCCCccchhhhhhhCccCCCCcccCCChhcccchhhhhhceeccccCCCCcHHHHHhhcCCeEE
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccchhhh
Q psy5647 731 VFYQHSTKAEK 741 (755)
Q Consensus 731 ~~~~~~~~~~~ 741 (755)
||+++||++|+
T Consensus 634 ~~~~~~~~~~~ 644 (644)
T 1z3i_X 634 VFHQRSHEDQR 644 (644)
T ss_dssp EEEEESSCTTC
T ss_pred EEecccccccC
Confidence 99999999874
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-79 Score=732.77 Aligned_cols=492 Identities=29% Similarity=0.472 Sum_probs=392.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...|||||++||+||...+ ..+.||||||+||||||+|+|+++..++...... +++|||||.+++.||.+|
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~-----~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~----~~~LIV~P~sll~qW~~E 304 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLW-----SKGDNGILADEMGLGKTVQTVAFISWLIFARRQN----GPHIIVVPLSTMPAWLDT 304 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHH-----TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC----SCEEEECCTTTHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh-----hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC----CCEEEEECchHHHHHHHH
Confidence 5799999999999998776 5678999999999999999999999887655433 458999999999999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHH------hCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCC
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQT------YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn 297 (755)
|.+|+|. ..++.+.|...... .+..+... ......++|+|+||+++..+...+....|++|||||||++||
T Consensus 305 ~~~~~p~-~~v~~~~g~~~~r~--~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 305 FEKWAPD-LNCICYMGNQKSRD--TIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKN 381 (800)
T ss_dssp HHHHSTT-CCEEECCCSSHHHH--HHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCC
T ss_pred HHHHCCC-ceEEEEeCCHHHHH--HHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcC
Confidence 9999986 56666666554322 12221100 112356789999999999999999999999999999999999
Q ss_pred CccHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 298 CESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 298 ~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
..++.++++..+++.+||+|||||++|++.|||++++|+.|+.|+....|.-.... ....+.+..
T Consensus 382 ~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~~ 446 (800)
T 3mwy_W 382 AESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIHD 446 (800)
T ss_dssp SSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHHH
T ss_pred chhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---------------hhHHHHHHH
Confidence 99999999999999999999999999999999999999999999877665422111 122455788
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
|+.++.++++||++.++...||++.+.+++|.||+.|+++|+.++.... ..+..+. .......+..++.|+++|+||
T Consensus 447 L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~--~~l~~~~-~~~~~~~l~~l~~Lrk~~~hp 523 (800)
T 3mwy_W 447 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNY--SALTAGA-KGGHFSLLNIMNELKKASNHP 523 (800)
T ss_dssp HHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCC--C-----------CTHHHHHHHHHHHHHCG
T ss_pred HHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHH--HHHhhcc-ccchhhHHHHHHHHHHHhcCh
Confidence 9999999999999999999999999999999999999999999876421 1111111 123456888999999999999
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
+++......... .+..+...........+..|+|+.+|.++|..+.. .++|+||||+++.++++|+.+|...
T Consensus 524 ~l~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~-~g~kvLIFsq~~~~ld~L~~~L~~~ 595 (800)
T 3mwy_W 524 YLFDNAEERVLQ-------KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK-DGHRVLIFSQMVRMLDILGDYLSIK 595 (800)
T ss_dssp GGSSSHHHHHCC-------CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hhhcchHHHHHH-------hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh-CCCeEEEEechHHHHHHHHHHHHhC
Confidence 998543221110 00011100011123456779999999999999874 4789999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|+++.+++|+++.++|++++++||+ +...++||+||+|||+||||++|++||+||++|||+.+.||+||+||+||+++|
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceE
Confidence 9999999999999999999999998 556679999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchh------hhccCCHHHHHhccccCCCCcc
Q psy5647 617 FVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEED------VARHFSMSELRSLFQLEENTIS 673 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~------~~~~~s~~el~~Lf~~~~~~~~ 673 (755)
+||||++.||+||+|++++..|+.|...+++.+.. ....++.+||.+|+.++...+-
T Consensus 676 ~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~ 738 (800)
T 3mwy_W 676 MVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMF 738 (800)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhh
Confidence 99999999999999999999999999999975421 1246899999999998875543
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.3e-74 Score=661.76 Aligned_cols=465 Identities=28% Similarity=0.453 Sum_probs=396.3
Q ss_pred CchhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 140 DPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 140 ~p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
|+.+...|||||++|+.|+.... ..+.|+||||+||+|||+++++++..+...++ .+++|||||.+++.|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~-----~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P~~l~~q 100 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMN-----KLGFGICLADDMGLGKTLQTIAVFSDAKKENE-----LTPSLVICPLSVLKN 100 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHH-----HTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC-----CSSEEEEECSTTHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHh-----hCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC-----CCCEEEEccHHHHHH
Confidence 56677899999999999997754 35679999999999999999999998876653 356999999999999
Q ss_pred HHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 220 WCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 220 W~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
|.+||.+|++. ..+..+.++... .....++|+|+||+++..... +....|++||+||||+++|..
T Consensus 101 w~~e~~~~~~~-~~v~~~~g~~~~-------------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~ 165 (500)
T 1z63_A 101 WEEELSKFAPH-LRFAVFHEDRSK-------------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQ 165 (500)
T ss_dssp HHHHHHHHCTT-SCEEECSSSTTS-------------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTT
T ss_pred HHHHHHHHCCC-ceEEEEecCchh-------------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHh
Confidence 99999999985 455555554321 011246899999999987765 667899999999999999999
Q ss_pred cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 300 s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
++.++++..+.+++||+|||||++|++.|+|++++|++|+.+++...|.+.|..|+..+. .....+|.
T Consensus 166 ~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~------------~~~~~~l~ 233 (500)
T 1z63_A 166 TKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKEELK 233 (500)
T ss_dssp SHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC------------HHHHHHHH
T ss_pred HHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999886642 23456788
Q ss_pred HhHhHHHHhcchhH--hhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 380 GIVNRCLIRRTSAL--LSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 380 ~~l~~~~lRRt~~~--v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
.++.++++||++.+ +...||++.+.+++|++++.|+++|+.+..... ..+............+..+..|+++|+||
T Consensus 234 ~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~lr~~~~~p 311 (500)
T 1z63_A 234 AIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLF--NNIDSVTGIKRKGMILSTLLKLKQIVDHP 311 (500)
T ss_dssp HHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHT--TTTTTCCTHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHH--HHHHhhhcccchHHHHHHHHHHHHHhCCH
Confidence 89999999999875 667899999999999999999999998865321 11111111122345678889999999999
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
.++... ......++|+..+.+++..+.. .++|+||||+++.+++.+...|...
T Consensus 312 ~l~~~~--------------------------~~~~~~s~K~~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~ 364 (500)
T 1z63_A 312 ALLKGG--------------------------EQSVRRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKE 364 (500)
T ss_dssp HHHHCS--------------------------CCCSTTCHHHHHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHhcCc--------------------------cchhhcchhHHHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHh
Confidence 987521 0112458899999999988764 5789999999999999999999986
Q ss_pred -CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 538 -GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 538 -g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|+.+..++|+++.++|++++++|++++...++|+|++++|+||||++|++||+||++|||+.+.||+||++|+||+++|
T Consensus 365 ~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 365 LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNV 444 (500)
T ss_dssp HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCE
T ss_pred hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCee
Confidence 9999999999999999999999999766668999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCCC
Q psy5647 617 FVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEEN 670 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~ 670 (755)
+||+|++.||+||+|++++..|..+++.++++++.....++.+||++||.+++.
T Consensus 445 ~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 445 IVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp EEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHHhccCCC
Confidence 999999999999999999999999999999988888899999999999998764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.1e-51 Score=500.58 Aligned_cols=444 Identities=19% Similarity=0.247 Sum_probs=331.3
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
....|+|||.+++.|++. ....|+||||+||+|||+++++++..++..+. .+++|||||.+|+.||.+
T Consensus 150 ~~~~LrpyQ~eav~~~l~-------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----~~rvLIVvP~sLl~Qw~~ 217 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR-------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-----AERVLIIVPETLQHQWLV 217 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH-------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----CCCEEEECCTTTHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH-------hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHHHHHHH
Confidence 346899999999999876 34678999999999999999999999987764 356999999999999999
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh---hhhhcCCccEEEEeCCcccCCCc
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~---~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
||.+|++..+ ..+++..... ........-...+|+|+||+++.... ..+....|++|||||||+++|..
T Consensus 218 E~~~~f~l~v--~v~~~~~~~~------~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~ 289 (968)
T 3dmq_A 218 EMLRRFNLRF--ALFDDERYAE------AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSE 289 (968)
T ss_dssp HHHHHSCCCC--EECCHHHHHH------HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBT
T ss_pred HHHHHhCCCE--EEEccchhhh------hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCC
Confidence 9999996433 3333221111 11111112235689999999997653 44667799999999999999977
Q ss_pred cH---HHHHHHcc--ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccc---------cC-------
Q psy5647 300 SQ---TYQALMGL--KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPIL---------RG------- 358 (755)
Q Consensus 300 s~---~~~al~~l--~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~---------~g------- 358 (755)
+. .++++..+ +++++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+
T Consensus 290 ~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 290 DAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp TBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred CcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 54 48888887 78899999999999999999999999999999999988866432110 00
Q ss_pred -------------------CCCCCCHHHHHHHHHHHHHHHHhH-----hHHHHhcchhHhhccCCCceEEEEEEcCCHHH
Q psy5647 359 -------------------QDSCASDAERTKANERLEQLIGIV-----NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414 (755)
Q Consensus 359 -------------------~~~~~~~~~~~~~~~~~~~L~~~l-----~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q 414 (755)
....... . ...+...+..++ ...++|+++..+. .+|.+....+.+.+++.+
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~-~---~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~ 444 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSED-A---QSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQY 444 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSC-S---TTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhh-h---HHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHH
Confidence 0000000 0 001111222222 2456666666664 689999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHH
Q psy5647 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIE 494 (755)
Q Consensus 415 ~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (755)
...|.... ....... ..... ..+.+|..+...+.. .......
T Consensus 445 ~~~~~~~~-------~~~~~~~--~~~~~--------~~~l~pe~~~~~l~~---------------------~~~~~~~ 486 (968)
T 3dmq_A 445 QTAIKVSG-------IMGARKS--AEDRA--------RDMLYPERIYQEFEG---------------------DNATWWN 486 (968)
T ss_dssp HHHHHHHH-------HTTCCSS--GGGGT--------HHHHCSGGGTTTTTS---------------------SSCCTTT
T ss_pred HHHHHHHh-------hhhhhhh--hHHHH--------hhhcChHHHHHHhhh---------------------hhhcccC
Confidence 88886431 1111110 00000 011223222211100 0112234
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh-cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL-RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~-~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
.+.|+..|..++.. ..+.|+||||++..+++.+...|.. .|+++..++|+++..+|.++++.|+++.+...+|++|
T Consensus 487 ~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp TSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred ccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 57899998888876 4578999999999999999999995 5999999999999999999999999876445678899
Q ss_pred CCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCCchhh
Q psy5647 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652 (755)
Q Consensus 574 ~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~~~~~ 652 (755)
+++++|||++.|++||+||++|||..+.|++||++|.||++.|.||+++..+|+|++|++.+..|..+....+...+.+
T Consensus 564 ~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i 642 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTI 642 (968)
T ss_dssp CCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHH
T ss_pred chhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877666555443
No 5
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.3e-46 Score=390.75 Aligned_cols=258 Identities=26% Similarity=0.388 Sum_probs=199.0
Q ss_pred HHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhh
Q psy5647 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKI 464 (755)
Q Consensus 385 ~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~ 464 (755)
--+||+++++..+||+|.+.+++|+||+.|+++|+.++.... ..+............+..++.||++|+||.++.+.
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~- 88 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLF--NNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG- 88 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS-
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHH--HHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCC-
Confidence 358999999999999999999999999999999999976532 22222211122345788899999999999997521
Q ss_pred hcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-CCcEEE
Q psy5647 465 QTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR-GYKYVR 543 (755)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~-g~~~~~ 543 (755)
......|+|+..|.++|..+.. .++|+||||+++.+++.|+..|... |+++.+
T Consensus 89 -------------------------~~~~~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~ 142 (271)
T 1z5z_A 89 -------------------------EQSVRRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPF 142 (271)
T ss_dssp -------------------------CCCSTTCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCE
T ss_pred -------------------------ccccccCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEE
Confidence 0113458999999999998864 4789999999999999999999985 999999
Q ss_pred EcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEee
Q psy5647 544 LDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623 (755)
Q Consensus 544 ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~ 623 (755)
++|+++.++|++++++|++++...|||+||++||+||||++|++||+||+||||+.+.||+||+||+||+++|+||+|++
T Consensus 143 l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~ 222 (271)
T 1z5z_A 143 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 222 (271)
T ss_dssp ECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee
Confidence 99999999999999999998677789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHhhhhCCchhhhccCCHHHHHhccccCCCC
Q psy5647 624 TGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENT 671 (755)
Q Consensus 624 ~gTiEEkI~~r~~~K~~l~~~vv~~~~~~~~~~s~~el~~Lf~~~~~~ 671 (755)
.||+||+|++++..|..+++.++++++.....+|.+||++||+++++.
T Consensus 223 ~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 270 (271)
T 1z5z_A 223 VGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGG 270 (271)
T ss_dssp TTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCchhhhcCCHHHHHHHhccCCCC
Confidence 999999999999999999999999887777899999999999998754
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.5e-45 Score=410.22 Aligned_cols=443 Identities=15% Similarity=0.154 Sum_probs=281.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|||||.+++.++++ + ++||+++||+|||+++++++..++... ..++|||||. +|+.||.++
T Consensus 8 ~~l~~~Q~~~i~~~~~---------~-~~ll~~~tG~GKT~~~~~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE---------T-NCLIVLPTGLGKTLIAMMIAEYRLTKY------GGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp HCCCHHHHHHHHHGGG---------S-CEEEECCTTSCHHHHHHHHHHHHHHHS------CSCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh---------C-CEEEEcCCCCCHHHHHHHHHHHHHhcC------CCeEEEEECCHHHHHHHHHH
Confidence 4799999999999753 2 899999999999999999988877621 2469999998 899999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCcc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+.+|++. ...+..+.|+......... + . ..+|+|+||+.+..... .+....|++||+||||++++..+
T Consensus 72 ~~~~~~~~~~~v~~~~g~~~~~~~~~~--~-~------~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~ 142 (494)
T 1wp9_A 72 FRRLFNLPPEKIVALTGEKSPEERSKA--W-A------RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYA 142 (494)
T ss_dssp HHHHBCSCGGGEEEECSCSCHHHHHHH--H-H------HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCH
T ss_pred HHHHhCcchhheEEeeCCcchhhhhhh--c-c------CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCc
Confidence 9999863 3456666666544322211 1 1 24799999999987554 44456899999999999997543
Q ss_pred HHHH--HHH-ccccccEEEeecCCCcCCHHHHHHhhhhhcCCC---CCChHHHHHhccCccccC-CCCCCCHHHHHHHHH
Q psy5647 301 QTYQ--ALM-GLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGI---LGTAQEFRKQYETPILRG-QDSCASDAERTKANE 373 (755)
Q Consensus 301 ~~~~--al~-~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~---l~~~~~F~~~f~~pi~~g-~~~~~~~~~~~~~~~ 373 (755)
.... .+. ..+..++|+|||||. |+..+++.++.++.... ......+...|..+.... ...... .
T Consensus 143 ~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 213 (494)
T 1wp9_A 143 YVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP--------E 213 (494)
T ss_dssp HHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC--------H
T ss_pred HHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc--------H
Confidence 2221 122 235788999999999 77777777777776542 222222222222211110 000111 2
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCccc-cccc----------
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTK-LGMT---------- 442 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~-~~~~---------- 442 (755)
....+...+.+++.++.+......+..... ..++.....-... .+...+..+.... ....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (494)
T 1wp9_A 214 IYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQ-----IINEEMAKGNHDLRGLLLYHAMALKLHH 284 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHH-----HHHHHHTTTCCSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHH-----HHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 234566667777777777666555443321 1122221111110 0111111111100 0000
Q ss_pred ------------HHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHh
Q psy5647 443 ------------ALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIK 510 (755)
Q Consensus 443 ------------~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~ 510 (755)
....+..+...+.++.............+....... .........++|+..|.+++....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~k~~~l~~~l~~~~ 356 (494)
T 1wp9_A 285 AIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLL--------VQAKEIGLDHPKMDKLKEIIREQL 356 (494)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHH--------HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHH--------HHHHhcCCCChHHHHHHHHHHHHh
Confidence 111111111111111000000000000000000000 000001135779999988888764
Q ss_pred c-cCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcC--------CCCHHHHHHHHHHHccCCCceEEEeecCCcccccc
Q psy5647 511 M-TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG--------SMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLN 581 (755)
Q Consensus 511 ~-~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG--------~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLN 581 (755)
. ..+.|+|||+++..+++.+.+.|...|+.+..++| +++.++|++++++|+++... +|++|+++|+|||
T Consensus 357 ~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~--vLv~T~~~~~Gld 434 (494)
T 1wp9_A 357 QRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN--VLVATSVGEEGLD 434 (494)
T ss_dssp HHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS--EEEECGGGGGGGG
T ss_pred ccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce--EEEECCccccCCC
Confidence 2 35789999999999999999999999999999999 89999999999999986643 6889999999999
Q ss_pred cCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHh
Q psy5647 582 LIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSS 643 (755)
Q Consensus 582 L~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~ 643 (755)
+++|++||+||++|||..+.|++||++|.|| +.+|+|++.+|+||+++.++..|+.++.
T Consensus 435 l~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 435 VPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp STTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred chhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 8899999999999999999999988764
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=9.2e-41 Score=378.82 Aligned_cols=377 Identities=18% Similarity=0.197 Sum_probs=255.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|||.+++.++. .++++||+++||+|||++++.++..+ + +++|||||. +|+.||.+
T Consensus 91 ~~~l~~~Q~~ai~~i~---------~~~~~ll~~~TGsGKT~~~l~~i~~~---~-------~~~Lvl~P~~~L~~Q~~~ 151 (472)
T 2fwr_A 91 EISLRDYQEKALERWL---------VDKRGCIVLPTGSGKTHVAMAAINEL---S-------TPTLIVVPTLALAEQWKE 151 (472)
T ss_dssp CCCBCHHHHHHHHHHT---------TTTEEEEECCTTSCHHHHHHHHHHHH---C-------SCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH---------hcCCEEEEeCCCCCHHHHHHHHHHHc---C-------CCEEEEECCHHHHHHHHH
Confidence 3589999999999874 23469999999999999999988765 1 458999999 99999999
Q ss_pred HHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccH
Q psy5647 223 EITKWLGGRVA-ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301 (755)
Q Consensus 223 E~~kw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~ 301 (755)
+|.+| + .. +..+.|+... ..+|+|+||+.+......+. ..|++||+||||++.+....
T Consensus 152 ~~~~~-~--~~~v~~~~g~~~~-----------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~ 210 (472)
T 2fwr_A 152 RLGIF-G--EEYVGEFSGRIKE-----------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV 210 (472)
T ss_dssp HGGGG-C--GGGEEEBSSSCBC-----------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH
T ss_pred HHHhC-C--CcceEEECCCcCC-----------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH
Confidence 99995 4 34 5555554321 24799999999987766553 36999999999999986543
Q ss_pred HHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5647 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381 (755)
Q Consensus 302 ~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~ 381 (755)
..+..+.+.++++|||||..++-.+ . .+..+
T Consensus 211 --~~~~~~~~~~~l~lSATp~~~~~~~----------------~-------------------------------~l~~~ 241 (472)
T 2fwr_A 211 --QIAQMSIAPFRLGLTATFEREDGRH----------------E-------------------------------ILKEV 241 (472)
T ss_dssp --HHHHTCCCSEEEEEESCCCCTTSGG----------------G-------------------------------SHHHH
T ss_pred --HHHHhcCCCeEEEEecCccCCCCHH----------------H-------------------------------HHHHH
Confidence 3455668899999999999765221 0 01112
Q ss_pred HhHHHHhcchhHh-hccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhh
Q psy5647 382 VNRCLIRRTSALL-SKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460 (755)
Q Consensus 382 l~~~~lRRt~~~v-~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~ 460 (755)
+.+.+.++...++ ..++++.....+.+++++.++..|+.+..... ..+..... . + ..+.-+
T Consensus 242 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~---~----------~~~~~~ 303 (472)
T 2fwr_A 242 VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYK--QFLRARGI---T---L----------RRAEDF 303 (472)
T ss_dssp TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHH--SCSSSCCC---T---T----------TCCSSS
T ss_pred hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHH--HHHHhcCc---c---c----------cchhhH
Confidence 2233333333333 23578888888999999999998876643221 11111000 0 0 000000
Q ss_pred hhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCc
Q psy5647 461 MDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYK 540 (755)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~ 540 (755)
.......... ... .................+.|+..|.+++.. ..++|+|||+++..+++.+.+.|.
T Consensus 304 ~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~----- 370 (472)
T 2fwr_A 304 NKIVMASGYD-ERA----YEALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL----- 370 (472)
T ss_dssp TTTTTTTCCS-SSS----STTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----
T ss_pred HHHHHHhccC-HHH----HHHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----
Confidence 0000000000 000 000000000112233457788888888876 357899999999999999998874
Q ss_pred EEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC-CcEEEE
Q psy5647 541 YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK-KPCFVY 619 (755)
Q Consensus 541 ~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~-k~V~Vy 619 (755)
+..++|+++..+|+++++.|+++... +|++|+++++|+|++.++.||++|++|||..+.|++||++|.||. +.|.||
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~--vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFR--AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCS--BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCC--EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 45689999999999999999985544 679999999999999999999999999999999999999999998 899999
Q ss_pred EEeeCCCHHHHHHHHHHHHHHhH
Q psy5647 620 RFLSTGSIEEKMMQRQAHKKALS 642 (755)
Q Consensus 620 rlv~~gTiEEkI~~r~~~K~~l~ 642 (755)
+|++.+|+||++.+++..|..++
T Consensus 449 ~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 449 ELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp EEEECSCC---------------
T ss_pred EEEeCCCchHHHHHHHHHhhccC
Confidence 99999999999999998887654
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.5e-36 Score=350.60 Aligned_cols=470 Identities=12% Similarity=0.134 Sum_probs=232.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|||.+++.++. .+.++|++++||+|||++++..+...+...+... ..++|||||. .|+.||.++
T Consensus 6 ~~~~~~Q~~~i~~~~---------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~ 74 (556)
T 4a2p_A 6 KKARSYQIELAQPAI---------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGR--KAKVVFLATKVPVYEQQKNV 74 (556)
T ss_dssp --CCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSC--CCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccC--CCeEEEEeCCHHHHHHHHHH
Confidence 478999999999884 3467999999999999999999888877654321 2569999999 899999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--h-hcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--L-HKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l-~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.+|++. .+.+..+.|+...... ...... ..+|+|+|++.+...... + ....|++||+||||++.+..
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 75 FKHHFERQGYSVQGISGENFSNVS--VEKVIE------DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp HHHHHGGGTCCEEECCCC-----C--HHHHHH------HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred HHHHhcccCceEEEEeCCCCcchh--HHHhhC------CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 9999874 4666667776532211 111111 247999999999875533 2 34568999999999998866
Q ss_pred cHHHHHHHcc--------ccccEEEeecCCCcCCH-------HHHHHhhhhhcCC----CCCChHHHHHhccCccccCCC
Q psy5647 300 SQTYQALMGL--------KAKRRVLLSGTPIQNDL-------LEYFSLVHFVNQG----ILGTAQEFRKQYETPILRGQD 360 (755)
Q Consensus 300 s~~~~al~~l--------~~~~rllLTGTPiqN~l-------~El~sll~fl~p~----~l~~~~~F~~~f~~pi~~g~~ 360 (755)
........-+ ...++++|||||.+++. ..+..+...++.. .-.....+...+..|......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (556)
T 4a2p_A 147 PYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 226 (556)
T ss_dssp HHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEE
T ss_pred hHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEE
Confidence 4222111111 23679999999988653 2333333444432 122344555555544432211
Q ss_pred CC--CCHHHHHHHHHHHHHHHHhHhHH----------------------HHhcchhHhhccCCCceEEEEEEcCCHHHHH
Q psy5647 361 SC--ASDAERTKANERLEQLIGIVNRC----------------------LIRRTSALLSKYLPVKTEQVVCIKMTDLQKE 416 (755)
Q Consensus 361 ~~--~~~~~~~~~~~~~~~L~~~l~~~----------------------~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~ 416 (755)
.. ...............+...+..+ +....+......+| ....+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 296 (556)
T 4a2p_A 227 VKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLE----------DKEEESR 296 (556)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC-------------CHHHHHH
T ss_pred cCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhccc----------ccchhHH
Confidence 11 11111111112222222222211 00000000000011 1111222
Q ss_pred HHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccc----cchhhh
Q psy5647 417 LYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY----KSGKLL 492 (755)
Q Consensus 417 lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 492 (755)
+|..+.........+..................++..+..- ... ++......+...+.... ......
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 367 (556)
T 4a2p_A 297 ICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNV-------KNG--PYTELEQHLTAKFQEKEPELIALSKDE 367 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-------HHS--CCCHHHHHHHHHHHTTHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-------Hhc--CCCHHHHHHHHHHhhHHHHhhhhccCC
Confidence 22222111000000000000000000011111111111100 000 00000000000000000 000000
Q ss_pred HHhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHHHHHHHHHhc------------CCcEEEEcCCCCHHHHHHHHHH
Q psy5647 493 IELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLR------------GYKYVRLDGSMTIKKRAKVVET 559 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld~l~~~L~~~------------g~~~~~ldG~~~~~~R~~~v~~ 559 (755)
...++|+..|.++|.... ...+.|+||||+++.+++.+.+.|... |..+..++|+++.++|.+++++
T Consensus 368 ~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~ 447 (556)
T 4a2p_A 368 TNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 447 (556)
T ss_dssp SSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------
T ss_pred CCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHH
Confidence 013789998888886553 245789999999999999999999875 5666677788999999999999
Q ss_pred HccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q psy5647 560 FNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639 (755)
Q Consensus 560 Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~ 639 (755)
|++++... +|++|+++|+|||+++++.||+||++|||..+.||+|| |+.+++.+|.|++.+++||+ +..+..|.
T Consensus 448 F~~~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~ 521 (556)
T 4a2p_A 448 FKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKE 521 (556)
T ss_dssp ------CC-EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHH
T ss_pred hcccCceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHH
Confidence 99833332 67999999999999999999999999999999999999 44578889999999999999 77888888
Q ss_pred HhHhhhhCCchhhhccCCHHHHH
Q psy5647 640 ALSSCVVDCEEDVARHFSMSELR 662 (755)
Q Consensus 640 ~l~~~vv~~~~~~~~~~s~~el~ 662 (755)
.+...++.. .+.++.+++.
T Consensus 522 ~~~~~~i~~----i~~~~~~~~~ 540 (556)
T 4a2p_A 522 EMMNKAVEK----IQKWDEETFA 540 (556)
T ss_dssp HHHHHHHHH----HHTSCHHHHH
T ss_pred HHHHHHHHH----hhcCChHHHH
Confidence 888887653 2334555543
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.4e-36 Score=363.46 Aligned_cols=459 Identities=12% Similarity=0.114 Sum_probs=235.6
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|||.+++.++. .+.++|++++||+|||++++..+...+...+... ..++|||||. .|+.||.+
T Consensus 246 ~~~l~~~Q~~~i~~~l---------~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~--~~~~Lvl~Pt~~L~~Q~~~ 314 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI---------NGKNALICAPTGSGKTFVSILICEHHFQNMPAGR--KAKVVFLATKVPVYEQQKN 314 (797)
T ss_dssp --CCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSC--CCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccC--CCeEEEEeCCHHHHHHHHH
Confidence 4689999999999874 3468999999999999999999988877654311 2569999998 69999999
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--h-hcCCccEEEEeCCcccCCC
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--L-HKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l-~~~~~~lvIiDEaH~lKn~ 298 (755)
+|.+|++. .+.+..+.|+...... ..... ...+|+|+||+.+...... + ....|++||+||||++.+.
T Consensus 315 ~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~------~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 315 VFKHHFERQGYSVQGISGENFSNVS--VEKVI------EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp HHHHHHGGGTCCEEEECCC-----C--HHHHH------HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHhcccCCceEEEEeCCcchhhh--HHHhh------CCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 99999874 4667777776533221 11111 1357999999999865532 2 2335799999999999986
Q ss_pred ccHHHHHHHcc---------ccccEEEeecCCCcCCH----------HHHHHhhhhhcCC-CCCChHHHHHhccCccccC
Q psy5647 299 ESQTYQALMGL---------KAKRRVLLSGTPIQNDL----------LEYFSLVHFVNQG-ILGTAQEFRKQYETPILRG 358 (755)
Q Consensus 299 ~s~~~~al~~l---------~~~~rllLTGTPiqN~l----------~El~sll~fl~p~-~l~~~~~F~~~f~~pi~~g 358 (755)
.+.. ..+..+ ...++++|||||.+++. .+++..++.-... .......+...+..|....
T Consensus 387 ~~~~-~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~ 465 (797)
T 4a2q_A 387 HPYN-VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (797)
T ss_dssp SHHH-HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEE
T ss_pred ccHH-HHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEE
Confidence 5422 212111 23679999999987543 3333333321111 2223355555555554332
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHhHhHHHH----------------------hcchhHhhccCCCceEEEEEEcCCHHH
Q psy5647 359 QDSC--ASDAERTKANERLEQLIGIVNRCLI----------------------RRTSALLSKYLPVKTEQVVCIKMTDLQ 414 (755)
Q Consensus 359 ~~~~--~~~~~~~~~~~~~~~L~~~l~~~~l----------------------RRt~~~v~~~LP~k~e~vv~~~ls~~q 414 (755)
.... ..............++..++..++- ...+......+|. ...+
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 535 (797)
T 4a2q_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEE 535 (797)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS----------HHHH
T ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccc----------cchh
Confidence 1111 1222222222222333333322111 0000000000110 1111
Q ss_pred HHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccc----cchh
Q psy5647 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY----KSGK 490 (755)
Q Consensus 415 ~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 490 (755)
..+|..+.........+..................++..+.+..- . ++......+...+.... ....
T Consensus 536 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~---~~~~~~~~l~~~~~~~~~~l~~~~~ 606 (797)
T 4a2q_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN------G---PYTELEQHLTAKFQEKEPELIALSK 606 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH------T---TCCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhc------c---CccHHHHHHHHHHHHHHHHHHHhhc
Confidence 112211111000000000000000000011111122222111000 0 00000000000000000 0000
Q ss_pred hhHHhhhhHHHHHHHHHHH-hccCCCEEEEEEechhHHHHHHHHHHhc------------CCcEEEEcCCCCHHHHHHHH
Q psy5647 491 LLIELSAKLMVLDTMLAVI-KMTTDDKIVLVSNYTQTLDLFERLSKLR------------GYKYVRLDGSMTIKKRAKVV 557 (755)
Q Consensus 491 ~~~~~S~Kl~~L~~lL~~~-~~~~~~KvlIFs~~~~~ld~l~~~L~~~------------g~~~~~ldG~~~~~~R~~~v 557 (755)
.....++|+..|..+|... ....+.|+||||+++.+++.|.++|+.. |..+..++|+++..+|.+++
T Consensus 607 ~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l 686 (797)
T 4a2q_A 607 DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686 (797)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------
T ss_pred CCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHH
Confidence 0012478999999988764 3345789999999999999999999873 66777888999999999999
Q ss_pred HHHcc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647 558 ETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 558 ~~Fn~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~ 636 (755)
++|++ +... +|++|+++|+|||+++|+.||+||++|||..+.||+|| + +.+++.+|.|++.+++||+ +..+.
T Consensus 687 ~~F~~~g~~~--vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-G---R~~~g~~i~l~~~~~~ee~-~~~~~ 759 (797)
T 4a2q_A 687 DAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNR 759 (797)
T ss_dssp -------CCS--EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHH
T ss_pred HHhhccCCce--EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCCcHHHH-HHHHH
Confidence 99998 4433 78999999999999999999999999999999999999 4 4588889999999999999 77888
Q ss_pred HHHHhHhhhhCC
Q psy5647 637 HKKALSSCVVDC 648 (755)
Q Consensus 637 ~K~~l~~~vv~~ 648 (755)
.|..+...++..
T Consensus 760 ~ke~~~~~~i~~ 771 (797)
T 4a2q_A 760 YKEEMMNKAVEK 771 (797)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887753
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.8e-36 Score=345.29 Aligned_cols=481 Identities=12% Similarity=0.133 Sum_probs=254.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|||.+++.++. .+.++|++++||+|||++++..+...+...+.. ...++|||||. .|+.||.+++
T Consensus 4 ~~~~~Q~~~i~~~~---------~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~ 72 (555)
T 3tbk_A 4 KPRNYQLELALPAK---------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCG--QKGKVVFFANQIPVYEQQATVF 72 (555)
T ss_dssp CCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSS--CCCCEEEECSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHh---------CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccC--CCCEEEEEeCCHHHHHHHHHHH
Confidence 68999999999874 346899999999999999999988887765421 12569999999 8999999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--h-hcCCccEEEEeCCcccCCCcc
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--L-HKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l-~~~~~~lvIiDEaH~lKn~~s 300 (755)
.+|++. .+.+..+.|+...... ...... ..+|+|+||+.+...... + ....|++||+||||++.+..+
T Consensus 73 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~ 144 (555)
T 3tbk_A 73 SRYFERLGYNIASISGATSDSVS--VQHIIE------DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP 144 (555)
T ss_dssp HHHHHTTTCCEEEECTTTGGGSC--HHHHHH------HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH
T ss_pred HHHhccCCcEEEEEcCCCcchhh--HHHHhc------CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch
Confidence 999864 4667777776533211 111111 247999999999876543 2 234689999999999988764
Q ss_pred HHHHHHHcc---------ccccEEEeecCCCcCC-------HHHHHHhhhhhcCCC----CCChHHHHHhccCccccCCC
Q psy5647 301 QTYQALMGL---------KAKRRVLLSGTPIQND-------LLEYFSLVHFVNQGI----LGTAQEFRKQYETPILRGQD 360 (755)
Q Consensus 301 ~~~~al~~l---------~~~~rllLTGTPiqN~-------l~El~sll~fl~p~~----l~~~~~F~~~f~~pi~~g~~ 360 (755)
........+ ...++++|||||.+++ +..+..+...++... -.....+...+..|......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 224 (555)
T 3tbk_A 145 YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRK 224 (555)
T ss_dssp HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEE
T ss_pred HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEE
Confidence 222211211 2257999999999876 344444445554321 22344555544444332211
Q ss_pred CC--CCHHHHHHHHHHHHHHHHhHhHHHHh--cchhHhhccCCCceE-----------EEEEEcCCHHHHHHHHHHHhhH
Q psy5647 361 SC--ASDAERTKANERLEQLIGIVNRCLIR--RTSALLSKYLPVKTE-----------QVVCIKMTDLQKELYTNLIKSD 425 (755)
Q Consensus 361 ~~--~~~~~~~~~~~~~~~L~~~l~~~~lR--Rt~~~v~~~LP~k~e-----------~vv~~~ls~~q~~lY~~~~~~~ 425 (755)
.. ...............+..++..+.-. .........+..... ..........+..+|..+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (555)
T 3tbk_A 225 VASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYT 304 (555)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHH
Confidence 11 11222222222223333322211100 000000000000000 0000000111112222111100
Q ss_pred HHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccc----cchhhhHHhhhhHHH
Q psy5647 426 AVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY----KSGKLLIELSAKLMV 501 (755)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~S~Kl~~ 501 (755)
.....+..................+...+.... ...+......+...+.... .........++|+..
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 375 (555)
T 3tbk_A 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVR---------EAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRD 375 (555)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHC---------C-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHh---------hcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHH
Confidence 000000000000000000011111111100000 0000000000000000000 000001123789999
Q ss_pred HHHHHHHHhc-cCCCEEEEEEechhHHHHHHHHHHhcC------------CcEEEEcCCCCHHHHHHHHHHHccCCCceE
Q psy5647 502 LDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLRG------------YKYVRLDGSMTIKKRAKVVETFNKTSNEFI 568 (755)
Q Consensus 502 L~~lL~~~~~-~~~~KvlIFs~~~~~ld~l~~~L~~~g------------~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v 568 (755)
|.++|..... ..+.|+||||+++.+++.+...|...| ..+..++|+++.++|.+++++|++++...
T Consensus 376 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~- 454 (555)
T 3tbk_A 376 LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN- 454 (555)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS-
T ss_pred HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee-
Confidence 9988876643 346899999999999999999998764 45566667999999999999999833333
Q ss_pred EEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHhHhhhhCC
Q psy5647 569 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDC 648 (755)
Q Consensus 569 ~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~~l~~~vv~~ 648 (755)
+|++|+++|+|||+++++.||+||++|||..+.||+|| |+.+++.+|.|++.++.+++ +..+..|..+....+..
T Consensus 455 vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~ 529 (555)
T 3tbk_A 455 ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESILR 529 (555)
T ss_dssp EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999 66789999999999999998 56667777777766643
Q ss_pred chhhhccCCHHHHHhc
Q psy5647 649 EEDVARHFSMSELRSL 664 (755)
Q Consensus 649 ~~~~~~~~s~~el~~L 664 (755)
...++.+++...
T Consensus 530 ----~~~~~~~~~~~~ 541 (555)
T 3tbk_A 530 ----LQTWDEMKFGKT 541 (555)
T ss_dssp ----HHHSCHHHHHHH
T ss_pred ----ccCCChHHHHHH
Confidence 233455554433
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=5.3e-36 Score=364.60 Aligned_cols=461 Identities=12% Similarity=0.111 Sum_probs=232.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|||.+++.++. .+.++|++++||+|||++++..+...+...+.. ...++|||||. .|+.||.+
T Consensus 246 ~~~~r~~Q~~ai~~il---------~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~--~~~~vLvl~Pt~~L~~Q~~~ 314 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI---------NGKNALICAPTGSGKTFVSILICEHHFQNMPAG--RKAKVVFLATKVPVYEQQKN 314 (936)
T ss_dssp --CCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSS--CCCCEEEECSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEEeCCCchHHHHHHHHHHHHHHhcccc--CCCeEEEEeCCHHHHHHHHH
Confidence 4589999999999984 346899999999999999998887766554321 12569999998 69999999
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--h-hcCCccEEEEeCCcccCCC
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--L-HKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l-~~~~~~lvIiDEaH~lKn~ 298 (755)
+|.+|++. .+.+..+.|+...... ...... ..+|+|+||+.+...... + ....|++||+||||++.+.
T Consensus 315 ~~~~~~~~~~~~v~~~~G~~~~~~~--~~~~~~------~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 315 VFKHHFERQGYSVQGISGENFSNVS--VEKVIE------DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HHHHHHHTTTCCEEEECCC-----C--CHHHHH------HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHHhcccCceEEEEECCcchhhH--HHHhcc------CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 99999874 5677777776533211 111111 247999999999875532 2 2235899999999999987
Q ss_pred ccHHHHHHHcc---------ccccEEEeecCCCcCCHHHHHH-------hhhhhcCC----CCCChHHHHHhccCccccC
Q psy5647 299 ESQTYQALMGL---------KAKRRVLLSGTPIQNDLLEYFS-------LVHFVNQG----ILGTAQEFRKQYETPILRG 358 (755)
Q Consensus 299 ~s~~~~al~~l---------~~~~rllLTGTPiqN~l~El~s-------ll~fl~p~----~l~~~~~F~~~f~~pi~~g 358 (755)
.+ ....+..+ ...++++|||||.+++..++.. +...++.. .......+...+..|....
T Consensus 387 ~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 387 HP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp CH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEE
T ss_pred cc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceE
Confidence 64 22222222 2267999999998865433322 22222222 1223455555555554332
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHhHhHHHH----------------------hcchhHhhccCCCceEEEEEEcCCHHH
Q psy5647 359 QDSC--ASDAERTKANERLEQLIGIVNRCLI----------------------RRTSALLSKYLPVKTEQVVCIKMTDLQ 414 (755)
Q Consensus 359 ~~~~--~~~~~~~~~~~~~~~L~~~l~~~~l----------------------RRt~~~v~~~LP~k~e~vv~~~ls~~q 414 (755)
.... ...............+..++..++. ...+......+|.+ ..+
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~ 535 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEE 535 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc----------chh
Confidence 1111 1112111222222222222222111 00000000011111 111
Q ss_pred HHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhh-hhhhCCccccccccchhhhH
Q psy5647 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN-AMNILPTGYAASYKSGKLLI 493 (755)
Q Consensus 415 ~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 493 (755)
..+|..+.........+..................+...+....- .+....+. ....+...............
T Consensus 536 ~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~------~~~~~~e~~l~~~~~~~~~~l~~~~~~~~ 609 (936)
T 4a2w_A 536 SRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKN------GPYTELEQHLTAKFQEKEPELIALSKDET 609 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 112211111000000000000000000011111112221110000 00000000 00000000000000000001
Q ss_pred HhhhhHHHHHHHHHHHh-ccCCCEEEEEEechhHHHHHHHHHHhc------------CCcEEEEcCCCCHHHHHHHHHHH
Q psy5647 494 ELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLR------------GYKYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~-~~~~~KvlIFs~~~~~ld~l~~~L~~~------------g~~~~~ldG~~~~~~R~~~v~~F 560 (755)
..++|+..|..+|.... ...+.|+||||+++.+++.|.++|... |..+..++|+++..+|.+++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 14789999999888753 345789999999999999999999986 66666778889999999999999
Q ss_pred cc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q psy5647 561 NK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639 (755)
Q Consensus 561 n~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K~ 639 (755)
++ +... +|++|+++|+|||+++++.||+||++|||..+.||+|| |+.+++.+|.|++.+|+||+.+ .+..|.
T Consensus 690 r~~g~~~--VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke 762 (936)
T 4a2w_A 690 KTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKE 762 (936)
T ss_dssp ----CCS--EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHH
T ss_pred hccCCee--EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHH
Confidence 98 4433 78999999999999999999999999999999999999 5557888999999999999866 666677
Q ss_pred HhHhhhhC
Q psy5647 640 ALSSCVVD 647 (755)
Q Consensus 640 ~l~~~vv~ 647 (755)
.++..++.
T Consensus 763 ~~~~~~i~ 770 (936)
T 4a2w_A 763 EMMNKAVE 770 (936)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8.2e-34 Score=337.18 Aligned_cols=446 Identities=14% Similarity=0.144 Sum_probs=225.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|||||.+++.++. .+.++|++++||+|||++++.++...+..++.+. ..++|||+|. +|+.||.++
T Consensus 12 ~~lr~~Q~~~i~~~l---------~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~--~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 12 FKPRNYQLELALPAM---------KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQ--KGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp -CCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTC--CCCEEEECSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH---------cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCC--CCeEEEEECCHHHHHHHHHH
Confidence 479999999999984 3568999999999999999999887776654321 1468999998 999999999
Q ss_pred HHHHhCC-CceEEEecCCCHHH-HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--h-hcCCccEEEEeCCcccCCC
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAE-IDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--L-HKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l-~~~~~~lvIiDEaH~lKn~ 298 (755)
+.+|++. .+.+..+.|+.... ....+. . ..+|+|+||+.+...... + ....|++||+||||++++.
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~------~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~ 151 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIV---E------NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ 151 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHH---H------TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhc---c------CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc
Confidence 9999864 46666666654321 111111 1 258999999999876542 2 3346899999999999987
Q ss_pred ccHHHHHHHcc---------ccccEEEeecCCCcC-------CHHHHHHhhhhhcCCCCC----ChHHHHHhccCccccC
Q psy5647 299 ESQTYQALMGL---------KAKRRVLLSGTPIQN-------DLLEYFSLVHFVNQGILG----TAQEFRKQYETPILRG 358 (755)
Q Consensus 299 ~s~~~~al~~l---------~~~~rllLTGTPiqN-------~l~El~sll~fl~p~~l~----~~~~F~~~f~~pi~~g 358 (755)
.+........+ ...++|+|||||..+ .+.+++.++..++..... ...+.......|....
T Consensus 152 ~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~ 231 (696)
T 2ykg_A 152 HPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFF 231 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEE
T ss_pred ccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeE
Confidence 64332221111 457889999999854 355566666555543221 2233333333332110
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHH----HH
Q psy5647 359 ---QDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRR----TM 431 (755)
Q Consensus 359 ---~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~----~~ 431 (755)
...... ............+..+...++ +. +.. + ..+..++.....|..++....... ..
T Consensus 232 ~~~~~~~~~-~fs~~~~~l~~~i~~l~~~~~-~~----~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (696)
T 2ykg_A 232 RKVESRISD-KFKYIIAQLMRDTESLAKRIC-KD----LEN-L-------SQIQNREFGTQKYEQWIVTVQKACMVFQMP 297 (696)
T ss_dssp EECCCCSCC-HHHHHHHHHHHHHHHHHHHHS-TT----GGG-S-------SSCCSCCSSSHHHHHHHHHHHHTSCC----
T ss_pred EecCcccCC-hHHHHHHHHHHHHHHHHHHHH-HH----HHH-h-------hccccccccchhHHHHHHHHHHHHHHhhcc
Confidence 000011 110011111111111111110 00 000 0 000111111222222211100000 00
Q ss_pred cCCCcccccccHHHHHHHHHHHhCChhhhhhhhhcC--------------ccchhhhhhhCCccccccccc-hhhhH---
Q psy5647 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTG--------------ADGFENAMNILPTGYAASYKS-GKLLI--- 493 (755)
Q Consensus 432 ~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 493 (755)
............+.....|++.. +|..+....... ..........+...+...... .....
T Consensus 298 ~~~~~~~~~~~l~~~~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 376 (696)
T 2ykg_A 298 DKDEESRICKALFLYTSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPS 376 (696)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred cchhhhHHHHHHHHHHHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00000000000111122222221 222211100000 000000000000000000000 00000
Q ss_pred HhhhhHHHHHHHHHHHhc-cCCCEEEEEEechhHHHHHHHHHHhcC----CcEEEEcC--------CCCHHHHHHHHHHH
Q psy5647 494 ELSAKLMVLDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLRG----YKYVRLDG--------SMTIKKRAKVVETF 560 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~-~~~~KvlIFs~~~~~ld~l~~~L~~~g----~~~~~ldG--------~~~~~~R~~~v~~F 560 (755)
..+.|+..|..++..... ..+.++|||++++.+++.+.+.|...| +++..++| +++.++|.+++++|
T Consensus 377 ~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F 456 (696)
T 2ykg_A 377 NENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF 456 (696)
T ss_dssp GCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------------------------
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHH
Confidence 246788888888877532 346799999999999999999999998 89998955 99999999999999
Q ss_pred cc-CCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHH
Q psy5647 561 NK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631 (755)
Q Consensus 561 n~-~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI 631 (755)
++ +... +|++|+++|+|||+++++.||+||++||+..+.|++|| +|. ++..+|.|++.+++++.-
T Consensus 457 ~~~g~~~--vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 457 KASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp ----CCS--CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHHH
T ss_pred HhcCCcc--EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHHH
Confidence 97 4443 57999999999999999999999999999999999999 885 667889999998886643
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=2.4e-34 Score=329.37 Aligned_cols=350 Identities=14% Similarity=0.125 Sum_probs=246.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|||.+++.++.. +.++||+++||+|||++++.++...+..+. .++|||||. +|+.||.++
T Consensus 112 ~~l~~~Q~~ai~~~~~---------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~vlvl~P~~~L~~Q~~~~ 176 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV---------NRRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMADD 176 (510)
T ss_dssp ECCCHHHHHHHHHHHH---------HSEEEEECCSTTTHHHHHHHHHHHHHHHCS------SEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---------cCCcEEEeCCCCCHHHHHHHHHHHHHhCCC------CeEEEEECcHHHHHHHHHH
Confidence 4899999999999865 257899999999999999988887776432 379999998 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
|.+|... ...+..+.++...... .....+|+|+||+.+....... ...|++||+||||++.+. ..
T Consensus 177 ~~~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~I~i~T~~~l~~~~~~~-~~~~~liIiDE~H~~~~~--~~ 242 (510)
T 2oca_A 177 FVDYRLFSHAMIKKIGGGASKDDK-----------YKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SI 242 (510)
T ss_dssp HHHTTSSCGGGEEECGGGCCTTGG-----------GCTTCSEEEEEHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HH
T ss_pred HHHhhcCCccceEEEecCCccccc-----------cccCCcEEEEeHHHHhhchhhh-hhcCCEEEEECCcCCCcc--cH
Confidence 9999543 2455555554322110 0134689999999987653322 236899999999999772 23
Q ss_pred HHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHh
Q psy5647 303 YQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381 (755)
Q Consensus 303 ~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~ 381 (755)
...+..+ .+.++++||||| .+...+++++..++.+.... .+.. ..
T Consensus 243 ~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~----------~~~~-----~~------------------ 288 (510)
T 2oca_A 243 SSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKP----------VTTS-----KL------------------ 288 (510)
T ss_dssp HHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECC----------CCCC-------------------------
T ss_pred HHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEe----------eCHH-----HH------------------
Confidence 3344666 677899999999 55555566666665543211 0000 00
Q ss_pred HhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhhhh
Q psy5647 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461 (755)
Q Consensus 382 l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l~~ 461 (755)
.-...+++.....+.+.+++...... .+.. .-. .+..+
T Consensus 289 -----------~~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~-------~~~---~~~~~-------- 326 (510)
T 2oca_A 289 -----------MEDGQVTELKINSIFLRYPDEFTTKL-------------KGKT-------YQE---EIKII-------- 326 (510)
T ss_dssp ------------------CCEEEEEEEECCHHHHHHH-------------TTCC-------HHH---HHHHH--------
T ss_pred -----------hhCCcCCCceEEEEeecCChHHhccc-------------cccc-------hHH---HHHHH--------
Confidence 00113667777777788776543110 0000 000 00001
Q ss_pred hhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcE
Q psy5647 462 DKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKY 541 (755)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~ 541 (755)
.....|...+..++......++.++|||++ +..++.+.+.|...+.++
T Consensus 327 -------------------------------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v 374 (510)
T 2oca_A 327 -------------------------------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKV 374 (510)
T ss_dssp -------------------------------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSE
T ss_pred -------------------------------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCe
Confidence 111234444555555554445667777777 888888999999998899
Q ss_pred EEEcCCCCHHHHHHHHHHHccCCCceEEEeec-CCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCC-cEEEE
Q psy5647 542 VRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS-KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK-PCFVY 619 (755)
Q Consensus 542 ~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt-~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k-~V~Vy 619 (755)
..++|+++..+|.++++.|+++... +|++| .++++|+|++.++.||++|++||+..+.|++||++|.|+.+ .|.||
T Consensus 375 ~~~~g~~~~~~r~~i~~~f~~g~~~--vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 375 YYVSGEVDTETRNIMKTLAENGKGI--IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp EEESSSTTHHHHHHHHHHHHHCCSC--EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCC--EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999975544 56677 99999999999999999999999999999999999999987 79999
Q ss_pred EEeeCCCHHHHHHH
Q psy5647 620 RFLSTGSIEEKMMQ 633 (755)
Q Consensus 620 rlv~~gTiEEkI~~ 633 (755)
.++...++.++++.
T Consensus 453 ~~~~~~~~~~~~~~ 466 (510)
T 2oca_A 453 DLIDDAGVKPKSAN 466 (510)
T ss_dssp EEEEECCBCCSSSS
T ss_pred Eeecchhhhhhhhh
Confidence 99998876665554
No 14
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=4.6e-34 Score=298.61 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=162.8
Q ss_pred CCCceEEEEEEcCCHHHHHHHHHHHh--hHHHHHHHcCCCccc--ccccHHHHHHHHHHHhCChhhhhhhhhcCccchhh
Q psy5647 398 LPVKTEQVVCIKMTDLQKELYTNLIK--SDAVRRTMKGGENTK--LGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473 (755)
Q Consensus 398 LP~k~e~vv~~~ls~~q~~lY~~~~~--~~~~~~~~~~~~~~~--~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~ 473 (755)
-|++.|++++|.||+.|+++|+.++. ...+...+.+..... ...+....++.||++||||+|+.+....
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p------- 92 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMP------- 92 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCC-------
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCC-------
Confidence 49999999999999999999999985 344555554433211 1124567789999999999998532211
Q ss_pred hhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHH
Q psy5647 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKR 553 (755)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R 553 (755)
..+. ........++.|||+.+|++||..+++ .++|||||||+++++|++|++|..+|+.|.|+||++... +
T Consensus 93 ------~~~~-~~~~~~~l~~~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~ 163 (328)
T 3hgt_A 93 ------KSLI-TRDVPAHLAENSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-A 163 (328)
T ss_dssp ------SCSC-STTHHHHHHHTCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC----
T ss_pred ------cccc-ccchhhHHHHcCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-h
Confidence 1110 001234567799999999999999985 589999999999999999999999999999999996543 3
Q ss_pred HHHHHHHccCCCceEEEeecCCcccccc-----cCCCCEEEEeCCCCCCCcH-HHHhHhhhcc--CCCCcEEEEEEeeCC
Q psy5647 554 AKVVETFNKTSNEFIFMLSSKAGGCGLN-----LIGANRLVMFDPDWNPAND-DQAMARVWRD--GQKKPCFVYRFLSTG 625 (755)
Q Consensus 554 ~~~v~~Fn~~~~~~v~LlSt~agg~GLN-----L~~a~~vI~~D~~WNp~~~-~Qa~gR~~R~--GQ~k~V~Vyrlv~~g 625 (755)
++. .+...+++|+ +.+||.|+| |++|++||+||++|||+.+ .||+.|+||+ ||+|+|.||||++.+
T Consensus 164 ~k~-----~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 164 AAA-----NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ---------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred hhc-----ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 221 1355677776 568888886 8999999999999999998 9999999999 789999999999999
Q ss_pred CHHHHHHHHHH
Q psy5647 626 SIEEKMMQRQA 636 (755)
Q Consensus 626 TiEEkI~~r~~ 636 (755)
||||.+++.-.
T Consensus 238 TiEh~~l~~~~ 248 (328)
T 3hgt_A 238 SIDHCRLFFGK 248 (328)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHccC
Confidence 99999988643
No 15
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=337.95 Aligned_cols=455 Identities=16% Similarity=0.152 Sum_probs=248.7
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhH-H
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNW-C 221 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW-~ 221 (755)
...|+|||.+++.++.+ +.++|++++||+|||++++.++..++..++.. ...+++|||+|. +|+.|| .
T Consensus 5 ~~~l~~~Q~~~i~~il~---------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-~~~~~vlvl~P~~~L~~Q~~~ 74 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE---------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-SEPGKVIVLVNKVLLVEQLFR 74 (699)
T ss_dssp --CCCHHHHHHHHHHHS---------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-TCCCCBCCEESCSHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHh---------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-CCCCeEEEEECCHHHHHHHHH
Confidence 34799999999999853 56899999999999999999988776554210 011458999998 688999 9
Q ss_pred HHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--------hhhcCCccEEEEeCCc
Q psy5647 222 NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--------VLHKNEVGLVLCDEGH 293 (755)
Q Consensus 222 ~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--------~l~~~~~~lvIiDEaH 293 (755)
++|.+|++..+.+..+.|+...... ...+. ...+|+|+|++.+..... .+....|++||+||||
T Consensus 75 ~~l~~~~~~~~~v~~~~g~~~~~~~--~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH 146 (699)
T 4gl2_A 75 KEFQPFLKKWYRVIGLSGDTQLKIS--FPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 146 (699)
T ss_dssp HTHHHHHTTTSCEEEEC----CCCC--HHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGG
T ss_pred HHHHHHcCcCceEEEEeCCcchhhH--HHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECcc
Confidence 9999999876667777666432211 01111 135899999999986542 2334578999999999
Q ss_pred ccCCCc--cHHH-HHHHc-c-------------ccccEEEeecCCCcCC-------HHHHHHhhhhhcCCCCC----ChH
Q psy5647 294 RLKNCE--SQTY-QALMG-L-------------KAKRRVLLSGTPIQND-------LLEYFSLVHFVNQGILG----TAQ 345 (755)
Q Consensus 294 ~lKn~~--s~~~-~al~~-l-------------~~~~rllLTGTPiqN~-------l~El~sll~fl~p~~l~----~~~ 345 (755)
++.+.. .... ..+.. + ...++++|||||..++ ..++..++..+++.... ...
T Consensus 147 ~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~ 226 (699)
T 4gl2_A 147 HTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLD 226 (699)
T ss_dssp GCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHH
T ss_pred ccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchH
Confidence 985532 1111 11111 1 4467899999999863 34455555566552221 223
Q ss_pred HHHHhccCccccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhH
Q psy5647 346 EFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD 425 (755)
Q Consensus 346 ~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~ 425 (755)
.+...+..|........... .......+..+...+..++ .+.+ ........|...+...
T Consensus 227 ~l~~~~~~p~~~~~~~~~~~--~~~~~~~l~~l~~~i~~~~----------~~~~---------~~~~g~~~~~~~~~~~ 285 (699)
T 4gl2_A 227 QLKNQIQEPCKKFAIADATR--EDPFKEKLLEIMTRIQTYC----------QMSP---------MSDFGTQPYEQWAIQM 285 (699)
T ss_dssp HHHHHSCCCEEEEEEEC-------CHHHHHHHHHHHHHHHH----------TCCC---------CSCSSSHHHHHHHHHH
T ss_pred HHhhhcCCCceEEEEccccc--CChHHHHHHHHHHHHHHHh----------ccCc---------chhccchHHHHHHHHH
Confidence 44444444332111110000 0001112222222222111 0111 0111112233222211
Q ss_pred HHHHHHcCCCcccccccHHHH----------------HHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccc---cccc
Q psy5647 426 AVRRTMKGGENTKLGMTALSS----------------ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGY---AASY 486 (755)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~----------------i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 486 (755)
..................+.. +..++........ .. ....++.......+.... ....
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (699)
T 4gl2_A 286 EKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKD--KK-FAVIEDDLKKPLKLDETDRFLMTLF 362 (699)
T ss_dssp HHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--HH-C------------CCHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh-ccccccccccccccchhHHHHHHHH
Confidence 111111111100000000110 1111111000000 00 000000000000000000 0000
Q ss_pred cc-h---hhh----HHhhhhHHHHHHHHHHH-hccC-CCEEEEEEechhHHHHHHHHHHhc------CCcEEEEcCC---
Q psy5647 487 KS-G---KLL----IELSAKLMVLDTMLAVI-KMTT-DDKIVLVSNYTQTLDLFERLSKLR------GYKYVRLDGS--- 547 (755)
Q Consensus 487 ~~-~---~~~----~~~S~Kl~~L~~lL~~~-~~~~-~~KvlIFs~~~~~ld~l~~~L~~~------g~~~~~ldG~--- 547 (755)
.. . ... ...+.|+..|..+|... ...+ +.++|||++++.+++.|.+.|... |+++..++|+
T Consensus 363 ~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~ 442 (699)
T 4gl2_A 363 FENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHS 442 (699)
T ss_dssp HHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCC
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCc
Confidence 00 0 000 00345666666666553 3334 789999999999999999999987 9999999999
Q ss_pred -----CCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEe
Q psy5647 548 -----MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFL 622 (755)
Q Consensus 548 -----~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv 622 (755)
++..+|.+++++|+++... +|++|.++|+|||++.++.||+||++|||..+.|++||++|.| ..++.+.
T Consensus 443 ~~~~~~~~~eR~~~~~~F~~g~~~--VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 443 SEFKPMTQNEQKEVISKFRTGKIN--LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp TTCCCCCHHHHHHHHHHHCC---C--CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHhcCCCc--EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999985544 6899999999999999999999999999999999999986655 3445566
Q ss_pred eCCCHHHHHHHHHHHHHHhHhhhh
Q psy5647 623 STGSIEEKMMQRQAHKKALSSCVV 646 (755)
Q Consensus 623 ~~gTiEEkI~~r~~~K~~l~~~vv 646 (755)
..++.+...+.....+..+....+
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~ 540 (699)
T 4gl2_A 517 HSGSGVIERETVNDFREKMMYKAI 540 (699)
T ss_dssp ESSSCSHHHHHHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHHHHHHHHH
Confidence 777766655555555555555544
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.3e-32 Score=317.12 Aligned_cols=358 Identities=15% Similarity=0.138 Sum_probs=213.9
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCCCCCeEEEEeCC-cchHhH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL--AKPLIDKAIIVAPS-SLVKNW 220 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~--~~p~~~~~LIV~P~-sll~nW 220 (755)
...|||||.+++.++++.+. .+..+++|+++||+|||++++.+++.++..+.. .....+++|||||. +|+.||
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~----~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVL----QGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHH----TTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CCCchHHHHHHHHHHHHHHh----cCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 45899999999999988764 345668999999999999999999998876511 11123679999995 888999
Q ss_pred H-HHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhh------hhhhcCCccEEEEeCCc
Q psy5647 221 C-NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA------SVLHKNEVGLVLCDEGH 293 (755)
Q Consensus 221 ~-~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~------~~l~~~~~~lvIiDEaH 293 (755)
. ++|.+|... ...+.++. .....+|+|+||+.+.... ..+....|++||+||||
T Consensus 252 ~~~~~~~~~~~---~~~~~~~~----------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH 312 (590)
T 3h1t_A 252 KDKTFTPFGDA---RHKIEGGK----------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH 312 (590)
T ss_dssp ---CCTTTCSS---EEECCC------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC
T ss_pred HHHHHHhcchh---hhhhhccC----------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc
Confidence 9 788877542 22222211 1134689999999997653 23444579999999999
Q ss_pred ccCCCccHH-HHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHH
Q psy5647 294 RLKNCESQT-YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372 (755)
Q Consensus 294 ~lKn~~s~~-~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~ 372 (755)
++.+..... ...+..+...++++|||||..++..+++.++. .++....
T Consensus 313 ~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~------------- 361 (590)
T 3h1t_A 313 RGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS------------- 361 (590)
T ss_dssp ---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC-------------
T ss_pred cccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC-------------
Confidence 998754333 34455567788999999999887666554432 1111100
Q ss_pred HHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHH
Q psy5647 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452 (755)
Q Consensus 373 ~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk 452 (755)
+...+ -...+++.....+.................... ..+...
T Consensus 362 -----~~~~i-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------------------ 405 (590)
T 3h1t_A 362 -----LRQGI-----------DDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFG--REIPDG------------------ 405 (590)
T ss_dssp -----HHHHH-----------HHTSSCCEEEEEEEETTCC----------------------------------------
T ss_pred -----HHHHh-----------hCCccCCcEEEEeeeeeeccccccccccccccc--cccccc------------------
Confidence 00000 012344444444444433221111110000000 000000
Q ss_pred HhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHH-HHHHHhc-cCCCEEEEEEechhHHHHH
Q psy5647 453 LCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDT-MLAVIKM-TTDDKIVLVSNYTQTLDLF 530 (755)
Q Consensus 453 ~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~-lL~~~~~-~~~~KvlIFs~~~~~ld~l 530 (755)
.+.. ..-........+...+.+ +...+.. ..+.|+||||++...++.+
T Consensus 406 ----------------------------~~~~--~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l 455 (590)
T 3h1t_A 406 ----------------------------EYQT--KDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEM 455 (590)
T ss_dssp -------------------------------C--CSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHH
T ss_pred ----------------------------cCCH--HHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHH
Confidence 0000 000001111122222222 2122221 3468999999999999999
Q ss_pred HHHHHhcCCc--------EEEEcCCCCHHHHHHHHHHHccCC-CceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHH
Q psy5647 531 ERLSKLRGYK--------YVRLDGSMTIKKRAKVVETFNKTS-NEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDD 601 (755)
Q Consensus 531 ~~~L~~~g~~--------~~~ldG~~~~~~R~~~v~~Fn~~~-~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~ 601 (755)
.+.|...+.. +..++|+++ ++|.+++++|+++. ...++|+||+++++|+|++.++.||+++++||+..+.
T Consensus 456 ~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~ 534 (590)
T 3h1t_A 456 RRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFK 534 (590)
T ss_dssp HHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHH
T ss_pred HHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHH
Confidence 9999876543 678999975 47999999999844 3567899999999999999999999999999999999
Q ss_pred HHhHhhhccCC---CCcEEEEEEe
Q psy5647 602 QAMARVWRDGQ---KKPCFVYRFL 622 (755)
Q Consensus 602 Qa~gR~~R~GQ---~k~V~Vyrlv 622 (755)
|++||++|.|+ +..+.||.++
T Consensus 535 Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 535 QIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHhhhcccCccCCCCEEEEEecC
Confidence 99999999994 6778898877
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=9.2e-30 Score=280.51 Aligned_cols=329 Identities=15% Similarity=0.128 Sum_probs=221.9
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|||.+++.++. .+.++|++++||+|||++++..+...+..... ..++|||||. .|+.||.+++
T Consensus 30 ~~~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~----~~~~lil~P~~~L~~q~~~~~ 96 (391)
T 1xti_A 30 HPSEVQHECIPQAI---------LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG----QVSVLVMCHTRELAFQISKEY 96 (391)
T ss_dssp SCCHHHHHHHHHHT---------TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTT----CCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------cCCcEEEECCCCCcHHHHHHHHHHHhhcccCC----CeeEEEECCCHHHHHHHHHHH
Confidence 59999999998874 35689999999999999988777665543221 2468999999 8889999999
Q ss_pred HHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCcc
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~s 300 (755)
.+|... .+.+..+.|+....... ..+ .. ...+|+|+|++.+...... +....+++||+||||++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-~~----~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~ 169 (391)
T 1xti_A 97 ERFSKYMPNVKVAVFFGGLSIKKDE--EVL-KK----NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 169 (391)
T ss_dssp HHHTTTCTTCCEEEECTTSCHHHHH--HHH-HH----SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHH
T ss_pred HHHHhhCCCeEEEEEeCCCCHHHHH--HHH-hc----CCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccc
Confidence 999753 45666666664332211 111 11 2357999999999765432 3345789999999999976422
Q ss_pred --HHHHHH-Hcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 301 --QTYQAL-MGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 301 --~~~~al-~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
.....+ ... ....++++||||-.+ ..++.. ..+..|........
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~-----------------~~~~~~~~~~~~~~-------------- 217 (391)
T 1xti_A 170 MRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPVCR-----------------KFMQDPMEIFVDDE-------------- 217 (391)
T ss_dssp HHHHHHHHHHTSCSSSEEEEEESSCCST-HHHHHH-----------------HHCSSCEEEECCCC--------------
T ss_pred hHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHHHH-----------------HHcCCCeEEEecCc--------------
Confidence 122222 222 356789999998432 111100 00001100000000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
....+.......+.
T Consensus 218 -----------------~~~~~~~~~~~~~~------------------------------------------------- 231 (391)
T 1xti_A 218 -----------------TKLTLHGLQQYYVK------------------------------------------------- 231 (391)
T ss_dssp -----------------CCCCCTTCEEEEEE-------------------------------------------------
T ss_pred -----------------cccCcccceEEEEE-------------------------------------------------
Confidence 00000000000000
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
.....|...+..++... .+.++|||+++...++.+.+.|..
T Consensus 232 ------------------------------------~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~ 272 (391)
T 1xti_A 232 ------------------------------------LKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE 272 (391)
T ss_dssp ------------------------------------CCGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHH
T ss_pred ------------------------------------cCchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHh
Confidence 00123444444555443 578999999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
.|+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++||+..+.|++||++|.|++..+
T Consensus 273 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 273 QNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCCS--EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCCc--EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999976554 789999999999999999999999999999999999999999987665
Q ss_pred EEEEEeeCCCHHHHHHHHHH
Q psy5647 617 FVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 617 ~Vyrlv~~gTiEEkI~~r~~ 636 (755)
.+ |++.. -++++++...
T Consensus 351 ~~--~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 351 IT--FVSDE-NDAKILNDVQ 367 (391)
T ss_dssp EE--EECSH-HHHHHHHHHH
T ss_pred EE--EEccc-chHHHHHHHH
Confidence 54 44432 2444444443
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.5e-30 Score=279.29 Aligned_cols=313 Identities=18% Similarity=0.238 Sum_probs=218.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|||.+++..+++ ++.++|+..+||+|||++++..+..++...+ ..++|||||. .|+.||.+++
T Consensus 28 ~~~~~Q~~~i~~~~~--------~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~-----~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN--------DEYNIVAQARTGSGKTASFAIPLIELVNENN-----GIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp SCCHHHHHHHHHHHH--------TCSEEEEECCSSSSHHHHHHHHHHHHSCSSS-----SCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC--------CCCCEEEECCCCChHHHHHHHHHHHHhcccC-----CCcEEEEcCCHHHHHHHHHHH
Confidence 799999999998864 3468899999999999999888776654432 2468999999 7889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc--
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
.+|++. .+.+....++...... ...+. ..+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~-------~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 95 ESLKGNKNLKIAKIYGGKAIYPQ--IKALK-------NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHCSSCCCEEEECTTSCHHHH--HHHHH-------TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHhCCCCceEEEEECCcchHHH--HhhcC-------CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 999875 4556666665432211 11111 257999999998765432 233578999999999987654
Q ss_pred cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
......+..+ ...+.+++||||-.+... ++ ...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~----~~--------------~~~~~~~~~---------------------- 205 (367)
T 1hv8_A 166 KDVEKILNACNKDKRILLFSATMPREILN----LA--------------KKYMGDYSF---------------------- 205 (367)
T ss_dssp HHHHHHHHTSCSSCEEEEECSSCCHHHHH----HH--------------HHHCCSEEE----------------------
T ss_pred HHHHHHHHhCCCCceEEEEeeccCHHHHH----HH--------------HHHcCCCeE----------------------
Confidence 2233333444 456779999999432110 00 000000000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
+....+..... .++..
T Consensus 206 ---------------~~~~~~~~~~~-~~~~~------------------------------------------------ 221 (367)
T 1hv8_A 206 ---------------IKAKINANIEQ-SYVEV------------------------------------------------ 221 (367)
T ss_dssp ---------------EECCSSSSSEE-EEEEC------------------------------------------------
T ss_pred ---------------EEecCCCCceE-EEEEe------------------------------------------------
Confidence 00000000000 00000
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g 538 (755)
....|+..+..++. ..+.++|||+++...++.+.+.|+..|
T Consensus 222 -----------------------------------~~~~~~~~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~ 262 (367)
T 1hv8_A 222 -----------------------------------NENERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRDIG 262 (367)
T ss_dssp -----------------------------------CGGGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred -----------------------------------ChHHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 01123333333332 457899999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
+.+..++|+++..+|.++++.|+++... +|++|.++++|+|++.++.||++|++||+..+.|++||++|.|+...++
T Consensus 263 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~- 339 (367)
T 1hv8_A 263 FKAGAIHGDLSQSQREKVIRLFKQKKIR--ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI- 339 (367)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHHTTSSS--EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEE-
T ss_pred CCeEEeeCCCCHHHHHHHHHHHHcCCCe--EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEE-
Confidence 9999999999999999999999976544 7789999999999999999999999999999999999999999877554
Q ss_pred EEEeeCCCH
Q psy5647 619 YRFLSTGSI 627 (755)
Q Consensus 619 yrlv~~gTi 627 (755)
.++.....
T Consensus 340 -~~~~~~~~ 347 (367)
T 1hv8_A 340 -SIINRREY 347 (367)
T ss_dssp -EEECTTSH
T ss_pred -EEEcHHHH
Confidence 45665543
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=1.8e-29 Score=279.28 Aligned_cols=316 Identities=17% Similarity=0.190 Sum_probs=216.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|||.+++.++.. +.++++..+||+|||++++..+...+..... ..++|||||. .|+.||.+++
T Consensus 43 ~~~~~Q~~~i~~i~~---------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~~ 109 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT---------GRDILARAKNGTGKTAAFVIPTLEKVKPKLN----KIQALIMVPTRELALQTSQVV 109 (400)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---------CCCEEEECCCCcHHHHHHHHHHHHHHhhccC----CccEEEEcCCHHHHHHHHHHH
Confidence 699999999998864 3579999999999999988777665543221 2358999999 7889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-c
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE-S 300 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~-s 300 (755)
.++.+. .+.+....++...... ... . ....+|+|+|++.+...... .....+++||+||||++.+.. .
T Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~~--~~~----~--~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~ 181 (400)
T 1s2m_A 110 RTLGKHCGISCMVTTGGTNLRDD--ILR----L--NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFK 181 (400)
T ss_dssp HHHTTTTTCCEEEECSSSCHHHH--HHH----T--TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHH
T ss_pred HHHhcccCceEEEEeCCcchHHH--HHH----h--cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchH
Confidence 999864 4556666665433211 111 1 13468999999998654432 233468999999999986643 1
Q ss_pred HHHHHHHc-c-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMG-L-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 301 ~~~~al~~-l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
.....+.. + .....++||||+-.+ +.++. ...+..|....
T Consensus 182 ~~~~~i~~~~~~~~~~i~lSAT~~~~-~~~~~-----------------~~~~~~~~~~~-------------------- 223 (400)
T 1s2m_A 182 TIIEQILSFLPPTHQSLLFSATFPLT-VKEFM-----------------VKHLHKPYEIN-------------------- 223 (400)
T ss_dssp HHHHHHHTTSCSSCEEEEEESCCCHH-HHHHH-----------------HHHCSSCEEES--------------------
T ss_pred HHHHHHHHhCCcCceEEEEEecCCHH-HHHHH-----------------HHHcCCCeEEE--------------------
Confidence 22222222 2 356789999996311 10000 00000000000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
.... ...+........
T Consensus 224 ----------~~~~---~~~~~~~~~~~~--------------------------------------------------- 239 (400)
T 1s2m_A 224 ----------LMEE---LTLKGITQYYAF--------------------------------------------------- 239 (400)
T ss_dssp ----------CCSS---CBCTTEEEEEEE---------------------------------------------------
T ss_pred ----------eccc---cccCCceeEEEE---------------------------------------------------
Confidence 0000 000000000000
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g 538 (755)
.....|+..+..++.. ..+.++|||+++...++.+.+.|...|
T Consensus 240 ----------------------------------~~~~~k~~~l~~~~~~---~~~~~~lVf~~~~~~~~~l~~~L~~~~ 282 (400)
T 1s2m_A 240 ----------------------------------VEERQKLHCLNTLFSK---LQINQAIIFCNSTNRVELLAKKITDLG 282 (400)
T ss_dssp ----------------------------------CCGGGHHHHHHHHHHH---SCCSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ----------------------------------echhhHHHHHHHHHhh---cCCCcEEEEEecHHHHHHHHHHHHhcC
Confidence 0112344455555544 346799999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++||+..+.|++||++|.|+... +
T Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~ 358 (400)
T 1s2m_A 283 YSCYYSHARMKQQERNKVFHEFRQGKVR--TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--A 358 (400)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--E
T ss_pred CCeEEecCCCCHHHHHHHHHHHhcCCCc--EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCce--E
Confidence 9999999999999999999999976544 78899999999999999999999999999999999999999997654 4
Q ss_pred EEEeeCC
Q psy5647 619 YRFLSTG 625 (755)
Q Consensus 619 yrlv~~g 625 (755)
|.|+..+
T Consensus 359 ~~l~~~~ 365 (400)
T 1s2m_A 359 INLINWN 365 (400)
T ss_dssp EEEECGG
T ss_pred EEEeccc
Confidence 5566665
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.7e-29 Score=280.54 Aligned_cols=319 Identities=17% Similarity=0.183 Sum_probs=218.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|||.+++.++. .++++|++.+||+|||++++..+...+.... ...++|||||. .|+.||.+++
T Consensus 59 ~~~~~Q~~ai~~i~---------~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 125 (410)
T 2j0s_A 59 KPSAIQQRAIKQII---------KGRDVIAQSQSGTGKTATFSISVLQCLDIQV----RETQALILAPTRELAVQIQKGL 125 (410)
T ss_dssp SCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHTCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------CCCCEEEECCCCCCchHHHHHHHHHHHhhcc----CCceEEEEcCcHHHHHHHHHHH
Confidence 59999999999875 3467999999999999998877766543221 12469999999 7889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc--
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
.+|... .+.+....|+...... ..... ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 126 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~------~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~ 197 (410)
T 2j0s_A 126 LALGDYMNVQCHACIGGTNVGED--IRKLD------YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFK 197 (410)
T ss_dssp HHHTTTTTCCEEEECTTSCHHHH--HHHHH------HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTH
T ss_pred HHHhccCCeEEEEEECCCCHHHH--HHHhh------cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhH
Confidence 998754 4555555565433221 11111 124799999998875543 2334568999999999987654
Q ss_pred cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
......+..+ ...+.+++||||-. ++..++... +..|+....
T Consensus 198 ~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~------------------- 240 (410)
T 2j0s_A 198 EQIYDVYRYLPPATQVVLISATLPH----EILEMTNKF--------------MTDPIRILV------------------- 240 (410)
T ss_dssp HHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGT--------------CSSCEEECC-------------------
T ss_pred HHHHHHHHhCccCceEEEEEcCCCH----HHHHHHHHH--------------cCCCEEEEe-------------------
Confidence 2233333334 45678999999832 111111100 011110000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
... ...++......+.+.-
T Consensus 241 -----------~~~--~~~~~~~~~~~~~~~~------------------------------------------------ 259 (410)
T 2j0s_A 241 -----------KRD--ELTLEGIKQFFVAVER------------------------------------------------ 259 (410)
T ss_dssp -----------CGG--GCSCTTEEEEEEEESS------------------------------------------------
T ss_pred -----------cCc--cccCCCceEEEEEeCc------------------------------------------------
Confidence 000 0001111111111110
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g 538 (755)
...|+..|..++... ...++|||+++...++.+.+.|...|
T Consensus 260 ------------------------------------~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (410)
T 2j0s_A 260 ------------------------------------EEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREAN 300 (410)
T ss_dssp ------------------------------------TTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred ------------------------------------HHhHHHHHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCC
Confidence 012333444444443 35699999999999999999999999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++|++..+.|++||++|.|++.. +
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~--~ 376 (410)
T 2j0s_A 301 FTVSSMHGDMPQKERESIMKEFRSGASR--VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--A 376 (410)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHHTSSC--EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--E
T ss_pred CceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE--E
Confidence 9999999999999999999999986544 77899999999999999999999999999999999999999997654 4
Q ss_pred EEEeeCCC
Q psy5647 619 YRFLSTGS 626 (755)
Q Consensus 619 yrlv~~gT 626 (755)
|.|++...
T Consensus 377 ~~~~~~~~ 384 (410)
T 2j0s_A 377 INFVKNDD 384 (410)
T ss_dssp EEEEEGGG
T ss_pred EEEecHHH
Confidence 45666543
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.7e-29 Score=272.32 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=209.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|||.+++.++. .++++++..+||+|||++++..+... + .++|||+|. .|+.||.++
T Consensus 15 ~~l~~~Q~~~i~~i~---------~~~~~lv~~~TGsGKT~~~~~~~~~~---~-------~~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 15 KNFTEVQSKTIPLML---------QGKNVVVRAKTGSGKTAAYAIPILEL---G-------MKSLVVTPTRELTRQVASH 75 (337)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHH---T-------CCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------cCCCEEEEcCCCCcHHHHHHHHHHhh---c-------CCEEEEeCCHHHHHHHHHH
Confidence 368999999999874 34689999999999999887766442 2 358999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.+|... ...+..+.++...... ...+ ...+|+|+|++.+..... .+....|++||+||||++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 146 (337)
T 2z0m_A 76 IRDIGRYMDTKVAEVYGGMPYKAQ--INRV-------RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGF 146 (337)
T ss_dssp HHHHTTTSCCCEEEECTTSCHHHH--HHHH-------TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTC
T ss_pred HHHHhhhcCCcEEEEECCcchHHH--Hhhc-------CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcccc
Confidence 9999764 4555566665433211 1111 125799999999876543 2223468999999999986543
Q ss_pred -cHHHHHHHcccc-ccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGLKA-KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l~~-~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+.. ...+++||||-... ...+. ..+..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~----~~~~~--------------~~~~~~~~--------------------- 187 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEI----RKVVK--------------DFITNYEE--------------------- 187 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHH----HHHHH--------------HHSCSCEE---------------------
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHH----HHHHH--------------HhcCCcee---------------------
Confidence 223333344443 44567899983211 00000 00000000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
+.. . ...+......+.+ ...
T Consensus 188 ---------~~~---~--~~~~~~~~~~~~~--~~~-------------------------------------------- 207 (337)
T 2z0m_A 188 ---------IEA---C--IGLANVEHKFVHV--KDD-------------------------------------------- 207 (337)
T ss_dssp ---------EEC---S--GGGGGEEEEEEEC--SSS--------------------------------------------
T ss_pred ---------eec---c--cccCCceEEEEEe--ChH--------------------------------------------
Confidence 000 0 0000000000000 000
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
+ .. .+..+....+.++|||+++...++.+.+.|.
T Consensus 208 ------------------------~-------------~~-------~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-- 241 (337)
T 2z0m_A 208 ------------------------W-------------RS-------KVQALRENKDKGVIVFVRTRNRVAKLVRLFD-- 241 (337)
T ss_dssp ------------------------S-------------HH-------HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--
T ss_pred ------------------------H-------------HH-------HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--
Confidence 0 00 0111223457899999999999999888776
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
.+..++|+++..+|.++++.|+++... +|++|.++++|+|++.++.||+||++|++..+.|++||++|.|+...|.
T Consensus 242 --~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~ 317 (337)
T 2z0m_A 242 --NAIELRGDLPQSVRNRNIDAFREGEYD--MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAI 317 (337)
T ss_dssp --TEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEE
T ss_pred --hhhhhcCCCCHHHHHHHHHHHHcCCCc--EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEE
Confidence 578999999999999999999986544 7889999999999999999999999999999999999999999988888
Q ss_pred EEEEeeCCCHHHHHHHHH
Q psy5647 618 VYRFLSTGSIEEKMMQRQ 635 (755)
Q Consensus 618 Vyrlv~~gTiEEkI~~r~ 635 (755)
+|.. ....+.++|.+..
T Consensus 318 ~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 318 TFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEES-SCHHHHHHHC---
T ss_pred EEEe-CcHHHHHHHHHHh
Confidence 7765 5555666665444
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=278.94 Aligned_cols=320 Identities=17% Similarity=0.196 Sum_probs=205.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++.+|+..+||+|||++++..+...+..... ..++|||+|. .|+.||.++
T Consensus 61 ~~~~~~Q~~~i~~~~---------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~ 127 (414)
T 3eiq_A 61 EKPSAIQQRAILPCI---------KGYDVIAQAQSGTGKTATFAISILQQIELDLK----ATQALVLAPTRELAQQIQKV 127 (414)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHh---------CCCCEEEECCCCCcccHHHHHHHHHHHhhcCC----ceeEEEEeChHHHHHHHHHH
Confidence 368999999998875 34579999999999999988777665543221 2458999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.++... ...+....++..... ...... ....+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~ 200 (414)
T 3eiq_A 128 VMALGDYMGASCHACIGGTNVRA--EVQKLQ-----MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGF 200 (414)
T ss_dssp HHHHGGGSCCCEEECCCCTTHHH--HHHHHT-----TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTT
T ss_pred HHHHhcccCceEEEEECCcchHH--HHHHHh-----cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCc
Confidence 9998753 344555555433221 111111 13468999999998765432 334568999999999986543
Q ss_pred -cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+ ...+.++|||||-.+ ...++.. .+..|+
T Consensus 201 ~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~~~--------------~~~~~~---------------------- 240 (414)
T 3eiq_A 201 KDQIYDIFQKLNSNTQVVLLSATMPSD----VLEVTKK--------------FMRDPI---------------------- 240 (414)
T ss_dssp HHHHHHHHTTSCTTCEEEEECSCCCHH----HHHHHTT--------------TCSSCE----------------------
T ss_pred HHHHHHHHHhCCCCCeEEEEEEecCHH----HHHHHHH--------------HcCCCE----------------------
Confidence 3444445555 456679999998321 1111000 000000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
. +.+... ... . +
T Consensus 241 -------------------------~--~~~~~~----------------------~~~--~-----------------~ 252 (414)
T 3eiq_A 241 -------------------------R--ILVKKE----------------------ELT--L-----------------E 252 (414)
T ss_dssp -------------------------E--ECCCCC----------------------CCC--T-----------------T
T ss_pred -------------------------E--EEecCC----------------------ccC--C-----------------C
Confidence 0 000000 000 0 0
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
. +...+.. ......|+..+..++.. ..+.++|||++....++.+.+.|...
T Consensus 253 ~-------------------~~~~~~~-------~~~~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 253 G-------------------IRQFYIN-------VEREEWKLDTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHAR 303 (414)
T ss_dssp S-------------------CCEEEEE-------CSSSTTHHHHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTT
T ss_pred C-------------------ceEEEEE-------eChHHhHHHHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 0 0000000 00011244455555443 45679999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
|+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++||+..+.|++||++|.|+...+
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~- 380 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGSSR--VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA- 380 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE-
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCc--EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE-
Confidence 99999999999999999999999875543 689999999999999999999999999999999999999999987644
Q ss_pred EEEEeeCC
Q psy5647 618 VYRFLSTG 625 (755)
Q Consensus 618 Vyrlv~~g 625 (755)
|.|++..
T Consensus 381 -~~~~~~~ 387 (414)
T 3eiq_A 381 -INMVTEE 387 (414)
T ss_dssp -EEEECST
T ss_pred -EEEEcHH
Confidence 4566665
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=1.5e-28 Score=270.76 Aligned_cols=312 Identities=15% Similarity=0.189 Sum_probs=210.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..++. ..+.++|+..+||+|||++++..+...+..... ..++|||||. .|+.||.++
T Consensus 26 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 26 QKPSKIQERALPLLLH-------NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA----SPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp CSCCHHHHHHHHHHHC-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCC----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCC----CccEEEECCCHHHHHHHHHH
Confidence 3789999999998853 234789999999999999988877665443221 2468999999 688999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.++... .+......++.... ......+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~ 162 (395)
T 3pey_A 95 VQEMGKFTKITSQLIVPDSFEK------------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQG 162 (395)
T ss_dssp HHHHTTTSCCCEEEESTTSSCT------------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTT
T ss_pred HHHHhcccCeeEEEEecCchhh------------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccc
Confidence 9998753 34444444432111 011246899999999876542 2233478999999999986532
Q ss_pred -cHHHHHHHc-c-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMG-L-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 300 -s~~~~al~~-l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
......+.. + ...+.+++||||-. .+.++ ...+ +..+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~SAT~~~-~~~~~---~~~~--------------~~~~~~~------------------- 205 (395)
T 3pey_A 163 LGDQCIRVKRFLPKDTQLVLFSATFAD-AVRQY---AKKI--------------VPNANTL------------------- 205 (395)
T ss_dssp HHHHHHHHHHTSCTTCEEEEEESCCCH-HHHHH---HHHH--------------SCSCEEE-------------------
T ss_pred cHHHHHHHHHhCCCCcEEEEEEecCCH-HHHHH---HHHh--------------CCCCeEE-------------------
Confidence 222223333 2 34678999999832 11111 1100 0000000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
... ....+.......+....
T Consensus 206 -----------~~~----~~~~~~~~~~~~~~~~~--------------------------------------------- 225 (395)
T 3pey_A 206 -----------ELQ----TNEVNVDAIKQLYMDCK--------------------------------------------- 225 (395)
T ss_dssp -----------CCC----GGGCSCTTEEEEEEECS---------------------------------------------
T ss_pred -----------Ecc----ccccccccccEEEEEcC---------------------------------------------
Confidence 000 00000000001110000
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
....|...+..++.. ..+.++|||++....++.+.+.|+.
T Consensus 226 -------------------------------------~~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~ 265 (395)
T 3pey_A 226 -------------------------------------NEADKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKS 265 (395)
T ss_dssp -------------------------------------SHHHHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHH
T ss_pred -------------------------------------chHHHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHh
Confidence 012233333333332 2467999999999999999999999
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC------CCCcHHHHhHhhhcc
Q psy5647 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW------NPANDDQAMARVWRD 610 (755)
Q Consensus 537 ~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W------Np~~~~Qa~gR~~R~ 610 (755)
.|+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++| |+..+.|++||++|.
T Consensus 266 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 266 EGHEVSILHGDLQTQERDRLIDDFREGRSK--VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHHTTSCC--EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHHCCCCC--EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccC
Confidence 999999999999999999999999986544 789999999999999999999999999 999999999999999
Q ss_pred CCCCcEEE
Q psy5647 611 GQKKPCFV 618 (755)
Q Consensus 611 GQ~k~V~V 618 (755)
|++..+.+
T Consensus 344 g~~g~~~~ 351 (395)
T 3pey_A 344 GRKGVAIS 351 (395)
T ss_dssp TCCEEEEE
T ss_pred CCCceEEE
Confidence 98665543
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=2.2e-29 Score=277.65 Aligned_cols=318 Identities=16% Similarity=0.191 Sum_probs=111.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|||.+++.+++. ++.+++..+||+|||++++..+...+.... ...++|||||. .|+.||.++
T Consensus 42 ~~~~~~Q~~~i~~i~~---------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~----~~~~~lil~P~~~L~~q~~~~ 108 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE---------GHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKV 108 (394)
T ss_dssp CSCCHHHHHHHHHHHH---------TCCEEECCCSSHHHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHhhccC----CCCCEEEEcCCHHHHHHHHHH
Confidence 4799999999999864 357899999999999997766655443322 12469999999 888999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.++... .+.+..+.|+....... ..+. ..+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~-------~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~ 179 (394)
T 1fuu_A 109 VMALAFHMDIKVHACIGGTSFVEDA--EGLR-------DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 179 (394)
T ss_dssp HHHHTTTSCCCEEEECSSCCHHHHH--HHHH-------HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHhccCCeeEEEEeCCCchHHHH--hhcC-------CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCc
Confidence 9999864 45666666654332211 1111 14799999999876543 2334578999999999985432
Q ss_pred -cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+ ...+++++||||-.. +.++ + ...+..|.
T Consensus 180 ~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~--------------~~~~~~~~---------------------- 219 (394)
T 1fuu_A 180 KEQIYQIFTLLPPTTQVVLLSATMPND-VLEV---T--------------TKFMRNPV---------------------- 219 (394)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSCCHH-HHHH---H--------------HHHCCSCE----------------------
T ss_pred HHHHHHHHHhCCCCceEEEEEEecCHH-HHHH---H--------------HHhcCCCe----------------------
Confidence 3333344444 456789999998321 1110 0 00000000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
.+.+....... ..+ ..... .
T Consensus 220 ---------------------------~~~~~~~~~~~---~~~------~~~~~--------------------~---- 239 (394)
T 1fuu_A 220 ---------------------------RILVKKDELTL---EGI------KQFYV--------------------N---- 239 (394)
T ss_dssp ---------------------------EEEECC-----------------------------------------------
T ss_pred ---------------------------EEEecCccccC---CCc------eEEEE--------------------E----
Confidence 00000000000 000 00000 0
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
......|...+..++... .+.++|||+++...++.+.+.|+..
T Consensus 240 ----------------------------------~~~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 240 ----------------------------------VEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRND 282 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------cCchhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHc
Confidence 000011222333333332 3579999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEE
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~ 617 (755)
|+.+..++|+++..+|.++++.|+++.. .+|++|.++++|+|+++++.||++|++|++..+.|++||++|.|++..|.
T Consensus 283 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 360 (394)
T 1fuu_A 283 KFTVSAIYSDLPQQERDTIMKEFRSGSS--RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAI 360 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEeeCCCCHHHHHHHHHHHHCCCC--cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEE
Confidence 9999999999999999999999987544 37899999999999999999999999999999999999999999876554
Q ss_pred EEEEeeCC
Q psy5647 618 VYRFLSTG 625 (755)
Q Consensus 618 Vyrlv~~g 625 (755)
+ |++..
T Consensus 361 ~--~~~~~ 366 (394)
T 1fuu_A 361 N--FVTNE 366 (394)
T ss_dssp --------
T ss_pred E--EEchh
Confidence 4 45444
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=9.3e-28 Score=268.93 Aligned_cols=319 Identities=13% Similarity=0.191 Sum_probs=214.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHH-HHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL-LRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l-~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
..++|+|.+++..+. .++.+|+..+||+|||+..+..+... +...........++|||+|+ .|..||.+
T Consensus 77 ~~pt~iQ~~ai~~i~---------~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~ 147 (434)
T 2db3_A 77 KIPTPIQKCSIPVIS---------SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFN 147 (434)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHH
Confidence 368999999999874 45789999999999999877655544 44332111223469999999 78899999
Q ss_pred HHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 223 EITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 223 E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
++.++... .+.+..+.|+....... ... ....+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 148 ~~~~~~~~~~~~~~~~~gg~~~~~~~--~~l------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~g 219 (434)
T 2db3_A 148 EARKFAFESYLKIGIVYGGTSFRHQN--ECI------TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG 219 (434)
T ss_dssp HHHHHTTTSSCCCCEECTTSCHHHHH--HHH------TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHhccCCcEEEEEECCCCHHHHH--HHh------hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccC
Confidence 99999864 34555556654332111 111 1246899999999976543 2233568999999999987653
Q ss_pred --cHHHHHHHcc---ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhc-cCccccCCCCCCCHHHHHHHHH
Q psy5647 300 --SQTYQALMGL---KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY-ETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 300 --s~~~~al~~l---~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f-~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
....+.+..+ .....+++|||+-. ++..+.. .| .+|+..
T Consensus 220 f~~~~~~i~~~~~~~~~~q~l~~SAT~~~----~~~~~~~---------------~~l~~~~~i---------------- 264 (434)
T 2db3_A 220 FSEDMRRIMTHVTMRPEHQTLMFSATFPE----EIQRMAG---------------EFLKNYVFV---------------- 264 (434)
T ss_dssp THHHHHHHHHCTTSCSSCEEEEEESCCCH----HHHHHHH---------------TTCSSCEEE----------------
T ss_pred cHHHHHHHHHhcCCCCCceEEEEeccCCH----HHHHHHH---------------HhccCCEEE----------------
Confidence 2333333333 34678999999721 1111110 00 000000
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
.- .......+.....++.+
T Consensus 265 --------------~~--~~~~~~~~~i~~~~~~~--------------------------------------------- 283 (434)
T 2db3_A 265 --------------AI--GIVGGACSDVKQTIYEV--------------------------------------------- 283 (434)
T ss_dssp --------------EE--SSTTCCCTTEEEEEEEC---------------------------------------------
T ss_pred --------------Ee--ccccccccccceEEEEe---------------------------------------------
Confidence 00 00000000000000000
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
....|...|..++.. . +.++|||++.....+.+.+.
T Consensus 284 ----------------------------------------~~~~k~~~l~~~l~~---~-~~~~lVF~~t~~~a~~l~~~ 319 (434)
T 2db3_A 284 ----------------------------------------NKYAKRSKLIEILSE---Q-ADGTIVFVETKRGADFLASF 319 (434)
T ss_dssp ----------------------------------------CGGGHHHHHHHHHHH---C-CTTEEEECSSHHHHHHHHHH
T ss_pred ----------------------------------------CcHHHHHHHHHHHHh---C-CCCEEEEEeCcHHHHHHHHH
Confidence 012233344444443 2 34599999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
|...|+.+..++|+++..+|.++++.|+++... +|++|.++++|||+++++.||+||++|++..+.|++||++|.|++
T Consensus 320 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~ 397 (434)
T 2db3_A 320 LSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK--VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN 397 (434)
T ss_dssp HHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS--EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCC
T ss_pred HHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 999999999999999999999999999986554 789999999999999999999999999999999999999999986
Q ss_pred CcEEEEEEeeC
Q psy5647 614 KPCFVYRFLST 624 (755)
Q Consensus 614 k~V~Vyrlv~~ 624 (755)
..+ +.|+..
T Consensus 398 G~a--~~~~~~ 406 (434)
T 2db3_A 398 GRA--TSFFDP 406 (434)
T ss_dssp EEE--EEEECT
T ss_pred CEE--EEEEec
Confidence 554 445553
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=262.60 Aligned_cols=322 Identities=15% Similarity=0.224 Sum_probs=213.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHH-HHHHcCCC-------------CCCCCCeEEE
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMW-TLLRQGPL-------------AKPLIDKAII 210 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~-~l~~~~~~-------------~~p~~~~~LI 210 (755)
..++|+|.+++..+. .++.+|+..+||+|||+.++..+. .+...++. ......++||
T Consensus 36 ~~~~~~Q~~~i~~i~---------~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK---------EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred CCCCHHHHHHHHHHc---------cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 478999999998763 456899999999999997665544 44333211 1111245899
Q ss_pred EeCC-cchHhHHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccE
Q psy5647 211 VAPS-SLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGL 286 (755)
Q Consensus 211 V~P~-sll~nW~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~l 286 (755)
|+|. .|+.||.+++.++... .+.+..+.|+...... .... ....+|+|+|++.+...... +....+++
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 178 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ--IRDL------ERGCHLLVATPGRLVDMMERGKIGLDFCKY 178 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH--HHHH------TTCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred ECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH--HHHh------hCCCCEEEEChHHHHHHHHcCCcChhhCcE
Confidence 9999 8889999999999764 4566666666433211 1111 12358999999999765432 33346899
Q ss_pred EEEeCCcccCCCc-cHHHHHHHc---cc---cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCC
Q psy5647 287 VLCDEGHRLKNCE-SQTYQALMG---LK---AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359 (755)
Q Consensus 287 vIiDEaH~lKn~~-s~~~~al~~---l~---~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~ 359 (755)
||+||||++.... ......+.. +. ....+++||||-.+ +.++ +.. .+..|+...
T Consensus 179 iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~~~--------------~~~~~~~~~- 239 (417)
T 2i4i_A 179 LVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE-IQML---ARD--------------FLDEYIFLA- 239 (417)
T ss_dssp EEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH-HHHH---HHH--------------HCSSCEEEE-
T ss_pred EEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH-HHHH---HHH--------------HcCCCEEEE-
Confidence 9999999986543 223333332 11 35679999998321 1111 100 000000000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCce-EEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCccc
Q psy5647 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKT-EQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTK 438 (755)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~-e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~ 438 (755)
.. ... ..++.. ..++.+.
T Consensus 240 ------------------------------~~-~~~-~~~~~i~~~~~~~~----------------------------- 258 (417)
T 2i4i_A 240 ------------------------------VG-RVG-STSENITQKVVWVE----------------------------- 258 (417)
T ss_dssp ------------------------------EC------CCSSEEEEEEECC-----------------------------
T ss_pred ------------------------------eC-CCC-CCccCceEEEEEec-----------------------------
Confidence 00 000 000111 1111110
Q ss_pred ccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEE
Q psy5647 439 LGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIV 518 (755)
Q Consensus 439 ~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~Kvl 518 (755)
...|...+..++... ..+.++|
T Consensus 259 --------------------------------------------------------~~~~~~~l~~~l~~~--~~~~~~l 280 (417)
T 2i4i_A 259 --------------------------------------------------------ESDKRSFLLDLLNAT--GKDSLTL 280 (417)
T ss_dssp --------------------------------------------------------GGGHHHHHHHHHHTC--CTTCEEE
T ss_pred --------------------------------------------------------cHhHHHHHHHHHHhc--CCCCeEE
Confidence 122333444444432 2468999
Q ss_pred EEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCC
Q psy5647 519 LVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598 (755)
Q Consensus 519 IFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~ 598 (755)
||++.....+.+.+.|...|+.+..++|+++.++|.++++.|+++... +|++|.++++|+|++.++.||+||++|++.
T Consensus 281 Vf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~ 358 (417)
T 2i4i_A 281 VFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATAVAARGLDISNVKHVINFDLPSDIE 358 (417)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC--EEEECHHHHTTSCCCCEEEEEESSCCSSHH
T ss_pred EEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcCCCcccCCEEEEEcCCCCHH
Confidence 999999999999999999999999999999999999999999976544 789999999999999999999999999999
Q ss_pred cHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 599 NDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 599 ~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
.+.|++||++|.|+.. .+|.|+...
T Consensus 359 ~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 359 EYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp HHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred HHHHhcCccccCCCCc--eEEEEEccc
Confidence 9999999999999764 445556543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=1.6e-26 Score=256.18 Aligned_cols=330 Identities=15% Similarity=0.186 Sum_probs=216.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+.. ..+..+|+..+||+|||++++..+...+..+.. ..++|||+|. .|+.||.+.
T Consensus 46 ~~~~~~Q~~~i~~~~~-------~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~----~~~~lil~P~~~L~~q~~~~ 114 (412)
T 3fht_A 46 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKV 114 (412)
T ss_dssp CSCCHHHHHHHHHHHS-------SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC----CCCEEEECCCHHHHHHHHHH
Confidence 3789999999988753 234789999999999999987766554433321 2368999999 678899999
Q ss_pred HHHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh---hhhcCCccEEEEeCCcccCCC
Q psy5647 224 ITKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS---VLHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 224 ~~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~---~l~~~~~~lvIiDEaH~lKn~ 298 (755)
+.++... ...+....++.... .......+|+|+|++.+..... .+....+++||+||||++-..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~ 183 (412)
T 3fht_A 115 IEQMGKFYPELKLAYAVRGNKLE-----------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 183 (412)
T ss_dssp HHHHTTTSTTCCEEEECTTCCCC-----------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHST
T ss_pred HHHHHhhcccceEEEeecCcchh-----------hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhc
Confidence 9888652 23444343332211 0112345899999999976542 222346899999999988542
Q ss_pred --ccHHHHHHH-cc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 299 --ESQTYQALM-GL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 299 --~s~~~~al~-~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
.......+. .+ .....+++||||-. +++.+.... +..|....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~---------------- 229 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIK---------------- 229 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEEC----------------
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEe----------------
Confidence 222333333 33 34568999999842 111111100 00000000
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
.... ....+......+.+.
T Consensus 230 --------------~~~~--~~~~~~~~~~~~~~~--------------------------------------------- 248 (412)
T 3fht_A 230 --------------LKRE--EETLDTIKQYYVLCS--------------------------------------------- 248 (412)
T ss_dssp --------------CCGG--GSSCTTEEEEEEECS---------------------------------------------
T ss_pred --------------eccc--cccccCceEEEEEcC---------------------------------------------
Confidence 0000 000000001111000
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
....|+..+..++... .+.++|||++.....+.+...|
T Consensus 249 ---------------------------------------~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L 286 (412)
T 3fht_A 249 ---------------------------------------SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAEL 286 (412)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHH
T ss_pred ---------------------------------------ChHHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHH
Confidence 0123444444444443 3679999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCC------CcHHHHhHhhh
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP------ANDDQAMARVW 608 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp------~~~~Qa~gR~~ 608 (755)
...|+.+..++|+++..+|.++++.|+++... +|++|.++++|+|+++++.||+||++|++ ..+.|++||++
T Consensus 287 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 364 (412)
T ss_dssp HHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS--EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSS
T ss_pred HhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc--EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCccc
Confidence 99999999999999999999999999986554 78999999999999999999999999988 48999999999
Q ss_pred ccCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q psy5647 609 RDGQKKPCFVYRFLSTGSIEEKMMQRQAHK 638 (755)
Q Consensus 609 R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~~K 638 (755)
|.|+...+ |.|+.. .-|...+.+...+
T Consensus 365 R~g~~g~~--~~~~~~-~~~~~~~~~i~~~ 391 (412)
T 3fht_A 365 RFGKRGLA--VNMVDS-KHSMNILNRIQEH 391 (412)
T ss_dssp CTTCCEEE--EEEECS-HHHHHHHHHHHHH
T ss_pred CCCCCceE--EEEEcC-hhhHHHHHHHHHH
Confidence 99976544 344433 3344555544433
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=1e-25 Score=261.66 Aligned_cols=333 Identities=17% Similarity=0.224 Sum_probs=215.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..++. ..+..+|+..+||+|||+.++..+...+..+....+...++|||+|. .|+.||.++
T Consensus 42 ~~~~~~Q~~~i~~il~-------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp SSCCHHHHHHHHHHHC-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHH
Confidence 3699999999988752 24678999999999999998877766665544322223468999999 888999999
Q ss_pred HHHHhC-----CCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCccc
Q psy5647 224 ITKWLG-----GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 224 ~~kw~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~l 295 (755)
+.+++. ....+..+.++.... ..+..+... ..+|+|+|++.+...... .....+++||+||||++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~gg~~~~--~~~~~l~~~-----~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 115 VKKIHDMNYGLKKYACVSLVGGTDFR--AAMNKMNKL-----RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHH--HHHHHHHHH-----CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHhhcccccceEEEEEECCccHH--HHHHHHhcC-----CCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 999863 124455555554322 112222111 257999999999765433 23346899999999998
Q ss_pred CCCc-cHHHHHH-Hcc---c-----cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCH
Q psy5647 296 KNCE-SQTYQAL-MGL---K-----AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365 (755)
Q Consensus 296 Kn~~-s~~~~al-~~l---~-----~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~ 365 (755)
.... ......+ ..+ . ....+++|||+-. .+.++ +..+ +. .|..
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~----l~----------~~~~--------- 240 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNI----MN----------KKEC--------- 240 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTT----CC----------SSEE---------
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHH---HHHH----cC----------CCce---------
Confidence 7543 1222222 222 1 3468999999732 11111 1000 00 0000
Q ss_pred HHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEE-EEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHH
Q psy5647 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ-VVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTAL 444 (755)
Q Consensus 366 ~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~-vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l 444 (755)
..+.... ............ .+.+.-
T Consensus 241 -------------------~~~~~~~-~~~~~~~~~i~~~~~~~~~---------------------------------- 266 (579)
T 3sqw_A 241 -------------------LFLDTVD-KNEPEAHERIDQSVVISEK---------------------------------- 266 (579)
T ss_dssp -------------------EEEESSC-SSSCSSCTTEEEEEEEESS----------------------------------
T ss_pred -------------------EEEeecC-ccccccccccceEEEEecc----------------------------------
Confidence 0000000 000000000000 010000
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhc-cCCCEEEEEEec
Q psy5647 445 SSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM-TTDDKIVLVSNY 523 (755)
Q Consensus 445 ~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~-~~~~KvlIFs~~ 523 (755)
....+...+..++..+.. ..+.++|||++.
T Consensus 267 -------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t 297 (579)
T 3sqw_A 267 -------------------------------------------------FANSIFAAVEHIKKQIKERDSNYKAIIFAPT 297 (579)
T ss_dssp -------------------------------------------------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSS
T ss_pred -------------------------------------------------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCc
Confidence 001112222333333332 347899999999
Q ss_pred hhHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcH
Q psy5647 524 TQTLDLFERLSKLR---GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600 (755)
Q Consensus 524 ~~~ld~l~~~L~~~---g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~ 600 (755)
....+.+...|... |+.+..++|+++..+|.++++.|.++... +|++|.++++|||+++++.||+||+++++..+
T Consensus 298 ~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~--vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y 375 (579)
T 3sqw_A 298 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEVLQIGVPSELANY 375 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEEEEESCCSSTTHH
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe--EEEEcchhhcCCCcccCCEEEEcCCCCCHHHh
Confidence 99999999999887 99999999999999999999999985543 78999999999999999999999999999999
Q ss_pred HHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 601 DQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 601 ~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
.|++||++|.|+...+.+ |++..
T Consensus 376 ~Qr~GRagR~g~~g~~i~--~~~~~ 398 (579)
T 3sqw_A 376 IHRIGRTARSGKEGSSVL--FICKD 398 (579)
T ss_dssp HHHHTTSSCTTCCEEEEE--EEEGG
T ss_pred hhhccccccCCCCceEEE--EEccc
Confidence 999999999997654444 45543
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=4.1e-26 Score=261.02 Aligned_cols=304 Identities=18% Similarity=0.176 Sum_probs=211.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.+++..+. .++.+++..++|+|||+.+...+. ... +.+|||+|. +|+.+|.++
T Consensus 24 ~~~r~~Q~~~i~~il---------~g~d~lv~apTGsGKTl~~~lp~l--~~~--------g~~lvi~P~~aL~~q~~~~ 84 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVL---------SGRDCLVVMPTGGGKSLCYQIPAL--LLN--------GLTVVVSPLISLMKDQVDQ 84 (523)
T ss_dssp SSCCTTHHHHHHHHH---------TTCCEEEECSCHHHHHHHHHHHHH--HSS--------SEEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEECCCCcHHHHHHHHHHH--HhC--------CCEEEECChHHHHHHHHHH
Confidence 378999999999875 346799999999999987654432 221 358999999 888999999
Q ss_pred HHHHhCCCceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhh--hhhhhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSH--ASVLHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~--~~~l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.++. +.+..+.++.. .+.......... ...+++++|++.+... ...+....+++||+||||.+....
T Consensus 85 l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~-----~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~ 156 (523)
T 1oyw_A 85 LQANG---VAAACLNSTQTREQQLEVMTGCRT-----GQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGH 156 (523)
T ss_dssp HHHTT---CCEEEECTTSCHHHHHHHHHHHHH-----TCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSS
T ss_pred HHHcC---CcEEEEeCCCCHHHHHHHHHHHhc-----CCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCC
Confidence 98862 34445555433 222222222221 2358999999998643 344555789999999999986532
Q ss_pred --cHHHHHH----HccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHH
Q psy5647 300 --SQTYQAL----MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373 (755)
Q Consensus 300 --s~~~~al----~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~ 373 (755)
...+..+ ..+....+++|||||..+...++...+.+-.|..+ .. +
T Consensus 157 ~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~----------~~----~--------------- 207 (523)
T 1oyw_A 157 DFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ----------IS----S--------------- 207 (523)
T ss_dssp CCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE----------EC----C---------------
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE----------eC----C---------------
Confidence 2223333 33356778999999976544554443332111000 00 0
Q ss_pred HHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHH
Q psy5647 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKL 453 (755)
Q Consensus 374 ~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~ 453 (755)
..-|. ..+.+. ..
T Consensus 208 ----------------------~~r~~-l~~~v~-~~------------------------------------------- 220 (523)
T 1oyw_A 208 ----------------------FDRPN-IRYMLM-EK------------------------------------------- 220 (523)
T ss_dssp ----------------------CCCTT-EEEEEE-EC-------------------------------------------
T ss_pred ----------------------CCCCc-eEEEEE-eC-------------------------------------------
Confidence 00000 000000 00
Q ss_pred hCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHH
Q psy5647 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533 (755)
Q Consensus 454 ~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~ 533 (755)
..++..+..++ ....+.++|||+++....+.+...
T Consensus 221 ------------------------------------------~~~~~~l~~~l---~~~~~~~~IVf~~sr~~~e~l~~~ 255 (523)
T 1oyw_A 221 ------------------------------------------FKPLDQLMRYV---QEQRGKSGIIYCNSRAKVEDTAAR 255 (523)
T ss_dssp ------------------------------------------SSHHHHHHHHH---HHTTTCCEEEECSSHHHHHHHHHH
T ss_pred ------------------------------------------CCHHHHHHHHH---HhcCCCcEEEEeCCHHHHHHHHHH
Confidence 01111122222 223578999999999999999999
Q ss_pred HHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCC
Q psy5647 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 534 L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
|...|+.+..++|+++.++|.++.+.|.++... +|++|.+.|.|||++.++.||+||+|+|+..+.|++||++|.|+.
T Consensus 256 L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~--vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 256 LQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ--IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred HHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 999999999999999999999999999986644 678999999999999999999999999999999999999999987
Q ss_pred CcEEE
Q psy5647 614 KPCFV 618 (755)
Q Consensus 614 k~V~V 618 (755)
..+.+
T Consensus 334 ~~~~l 338 (523)
T 1oyw_A 334 AEAML 338 (523)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 66554
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=1.4e-25 Score=249.70 Aligned_cols=320 Identities=18% Similarity=0.140 Sum_probs=216.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...++|+|.+++..+. .+..+|+..++|+|||+.++..+......+ .++|||+|. .|+.||.+
T Consensus 19 ~~~~~~~Q~~~i~~i~---------~~~~~lv~apTGsGKT~~~l~~~~~~~~~~-------~~~lil~Pt~~L~~q~~~ 82 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIV---------QGKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLE 82 (414)
T ss_dssp SSCCCHHHHHHHHHHT---------TTCCEECCSCSSSSHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---------cCCCEEEEeCCCCCHHHHHHHHHHHHhcCC-------CEEEEEECCHHHHHHHHH
Confidence 3468899999998873 356899999999999996666655554222 358999999 88899999
Q ss_pred HHHHHhCCCceEEEecCCCHHHH-HHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCC----
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEI-DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN---- 297 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn---- 297 (755)
++.+|.+..+.+..+.|+..... ...+..... ...+|+|+|++.+......+....+++||+||||++..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~-----~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 83 RLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-----DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH-----TCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHccCCceEEEEECCCChhhHHHHHHHhhc-----CCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccch
Confidence 99998764466777777654322 222222221 12589999999998777766667899999999998632
Q ss_pred ---------CccH-HHHHHHcc------------ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCcc
Q psy5647 298 ---------CESQ-TYQALMGL------------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355 (755)
Q Consensus 298 ---------~~s~-~~~al~~l------------~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi 355 (755)
.... ....+..+ .....+++||||....+.+.+ ...+.. +
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~-----------------~~~~~~-~ 219 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL-----------------FRDLLN-F 219 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH-----------------HHHHHS-C
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH-----------------HHHhhc-c
Confidence 2222 22333332 445779999997665432111 000000 0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCC
Q psy5647 356 LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGE 435 (755)
Q Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~ 435 (755)
..+ + ....+....+.+ +.
T Consensus 220 ~~~------------------------------~-----~~~~~~~i~~~~-~~-------------------------- 237 (414)
T 3oiy_A 220 TVG------------------------------R-----LVSVARNITHVR-IS-------------------------- 237 (414)
T ss_dssp CSS------------------------------C-----CCCCCCSEEEEE-ES--------------------------
T ss_pred CcC------------------------------c-----cccccccchhee-ec--------------------------
Confidence 000 0 000011111100 00
Q ss_pred cccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCC
Q psy5647 436 NTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDD 515 (755)
Q Consensus 436 ~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~ 515 (755)
..|...|..++.. .+.
T Consensus 238 ------------------------------------------------------------~~~~~~l~~~l~~----~~~ 253 (414)
T 3oiy_A 238 ------------------------------------------------------------SRSKEKLVELLEI----FRD 253 (414)
T ss_dssp ------------------------------------------------------------SCCHHHHHHHHHH----HCS
T ss_pred ------------------------------------------------------------cCHHHHHHHHHHH----cCC
Confidence 0122233344443 147
Q ss_pred EEEEEEechhHHHHHHHHHHhcCCcEE-EEcCCCCHHHHHHHHHHHccCCCceEEEee----cCCcccccccCC-CCEEE
Q psy5647 516 KIVLVSNYTQTLDLFERLSKLRGYKYV-RLDGSMTIKKRAKVVETFNKTSNEFIFMLS----SKAGGCGLNLIG-ANRLV 589 (755)
Q Consensus 516 KvlIFs~~~~~ld~l~~~L~~~g~~~~-~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS----t~agg~GLNL~~-a~~vI 589 (755)
++|||++.....+.+...|...|+.+. .++|. +|. ++.|+++... +|++ |.++++|+|+++ ++.||
T Consensus 254 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~--vLvat~s~T~~~~~GiDip~~v~~VI 325 (414)
T 3oiy_A 254 GILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN--ILIGVQAYYGKLTRGVDLPERIKYVI 325 (414)
T ss_dssp SEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS--EEEEECCTTCCCCCCCCCTTTCCEEE
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe--EEEEecCcCchhhccCccccccCEEE
Confidence 999999999999999999999999998 88884 444 9999986544 4566 999999999999 99999
Q ss_pred EeCCC--CCCCcHHHHhHhhhccCCC--CcEEEEEEeeCCCHHHHHHHHHHHHHH
Q psy5647 590 MFDPD--WNPANDDQAMARVWRDGQK--KPCFVYRFLSTGSIEEKMMQRQAHKKA 640 (755)
Q Consensus 590 ~~D~~--WNp~~~~Qa~gR~~R~GQ~--k~V~Vyrlv~~gTiEEkI~~r~~~K~~ 640 (755)
+||++ +++..+.|++||++|.|+. +.-.++.|+ -|...++.......
T Consensus 326 ~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 326 FWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp EESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 99999 9999999999999999985 566666676 24455555444444
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=1.9e-25 Score=258.53 Aligned_cols=341 Identities=17% Similarity=0.218 Sum_probs=217.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|+|.+++..++. ..+..+|+..+||+|||++++..+...+..+....+...++|||+|. .|+.||.++
T Consensus 93 ~~~~~~Q~~~i~~~l~-------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS-------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp SSCCHHHHHHHHHHHS-------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHH
Confidence 3699999999988752 24678999999999999998887766665544322223469999999 888999999
Q ss_pred HHHHhCC-----CceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh---hcCCccEEEEeCCcc
Q psy5647 224 ITKWLGG-----RVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL---HKNEVGLVLCDEGHR 294 (755)
Q Consensus 224 ~~kw~~~-----~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l---~~~~~~lvIiDEaH~ 294 (755)
+.+++.. ...+..+.++.. ......+ .. ...+|+|+|++.+....... .-..+++||+||||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-----~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 166 VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM---NK-----LRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH---HH-----HCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHhhccccCceeEEEEECCcCHHHHHHHH---hc-----CCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 9997531 234455555533 2222222 11 13579999999997654322 234689999999999
Q ss_pred cCCCc-cHHHHHH-Hcc---c-----cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCC
Q psy5647 295 LKNCE-SQTYQAL-MGL---K-----AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCAS 364 (755)
Q Consensus 295 lKn~~-s~~~~al-~~l---~-----~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~ 364 (755)
+.... ......+ ..+ . ....+++|||+-. .+.++ +... +. .|..
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~----~~----------~~~~-------- 291 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNI----MN----------KKEC-------- 291 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTT----CC----------SSEE--------
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHH---HHHh----cC----------CCce--------
Confidence 86543 1222222 222 1 3468999999732 11111 1100 00 0000
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEE-EEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccH
Q psy5647 365 DAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ-VVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443 (755)
Q Consensus 365 ~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~-vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (755)
..+. ............... .+.+.-.
T Consensus 292 --------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 318 (563)
T 3i5x_A 292 --------------------LFLD-TVDKNEPEAHERIDQSVVISEKF-------------------------------- 318 (563)
T ss_dssp --------------------EEEE-SSCSSSCSSCTTEEEEEEEESST--------------------------------
T ss_pred --------------------EEEe-ccCCCCccccccCceEEEECchh--------------------------------
Confidence 0000 000000000000001 1111000
Q ss_pred HHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhc-cCCCEEEEEEe
Q psy5647 444 LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM-TTDDKIVLVSN 522 (755)
Q Consensus 444 l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~-~~~~KvlIFs~ 522 (755)
.......+..+...+.. ..+.++|||++
T Consensus 319 ---------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~ 347 (563)
T 3i5x_A 319 ---------------------------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAP 347 (563)
T ss_dssp ---------------------------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECS
T ss_pred ---------------------------------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcC
Confidence 00011112222222221 35789999999
Q ss_pred chhHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCc
Q psy5647 523 YTQTLDLFERLSKLR---GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599 (755)
Q Consensus 523 ~~~~ld~l~~~L~~~---g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~ 599 (755)
.....+.+...|... |+.+..++|+++..+|.++++.|.++... +|++|.+++.|||+++++.||+||+++++..
T Consensus 348 s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~--vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~ 425 (563)
T 3i5x_A 348 TVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEVLQIGVPSELAN 425 (563)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEEEEESCCSSTTH
T ss_pred cHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC--EEEEcchhhcCCCcccCCEEEEECCCCchhh
Confidence 999999999999887 99999999999999999999999986543 7899999999999999999999999999999
Q ss_pred HHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647 600 DDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 600 ~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~ 636 (755)
+.|++||++|.|+...+ +.|++.. |...++...
T Consensus 426 y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 426 YIHRIGRTARSGKEGSS--VLFICKD--ELPFVRELE 458 (563)
T ss_dssp HHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHHH
T ss_pred hhhhcCccccCCCCceE--EEEEchh--HHHHHHHHH
Confidence 99999999999976444 4455554 334444443
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=1.4e-25 Score=259.38 Aligned_cols=311 Identities=13% Similarity=0.106 Sum_probs=210.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+||+|.+++..++ .++.+|+..++|+|||+..+..+. .. .+.+|||+|. +|+.||.+.
T Consensus 43 ~~~rp~Q~~~i~~il---------~g~d~lv~~pTGsGKTl~~~lpal--~~--------~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 43 EKFRPLQLETINVTM---------AGKEVFLVMPTGGGKSLCYQLPAL--CS--------DGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp CSCCTTHHHHHHHHH---------TTCCEEEECCTTSCTTHHHHHHHH--TS--------SSEEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---------cCCCEEEEECCCChHHHHHHHHHH--Hc--------CCcEEEEeCHHHHHHHHHHH
Confidence 378999999999874 356799999999999987654442 11 1368999999 889999999
Q ss_pred HHHHhCCCceEEEecCCCHHH-HHHHHHHHHHHhCCCCCCCEEEEehhhHhh---hhhh----hhcCCccEEEEeCCccc
Q psy5647 224 ITKWLGGRVAALPIDGGSKAE-IDNKLNSFMQTYGRRPVNPILVISYETFRS---HASV----LHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~VlI~sye~l~~---~~~~----l~~~~~~lvIiDEaH~l 295 (755)
+.++ .+.+..+.++.... ....+.... ......+|+++|++.+.. .... +....+++||+||||.+
T Consensus 104 l~~~---gi~~~~l~~~~~~~~~~~~~~~l~---~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~i 177 (591)
T 2v1x_A 104 LKQL---GISATMLNASSSKEHVKWVHAEMV---NKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCC 177 (591)
T ss_dssp HHHH---TCCEEECCSSCCHHHHHHHHHHHH---CTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGG
T ss_pred HHhc---CCcEEEEeCCCCHHHHHHHHHHhh---cccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccc
Confidence 9997 24555666654333 222222221 112456899999998853 2222 22347899999999997
Q ss_pred CCCc-------cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHH
Q psy5647 296 KNCE-------SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAER 368 (755)
Q Consensus 296 Kn~~-------s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~ 368 (755)
.... .........+....+++|||||-.....++...+..-.+-. +.
T Consensus 178 s~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~----------~~---------------- 231 (591)
T 2v1x_A 178 SQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFT----------FT---------------- 231 (591)
T ss_dssp STTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEE----------EE----------------
T ss_pred cccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEE----------Ee----------------
Confidence 6432 11112223345677899999995433333322221100000 00
Q ss_pred HHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHH
Q psy5647 369 TKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSIT 448 (755)
Q Consensus 369 ~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 448 (755)
.....+...+.+....
T Consensus 232 --------------------------~~~~r~nl~~~v~~~~-------------------------------------- 247 (591)
T 2v1x_A 232 --------------------------ASFNRPNLYYEVRQKP-------------------------------------- 247 (591)
T ss_dssp --------------------------CCCCCTTEEEEEEECC--------------------------------------
T ss_pred --------------------------cCCCCcccEEEEEeCC--------------------------------------
Confidence 0000011111110000
Q ss_pred HHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhc-cCCCEEEEEEechhHH
Q psy5647 449 SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM-TTDDKIVLVSNYTQTL 527 (755)
Q Consensus 449 ~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~-~~~~KvlIFs~~~~~l 527 (755)
+.+...+..++..+.. ..+.++|||++.....
T Consensus 248 -----------------------------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~ 280 (591)
T 2v1x_A 248 -----------------------------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDS 280 (591)
T ss_dssp -----------------------------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHH
T ss_pred -----------------------------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHH
Confidence 0011112223333321 2478999999999999
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCCCcHHHHhHhh
Q psy5647 528 DLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARV 607 (755)
Q Consensus 528 d~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~ 607 (755)
+.+...|...|+.+..++|+++..+|.++++.|.++... +|++|.+.|.|||++.++.||+||+++++..|.|++||+
T Consensus 281 e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~--VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 281 EQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ--VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 999999999999999999999999999999999986554 789999999999999999999999999999999999999
Q ss_pred hccCCCCcEEEE
Q psy5647 608 WRDGQKKPCFVY 619 (755)
Q Consensus 608 ~R~GQ~k~V~Vy 619 (755)
+|.|+...+.++
T Consensus 359 GR~G~~g~~i~l 370 (591)
T 2v1x_A 359 GRDDMKADCILY 370 (591)
T ss_dssp CTTSSCEEEEEE
T ss_pred CcCCCCceEEEE
Confidence 999987666554
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=1.7e-25 Score=276.26 Aligned_cols=312 Identities=15% Similarity=0.204 Sum_probs=216.4
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...++|+|.+++..+...... .....+|++.+||+|||++++..+......+ +++||+||+ .|..||.
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~---g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-------~~vlvlvPt~~La~Q~~ 669 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQ---PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-------KQVAVLVPTTLLAQQHY 669 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHS---SSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-------CEEEEECSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhc---CCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CeEEEEechHHHHHHHH
Confidence 3456899999999998875421 1123789999999999999987666555443 369999999 5778999
Q ss_pred HHHHHHhCC-CceEEEecCCCH-HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSK-AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
++|.++++. .+.+..+.+... .+....+... .. ...+|+|+|++.+.... .-..+++||+||+|++ .
T Consensus 670 ~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l-~~----g~~dIvV~T~~ll~~~~---~~~~l~lvIiDEaH~~---g 738 (1151)
T 2eyq_A 670 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEV-AE----GKIDILIGTHKLLQSDV---KFKDLGLLIVDEEHRF---G 738 (1151)
T ss_dssp HHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHH-HT----TCCSEEEECTHHHHSCC---CCSSEEEEEEESGGGS---C
T ss_pred HHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHH-hc----CCCCEEEECHHHHhCCc---cccccceEEEechHhc---C
Confidence 999999875 455555555432 2222222222 11 24689999999886532 3357899999999997 3
Q ss_pred cHHHHHHHcccc-ccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLKA-KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l~~-~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
......+..+.. .++++|||||+.+.+.....-+. ++
T Consensus 739 ~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~--~~---------------------------------------- 776 (1151)
T 2eyq_A 739 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR--DL---------------------------------------- 776 (1151)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTS--EE----------------------------------------
T ss_pred hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCC--Cc----------------------------------------
Confidence 445555666644 56899999998654322111000 00
Q ss_pred HHhHhHHHHhcchhHhhccCCCce---EEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhC
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKT---EQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~---e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~n 455 (755)
..+ ..|+.. .........+
T Consensus 777 -------------~~i--~~~~~~r~~i~~~~~~~~~------------------------------------------- 798 (1151)
T 2eyq_A 777 -------------SII--ATPPARRLAVKTFVREYDS------------------------------------------- 798 (1151)
T ss_dssp -------------EEC--CCCCCBCBCEEEEEEECCH-------------------------------------------
T ss_pred -------------eEE--ecCCCCccccEEEEecCCH-------------------------------------------
Confidence 000 011100 0000000000
Q ss_pred ChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHH
Q psy5647 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535 (755)
Q Consensus 456 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~ 535 (755)
..+...++..+. .+.+++|||+....++.+.+.|+
T Consensus 799 -------------------------------------------~~i~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~ 833 (1151)
T 2eyq_A 799 -------------------------------------------MVVREAILREIL--RGGQVYYLYNDVENIQKAAERLA 833 (1151)
T ss_dssp -------------------------------------------HHHHHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHH
Confidence 111222333332 47899999999999999999998
Q ss_pred hc--CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCC-CCCCCcHHHHhHhhhccCC
Q psy5647 536 LR--GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP-DWNPANDDQAMARVWRDGQ 612 (755)
Q Consensus 536 ~~--g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~-~WNp~~~~Qa~gR~~R~GQ 612 (755)
.. ++.+..++|+++..+|.++++.|+++... +|++|.++++|||++.+++||++++ .|+++.+.|++||++|.|+
T Consensus 834 ~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~--VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~ 911 (1151)
T 2eyq_A 834 ELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 911 (1151)
T ss_dssp HHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC--EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB
T ss_pred HhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC
Confidence 88 88999999999999999999999975544 7899999999999999999999999 5899999999999999997
Q ss_pred CCcEEEEEEeeC
Q psy5647 613 KKPCFVYRFLST 624 (755)
Q Consensus 613 ~k~V~Vyrlv~~ 624 (755)
... +|.++..
T Consensus 912 ~g~--~~ll~~~ 921 (1151)
T 2eyq_A 912 QAY--AWLLTPH 921 (1151)
T ss_dssp CEE--EEEEECC
T ss_pred ceE--EEEEECC
Confidence 544 4555554
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.2e-26 Score=260.55 Aligned_cols=312 Identities=16% Similarity=0.142 Sum_probs=186.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|+|.+++..++. ..+..+|+..+||+|||++++..+...+..+.. ..++|||+|. .|+.||.+++
T Consensus 141 ~p~~~Q~~ai~~i~~-------~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~----~~~vLvl~P~~~L~~Q~~~~~ 209 (508)
T 3fho_A 141 XXXKIQEKALPLLLS-------NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP----KPQAICLAPSRELARQIMDVV 209 (508)
T ss_dssp ECCCTTSSSHHHHHC-------SSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC----SCCEEEECSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc-------CCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC----CceEEEEECcHHHHHHHHHHH
Confidence 589999999988753 124789999999999999987776665544321 2468999999 6889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc--
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
.++++. .+......++.... ......+|+|+|++.+..... .+....+++||+||||++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~ 277 (508)
T 3fho_A 210 TEMGKYTEVKTAFGIKDSVPK------------GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL 277 (508)
T ss_dssp HHHSTTSSCCEEC----------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--C
T ss_pred HHhCCccCeeEEEEeCCcccc------------cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCc
Confidence 999764 23333222221110 011246899999999876432 2233568999999999986522
Q ss_pred cHHHHHH-Hccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 SQTYQAL-MGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 s~~~~al-~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+ ..+. ....++|||||-. .+.++... +. ..+......
T Consensus 278 ~~~~~~i~~~~~~~~~~i~lSAT~~~-~~~~~~~~---~~--------------~~~~~i~~~----------------- 322 (508)
T 3fho_A 278 GDQSMRIKHLLPRNTQIVLFSATFSE-RVEKYAER---FA--------------PNANEIRLK----------------- 322 (508)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCCST-HHHHHHHH---HS--------------TTCEEECCC-----------------
T ss_pred HHHHHHHHHhCCcCCeEEEEeCCCCH-HHHHHHHH---hc--------------CCCeEEEec-----------------
Confidence 2233333 3333 4557999999832 22222110 00 000000000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
..... .+......+.+
T Consensus 323 -------------~~~~~--~~~~~~~~~~~------------------------------------------------- 338 (508)
T 3fho_A 323 -------------TEELS--VEGIKQLYMDC------------------------------------------------- 338 (508)
T ss_dssp -------------CCC------CCCCEEEEC-------------------------------------------------
T ss_pred -------------cccCC--cccceEEEEEC-------------------------------------------------
Confidence 00000 00000000000
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~ 537 (755)
.....|...+..++.. ..+.++|||++....++.+...|...
T Consensus 339 -----------------------------------~~~~~k~~~l~~ll~~---~~~~~~LVF~~s~~~a~~l~~~L~~~ 380 (508)
T 3fho_A 339 -----------------------------------QSEEHKYNVLVELYGL---LTIGQSIIFCKKKDTAEEIARRMTAD 380 (508)
T ss_dssp -------------------------------------CHHHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTT
T ss_pred -----------------------------------CchHHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhC
Confidence 0112233334444333 24679999999999999999999999
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCC------CCCCcHHHHhHhhhccC
Q psy5647 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD------WNPANDDQAMARVWRDG 611 (755)
Q Consensus 538 g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~------WNp~~~~Qa~gR~~R~G 611 (755)
|+.+..++|+++..+|.++++.|+++... +|++|.++++|+|++.++.||++|++ +++..+.|++||++|.|
T Consensus 381 ~~~v~~~hg~~~~~~R~~il~~f~~g~~~--VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g 458 (508)
T 3fho_A 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSK--VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG 458 (508)
T ss_dssp TCCCCEEC-----CTTGGGTHHHHSSSCC--CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC---
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC
Confidence 99999999999999999999999876554 68999999999999999999999999 78999999999999999
Q ss_pred CCCcEEEE
Q psy5647 612 QKKPCFVY 619 (755)
Q Consensus 612 Q~k~V~Vy 619 (755)
+...+.++
T Consensus 459 ~~g~~i~l 466 (508)
T 3fho_A 459 RVGVSINF 466 (508)
T ss_dssp --CEEEEE
T ss_pred CCcEEEEE
Confidence 77655543
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.1e-24 Score=259.37 Aligned_cols=352 Identities=15% Similarity=0.162 Sum_probs=218.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|||.+++..+.. +.++|++.++|+|||+++...+...+..+ .++||++|. .|..||.+
T Consensus 84 ~f~L~~~Q~eai~~l~~---------g~~vLV~apTGSGKTlva~lai~~~l~~g-------~rvL~l~PtkaLa~Q~~~ 147 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR---------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 147 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH---------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc---------CCCEEEECCCCCChHHHHHHHHHHHhccC-------CeEEEECChHHHHHHHHH
Confidence 34699999999998743 46799999999999999877776666543 469999999 88899999
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+|.++++ .+..+.|+.... ...+|+|+|++.+...... ..-..+++||+||+|++.+..
T Consensus 148 ~l~~~~~---~vglltGd~~~~---------------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~r 209 (1010)
T 2xgj_A 148 ELLAEFG---DVGLMTGDITIN---------------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 209 (1010)
T ss_dssp HHHHHHS---CEEEECSSCEEC---------------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHhC---CEEEEeCCCccC---------------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccch
Confidence 9999987 233344443211 2357999999998764321 222368999999999997753
Q ss_pred cH-HHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 SQ-TYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 s~-~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
.. ....+..+ ...+.|+||||+ . +..++...+.-+. ..|..
T Consensus 210 g~~~e~il~~l~~~~~il~LSATi-~-n~~e~a~~l~~~~--------------~~~~~--------------------- 252 (1010)
T 2xgj_A 210 GVVWEETIILLPDKVRYVFLSATI-P-NAMEFAEWICKIH--------------SQPCH--------------------- 252 (1010)
T ss_dssp HHHHHHHHHHSCTTCEEEEEECCC-T-THHHHHHHHHHHH--------------TSCEE---------------------
T ss_pred hHHHHHHHHhcCCCCeEEEEcCCC-C-CHHHHHHHHHhhc--------------CCCeE---------------------
Confidence 22 23334444 356789999995 2 2333332222110 00000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEEcC--------C---HHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHH
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM--------T---DLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~l--------s---~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 446 (755)
+ .....-|....+.++... . .....-|...+. .+...
T Consensus 253 ---------v-----i~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~~------------ 300 (1010)
T 2xgj_A 253 ---------I-----VYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA------SISNQ------------ 300 (1010)
T ss_dssp ---------E-----EEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH------TCC--------------
T ss_pred ---------E-----EecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH------HHhhh------------
Confidence 0 000011222222221100 0 000000110000 00000
Q ss_pred HHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhh-hHHHHHHHHHHHhccCCCEEEEEEechh
Q psy5647 447 ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSA-KLMVLDTMLAVIKMTTDDKIVLVSNYTQ 525 (755)
Q Consensus 447 i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~-Kl~~L~~lL~~~~~~~~~KvlIFs~~~~ 525 (755)
....|.- ..+.+... ...... ...+ ....+..++..+......++|||+++..
T Consensus 301 ------~~~~~~~-----------------~~~~g~~~--~~~k~~-~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~ 354 (1010)
T 2xgj_A 301 ------IGDDPNS-----------------TDSRGKKG--QTYKGG-SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKR 354 (1010)
T ss_dssp ------------------------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHH
T ss_pred ------hcccccc-----------------cccccccc--cccccc-cccccchHHHHHHHHHHHhcCCCCEEEEECCHH
Confidence 0000000 00000000 000000 0000 0223344455554445669999999999
Q ss_pred HHHHHHHHHHhcCCc---------------------------------------EEEEcCCCCHHHHHHHHHHHccCCCc
Q psy5647 526 TLDLFERLSKLRGYK---------------------------------------YVRLDGSMTIKKRAKVVETFNKTSNE 566 (755)
Q Consensus 526 ~ld~l~~~L~~~g~~---------------------------------------~~~ldG~~~~~~R~~~v~~Fn~~~~~ 566 (755)
..+.+...|...++. +..++|+++..+|..+.+.|+++...
T Consensus 355 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik 434 (1010)
T 2xgj_A 355 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 434 (1010)
T ss_dssp HHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc
Confidence 999888887664442 77899999999999999999986554
Q ss_pred eEEEeecCCcccccccCCCCEEEE----eCC----CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 567 FIFMLSSKAGGCGLNLIGANRLVM----FDP----DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 567 ~v~LlSt~agg~GLNL~~a~~vI~----~D~----~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
+|++|.+++.|||+++++.||. ||. +|+|..+.|++||++|.|+.....+|.++..+.
T Consensus 435 --VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 435 --VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp --EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred --EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 7899999999999999999998 999 999999999999999999988889998888663
No 36
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=250.04 Aligned_cols=313 Identities=16% Similarity=0.210 Sum_probs=105.3
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|+|.+++..++. ..+..+|+..++|+|||++++..+...+..+.. ..++|||+|. .|..||.+.
T Consensus 113 ~~p~~~Q~~ai~~il~-------~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~----~~~~lil~Pt~~La~Q~~~~ 181 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKV 181 (479)
T ss_dssp CSCCHHHHHHHHHHTS-------BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC----CCcEEEEeChHHHHHHHHHH
Confidence 4789999999988753 234779999999999999976665544333221 2358999999 778899888
Q ss_pred HHHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCCC
Q psy5647 224 ITKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 224 ~~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn~ 298 (755)
+.++... .+.+....++.... .+.....+|+|+|++.+...... +....+++||+||||++...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~ 250 (479)
T 3fmp_B 182 IEQMGKFYPELKLAYAVRGNKLE-----------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (479)
T ss_dssp HHHHHTTSTTCCEEEESTTCCCC-----------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTS
T ss_pred HHHHHhhCCCceEEEEeCCcccc-----------ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhc
Confidence 8877542 23443333332211 01123457999999999765532 22346899999999988542
Q ss_pred c--cHHHHHHHc-c-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHH
Q psy5647 299 E--SQTYQALMG-L-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANER 374 (755)
Q Consensus 299 ~--s~~~~al~~-l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~ 374 (755)
. ......+.. + .....+++||||-. +.+.+...
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~--------------------------------------- 287 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQK--------------------------------------- 287 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHHHH---------------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHHHH---------------------------------------
Confidence 2 222223333 2 34567999999832 11111110
Q ss_pred HHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHh
Q psy5647 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454 (755)
Q Consensus 375 ~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~ 454 (755)
.+|... .+.+. ...... ..+ ......|
T Consensus 288 ----------------------~~~~~~--~i~~~--~~~~~~-~~~--------------------------~~~~~~~ 314 (479)
T 3fmp_B 288 ----------------------VVPDPN--VIKLK--REEETL-DTI--------------------------KQYYVLC 314 (479)
T ss_dssp ----------------------HSSSEE--EEEEC---------------------------------------------
T ss_pred ----------------------HcCCCe--EEecc--ccccCc-CCc--------------------------eEEEEEe
Confidence 011111 11111 000000 000 0000000
Q ss_pred CChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHH
Q psy5647 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534 (755)
Q Consensus 455 nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L 534 (755)
.....|...|..++.. ..+.++||||++....+.+...|
T Consensus 315 --------------------------------------~~~~~~~~~l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L 353 (479)
T 3fmp_B 315 --------------------------------------SSRDEKFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAEL 353 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------CCHHHHHHHHHHHHhh---ccCCceEEEeCcHHHHHHHHHHH
Confidence 0001222233333332 23568999999999999999999
Q ss_pred HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCCCC------CcHHHHhHhhh
Q psy5647 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP------ANDDQAMARVW 608 (755)
Q Consensus 535 ~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~WNp------~~~~Qa~gR~~ 608 (755)
...|+.+..++|+++..+|.++++.|+++... +|++|.+++.|||+++++.||.||++|++ ..+.|++||++
T Consensus 354 ~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~--iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRag 431 (479)
T 3fmp_B 354 SKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTG 431 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhCCccEEEecCCCCHHHHHHHHHHHHcCCCc--EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccc
Confidence 99999999999999999999999999975544 78999999999999999999999999876 69999999999
Q ss_pred ccCCCCcEEE
Q psy5647 609 RDGQKKPCFV 618 (755)
Q Consensus 609 R~GQ~k~V~V 618 (755)
|.|+...+.+
T Consensus 432 R~g~~G~~i~ 441 (479)
T 3fmp_B 432 RFGKRGLAVN 441 (479)
T ss_dssp ----------
T ss_pred cCCCCceEEE
Confidence 9997655443
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.3e-24 Score=256.73 Aligned_cols=311 Identities=18% Similarity=0.270 Sum_probs=202.3
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~ 221 (755)
+...|+|+|.+++..+...... ....++|+..++|+|||++++..+...+..+ ..++|++|. .|..||.
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~---~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-------~qvlvlaPtr~La~Q~~ 434 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMIS---EKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-------FQTAFMVPTSILAIQHY 434 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHS---SSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-------SCEEEECSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccc---cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCcHHHHHHHH
Confidence 3347999999999998875431 2235789999999999999998887777655 348999999 7789999
Q ss_pred HHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc
Q psy5647 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 222 ~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+++.+|++. .+.+..+.|+............... ...+|+|+|++.+... +.-.++++||+||+|++....
T Consensus 435 ~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~----g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q- 506 (780)
T 1gm5_A 435 RRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN----GQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ- 506 (780)
T ss_dssp HHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS----SCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC-----
T ss_pred HHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc----CCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH-
Confidence 999999874 4677777776544332222221221 2368999999988543 234578999999999973221
Q ss_pred HHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 301 QTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 301 ~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
...+... ...+.++|||||+...+...+ +-... .
T Consensus 507 --r~~l~~~~~~~~vL~mSATp~p~tl~~~~----~g~~~-------------~-------------------------- 541 (780)
T 1gm5_A 507 --REALMNKGKMVDTLVMSATPIPRSMALAF----YGDLD-------------V-------------------------- 541 (780)
T ss_dssp ---CCCCSSSSCCCEEEEESSCCCHHHHHHH----TCCSS-------------C--------------------------
T ss_pred --HHHHHHhCCCCCEEEEeCCCCHHHHHHHH----hCCcc-------------e--------------------------
Confidence 1111111 357789999999764432111 00000 0
Q ss_pred HhHhHHHHhcchhHhhccCCCceEE--EEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCCh
Q psy5647 380 GIVNRCLIRRTSALLSKYLPVKTEQ--VVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457 (755)
Q Consensus 380 ~~l~~~~lRRt~~~v~~~LP~k~e~--vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp 457 (755)
.+...+|+.... ...+... ....++
T Consensus 542 -------------s~i~~~p~~r~~i~~~~~~~~-~~~~l~--------------------------------------- 568 (780)
T 1gm5_A 542 -------------TVIDEMPPGRKEVQTMLVPMD-RVNEVY--------------------------------------- 568 (780)
T ss_dssp -------------EEECCCCSSCCCCEECCCCSS-THHHHH---------------------------------------
T ss_pred -------------eeeeccCCCCcceEEEEeccc-hHHHHH---------------------------------------
Confidence 000012221100 0000000 000011
Q ss_pred hhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEech--------hHHHH
Q psy5647 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYT--------QTLDL 529 (755)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~--------~~ld~ 529 (755)
..+...+ ..+.+++|||+.. ...+.
T Consensus 569 ---------------------------------------------~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~ 601 (780)
T 1gm5_A 569 ---------------------------------------------EFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVE 601 (780)
T ss_dssp ---------------------------------------------HHHHHHT--TTSCCBCCBCCCC--------CHHHH
T ss_pred ---------------------------------------------HHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHH
Confidence 1111111 2345666666543 23455
Q ss_pred HHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCCCC-CCCcHHHHhH
Q psy5647 530 FERLSKL---RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDDQAMA 605 (755)
Q Consensus 530 l~~~L~~---~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W-Np~~~~Qa~g 605 (755)
+.+.|.. .++.+..++|+++.++|.++++.|+++... +|++|.++++|+|++.++.||++|+++ +.+.+.|++|
T Consensus 602 l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~--ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~G 679 (780)
T 1gm5_A 602 MYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD--ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRG 679 (780)
T ss_dssp HHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS--BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHH
T ss_pred HHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhc
Confidence 6666666 478899999999999999999999976544 789999999999999999999999995 7899999999
Q ss_pred hhhccCCCCcEEE
Q psy5647 606 RVWRDGQKKPCFV 618 (755)
Q Consensus 606 R~~R~GQ~k~V~V 618 (755)
|++|.|+...|.+
T Consensus 680 RaGR~g~~g~~il 692 (780)
T 1gm5_A 680 RVGRGGQEAYCFL 692 (780)
T ss_dssp TSCCSSTTCEEEC
T ss_pred ccCcCCCCCEEEE
Confidence 9999998766554
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.3e-23 Score=250.40 Aligned_cols=357 Identities=16% Similarity=0.181 Sum_probs=218.9
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|+|.+++..+ ..+..+|++.++|+|||+++...+...+..+ +++||++|. .|..||.+
T Consensus 182 ~f~ltp~Q~~AI~~i---------~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-------~rvlvl~PtraLa~Q~~~ 245 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCI---------DRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-------QRVIYTSPIKALSNQKYR 245 (1108)
T ss_dssp SSCCCHHHHHHHHHH---------TTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-------CEEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH---------HcCCCEEEECCCCCChHHHHHHHHHHHHhcC-------CeEEEEcCcHHHHHHHHH
Confidence 346999999999886 3567899999999999999988887776554 469999999 78899999
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+|.++++. +. .+.|+.. .....+|+|+|++.+...... ..-..+++||+||||++....
T Consensus 246 ~l~~~~~~-Vg--lltGd~~---------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 246 ELLAEFGD-VG--LMTGDIT---------------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHTSS-EE--EECSSCB---------------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHhCC-cc--EEeCccc---------------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999873 32 2444332 113468999999998765422 111257899999999996532
Q ss_pred -cHHHHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+ ...+.++|||| +.|. .++...+..+... |+...
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~~~~~--------------~~~vi------------------- 352 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSAT-IPNA-MEFAEWICKIHSQ--------------PCHIV------------------- 352 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHHHHHTCS--------------CEEEE-------------------
T ss_pred HHHHHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHHHhhcCC--------------CeEEE-------------------
Confidence 2222333344 34668999999 4444 3333322221110 00000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEE-----------EcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHH
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVC-----------IKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~-----------~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 446 (755)
....-|....+.++ -.........|...+.... ...
T Consensus 353 ----------------~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~------~~~----------- 399 (1108)
T 3l9o_A 353 ----------------YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS------NQI----------- 399 (1108)
T ss_dssp ----------------EECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------------
T ss_pred ----------------ecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH------hhh-----------
Confidence 00001111111111 1111111112221111000 000
Q ss_pred HHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhH
Q psy5647 447 ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQT 526 (755)
Q Consensus 447 i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ 526 (755)
...+.... . .+. .. ..+ .... ........+..++..+....+.++|||++....
T Consensus 400 -------~~~~~~~~-----~-~~~--~~----~~~----~~~~---~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~ 453 (1108)
T 3l9o_A 400 -------GDDPNSTD-----S-RGK--KG----QTY----KGGS---AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRD 453 (1108)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred -------cccccccc-----c-ccc--cc----ccc----cccc---ccccchhHHHHHHHHHHhcCCCCEEEEeCcHHH
Confidence 00000000 0 000 00 000 0000 000012233445555555567799999999999
Q ss_pred HHHHHHHHHhcCCc---------------------------------------EEEEcCCCCHHHHHHHHHHHccCCCce
Q psy5647 527 LDLFERLSKLRGYK---------------------------------------YVRLDGSMTIKKRAKVVETFNKTSNEF 567 (755)
Q Consensus 527 ld~l~~~L~~~g~~---------------------------------------~~~ldG~~~~~~R~~~v~~Fn~~~~~~ 567 (755)
.+.+...|...|+. +..++|+++..+|..+.+.|.++...
T Consensus 454 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik- 532 (1108)
T 3l9o_A 454 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK- 532 (1108)
T ss_dssp HHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe-
Confidence 99888877654332 68899999999999999999986554
Q ss_pred EEEeecCCcccccccCCCCEEEEeCCCCCCCc--------HHHHhHhhhccCCCCcEEEEEEeeCCCHHHH
Q psy5647 568 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN--------DDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630 (755)
Q Consensus 568 v~LlSt~agg~GLNL~~a~~vI~~D~~WNp~~--------~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEk 630 (755)
+|++|.+++.|||+++++.||.++.+|++.. |.|++||++|.|+....++|.+...+..++.
T Consensus 533 -VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~ 602 (1108)
T 3l9o_A 533 -VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQV 602 (1108)
T ss_dssp -EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHH
T ss_pred -EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHH
Confidence 7899999999999999999999999888876 9999999999999989999988877744433
No 39
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=4.8e-22 Score=235.91 Aligned_cols=322 Identities=17% Similarity=0.136 Sum_probs=209.9
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|+|+|.+++..+ ..+..+|++.++|+|||+++...+...+..+ .++++++|. .|..+|.+++
T Consensus 25 ~l~~~Q~~~i~~i---------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 25 ELFPPQAEAVEKV---------FSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-------GKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp CCCCCCHHHHHHH---------TTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---------hCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CcEEEEeCcHHHHHHHHHHH
Confidence 7899999999885 3467899999999999999977666555432 358999999 5889999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhh--cCCccEEEEeCCcccCCCc--c
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLH--KNEVGLVLCDEGHRLKNCE--S 300 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~--~~~~~lvIiDEaH~lKn~~--s 300 (755)
.+|....+.+....|....... .....+|+|+|++.+......-. -..+++||+||+|.+.... .
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~~-----------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~ 157 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRDE-----------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGA 157 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCSS-----------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHH
T ss_pred HHHHhcCCEEEEEeCCCCcchh-----------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCccc
Confidence 7665544555555554322110 11246899999999865432211 1357899999999987632 2
Q ss_pred HHHHHHHcc----ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHH
Q psy5647 301 QTYQALMGL----KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376 (755)
Q Consensus 301 ~~~~al~~l----~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~ 376 (755)
.....+..+ ...+.++||||+- +..++.. |+.... |..
T Consensus 158 ~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~----------~~~----------------------- 199 (702)
T 2p6r_A 158 TLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADY----------YVS----------------------- 199 (702)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEE----------EEC-----------------------
T ss_pred HHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCc----------ccC-----------------------
Confidence 222223333 3567899999973 2444433 221110 000
Q ss_pred HHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCC
Q psy5647 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456 (755)
Q Consensus 377 ~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nh 456 (755)
..-|...+..+..... ++ ...+.. ..
T Consensus 200 -------------------~~r~~~l~~~~~~~~~-----~~------------~~~~~~--~~---------------- 225 (702)
T 2p6r_A 200 -------------------DWRPVPLVEGVLCEGT-----LE------------LFDGAF--ST---------------- 225 (702)
T ss_dssp -------------------CCCSSCEEEEEECSSE-----EE------------EEETTE--EE----------------
T ss_pred -------------------CCCCccceEEEeeCCe-----ee------------ccCcch--hh----------------
Confidence 0011111111110000 00 000000 00
Q ss_pred hhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh
Q psy5647 457 PDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536 (755)
Q Consensus 457 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~ 536 (755)
. ... .+...+.+.+ ..+.++|||++.....+.+...|..
T Consensus 226 -------------------------~------~~~-----~~~~~~~~~~-----~~~~~~LVF~~s~~~~~~~a~~L~~ 264 (702)
T 2p6r_A 226 -------------------------S------RRV-----KFEELVEECV-----AENGGVLVFESTRRGAEKTAVKLSA 264 (702)
T ss_dssp -------------------------E------EEC-----CHHHHHHHHH-----HTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred -------------------------h------hhh-----hHHHHHHHHH-----hcCCCEEEEcCCHHHHHHHHHHHHH
Confidence 0 000 0111122222 1367899999999888777766654
Q ss_pred c------------------------------CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCC
Q psy5647 537 R------------------------------GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGAN 586 (755)
Q Consensus 537 ~------------------------------g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~ 586 (755)
. +..+..++|+++.++|..+.+.|.++... +|++|.+++.|||+++.+
T Consensus 265 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~ 342 (702)
T 2p6r_A 265 ITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK--VVVATPTLAAGVNLPARR 342 (702)
T ss_dssp HHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC--EEEECSTTTSSSCCCBSE
T ss_pred HHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe--EEEECcHHhccCCCCceE
Confidence 2 23567799999999999999999976544 789999999999999999
Q ss_pred EEEE----eC---CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHH
Q psy5647 587 RLVM----FD---PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629 (755)
Q Consensus 587 ~vI~----~D---~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEE 629 (755)
.||. || .+++++.+.|++||++|.|+.++-.+|.+++....+.
T Consensus 343 ~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 343 VIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp EEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred EEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 9888 77 7899999999999999999999999999998877543
No 40
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=1e-21 Score=233.60 Aligned_cols=327 Identities=17% Similarity=0.147 Sum_probs=206.2
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR-QGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~-~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.|+|+|.+++..++ ..+..+|++.++|+|||+++...+...+. .+ .++++++|. .|..+|.++
T Consensus 30 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 30 KLNPPQTEAVKKGL--------LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG-------GKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp BCCHHHHHHHHTTT--------TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-------SEEEEECSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC-------CeEEEEeCcHHHHHHHHHH
Confidence 79999999998632 34678999999999999999776655443 32 469999999 588999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc--
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
+.++....+.+....|....... .. ...+|+|+|++.+...... ..-.++++||+||+|.+.+..
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~-----~~------~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~ 163 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDA-----WL------KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERG 163 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCG-----GG------GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTH
T ss_pred HHHhhcCCCEEEEEeCCCCCchh-----hc------CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccc
Confidence 96654434555555554322110 00 1357999999988754322 112357999999999986532
Q ss_pred cHHHHHHHccccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379 (755)
Q Consensus 300 s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L~ 379 (755)
......+..++..+.++||||+- +..++...+ +... |..
T Consensus 164 ~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~~l---~~~~----------~~~-------------------------- 202 (715)
T 2va8_A 164 PVVESVTIRAKRRNLLALSATIS--NYKQIAKWL---GAEP----------VAT-------------------------- 202 (715)
T ss_dssp HHHHHHHHHHHTSEEEEEESCCT--THHHHHHHH---TCEE----------EEC--------------------------
T ss_pred hHHHHHHHhcccCcEEEEcCCCC--CHHHHHHHh---CCCc----------cCC--------------------------
Confidence 22333344556788999999983 234433222 1110 000
Q ss_pred HhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChhh
Q psy5647 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459 (755)
Q Consensus 380 ~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~l 459 (755)
..-|...+..+....... . ... +
T Consensus 203 ----------------~~r~~~l~~~~~~~~~~~---------------------~--~~~------------------~ 225 (715)
T 2va8_A 203 ----------------NWRPVPLIEGVIYPERKK---------------------K--EYN------------------V 225 (715)
T ss_dssp ----------------CCCSSCEEEEEEEECSST---------------------T--EEE------------------E
T ss_pred ----------------CCCCCCceEEEEecCCcc---------------------c--cee------------------e
Confidence 001111111111100000 0 000 0
Q ss_pred hhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcC-
Q psy5647 460 VMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG- 538 (755)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g- 538 (755)
.+. .... ..+ . ....+...+.+++ ..+.++|||++.....+.+...|....
T Consensus 226 ~~~---~~~~----------~~~----~------~~~~~~~~~~~~~-----~~~~~~LVF~~s~~~~~~~a~~L~~~~~ 277 (715)
T 2va8_A 226 IFK---DNTT----------KKV----H------GDDAIIAYTLDSL-----SKNGQVLVFRNSRKMAESTALKIANYMN 277 (715)
T ss_dssp EET---TSCE----------EEE----E------SSSHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTTT
T ss_pred ecC---cchh----------hhc----c------cchHHHHHHHHHH-----hcCCCEEEEECCHHHHHHHHHHHHHHHh
Confidence 000 0000 000 0 0011122222222 246899999999998888877776531
Q ss_pred -----------------------------------CcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccC
Q psy5647 539 -----------------------------------YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLI 583 (755)
Q Consensus 539 -----------------------------------~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~ 583 (755)
..+..++|+++.++|..+.+.|.++... +|++|.+++.|||++
T Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~--vlvaT~~l~~Gidip 355 (715)
T 2va8_A 278 FVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK--VIVATPTLAAGVNLP 355 (715)
T ss_dssp SSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC--EEEECGGGGGSSCCC
T ss_pred hccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe--EEEEChHHhcccCCC
Confidence 3488899999999999999999976444 789999999999999
Q ss_pred CCCEEEE----eC-------CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 584 GANRLVM----FD-------PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 584 ~a~~vI~----~D-------~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
+.+.||. || .+++++.+.|++||++|.|+.++-.+|++.+...
T Consensus 356 ~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 356 ARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred ceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999988 99 8999999999999999999988888999987765
No 41
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=7.5e-22 Score=240.33 Aligned_cols=394 Identities=15% Similarity=0.132 Sum_probs=223.0
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|+|.+++..+. .+..+|++.++|+|||+.+...+..+...+ .++||++|. .|..||.+
T Consensus 37 ~f~l~~~Q~~aI~~il---------~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-------~~vlvl~PtraLa~Q~~~ 100 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLE---------QGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-------TKTIYTSPIKALSNQKFR 100 (997)
T ss_dssp SSCCCHHHHHHHHHHH---------TTCEEEEECCTTSCSHHHHHHHHHHHHHTT-------CEEEEEESCGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEEECCCCcHHHHHHHHHHHHHhcC-------CeEEEEeCCHHHHHHHHH
Confidence 3478999999998763 456899999999999998777766665544 358999998 78899999
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
++.+++++ +.+..+.|+... ....+|+|+|++.+...... .....+++||+||||++.+..
T Consensus 101 ~l~~~~~~-~~v~~l~G~~~~---------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~ 164 (997)
T 4a4z_A 101 DFKETFDD-VNIGLITGDVQI---------------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDR 164 (997)
T ss_dssp HHHTTC---CCEEEECSSCEE---------------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCT
T ss_pred HHHHHcCC-CeEEEEeCCCcc---------------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccch
Confidence 99998764 445555555321 12358999999999765422 122368999999999986642
Q ss_pred -cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHH
Q psy5647 300 -SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377 (755)
Q Consensus 300 -s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~ 377 (755)
......+..+. ..+.++|||||- +..++...+.....+ ++.
T Consensus 165 g~~~e~ii~~l~~~v~iIlLSAT~~--n~~ef~~~l~~~~~~--------------~~~--------------------- 207 (997)
T 4a4z_A 165 GVVWEEVIIMLPQHVKFILLSATVP--NTYEFANWIGRTKQK--------------NIY--------------------- 207 (997)
T ss_dssp TCCHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHHHHHTC--------------CEE---------------------
T ss_pred HHHHHHHHHhcccCCCEEEEcCCCC--ChHHHHHHHhcccCC--------------ceE---------------------
Confidence 33344445553 467799999973 233333322211100 000
Q ss_pred HHHhHhHHHHhcchhHhhccCCCceEEEEEE--------c-CCHHHHHHHHHHH---hhHHHHHH---H---cCCCcccc
Q psy5647 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCI--------K-MTDLQKELYTNLI---KSDAVRRT---M---KGGENTKL 439 (755)
Q Consensus 378 L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~--------~-ls~~q~~lY~~~~---~~~~~~~~---~---~~~~~~~~ 439 (755)
+ ......|...++.++. . ........|.... ........ + ..+.....
T Consensus 208 --------v------i~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 273 (997)
T 4a4z_A 208 --------V------ISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARG 273 (997)
T ss_dssp --------E------EECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------
T ss_pred --------E------EecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 0 0000112222221111 1 1111111121111 00000000 0 00000000
Q ss_pred cccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEE
Q psy5647 440 GMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVL 519 (755)
Q Consensus 440 ~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlI 519 (755)
. .-....+......... .. ......+..........+ ..........-..+..++..+......++||
T Consensus 274 ~--~~~~~~rg~~~~~~~~--~~-g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~li~~l~~~~~~~~IV 341 (997)
T 4a4z_A 274 G--RGGSNTRDGRGGRGNS--TR-GGANRGGSRGAGAIGSNK-------RKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341 (997)
T ss_dssp -------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEE
T ss_pred c--cccccccccccccccc--cc-cccccccccccccccccc-------cccccccccchhHHHHHHHHHHhCCCCCEEE
Confidence 0 0000000000000000 00 000000000000000000 0000000001112333444444455689999
Q ss_pred EEechhHHHHHHHHHHhcCC---------------------------------------cEEEEcCCCCHHHHHHHHHHH
Q psy5647 520 VSNYTQTLDLFERLSKLRGY---------------------------------------KYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 520 Fs~~~~~ld~l~~~L~~~g~---------------------------------------~~~~ldG~~~~~~R~~~v~~F 560 (755)
|+.+....+.+...|...|+ .+..++|+++..+|..+++.|
T Consensus 342 F~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F 421 (997)
T 4a4z_A 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILF 421 (997)
T ss_dssp ECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHH
Confidence 99999999988888876555 478999999999999999999
Q ss_pred ccCCCceEEEeecCCcccccccCCCCEEEEeCCCC---------CCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHH
Q psy5647 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW---------NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631 (755)
Q Consensus 561 n~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~~W---------Np~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI 631 (755)
+++... +|++|.+.+.|||+++ .+||+++.++ ++..+.|++||++|.|+.....+|.+...+..++..
T Consensus 422 ~~G~~k--VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~ 498 (997)
T 4a4z_A 422 SKGFIK--VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIAT 498 (997)
T ss_dssp HTTCCS--EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHH
T ss_pred HCCCCc--EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHH
Confidence 986654 7899999999999998 7888766665 899999999999999999888888888766666666
Q ss_pred HHHH
Q psy5647 632 MQRQ 635 (755)
Q Consensus 632 ~~r~ 635 (755)
+...
T Consensus 499 ~~~~ 502 (997)
T 4a4z_A 499 FKEV 502 (997)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=4.4e-22 Score=236.89 Aligned_cols=321 Identities=16% Similarity=0.123 Sum_probs=208.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHH-HHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMW-TLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~-~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.|+|||.+++..++ ..+..+|++.++|+|||+++...+. .+...+ .++|+++|. .|..+|.++
T Consensus 23 ~l~~~Q~~~i~~~~--------~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-------~~~l~i~P~raLa~q~~~~ 87 (720)
T 2zj8_A 23 SFYPPQAEALKSGI--------LEGKNALISIPTASGKTLIAEIAMVHRILTQG-------GKAVYIVPLKALAEEKFQE 87 (720)
T ss_dssp BCCHHHHHHHTTTG--------GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-------SEEEEECSSGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHh--------cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-------CEEEEEcCcHHHHHHHHHH
Confidence 78999999997622 2467899999999999999955444 444333 468999999 888999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhh--cCCccEEEEeCCcccCCCc--
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLH--KNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~--~~~~~lvIiDEaH~lKn~~-- 299 (755)
+.+|....+.+..+.|+...... . ....+|+|+|++.+......-. -..+++||+||+|.+....
T Consensus 88 ~~~l~~~g~~v~~~~G~~~~~~~-~----------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~ 156 (720)
T 2zj8_A 88 FQDWEKIGLRVAMATGDYDSKDE-W----------LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRG 156 (720)
T ss_dssp TGGGGGGTCCEEEECSCSSCCCG-G----------GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTH
T ss_pred HHHHHhcCCEEEEecCCCCcccc-c----------cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCccc
Confidence 97665534556666554322110 0 0135899999999865433211 1357899999999997532
Q ss_pred cHHHHHHHccc-cccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHHHHHHHHHHHHH
Q psy5647 300 SQTYQALMGLK-AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378 (755)
Q Consensus 300 s~~~~al~~l~-~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~~~~~~~~~~~L 378 (755)
......+..++ ..+.|+||||+- +..++... ++... |..
T Consensus 157 ~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~~---l~~~~----------~~~------------------------- 196 (720)
T 2zj8_A 157 ATLEVILAHMLGKAQIIGLSATIG--NPEELAEW---LNAEL----------IVS------------------------- 196 (720)
T ss_dssp HHHHHHHHHHBTTBEEEEEECCCS--CHHHHHHH---TTEEE----------EEC-------------------------
T ss_pred HHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHHH---hCCcc----------cCC-------------------------
Confidence 22333333443 577899999973 24443322 21100 000
Q ss_pred HHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHHHHHHHHhCChh
Q psy5647 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPD 458 (755)
Q Consensus 379 ~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Lrk~~nhp~ 458 (755)
..-|......+..... ++ ...+..
T Consensus 197 -----------------~~rp~~l~~~~~~~~~-----~~------------~~~~~~---------------------- 220 (720)
T 2zj8_A 197 -----------------DWRPVKLRRGVFYQGF-----VT------------WEDGSI---------------------- 220 (720)
T ss_dssp -----------------CCCSSEEEEEEEETTE-----EE------------ETTSCE----------------------
T ss_pred -----------------CCCCCcceEEEEeCCe-----ee------------ccccch----------------------
Confidence 0011111111111000 00 000000
Q ss_pred hhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-
Q psy5647 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR- 537 (755)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~- 537 (755)
.. ...+...+.+++ ..+.++|||++.....+.+...|...
T Consensus 221 ----------------------~~------------~~~~~~~~~~~~-----~~~~~~LVF~~sr~~~~~~a~~L~~~~ 261 (720)
T 2zj8_A 221 ----------------------DR------------FSSWEELVYDAI-----RKKKGALIFVNMRRKAERVALELSKKV 261 (720)
T ss_dssp ----------------------EE------------CSSTTHHHHHHH-----HTTCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred ----------------------hh------------hhHHHHHHHHHH-----hCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 00 000111122221 13678999999888877777666542
Q ss_pred --------------------------------CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCC
Q psy5647 538 --------------------------------GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA 585 (755)
Q Consensus 538 --------------------------------g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a 585 (755)
...+..++|+++.++|..+.+.|.++... +|++|.+++.|+|+++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~--vlvaT~~l~~Gvdip~~ 339 (720)
T 2zj8_A 262 KSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK--AVVATPTLSAGINTPAF 339 (720)
T ss_dssp GGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC--EEEECSTTGGGCCCCBS
T ss_pred HHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe--EEEECcHhhccCCCCce
Confidence 13488999999999999999999976544 67899999999999999
Q ss_pred CEEEE----eC----CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHH
Q psy5647 586 NRLVM----FD----PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629 (755)
Q Consensus 586 ~~vI~----~D----~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEE 629 (755)
+.||. || .+++++.+.|++||++|.|+.++-.+|.+.+....+.
T Consensus 340 ~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 340 RVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp EEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred EEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 98887 77 6899999999999999999988888999998887554
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=1.9e-21 Score=235.48 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=110.4
Q ss_pred cCCcHHHHHHHHHHHHHhhccc-----ccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchH
Q psy5647 145 NILRPHQREGVKFMYECVTGVR-----IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVK 218 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~-----~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~ 218 (755)
..+||||.+||..+.+++.... ...+.++++.+.||+|||++++.++. ++...+ ...++|||||. .|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~~----~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATELD----FIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTCT----TCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhcC----CCceEEEEeCcHHHHH
Confidence 4699999999999988653100 01246899999999999999977764 443221 23579999996 8889
Q ss_pred hHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh----hcCCccEEEEeCCcc
Q psy5647 219 NWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL----HKNEVGLVLCDEGHR 294 (755)
Q Consensus 219 nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l----~~~~~~lvIiDEaH~ 294 (755)
||.++|.+|.+..+ ..+.+.......+. . ...+|+|+|++.|....... ....+++||+|||||
T Consensus 345 Q~~~~f~~f~~~~v----~~~~s~~~l~~~L~----~----~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr 412 (1038)
T 2w00_A 345 QTMKEYQRFSPDSV----NGSENTAGLKRNLD----K----DDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR 412 (1038)
T ss_dssp HHHHHHHTTSTTCS----SSSCCCHHHHHHHH----C----SSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT
T ss_pred HHHHHHHHhccccc----ccccCHHHHHHHhc----C----CCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch
Confidence 99999999876521 12222333222221 1 23589999999998654321 112688999999999
Q ss_pred cCCCccHHHHHH-HccccccEEEeecCCCcC
Q psy5647 295 LKNCESQTYQAL-MGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 295 lKn~~s~~~~al-~~l~~~~rllLTGTPiqN 324 (755)
.... ..++.+ ..++...+++|||||+..
T Consensus 413 s~~~--~~~~~I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 413 SQFG--EAQKNLKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp THHH--HHHHHHHHHCSSEEEEEEESSCCCS
T ss_pred hcch--HHHHHHHHhCCcccEEEEeCCcccc
Confidence 7532 234444 445678899999999864
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.85 E-value=1.1e-19 Score=222.99 Aligned_cols=278 Identities=17% Similarity=0.162 Sum_probs=186.7
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...+.|+|.+++..+. .+..+|+..++|+|||+.++..+...+..+ .++|||+|. .|+.|+.+
T Consensus 76 gf~pt~iQ~~ai~~il---------~g~dvlv~ApTGSGKTl~~l~~il~~~~~~-------~~~Lil~PtreLa~Q~~~ 139 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIV---------QGKSFTMVAPTGVGKTTFGMMTALWLARKG-------KKSALVFPTVTLVKQTLE 139 (1104)
T ss_dssp SSCCCHHHHHHHHHHT---------TTCCEEECCSTTCCHHHHHHHHHHHHHTTT-------CCEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---------cCCCEEEEeCCCCcHHHHHHHHHHHHHhcC-------CeEEEEechHHHHHHHHH
Confidence 3478999999998773 356899999999999997766666655333 358999999 78899999
Q ss_pred HHHHHhCCCceEEEecCCCHH-HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc--
Q psy5647 223 EITKWLGGRVAALPIDGGSKA-EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE-- 299 (755)
Q Consensus 223 E~~kw~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~-- 299 (755)
.+.++....+.+..+.|+... +....+..+.. ...+|+|+|++.+..+...+....+++||+||||.+....
T Consensus 140 ~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~-----g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~ 214 (1104)
T 4ddu_A 140 RLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE-----DDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN 214 (1104)
T ss_dssp HHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT-----SCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHH
T ss_pred HHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC-----CCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccccc
Confidence 999976445677777776543 22222222211 2368999999999877766666789999999999864321
Q ss_pred -----------cH-HHHHHHcc------------ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCcc
Q psy5647 300 -----------SQ-TYQALMGL------------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355 (755)
Q Consensus 300 -----------s~-~~~al~~l------------~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi 355 (755)
.. ....+..+ .....+++||||....+.+.+ ...+.. +
T Consensus 215 ~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~-----------------~~~~l~-i 276 (1104)
T 4ddu_A 215 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL-----------------FRDLLN-F 276 (1104)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH-----------------HHHHTC-C
T ss_pred chhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH-----------------hhccee-E
Confidence 11 22333322 345779999998665433211 000000 0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhHhHHHHhcchhHhhccC-CCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCC
Q psy5647 356 LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYL-PVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGG 434 (755)
Q Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~L-P~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~ 434 (755)
. +.. ... +....+.+ +..
T Consensus 277 ~------------------------------v~~------~~~~~~~i~~~~-~~~------------------------ 295 (1104)
T 4ddu_A 277 T------------------------------VGR------LVSVARNITHVR-ISS------------------------ 295 (1104)
T ss_dssp C------------------------------CCB------CCCCCCCEEEEE-ESC------------------------
T ss_pred E------------------------------ecc------CCCCcCCceeEE-Eec------------------------
Confidence 0 000 000 00000000 000
Q ss_pred CcccccccHHHHHHHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCC
Q psy5647 435 ENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTD 514 (755)
Q Consensus 435 ~~~~~~~~~l~~i~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~ 514 (755)
.|...|..++... +
T Consensus 296 --------------------------------------------------------------~k~~~L~~ll~~~----~ 309 (1104)
T 4ddu_A 296 --------------------------------------------------------------RSKEKLVELLEIF----R 309 (1104)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHH----C
T ss_pred --------------------------------------------------------------CHHHHHHHHHHhc----C
Confidence 1222233344331 4
Q ss_pred CEEEEEEechhHHHHHHHHHHhcCCcEE-EEcCCCCHHHHHHHHHHHccCCCceEEEee----cCCcccccccCC-CCEE
Q psy5647 515 DKIVLVSNYTQTLDLFERLSKLRGYKYV-RLDGSMTIKKRAKVVETFNKTSNEFIFMLS----SKAGGCGLNLIG-ANRL 588 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~l~~~L~~~g~~~~-~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS----t~agg~GLNL~~-a~~v 588 (755)
.++|||++.....+.+...|...|+.+. .++| +|.+ ++.|+++... +|++ |.+++.|||+++ ++.|
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~--VLVatas~TdvlarGIDip~~V~~V 381 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKIN--ILIGVQAYYGKLTRGVDLPERIKYV 381 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCS--EEEEETTTHHHHCCSCCCTTTCCEE
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCC--EEEEecCCCCeeEecCcCCCCCCEE
Confidence 7999999999999999999999999998 9998 3555 9999986655 5666 999999999999 9999
Q ss_pred EEeCCCC
Q psy5647 589 VMFDPDW 595 (755)
Q Consensus 589 I~~D~~W 595 (755)
|+||+|-
T Consensus 382 I~~d~P~ 388 (1104)
T 4ddu_A 382 IFWGTPS 388 (1104)
T ss_dssp EEESCCE
T ss_pred EEECCCC
Confidence 9999998
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.80 E-value=9.2e-19 Score=214.97 Aligned_cols=316 Identities=14% Similarity=0.106 Sum_probs=199.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.+ |+|.+++..+. .+..+|+..++|+|||+.++.++..+...+ .++|||+|. .|..|+.+++
T Consensus 57 ~p-~iQ~~ai~~il---------~g~dvlv~apTGSGKTl~~lp~l~~~~~~~-------~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 57 PR-AIQKMWAKRIL---------RKESFAATAPTGVGKTSFGLAMSLFLALKG-------KRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp CC-HHHHHHHHHHH---------TTCCEECCCCBTSCSHHHHHHHHHHHHTTS-------CCEEEEESCHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHH---------hCCCEEEEcCCCCCHHHHHHHHHHHHhhcC-------CeEEEEeccHHHHHHHHHHH
Confidence 47 99999998774 356899999999999985555555554433 358999999 7889999999
Q ss_pred HHHhCC-Cc----eEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 225 TKWLGG-RV----AALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 225 ~kw~~~-~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
.+++.. .+ .+..+.|+.............. . .+|+|+|++.+..+...+. .+++||+||||++-+..
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~-----~-~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~ 191 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR-----N-FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKAS 191 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG-----G-CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTST
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhcc-----C-CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhcc
Confidence 999864 34 5666666654332211111111 1 5899999999987766543 78999999999987744
Q ss_pred cHHHHHHHcc------------ccccEEEeecCCCcCCHHHHHHhhhhhcCCCCCChHHHHHhccCccccCCCCCCCHHH
Q psy5647 300 SQTYQALMGL------------KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAE 367 (755)
Q Consensus 300 s~~~~al~~l------------~~~~rllLTGTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~g~~~~~~~~~ 367 (755)
......+..+ .....+++|+|+-.. .++. ..|...+..
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~~~-------------- 241 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQLLN-------------- 241 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHHHC--------------
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcceE--------------
Confidence 3333333333 224468888886443 1100 000000000
Q ss_pred HHHHHHHHHHHHHhHhHHHHhcchhHhhccCCCceEEEEEEcCCHHHHHHHHHHHhhHHHHHHHcCCCcccccccHHHHH
Q psy5647 368 RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSI 447 (755)
Q Consensus 368 ~~~~~~~~~~L~~~l~~~~lRRt~~~v~~~LP~k~e~vv~~~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 447 (755)
+.+. ....+.......++.
T Consensus 242 -----------------i~v~------~~~~~~~~i~~~~~~-------------------------------------- 260 (1054)
T 1gku_B 242 -----------------FDIG------SSRITVRNVEDVAVN-------------------------------------- 260 (1054)
T ss_dssp -----------------CCCS------CCEECCCCEEEEEES--------------------------------------
T ss_pred -----------------EEcc------CcccCcCCceEEEec--------------------------------------
Confidence 0000 000000000000000
Q ss_pred HHHHHHhCChhhhhhhhhcCccchhhhhhhCCccccccccchhhhHHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHH
Q psy5647 448 TSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTL 527 (755)
Q Consensus 448 ~~Lrk~~nhp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~l 527 (755)
..|...|..++. ..+.++|||++.....
T Consensus 261 ------------------------------------------------~~k~~~L~~ll~----~~~~~~LVF~~t~~~a 288 (1054)
T 1gku_B 261 ------------------------------------------------DESISTLSSILE----KLGTGGIIYARTGEEA 288 (1054)
T ss_dssp ------------------------------------------------CCCTTTTHHHHT----TSCSCEEEEESSHHHH
T ss_pred ------------------------------------------------hhHHHHHHHHHh----hcCCCEEEEEcCHHHH
Confidence 011111222222 1257899999999999
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee----cCCcccccccCCC-CEEEEeCCC--------
Q psy5647 528 DLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS----SKAGGCGLNLIGA-NRLVMFDPD-------- 594 (755)
Q Consensus 528 d~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS----t~agg~GLNL~~a-~~vI~~D~~-------- 594 (755)
+.+...|+.. +++..++|++ .++++.|.++... +|++ |.++++|||++++ +.||++|+|
T Consensus 289 ~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~--VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~ 360 (1054)
T 1gku_B 289 EEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEID--HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIED 360 (1054)
T ss_dssp HHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCS--EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSC
T ss_pred HHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCc--EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccc
Confidence 9999999888 9999999997 3788999986554 4555 8999999999995 999999999
Q ss_pred ---------------------------------------------------------------CCCCcHHHHhHhhhccC
Q psy5647 595 ---------------------------------------------------------------WNPANDDQAMARVWRDG 611 (755)
Q Consensus 595 ---------------------------------------------------------------WNp~~~~Qa~gR~~R~G 611 (755)
.++..|.|++||++|.|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g 440 (1054)
T 1gku_B 361 IDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLF 440 (1054)
T ss_dssp GGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEE
T ss_pred cccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhcc
Confidence 78899999999999987
Q ss_pred CCC--cEEEEEEeeCCCHHHHHHHHHHHHHHh
Q psy5647 612 QKK--PCFVYRFLSTGSIEEKMMQRQAHKKAL 641 (755)
Q Consensus 612 Q~k--~V~Vyrlv~~gTiEEkI~~r~~~K~~l 641 (755)
... .+..| +..+ |++++.....+...
T Consensus 441 ~~g~~~g~~~--~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 441 AGGLTKGASF--LLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp TTEECCEEEE--EECS--CHHHHHHHHHHHHT
T ss_pred CCCCceEEEE--EEec--CHHHHHHHHHHHhh
Confidence 763 34443 3333 45566665555554
No 46
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=3.2e-19 Score=187.77 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=121.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|+|||.+++.+++.. .++||+++||+|||+++++++..++..+. .++|||||. +|+.||.++
T Consensus 112 ~~l~~~Q~~ai~~~l~~---------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------~~~lil~Pt~~L~~q~~~~ 176 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN---------RRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTALTTQMADD 176 (282)
T ss_dssp CCCCHHHHHHHHHHHHH---------SEEEECCCTTSCHHHHHHHHHHHHHHHCS------SEEEEECSSHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc---------CCeEEEcCCCCCcHHHHHHHHHHHHHcCC------CeEEEEECCHHHHHHHHHH
Confidence 48999999999987652 45789999999999999998887765432 369999998 889999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHH
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~ 302 (755)
+.+|... ...+..+.++..... ......+|+|+||+.+....... ...+++||+||||++.+. ..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~ 242 (282)
T 1rif_A 177 FVDYRLFSHAMIKKIGGGASKDD-----------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SI 242 (282)
T ss_dssp HHHHTSCCGGGEEECSTTCSSTT-----------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HH
T ss_pred HHHhcccccceEEEEeCCCcchh-----------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cH
Confidence 9999753 344555555432210 11134689999999987764432 236899999999999853 34
Q ss_pred HHHHHcc-ccccEEEeecCCCcCCHHHHHHhhhhhcC
Q psy5647 303 YQALMGL-KAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338 (755)
Q Consensus 303 ~~al~~l-~~~~rllLTGTPiqN~l~El~sll~fl~p 338 (755)
...+..+ .+.++++|||||..+ ..+++.++.++.|
T Consensus 243 ~~il~~~~~~~~~l~lSATp~~~-~~~~~~l~~l~g~ 278 (282)
T 1rif_A 243 SSIISGLNNCMFKFGLSGSLRDG-KANIMQYVGMFGE 278 (282)
T ss_dssp HHHTTTCTTCCEEEEECSSCCTT-STTHHHHHHHHCE
T ss_pred HHHHHHhhcCCeEEEEeCCCCCc-chHHHHHHHhcCC
Confidence 4445555 688999999999644 4677777777655
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.75 E-value=4.2e-18 Score=190.08 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=84.4
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCE------
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANR------ 587 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~------ 587 (755)
+.+++||++.....+.+.+.|+..|+++..++|. +|.++++.|.++... +|++|.+.+.|+|++ ..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~--vLVaT~v~e~GiDip-~~~VI~~g~ 243 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD--FVITTDISEMGANFK-ADRVIDPRK 243 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS--EEEECGGGGTSCCCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe--EEEECchHHcCcccC-CcEEEecCc
Confidence 5689999999999999999999999999999997 578899999986554 789999999999998 555
Q ss_pred -----------EEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 588 -----------LVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 588 -----------vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
+|+++.+.+++.+.|++||++|.|....+
T Consensus 244 ~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 244 TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp EEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred cccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 56788999999999999999999965443
No 48
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=2.1e-17 Score=159.20 Aligned_cols=133 Identities=14% Similarity=0.281 Sum_probs=114.2
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|..++... .+.++|||+++....+.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+
T Consensus 19 ~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vlv~T~ 93 (163)
T 2hjv_A 19 EENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR--YLVATD 93 (163)
T ss_dssp GGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECG
T ss_pred hHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEECC
Confidence 467888888888764 467999999999999999999999999999999999999999999999986544 678999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCHHHHHHHHHH
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTiEEkI~~r~~ 636 (755)
++++|+|++.++.||+||+|||+..+.|++||++|.|+...+ |.|++.. |...+....
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIE 151 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHH
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999987654 4456544 444444433
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.72 E-value=9.1e-18 Score=188.52 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=84.2
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeC-
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFD- 592 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D- 592 (755)
+.++|||++.....+.+...|+..|+.+..++|.+ ++++++.|.++... +|++|.+.+.|||++. +.||.||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~--vLVaT~v~~~GiDip~-~~VI~~~~ 260 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD--FVVTTDISEMGANFRA-GRVIDPRR 260 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS--EEEECGGGGSSCCCCC-SEEEECCE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce--EEEECCHHHhCcCCCC-CEEEECCC
Confidence 56999999999999999999999999999999975 46789999876554 7899999999999999 9999998
Q ss_pred -------------------CCCCCCcHHHHhHhhhccCCC
Q psy5647 593 -------------------PDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 593 -------------------~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
.+.++..+.|++||++|.|..
T Consensus 261 ~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 261 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 889999999999999999973
No 50
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=2.3e-17 Score=160.30 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=109.2
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|..++... .+.++|||+++....+.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEESS
T ss_pred hHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc--EEEECC
Confidence 356888888888754 467999999999999999999999999999999999999999999999976554 678999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~ 624 (755)
++++|+|++.++.||+||+|||+..+.|++||++|.|+...+. .|++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~--~~~~~ 137 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSD 137 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEE--EEECS
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEE--EEEcC
Confidence 9999999999999999999999999999999999999876544 34543
No 51
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.72 E-value=4.3e-17 Score=166.92 Aligned_cols=141 Identities=23% Similarity=0.244 Sum_probs=105.8
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|+|||.+++..+.+ +..+|++++||+|||+++++++..+ ..++|||||. .|+.||.+
T Consensus 91 ~~~l~~~Q~~ai~~~~~---------~~~~ll~~~tG~GKT~~a~~~~~~~----------~~~~liv~P~~~L~~q~~~ 151 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV---------DKRGCIVLPTGSGKTHVAMAAINEL----------STPTLIVVPTLALAEQWKE 151 (237)
T ss_dssp CCCCCHHHHHHHHHHTT---------TSEEEEEESSSTTHHHHHHHHHHHS----------CSCEEEEESSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh---------CCCEEEEeCCCCCHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHH
Confidence 35899999999997642 3458999999999999999887653 1458999999 88899999
Q ss_pred HHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccH
Q psy5647 223 EITKWLGGRVA-ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301 (755)
Q Consensus 223 E~~kw~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~ 301 (755)
++.+| + +. +..+.++.. ...+|+|+||+.+......+. ..|++||+||||++.+..
T Consensus 152 ~~~~~-~--~~~v~~~~g~~~-----------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~-- 208 (237)
T 2fz4_A 152 RLGIF-G--EEYVGEFSGRIK-----------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES-- 208 (237)
T ss_dssp HHGGG-C--GGGEEEESSSCB-----------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--
T ss_pred HHHhC-C--CCeEEEEeCCCC-----------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--
Confidence 99994 4 33 445555432 134799999999987766543 469999999999997743
Q ss_pred HHHHHHccccccEEEeecCCCcCCH
Q psy5647 302 TYQALMGLKAKRRVLLSGTPIQNDL 326 (755)
Q Consensus 302 ~~~al~~l~~~~rllLTGTPiqN~l 326 (755)
..+.+..+...++++|||||..++-
T Consensus 209 ~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 209 YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp HHHHHHTCCCSEEEEEEESCC----
T ss_pred HHHHHHhccCCEEEEEecCCCCCCC
Confidence 2334455688999999999998764
No 52
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=2.4e-17 Score=184.33 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=76.8
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE---
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM--- 590 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~--- 590 (755)
+.+++||++.....+.+.+.|+..|+++..++| ++|.++++.|.++... +|++|.+.+.|||++ ++.||.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~--vLVaT~v~e~GiDip-v~~VI~~g~ 249 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD--FILATDIAEMGANLC-VERVLDCRT 249 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS--EEEESSSTTCCTTCC-CSEEEECCE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce--EEEECChhheeeccC-ceEEEeCCc
Confidence 679999999999999999999999999999999 3688999999986554 789999999999999 999985
Q ss_pred ----------------eCCCCCCCcHHHHhHhhhccCCC
Q psy5647 591 ----------------FDPDWNPANDDQAMARVWRDGQK 613 (755)
Q Consensus 591 ----------------~D~~WNp~~~~Qa~gR~~R~GQ~ 613 (755)
+|.+.+++.+.|++||++|.|..
T Consensus 250 ~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 288 (440)
T 1yks_A 250 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 288 (440)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cceeeecccccceeeccccccCHHHHHHhccccCCCCCC
Confidence 89999999999999999998543
No 53
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=162.41 Aligned_cols=125 Identities=16% Similarity=0.245 Sum_probs=96.8
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|.+++.... .+.|+|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+
T Consensus 29 ~~~K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vLvaT~ 104 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATA 104 (185)
T ss_dssp GGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS--EEEEEC
T ss_pred cHHHHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEcC
Confidence 4678888888887642 478999999999999999999999999999999999999999999999986554 678999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
++++|+|++.++.||+||++||+..+.|++||++|.|++.. ++.|++..
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 99999999999999999999999999999999999997654 45566544
No 54
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=9.7e-17 Score=154.80 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 497 AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 497 ~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
.|+..|..++... .+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|.++
T Consensus 16 ~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEEGGG
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE--EEEEcChh
Confidence 3888888888764 468999999999999999999999999999999999999999999999976554 67899999
Q ss_pred ccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 577 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 577 g~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
++|+|++.++.||+||++||+..+.|++||++|.|+...| |.|++....
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 9999999999999999999999999999999999976644 556776654
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.69 E-value=4.6e-17 Score=183.12 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=87.1
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE---
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM--- 590 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~--- 590 (755)
+.++|||++.....+.+...|+..|+.+..++|. +|.++++.|.++... +|++|.+++.|||+++ +.||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~--iLVaT~v~~~GiDip~-~~VI~~G~ 262 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFGA-SRVIDCRK 262 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS--EEEESSCC---CCCSC-SEEEECCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce--EEEECChHHhCeecCC-CEEEECCc
Confidence 5799999999999999999999999999999995 678889999876544 7899999999999998 99988
Q ss_pred -----------------eCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 591 -----------------FDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 591 -----------------~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
||++.+++.+.|++||++|.|.... ..|.|++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 263 SVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp ECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred ccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 8899999999999999999996332 345566664
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.69 E-value=8.7e-17 Score=187.79 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEE--
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVM-- 590 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~-- 590 (755)
.+.++|||++.....+.+...|+..|+++..++|. +|.++++.|.++... +|++|.+.+.|||++ +++||.
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~--VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS--EEEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce--EEEECchhhcceeeC-CcEEEECC
Confidence 36799999999999999999999999999999994 789999999976554 789999999999999 999997
Q ss_pred ------------------eCCCCCCCcHHHHhHhhhccCCCC
Q psy5647 591 ------------------FDPDWNPANDDQAMARVWRDGQKK 614 (755)
Q Consensus 591 ------------------~D~~WNp~~~~Qa~gR~~R~GQ~k 614 (755)
||.+.+++.+.|++||++|.|..+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 667888899999999999994333
No 57
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=158.57 Aligned_cols=123 Identities=17% Similarity=0.287 Sum_probs=104.7
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|.+++.. .+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD--VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS--EEEECH
T ss_pred hHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE--EEEEcC
Confidence 35677777666643 356999999999999999999999999999999999999999999999986544 678999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
++++|+|++.++.||+||++||+..+.|++||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997644 4456554
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.67 E-value=5.5e-15 Score=188.00 Aligned_cols=163 Identities=14% Similarity=0.222 Sum_probs=107.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..+.|.|.+++.-++ ..+.+++++.++|+|||+.+...+...+.+.+. .++|+|+|. +|..|-.++
T Consensus 925 ~~fnpiQ~q~~~~l~--------~~~~nvlv~APTGSGKTliaelail~~l~~~~~-----~kavyi~P~raLa~q~~~~ 991 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY--------NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-----GRCVYITPMEALAEQVYMD 991 (1724)
T ss_dssp SBCCHHHHHHHHHHH--------SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTT-----CCEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh--------cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCC-----CEEEEEcChHHHHHHHHHH
Confidence 357899999998876 356789999999999999988777766665432 358999999 777777777
Q ss_pred HHHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhc----CCccEEEEeCCcccCC
Q psy5647 224 ITKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK----NEVGLVLCDEGHRLKN 297 (755)
Q Consensus 224 ~~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~----~~~~lvIiDEaH~lKn 297 (755)
+.+.++. .+.+..+.|+...+.. .+. ..+|+|+|+|.+......... ...++||+||+|.+..
T Consensus 992 ~~~~f~~~~g~~V~~ltGd~~~~~~-~~~----------~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 992 WYEKFQDRLNKKVVLLTGETSTDLK-LLG----------KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHTTTSCCCEEECCSCHHHHHH-HHH----------HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHhchhcCCEEEEEECCCCcchh-hcC----------CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 7765543 3556666665433221 111 247999999987543322111 2578999999999976
Q ss_pred CccHHHHH-HHc-------c-ccccEEEeecCCCcCCHHHHHHhh
Q psy5647 298 CESQTYQA-LMG-------L-KAKRRVLLSGTPIQNDLLEYFSLV 333 (755)
Q Consensus 298 ~~s~~~~a-l~~-------l-~~~~rllLTGTPiqN~l~El~sll 333 (755)
........ +.. + +..+.|+||||- .|..|+...+
T Consensus 1061 ~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL 1103 (1724)
T 4f92_B 1061 ENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWL 1103 (1724)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHh
Confidence 43322222 111 2 234679999994 3456654433
No 59
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.67 E-value=1.5e-15 Score=176.71 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=97.2
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
...|+..|..++.... ..+.++||||++....+.|...|...|+++..++|.+...+|..+...|+. . -++++|.
T Consensus 414 ~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g--~VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--G--AVTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--T--CEEEEET
T ss_pred HHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--C--eEEEeCC
Confidence 4568877777766543 236789999999999999999999999999999999877777544444443 2 2689999
Q ss_pred CcccccccC--------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCc
Q psy5647 575 AGGCGLNLI--------GANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 575 agg~GLNL~--------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
.+|.|+|+. +..+||.||.|-++..|.|++||++|.|.+-.
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 999999998 88899999999999999999999999997643
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.65 E-value=6.2e-16 Score=179.39 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=87.8
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEE-----
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRL----- 588 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~v----- 588 (755)
+.++|||++.....+.+.+.|+..|+++..++|. +|.++++.|.++... +|++|.+++.|||+. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~--VLVaTdv~~rGiDi~-v~~VId~g~ 427 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD--FVVTTDISEMGANFR-AGRVIDPRR 427 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS--EEEECGGGGTTCCCC-CSEEEECCE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE--EEEECcHHHcCcccC-ceEEEECcc
Confidence 5699999999999999999999999999999995 788899999876554 789999999999996 8888
Q ss_pred ---------------EEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEee
Q psy5647 589 ---------------VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623 (755)
Q Consensus 589 ---------------I~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~ 623 (755)
|+||.|-+++.+.|++||++|.|..+.. .|.|++
T Consensus 428 ~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 428 CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred eecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 6677788888999999999999864433 455665
No 61
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.64 E-value=4.4e-15 Score=173.01 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred EEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeCC----
Q psy5647 518 VLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP---- 593 (755)
Q Consensus 518 lIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D~---- 593 (755)
+||+......+.+...|...|+.+..++|+++..+|.++.+.|+++.+..-+|++|.+++.|||+ .+++||+++.
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 77788899999999999999999999999999999999999999833333478999999999999 9999999999
Q ss_pred ----------CCCCCcHHHHhHhhhccCCC-CcEEEEEEeeC
Q psy5647 594 ----------DWNPANDDQAMARVWRDGQK-KPCFVYRFLST 624 (755)
Q Consensus 594 ----------~WNp~~~~Qa~gR~~R~GQ~-k~V~Vyrlv~~ 624 (755)
+++++.+.|++||++|.|+. .+-.+|++...
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 45667766544
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.64 E-value=1.1e-14 Score=169.12 Aligned_cols=117 Identities=12% Similarity=0.111 Sum_probs=99.6
Q ss_pred HhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec
Q psy5647 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573 (755)
Q Consensus 494 ~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt 573 (755)
....|+..|...+.... ..+.+|||||++....+.|...|...|+++..++|.....+|.-+.+.|+.+ -++++|
T Consensus 422 ~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G----~VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA----AVTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT----CEEEEE
T ss_pred CHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC----eEEEec
Confidence 44678888877776554 3478999999999999999999999999999999998777776666777654 278999
Q ss_pred CCcccccccCCC-------------------------------------CEEEEeCCCCCCCcHHHHhHhhhccCCCCc
Q psy5647 574 KAGGCGLNLIGA-------------------------------------NRLVMFDPDWNPANDDQAMARVWRDGQKKP 615 (755)
Q Consensus 574 ~agg~GLNL~~a-------------------------------------~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~ 615 (755)
..+|.|+|+... .+||.+|.|-++..|.|++||++|.|..-.
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 999999999753 599999999999999999999999998644
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.64 E-value=1.9e-16 Score=188.27 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=95.2
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHh-----------cCCcEEEEcCCCCHHHHHHHHHHHcc---CCCceEEEeecCCcc
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKL-----------RGYKYVRLDGSMTIKKRAKVVETFNK---TSNEFIFMLSSKAGG 577 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~-----------~g~~~~~ldG~~~~~~R~~~v~~Fn~---~~~~~v~LlSt~agg 577 (755)
..+.++|||++.....+.+...|.. .++.+..++|+++.++|.++++.|.. +.+..-+|++|.+++
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae 380 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAE 380 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHH
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHH
Confidence 3467999999999999988888874 57889999999999999999999971 133445789999999
Q ss_pred cccccCCCCEEEEeCC------------------CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 578 CGLNLIGANRLVMFDP------------------DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 578 ~GLNL~~a~~vI~~D~------------------~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
.|||+.+.+.||.++. +.+.+.+.|+.||++|. ++-.+|+|++....
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 9999999999999666 78899999999999998 45567888865544
No 64
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=158.90 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=103.4
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHh-H
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKN-W 220 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~n-W 220 (755)
....|+|||.+++..+.+ +.++|+..++|+|||++++.++..++....... ...++|||||. .++.| |
T Consensus 30 ~~~~l~~~Q~~~i~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~lil~p~~~L~~q~~ 99 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALE---------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS-EPGKVIVLVNKVLLVEQLF 99 (216)
T ss_dssp CCCCCCHHHHHHHHHHHT---------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT-CCCCEEEEESSHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhc---------CCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc-CCCcEEEEECHHHHHHHHH
Confidence 345899999999998752 467999999999999999998877665422100 12468999999 67788 9
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--------hhcCCccEEEEeCC
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--------LHKNEVGLVLCDEG 292 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--------l~~~~~~lvIiDEa 292 (755)
.+++.+|.+..+.+..+.|+...... ...... ..+|+|+||+.+...... +....+++||+|||
T Consensus 100 ~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 100 RKEFQPFLKKWYRVIGLSGDTQLKIS--FPEVVK------SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171 (216)
T ss_dssp HHTHHHHHTTTSCEEECCC---CCCC--HHHHHH------HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC
T ss_pred HHHHHHHhccCceEEEEeCCcccchh--HHhhcc------CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECc
Confidence 99999998876666666665322110 011111 147999999999765543 22346899999999
Q ss_pred cccCCCccH--HHHHH-Hcc--------------ccccEEEeecC
Q psy5647 293 HRLKNCESQ--TYQAL-MGL--------------KAKRRVLLSGT 320 (755)
Q Consensus 293 H~lKn~~s~--~~~al-~~l--------------~~~~rllLTGT 320 (755)
|++...... ....+ ... ...++++||||
T Consensus 172 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 172 HHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 999643221 11111 111 34678999998
No 65
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=147.70 Aligned_cols=124 Identities=15% Similarity=0.242 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
..|+..|..++.. ..+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|.+
T Consensus 19 ~~K~~~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~--vLvaT~~ 93 (175)
T 2rb4_A 19 KDKYQALCNIYGS---ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK--VLITTNV 93 (175)
T ss_dssp HHHHHHHHHHHTT---SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS--EEEECCS
T ss_pred HhHHHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEecc
Confidence 3477777777654 3468999999999999999999999999999999999999999999999976544 6889999
Q ss_pred cccccccCCCCEEEEeCCC------CCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 576 GGCGLNLIGANRLVMFDPD------WNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~~------WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
+++|+|++.++.||+||+| +++..+.|++||++|.|+. -.+|.|++.+.
T Consensus 94 ~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 94 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 9999999999999999999 5567899999999999965 45667777665
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.64 E-value=1.5e-14 Score=184.11 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=107.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC----CCCCCCeEEEEeCC-cchHh
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL----AKPLIDKAIIVAPS-SLVKN 219 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~----~~p~~~~~LIV~P~-sll~n 219 (755)
..|.|.|..++..++ ..+.+.+++.++|+|||+.|...+...+.+... ......++|+|+|. +|..+
T Consensus 78 ~~ln~iQs~~~~~al--------~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e 149 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL--------ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 149 (1724)
T ss_dssp SBCCHHHHHTHHHHH--------TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHH
Confidence 468899999988765 356789999999999999987766655543221 11123579999999 77788
Q ss_pred HHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhh----hcCCccEEEEeCCcc
Q psy5647 220 WCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVL----HKNEVGLVLCDEGHR 294 (755)
Q Consensus 220 W~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l----~~~~~~lvIiDEaH~ 294 (755)
=.++|.+.+.. .+.+..+.|+...... .....+|+|+|+|.+....... .-....+||+||+|.
T Consensus 150 ~~~~l~~~~~~~gi~V~~~tGd~~~~~~-----------~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~ 218 (1724)
T 4f92_B 150 MVGSFGKRLATYGITVAELTGDHQLCKE-----------EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL 218 (1724)
T ss_dssp HHHHHHHHHTTTTCCEEECCSSCSSCCT-----------TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCcc-----------ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh
Confidence 88888877654 4566666665322110 0123589999999875432111 113578999999999
Q ss_pred cCCCccHHHHH-HH-------cc-ccccEEEeecCCCcCCHHHHHH
Q psy5647 295 LKNCESQTYQA-LM-------GL-KAKRRVLLSGTPIQNDLLEYFS 331 (755)
Q Consensus 295 lKn~~s~~~~a-l~-------~l-~~~~rllLTGTPiqN~l~El~s 331 (755)
+.......... +. .. ...++|+||||- .|+.|+..
T Consensus 219 l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 219 LHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp GGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 86532111111 11 11 234689999994 34555543
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.64 E-value=1.8e-14 Score=167.43 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=96.6
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
...|+..+...+.... ..+.+|||||++....+.|...|...|+++..|+|.....++.-+.+.|+.+ -++++|.
T Consensus 442 ~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G----~VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG----GVTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT----CEEEEET
T ss_pred HHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC----eEEEecc
Confidence 4568877777666543 2477999999999999999999999999999999998766665555666543 2689999
Q ss_pred CcccccccCCC----------------------------------------------------CEEEEeCCCCCCCcHHH
Q psy5647 575 AGGCGLNLIGA----------------------------------------------------NRLVMFDPDWNPANDDQ 602 (755)
Q Consensus 575 agg~GLNL~~a----------------------------------------------------~~vI~~D~~WNp~~~~Q 602 (755)
.+|.|+|+... .+||.+|.+-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999743 49999999999999999
Q ss_pred HhHhhhccCCCCc
Q psy5647 603 AMARVWRDGQKKP 615 (755)
Q Consensus 603 a~gR~~R~GQ~k~ 615 (755)
++||++|.|..-.
T Consensus 597 r~GRTGRqGdpG~ 609 (922)
T 1nkt_A 597 LRGRSGRQGDPGE 609 (922)
T ss_dssp HHHTSSGGGCCEE
T ss_pred HhcccccCCCCee
Confidence 9999999997643
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.63 E-value=4.8e-15 Score=147.90 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=111.8
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++.+|+..++|+|||++++..+...+...... ....++|||||. .++.||.++
T Consensus 22 ~~~~~~Q~~~i~~~~---------~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~-~~~~~~lil~P~~~L~~q~~~~ 91 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL---------EGKDLIGQARTGTGKTLAFALPIAERLAPSQER-GRKPRALVLTPTRELALQVASE 91 (207)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCT-TCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc---------CCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCcEEEEECCHHHHHHHHHH
Confidence 378999999999874 346799999999999999777665554332111 112469999999 888999999
Q ss_pred HHHHhCCCceEEEecCCCHHH-HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCC--
Q psy5647 224 ITKWLGGRVAALPIDGGSKAE-IDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNC-- 298 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~-- 298 (755)
+.++.+. +.+..+.|+.... ....+. ...+|+|+|++.+...... +....+++||+||||++.+.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 92 LTAVAPH-LKVVAVYGGTGYGKQKEALL---------RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHCTT-SCEEEECSSSCSHHHHHHHH---------HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHhhc-ceEEEEECCCChHHHHHHhh---------CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccch
Confidence 9999876 5555555554322 111111 1357999999998765432 33356899999999998543
Q ss_pred ccHHHHHHHccc-cccEEEeecCCCcCCHHHH
Q psy5647 299 ESQTYQALMGLK-AKRRVLLSGTPIQNDLLEY 329 (755)
Q Consensus 299 ~s~~~~al~~l~-~~~rllLTGTPiqN~l~El 329 (755)
.......+..+. ..+.+++|||+- +++.++
T Consensus 162 ~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 162 EEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp HHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred HHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 233344444443 456899999983 334433
No 69
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.43 E-value=2.4e-17 Score=159.96 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=106.0
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
+.|+..|..++.. ..+.++|||+++...++.+...|...|+.+..++|+++..+|.++++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~--vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN--VLVATDV 89 (170)
Confidence 5677777777765 3467999999999999999999999999999999999999999999999975443 7899999
Q ss_pred cccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEE
Q psy5647 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~V 618 (755)
+++|+|++.++.||+||++||+..+.|++||++|.||+..|.+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 9999999999999999999999999999999999999776543
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=4.1e-15 Score=150.15 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|||.+++..+.+ +..+|+..++|+|||+.++..+...+.... ...++|||||. .|+.||.+++
T Consensus 36 ~~~~~Q~~~i~~~~~---------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~~ 102 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL---------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT----GQVSVLVMCHTRELAFQISKEY 102 (220)
T ss_dssp CCCHHHHHHHHHHHT---------TCCEEEECCTTSCHHHHHHHHHHHHCCCCT----TCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCCchhhhhhHHHHHhhhccC----CCEEEEEEeCCHHHHHHHHHHH
Confidence 589999999988753 457999999999999998887766553322 12368999999 8889999999
Q ss_pred HHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
.++... .+.+..+.|+...... ...+.. ...+|+|+|++.+...... +....+++||+||||++....
T Consensus 103 ~~~~~~~~~~~v~~~~g~~~~~~~--~~~~~~-----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 175 (220)
T 1t6n_A 103 ERFSKYMPNVKVAVFFGGLSIKKD--EEVLKK-----NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 175 (220)
T ss_dssp HHHTTTSTTCCEEEESCCSCHHHH--HHHHHH-----SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHH
T ss_pred HHHHhhCCCceEEEEeCCCChHHH--HHHHhc-----CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccC
Confidence 999753 3566666666433221 111111 2347999999998754322 233478999999999985421
Q ss_pred --cHHHHHHHccc-cccEEEeecCCCcCCHHH
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPIQNDLLE 328 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPiqN~l~E 328 (755)
......+..+. ..+++++||||-. .+.+
T Consensus 176 ~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~ 206 (220)
T 1t6n_A 176 MRRDVQEIFRMTPHEKQVMMFSATLSK-EIRP 206 (220)
T ss_dssp HHHHHHHHHHTSCSSSEEEEEESCCCT-TTHH
T ss_pred cHHHHHHHHHhCCCcCeEEEEEeecCH-HHHH
Confidence 22222333333 5678999999844 3443
No 71
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.63 E-value=1.4e-15 Score=153.04 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=109.1
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.|+..|..++... .+.++|||+++....+.+...|...|+.+..++|+++..+|.++++.|+++... +|++|.
T Consensus 15 ~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vlvaT~ 89 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR--VLVATD 89 (212)
T ss_dssp TTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC--EEEECT
T ss_pred HHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe--EEEecC
Confidence 467888888888753 478999999999999999999999999999999999999999999999986544 688999
Q ss_pred CcccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCC
Q psy5647 575 AGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625 (755)
Q Consensus 575 agg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~g 625 (755)
++++|+|+++++.||+||++|++..+.|++||++|.|+.. .+|.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999999999999999999999765 445566654
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.61 E-value=5.4e-15 Score=151.02 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=110.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++.+|+..+||+|||++++..+...+...........++|||||. .|..||.++
T Consensus 46 ~~~~~~Q~~~i~~~~---------~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL---------QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp CBCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 368999999998874 3568999999999999998776655443322111112468999999 888999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.++... .+.+..+.|+....... ..+ ...+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~ 187 (236)
T 2pl3_A 117 LRKVGKNHDFSAGLIIGGKDLKHEA--ERI-------NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG 187 (236)
T ss_dssp HHHHTTTSSCCEEEECCC--CHHHH--HHH-------TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHhCCCCeeEEEEECCCCHHHHH--HhC-------CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCC
Confidence 9999864 35566666654322111 111 1358999999999765432 333578999999999986543
Q ss_pred --cHHHHHHHccc-cccEEEeecCCC
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPi 322 (755)
......+..++ ..+++++|||+-
T Consensus 188 ~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 188 FADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp THHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 34444455554 455899999973
No 73
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.61 E-value=1.9e-15 Score=174.16 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=83.7
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEE---
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLV--- 589 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI--- 589 (755)
.+.++|||++.....+.+.+.|+..|+.+..++|+++.++ |.++.. -+|++|.+.+.|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEecC
Confidence 3689999999999999999999999999999999998764 333333 5789999999999986 99888
Q ss_pred -------EeC-----------CCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 590 -------MFD-----------PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 590 -------~~D-----------~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
.|| .|-++..+.|++||++| |..- . |.|++....
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 566 67788899999999999 6543 3 788877543
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=1.9e-14 Score=143.49 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=108.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++++++..++|+|||+.++..+...+.... ...++|||||. .|+.||.++
T Consensus 24 ~~~~~~Q~~~i~~~~---------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~ 90 (206)
T 1vec_A 24 EKPSPIQEESIPIAL---------SGRDILARAKNGTGKSGAYLIPLLERLDLKK----DNIQAMVIVPTRELALQVSQI 90 (206)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCSSSTTHHHHHHHHHHHCCTTS----CSCCEEEECSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc---------cCCCEEEECCCCCchHHHHHHHHHHHhcccC----CCeeEEEEeCcHHHHHHHHHH
Confidence 368999999998874 3468999999999999987766655443221 12458999999 788999999
Q ss_pred HHHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.++... ...+....|+...... .... ....+|+|+|++.+..... .+....+++||+||||++....
T Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 91 CIQVSKHMGGAKVMATTGGTNLRDD--IMRL------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHTTTSSSCCEEEECSSSCHHHH--HHHT------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHhhcCCceEEEEeCCccHHHH--HHhc------CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9998753 3556666665433211 1111 1346899999999865443 2223468999999999986533
Q ss_pred --cHHHHHHHccc-cccEEEeecCCC
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPi 322 (755)
......+..++ ..+++++|||+-
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCC
Confidence 22233334443 567899999983
No 75
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=147.73 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=110.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++++|+..++|+|||++++..+...+...+. ..++|||+|. .|..||.++
T Consensus 64 ~~~~~~Q~~~i~~i~---------~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~----~~~~lil~Ptr~L~~q~~~~ 130 (249)
T 3ber_A 64 TKPTKIQIEAIPLAL---------QGRDIIGLAETGSGKTGAFALPILNALLETPQ----RLFALVLTPTRELAFQISEQ 130 (249)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC----SSCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC----CceEEEEeCCHHHHHHHHHH
Confidence 378999999998874 35689999999999999977766655444322 2358999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.++... .+.+..+.|+....... .... ...+|+|+|++.+...... +....+++||+||||++.+..
T Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 202 (249)
T 3ber_A 131 FEALGSSIGVQSAVIVGGIDSMSQS--LALA------KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD 202 (249)
T ss_dssp HHHHHGGGTCCEEEECTTSCHHHHH--HHHH------TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHhccCCeeEEEEECCCChHHHH--HHhc------CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC
Confidence 9999764 45566666654332211 1111 2368999999999765432 223468999999999986542
Q ss_pred --cHHHHHHHccc-cccEEEeecCCC
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPi 322 (755)
......+..++ ..+++++|||+-
T Consensus 203 ~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 203 FETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp CHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 33344445553 567899999984
No 76
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=2.2e-14 Score=146.01 Aligned_cols=154 Identities=20% Similarity=0.162 Sum_probs=106.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|||.+++..+. .+..+|+..++|+|||++++..+...+.... ...++|||||. .|..||.+++
T Consensus 46 ~~~~~Q~~~i~~~~---------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 112 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR---------CGLDLIVQAKSGTGKTCVFSTIALDSLVLEN----LSTQILILAPTREIAVQIHSVI 112 (230)
T ss_dssp SCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------CCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEeCCHHHHHHHHHHH
Confidence 58999999998864 3567999999999999986655443332211 12468999999 8899999999
Q ss_pred HHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCC--
Q psy5647 225 TKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNC-- 298 (755)
Q Consensus 225 ~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~-- 298 (755)
.++... .+.+..+.|+....... ..+ ...+|+|+|++.+..... .+....+++||+||||++-+.
T Consensus 113 ~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-------~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 113 TAIGIKMEGLECHVFIGGTPLSQDK--TRL-------KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHTTTSTTCCEEEECTTSCHHHHH--HHT-------TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHhcccCCceEEEEeCCCCHHHHH--Hhc-------cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc
Confidence 999753 45666666664432211 111 136899999999876542 222346789999999998543
Q ss_pred -ccHHHHHHHccc-cccEEEeecCC
Q psy5647 299 -ESQTYQALMGLK-AKRRVLLSGTP 321 (755)
Q Consensus 299 -~s~~~~al~~l~-~~~rllLTGTP 321 (755)
.......+..++ ..+++++|||+
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 184 FQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp SHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred hHHHHHHHHHhCCCCCeEEEEEecc
Confidence 233334445554 55689999996
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.56 E-value=2.1e-14 Score=144.83 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|||.+++..+.+ +..+|+..++|+|||++++..+...+.... ...++|||||. .|+.||.+++
T Consensus 26 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 92 (219)
T 1q0u_A 26 KPTEIQERIIPGALR---------GESMVGQSQTGTGKTHAYLLPIMEKIKPER----AEVQAVITAPTRELATQIYHET 92 (219)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEECCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCCChHHHHHHHHHHHHHHhCc----CCceEEEEcCcHHHHHHHHHHH
Confidence 689999999998754 467899999999999987766655443221 12458999999 8889999999
Q ss_pred HHHhCC-----CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCC
Q psy5647 225 TKWLGG-----RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 225 ~kw~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn 297 (755)
.++... .+.+..+.|+...... ........+|+|+|++.+...... +....+++||+||||++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 93 LKITKFCPKDRMIVARCLIGGTDKQKA--------LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHTTSCGGGCCCEEEECCCSHHHHT--------TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH
T ss_pred HHHhhhcccccceEEEEEeCCCCHHHH--------HHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhh
Confidence 998763 3556666666543211 011123468999999998764432 2224678999999999864
Q ss_pred Cc--cHHHHHHHccc-cccEEEeecCCCcCCHHHH
Q psy5647 298 CE--SQTYQALMGLK-AKRRVLLSGTPIQNDLLEY 329 (755)
Q Consensus 298 ~~--s~~~~al~~l~-~~~rllLTGTPiqN~l~El 329 (755)
.. ......+..++ ..+++++|||+ .+++.++
T Consensus 165 ~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 165 MGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred hChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 32 33444455554 45689999997 4444443
No 78
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=4.1e-14 Score=146.06 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=109.1
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCC-----CCCCCeEEEEeCC-cchH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-----KPLIDKAIIVAPS-SLVK 218 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~-----~p~~~~~LIV~P~-sll~ 218 (755)
..++|||.+++..+. .+.++|+..++|+|||+.++..+...+...... .....++|||||. .|..
T Consensus 44 ~~~~~~Q~~~i~~i~---------~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 114 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL---------EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAI 114 (253)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHH
Confidence 368999999998874 346799999999999999887766555433210 1112469999999 8889
Q ss_pred hHHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCccc
Q psy5647 219 NWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRL 295 (755)
Q Consensus 219 nW~~E~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~l 295 (755)
||.+++.++... .+.+..+.|+...... .... ....+|+|+|++.+...... +....+++||+||||++
T Consensus 115 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~------~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 115 QILSESQKFSLNTPLRSCVVYGGADTHSQ--IREV------QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRM 186 (253)
T ss_dssp HHHHHHHHHHTTSSCCEEEECSSSCSHHH--HHHH------SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHH--HHHh------CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHH
Confidence 999999999764 4555555555432211 1111 12468999999999765432 22346789999999998
Q ss_pred CCC--ccHHHHHHHcc--c---cccEEEeecCCC
Q psy5647 296 KNC--ESQTYQALMGL--K---AKRRVLLSGTPI 322 (755)
Q Consensus 296 Kn~--~s~~~~al~~l--~---~~~rllLTGTPi 322 (755)
... .......+..+ . ...++++||||-
T Consensus 187 ~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 543 23334444432 2 346899999973
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.55 E-value=6.9e-13 Score=151.00 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=97.6
Q ss_pred HHhhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEee
Q psy5647 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572 (755)
Q Consensus 493 ~~~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlS 572 (755)
.....|...+...+..... .+.+|||||++....+.|...|...|++...++|.....+|.-+...|..+ . ++++
T Consensus 454 ~t~~eK~~al~~~I~~~~~-~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~--VtVA 528 (822)
T 3jux_A 454 RTQKEKYEKIVEEIEKRYK-KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M--VTIA 528 (822)
T ss_dssp SSHHHHHHHHHHHHHHHHH-HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C--EEEE
T ss_pred ecHHHHHHHHHHHHHHHhh-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e--EEEE
Confidence 3445677777777766532 378999999999999999999999999999999996555554444555433 2 7899
Q ss_pred cCCcccccccC--------CCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcE
Q psy5647 573 SKAGGCGLNLI--------GANRLVMFDPDWNPANDDQAMARVWRDGQKKPC 616 (755)
Q Consensus 573 t~agg~GLNL~--------~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V 616 (755)
|..+|.|+++. +..+||.+|.|-++..|.|++||++|.|.+-..
T Consensus 529 TdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 529 TNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp ETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred cchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 99999999997 778999999999999999999999999987543
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.54 E-value=4.2e-14 Score=142.98 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=103.6
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++.+|+..++|+|||++++..+...+.... ...++||++|. .++.||.++
T Consensus 35 ~~~~~~Q~~~i~~~~---------~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~ 101 (224)
T 1qde_A 35 EEPSAIQQRAIMPII---------EGHDVLAQAQSGTGKTGTFSIAALQRIDTSV----KAPQALMLAPTRELALQIQKV 101 (224)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSSHHHHHHHHHHHHCCTTC----CSCCEEEECSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh---------cCCCEEEECCCCCcHHHHHHHHHHHHHhccC----CCceEEEEECCHHHHHHHHHH
Confidence 479999999998874 3467999999999999986554444332221 12469999999 888999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh--hhcCCccEEEEeCCcccCCCc-
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV--LHKNEVGLVLCDEGHRLKNCE- 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~--l~~~~~~lvIiDEaH~lKn~~- 299 (755)
+.++... .+.+..+.|+...... ... ....+|+|+|++.+...... +....+++||+||||++....
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~-------~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 172 (224)
T 1qde_A 102 VMALAFHMDIKVHACIGGTSFVED--AEG-------LRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 172 (224)
T ss_dssp HHHHTTTSCCCEEEECC-------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHhcccCceEEEEeCCcchHHH--Hhc-------CCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhh
Confidence 9999764 4556666665432211 110 11268999999998654322 223468999999999985432
Q ss_pred -cHHHHHHHcc-ccccEEEeecCCC
Q psy5647 300 -SQTYQALMGL-KAKRRVLLSGTPI 322 (755)
Q Consensus 300 -s~~~~al~~l-~~~~rllLTGTPi 322 (755)
......+..+ ...++++||||+-
T Consensus 173 ~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 173 KEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred HHHHHHHHHhCCccCeEEEEEeecC
Confidence 2333344444 3456899999984
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.54 E-value=2e-11 Score=142.99 Aligned_cols=109 Identities=11% Similarity=0.122 Sum_probs=97.5
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFD 592 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D 592 (755)
.+.++|||++.....+.+...|...|+++..++|+++..+|.++++.|..+... +|++|.+++.|+|++.++.||++|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~--VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD--CLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS--EEEESCCCCTTCCCTTEEEEEETT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce--EEEccChhhcCccCCCCCEEEEeC
Confidence 478999999999999999999999999999999999999999999999875544 789999999999999999999999
Q ss_pred C-----CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 593 P-----DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 593 ~-----~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
. ++++..+.|++||++|.|. -.++.|+...+
T Consensus 516 ~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred CcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 8 8999999999999999863 24555676655
No 82
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.53 E-value=3.2e-14 Score=150.18 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 496 S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
+.|+..|..++... .+.++|||++.....+.+...|...|+.+..++|+++..+|.++++.|+++... +|++|.+
T Consensus 13 ~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~--vLVaT~v 87 (300)
T 3i32_A 13 RGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR--VLVATDV 87 (300)
T ss_dssp SSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC--EEEECST
T ss_pred HHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce--EEEEech
Confidence 56888888888764 378999999999999999999999999999999999999999999999986544 7899999
Q ss_pred cccccccCCCCEEEEeCCCCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCC
Q psy5647 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626 (755)
Q Consensus 576 gg~GLNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gT 626 (755)
+++|+|+++++.||.||++|++..+.|++||++|.|+.. .+|.|++...
T Consensus 88 a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 999999999999999999999999999999999999874 4455666543
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.52 E-value=6.9e-14 Score=142.98 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|||.+++..+. .+..+|+..++|+|||++++..+...+.... ...++|||+|. .|..||.+++
T Consensus 52 ~~~~~Q~~ai~~i~---------~~~~~li~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~ 118 (237)
T 3bor_A 52 KPSAIQQRAIIPCI---------KGYDVIAQAQSGTGKTATFAISILQQLEIEF----KETQALVLAPTRELAQQIQKVI 118 (237)
T ss_dssp SCCHHHHHHHHHHH---------TTCCEEECCCSSHHHHHHHHHHHHHHCCTTS----CSCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---------CCCCEEEECCCCCcHHHHHHHHHHHHHHhcC----CCceEEEEECcHHHHHHHHHHH
Confidence 59999999998874 3467999999999999987766655443221 12468999999 8889999999
Q ss_pred HHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCC--Cc
Q psy5647 225 TKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKN--CE 299 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn--~~ 299 (755)
.++... ...+....++..... ...... ....+|+|+|++.+..... .+....+++||+||||++.. ..
T Consensus 119 ~~~~~~~~~~~~~~~g~~~~~~--~~~~l~-----~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~ 191 (237)
T 3bor_A 119 LALGDYMGATCHACIGGTNVRN--EMQKLQ-----AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFK 191 (237)
T ss_dssp HHHTTTTTCCEEEECC--------------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCH
T ss_pred HHHhhhcCceEEEEECCCchHH--HHHHHh-----cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcH
Confidence 999764 345555555432211 111110 1235899999998865442 23334689999999999843 33
Q ss_pred cHHHHHHHccc-cccEEEeecCCC
Q psy5647 300 SQTYQALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 300 s~~~~al~~l~-~~~rllLTGTPi 322 (755)
......+..+. ..+.+++|||+-
T Consensus 192 ~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 192 DQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhCCCCCeEEEEEEecC
Confidence 44555555554 456799999984
No 84
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.50 E-value=1.5e-13 Score=139.52 Aligned_cols=160 Identities=16% Similarity=0.231 Sum_probs=105.7
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCCCCCeEEEEeCC-cchHhHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL--AKPLIDKAIIVAPS-SLVKNWC 221 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~--~~p~~~~~LIV~P~-sll~nW~ 221 (755)
..++|+|.+++..+. .++.+|+..++|+|||+.++..+...+..... ......++|||+|. .|..||.
T Consensus 41 ~~~~~~Q~~~i~~~~---------~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 41 LKPTPIQSQAWPIIL---------QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 379999999998874 35688999999999999987766554432111 11123468999999 7889999
Q ss_pred HHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 222 NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 222 ~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+++.++....+.+..+.|+...... ...+. ...+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 183 (228)
T 3iuy_A 112 AECSKYSYKGLKSICIYGGRNRNGQ--IEDIS------KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 183 (228)
T ss_dssp HHHHHHCCTTCCEEEECC------C--HHHHH------SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTT
T ss_pred HHHHHhcccCceEEEEECCCChHHH--HHHhc------CCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccc
Confidence 9999997656666666665433211 11111 235899999999876432 2223468999999999976532
Q ss_pred --cHHHHHHHccc-cccEEEeecCC
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTP 321 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTP 321 (755)
......+..++ ....+++|||.
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 184 FEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp CHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred hHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 33334444453 45679999995
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.3e-13 Score=140.14 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++|+|.+++..+.. ++.+|+..++|+|||+.++..+...+...........++|||+|. .|+.||.+++
T Consensus 76 ~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE---------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp BCCHHHHHHHHHHHH---------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 589999999987754 357899999999999997776665554322111112458999999 8889999999
Q ss_pred HHHhCC-CceEEEecCCCHH-HHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCCCc
Q psy5647 225 TKWLGG-RVAALPIDGGSKA-EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn~~ 299 (755)
.+++.. ...+..+.|+... .....+.. ..+|+|+|++.+...... +.-..+++||+||||++-...
T Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~ 217 (262)
T 3ly5_A 147 KELMTHHVHTYGLIMGGSNRSAEAQKLGN---------GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217 (262)
T ss_dssp HHHTTTCCSCEEEECSSSCHHHHHHHHHH---------CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHhhcCceEEEEECCCCHHHHHHHhcC---------CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhh
Confidence 999864 3444445554332 22222211 257999999998765432 223468999999999975532
Q ss_pred --cHHHHHHHccc-cccEEEeecCCC
Q psy5647 300 --SQTYQALMGLK-AKRRVLLSGTPI 322 (755)
Q Consensus 300 --s~~~~al~~l~-~~~rllLTGTPi 322 (755)
......+..+. ....+++|||+-
T Consensus 218 ~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 218 FEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp CHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 33333444443 456799999974
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.45 E-value=3.3e-13 Score=138.51 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=104.5
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|||.+++..+. .++.+|+..++|+|||+.++..+...+...... ..++|||+|. .|..||.++
T Consensus 50 ~~~~~~Q~~~i~~~~---------~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~---~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 50 QMPTPIQMQAIPVML---------HGRELLASAPTGSGKTLAFSIPILMQLKQPANK---GFRALIISPTRELASQIHRE 117 (245)
T ss_dssp CSCCHHHHHHHHHHH---------TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSS---SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh---------CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccC---CceEEEEeCCHHHHHHHHHH
Confidence 368999999998764 346799999999999999777665555432221 1358999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh----hhcCCccEEEEeCCcccCCC
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV----LHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~----l~~~~~~lvIiDEaH~lKn~ 298 (755)
+.+++.. .+.+..+.++.... ..+ ........+|+|+|++.+...... +.-..+++||+||||++-..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 118 LIKISEGTGFRIHMIHKAAVAA-----KKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFED 190 (245)
T ss_dssp HHHHTTTSCCCEECCCHHHHHH-----TTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHH
T ss_pred HHHHhcccCceEEEEecCccHH-----HHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccc
Confidence 9999764 34444433321110 000 011123568999999999765432 23346889999999998542
Q ss_pred -----ccHHHHHHHcc--ccccEEEeecCC
Q psy5647 299 -----ESQTYQALMGL--KAKRRVLLSGTP 321 (755)
Q Consensus 299 -----~s~~~~al~~l--~~~~rllLTGTP 321 (755)
.......+..+ ...+.+++|||+
T Consensus 191 ~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 191 GKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp C--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred ccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 12222223333 345779999998
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.43 E-value=1.2e-12 Score=134.21 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCC-CCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL-AKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~-~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
.++|||.+++..+.. +..+|+..++|+|||+.++..+...+...+. ......++|||||. .|..||.++
T Consensus 51 ~~~~~Q~~~i~~~~~---------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS---------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp SCCHHHHHHHHHHHH---------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 689999999988753 4678999999999999977766555543321 11223468999999 788999999
Q ss_pred HHHHhCC-CceEEEecCCCHHH-HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhh--hhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGG-RVAALPIDGGSKAE-IDNKLNSFMQTYGRRPVNPILVISYETFRSHAS--VLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~-~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~--~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+.++... .+.+..+.|+.... ....+.. ..+|+|+|++.+..... .+....+++||+||||++-...
T Consensus 122 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 122 AAEYCRACRLKSTCIYGGAPKGPQIRDLER---------GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHH---------CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHhhcCceEEEEECCCChHHHHHHhcC---------CCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC
Confidence 9988653 45566666654332 2222211 25799999999876543 2223468899999999975532
Q ss_pred --cHHHHHHHcc-ccccEEEeecCC
Q psy5647 300 --SQTYQALMGL-KAKRRVLLSGTP 321 (755)
Q Consensus 300 --s~~~~al~~l-~~~~rllLTGTP 321 (755)
......+..+ .....+++|||+
T Consensus 193 ~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 193 FEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp CHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred cHHHHHHHHHhCCccceEEEEEeec
Confidence 2333334444 345679999996
No 88
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.41 E-value=4e-11 Score=140.26 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=97.8
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCCCCEEEEeC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFD 592 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~a~~vI~~D 592 (755)
.+.++|||++.....+.+...|...|+++..++|.++..+|.++++.|.++... +|++|.+.+.|+|++.++.||++|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~--VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD--VLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS--EEEESCCCSTTCCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE--EEEecchhhCCcccCCCCEEEEeC
Confidence 468999999999999999999999999999999999999999999999875544 789999999999999999999999
Q ss_pred C-----CCCCCcHHHHhHhhhccCCCCcEEEEEEeeCCCH
Q psy5647 593 P-----DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627 (755)
Q Consensus 593 ~-----~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv~~gTi 627 (755)
. ++++..+.|++||++|.+ +-.++.|+...+.
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred cccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 8 899999999999999972 3345567776653
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.23 E-value=9.2e-10 Score=126.04 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=49.5
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCcccccccCC----CCE
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIG----ANR 587 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~GLNL~~----a~~ 587 (755)
..+.++|||..+...++.+.+.+.. ++ +.+.|.. .+|.+++++|..+. ...|.+.+....+|||+.+ +..
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 4567999999999999888877754 33 4556654 46889999998743 3123337789999999987 788
Q ss_pred EEEeCCCCCCC
Q psy5647 588 LVMFDPDWNPA 598 (755)
Q Consensus 588 vI~~D~~WNp~ 598 (755)
||++..|+-+.
T Consensus 456 Vii~~lPf~~~ 466 (540)
T 2vl7_A 456 LVLAGLPYPNV 466 (540)
T ss_dssp EEEESCCCCCT
T ss_pred EEEECCCCCCC
Confidence 99999997655
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.19 E-value=6.8e-11 Score=125.13 Aligned_cols=156 Identities=17% Similarity=0.153 Sum_probs=102.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..++|+|.+++..++. ..++.+|+...+|+|||+..+..+...+..... ...+|||+|+ .|..|+.+.
T Consensus 113 ~~pt~iQ~~ai~~il~-------~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~----~~~~lil~PtreLa~Q~~~~ 181 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA-------EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK----YPQCLCLSPTYELALQTGKV 181 (300)
T ss_dssp CSCCHHHHHHHHHHTS-------SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC----SCCEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCCeEEEECCCCCCccHHHHHHHHHhhhccCC----CceEEEEcCcHHHHHHHHHH
Confidence 4688999999987642 124789999999999999876544443322211 1258999999 788899999
Q ss_pred HHHHhCC--CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhh---hhcCCccEEEEeCCcccCCC
Q psy5647 224 ITKWLGG--RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV---LHKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 224 ~~kw~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~---l~~~~~~lvIiDEaH~lKn~ 298 (755)
+.++... .+.+....++..... ......+|+|+|++.+...... +.-..+.+||+||||++-..
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~ 250 (300)
T 3fmo_B 182 IEQMGKFYPELKLAYAVRGNKLER-----------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT 250 (300)
T ss_dssp HHHHTTTSTTCCEEEESTTCCCCT-----------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHS
T ss_pred HHHHHhhCCCcEEEEEeCCccHhh-----------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhc
Confidence 9888652 345555555432110 1123458999999998765532 22346789999999997542
Q ss_pred c--cHHHHHH-Hcc-ccccEEEeecCCC
Q psy5647 299 E--SQTYQAL-MGL-KAKRRVLLSGTPI 322 (755)
Q Consensus 299 ~--s~~~~al-~~l-~~~~rllLTGTPi 322 (755)
. ......+ ..+ +....+++|||+-
T Consensus 251 ~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp TTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred cCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 1 1222223 333 3456799999984
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.05 E-value=1.8e-08 Score=117.23 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=92.2
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-H---h
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-K---N 219 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~---n 219 (755)
+-...|-|..|+--+.+ |-|....+|.|||+.+...+......+ +.++||+|+--+ . +
T Consensus 77 G~~Pt~VQ~~~ip~Llq-----------G~IaeakTGeGKTLvf~Lp~~L~aL~G-------~qv~VvTPTreLA~Qdae 138 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE-----------GKIAEMKTGEGKTLVATLAVALNALTG-------KGVHVVTVNDYLARRDAE 138 (997)
T ss_dssp CCCCCHHHHHHHHHHHT-----------TSEEECCSTHHHHHHHHHHHHHHHTTC-------SCCEEEESSHHHHHHHHH
T ss_pred CCCCcHHHHhhcccccC-----------CceeeccCCCchHHHHHHHHHHHHHhC-------CCEEEEeCCHHHHHHHHH
Confidence 34567889999876632 338889999999998766653322222 237999999554 3 4
Q ss_pred HHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHh-----hhh----hhhhcC---CccEE
Q psy5647 220 WCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR-----SHA----SVLHKN---EVGLV 287 (755)
Q Consensus 220 W~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~-----~~~----~~l~~~---~~~lv 287 (755)
|...+.++++ +.+..+.|+...+..... . ..+|++.|...|. ... ..+... +..++
T Consensus 139 ~m~~l~~~lG--Lsv~~i~Gg~~~~~r~~a------y----~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~l 206 (997)
T 2ipc_A 139 WMGPVYRGLG--LSVGVIQHASTPAERRKA------Y----LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYA 206 (997)
T ss_dssp HHHHHHHTTT--CCEEECCTTCCHHHHHHH------H----TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEE
T ss_pred HHHHHHHhcC--CeEEEEeCCCCHHHHHHH------c----CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceE
Confidence 6666666665 556666666543322211 1 2589999998873 221 122233 68899
Q ss_pred EEeCCcccCCCccHHHHHHHccccccEEEeecCCCcCCHHHHHHhh
Q psy5647 288 LCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLV 333 (755)
Q Consensus 288 IiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiqN~l~El~sll 333 (755)
|+||+|++--. .+..-+++|| |+... ..+|..+
T Consensus 207 IIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 207 IIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp EETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHHHH
T ss_pred EEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHHHH
Confidence 99999965321 2333499999 88876 3444433
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.75 E-value=1.8e-08 Score=102.44 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=92.7
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.++++|.+++..+.. +..+++.-++|+|||.+...++.......... ....+++++|. .+..+..+.+
T Consensus 61 p~~~~q~~~i~~i~~---------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~--~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 61 PVKKFESEILEAISQ---------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRA--AECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp GGGGGHHHHHHHHHH---------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCG--GGCEEEEEESSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhc---------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCC--CceEEEEeccchHHHHHHHHHH
Confidence 578999999988743 45788999999999987666655433322111 11358999999 4556777777
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCccc-CCCccH--
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL-KNCESQ-- 301 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~l-Kn~~s~-- 301 (755)
.+.++..+......+... .........+|+|+|.+.+...... .-.++++||+||||+. -+.+..
T Consensus 130 ~~~~~~~~~~~~g~~~~~-----------~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 130 AFERGEEPGKSCGYSVRF-----------ESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp HHTTTCCTTSSEEEEETT-----------EEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred HHHhccccCceEEEeech-----------hhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHH
Confidence 776654221100000000 0001113357999999888766543 2346899999999973 111111
Q ss_pred HHHHH-HccccccEEEeecCCCcC
Q psy5647 302 TYQAL-MGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 302 ~~~al-~~l~~~~rllLTGTPiqN 324 (755)
..+.+ ......+.+++|||+-.+
T Consensus 198 ~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 198 VLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp HHHHHHHHCTTSEEEEEECSSCCH
T ss_pred HHHHHHhhCCCCeEEEEecCCCHH
Confidence 11222 222445689999997443
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.63 E-value=1.4e-07 Score=108.16 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.+||||.+.+..+++.+. .++.+++-..+|+|||+..+..+.. . ..+++|++|+ .+..||.+++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~-----~~~~~~~~a~TGtGKT~~~l~p~l~---~-------~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR-----NNFLVALNAPTGSGKTLFSLLVSLE---V-------KPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH-----TTCEEEEECCTTSSHHHHHHHHHHH---H-------CSEEEEEESSGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-----cCCcEEEECCCCccHHHHHHHHHHh---C-------CCeEEEEcCCHHHHHHHHHHH
Confidence 689999999998887763 4567888999999999988766544 1 1468999999 7788999998
Q ss_pred HHHhCC-CceEEEecCCCHH-------------------------------HHHHHHHHHH------------HHhCCCC
Q psy5647 225 TKWLGG-RVAALPIDGGSKA-------------------------------EIDNKLNSFM------------QTYGRRP 260 (755)
Q Consensus 225 ~kw~~~-~~~~~~~~~~~~~-------------------------------~~~~~l~~~~------------~~~~~~~ 260 (755)
.+.... .+.+..+.|...- .....+.... .......
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 876432 3455555442110 0001111000 0000012
Q ss_pred CCCEEEEehhhHhhhhhh--hh-cCCccEEEEeCCcccCC
Q psy5647 261 VNPILVISYETFRSHASV--LH-KNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 261 ~~~VlI~sye~l~~~~~~--l~-~~~~~lvIiDEaH~lKn 297 (755)
..+|||++|..+...... +. .....+||+||||++-+
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 358999999998765311 11 13567899999999966
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.21 E-value=3e-06 Score=98.20 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=60.1
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
..||+|++.+..+++.+ ..++.+|+...+|+|||+..+..+...+... ..+++|++|+ ++..|+.+++
T Consensus 3 ~~R~~Q~~~~~~v~~~l-----~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSL-----QKSYGVALESPTGSGKTIMALKSALQYSSER------KLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp --CHHHHHHHHHHHHHH-----HHSSEEEEECCTTSCHHHHHHHHHHHHHHHH------TCEEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH-----HcCCCEEEECCCCCCHHHHHHHHHHHhhhhc------CCeEEEECCCHHHHHHHHHHH
Confidence 56899999999888877 3567799999999999999877655544321 1468999999 7788999998
Q ss_pred HHHhC-CCceEEEec
Q psy5647 225 TKWLG-GRVAALPID 238 (755)
Q Consensus 225 ~kw~~-~~~~~~~~~ 238 (755)
.++.. ..+.+..+.
T Consensus 72 ~~l~~~~~~~~~~l~ 86 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQ 86 (620)
T ss_dssp HHHHHHSCCCEEECC
T ss_pred HHHhhccCeEEEEEE
Confidence 87643 134444433
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.63 E-value=0.00027 Score=82.39 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=52.5
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCN 222 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~ 222 (755)
...|-+.|++||..++. ...=+|+.-..|+|||.+.+.++..++..+ .++||++|+ ..+.+-..
T Consensus 187 ~~~LN~~Q~~AV~~al~--------~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~-------~~ILv~a~TN~AvD~i~e 251 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS--------QKELAIIHGPPGTGKTTTVVEIILQAVKQG-------LKVLCCAPSNIAVDNLVE 251 (646)
T ss_dssp STTCCHHHHHHHHHHHH--------CSSEEEEECCTTSCHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc--------CCCceEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEcCchHHHHHHHH
Confidence 35789999999998754 122367888999999999999999998865 359999999 45566665
Q ss_pred HHHH
Q psy5647 223 EITK 226 (755)
Q Consensus 223 E~~k 226 (755)
-+..
T Consensus 252 rL~~ 255 (646)
T 4b3f_X 252 RLAL 255 (646)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.25 E-value=0.0039 Score=72.21 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=90.6
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc-hHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL-VKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl-l~nW~~E 223 (755)
..|-+.|+++|..+.. ..-+++--..|+|||.++..++..+.... ..++|+++|+.. +.+-...
T Consensus 179 ~~ln~~Q~~av~~~l~---------~~~~li~GppGTGKT~~~~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 243 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 243 (624)
T ss_dssp CCCCHHHHHHHHHHHT---------CSEEEEECCTTSCHHHHHHHHHHHHHTSS------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc---------CCCeEEECCCCCCHHHHHHHHHHHHHHcC------CCeEEEEeCcHHHHHHHHHH
Confidence 4688999999987642 23467888999999999999888877532 146899999954 4444444
Q ss_pred HHHHhCCCceEEEecCCCHH----------------------H-----------------HHHHHHHHHH--HhCCCCCC
Q psy5647 224 ITKWLGGRVAALPIDGGSKA----------------------E-----------------IDNKLNSFMQ--TYGRRPVN 262 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~----------------------~-----------------~~~~l~~~~~--~~~~~~~~ 262 (755)
+.+. + +.++.+....+. . ....+..... ....-...
T Consensus 244 l~~~-~--~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (624)
T 2gk6_A 244 IHQT-G--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNA 320 (624)
T ss_dssp HHTT-T--CCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhc-C--CeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4432 1 122222111000 0 0000100000 00000134
Q ss_pred CEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 263 ~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
+|+++|...+.. ..+....||+||||||...-.+. . .+..+....+++|-|=|-|
T Consensus 321 ~vI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~--~--li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 321 DVICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE--C--MVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp SEEEEETGGGGC--GGGTTCCCSEEEETTGGGSCHHH--H--HHHHTTTBSEEEEEECTTS
T ss_pred CEEEEcChhhcc--hhhhcCCCCEEEEecccccCcHH--H--HHHHHhcCCeEEEecChhc
Confidence 799998877643 23556789999999997664332 1 1222234578999999877
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.12 E-value=0.0025 Score=72.87 Aligned_cols=132 Identities=18% Similarity=0.174 Sum_probs=82.8
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...|-+.|++++..+. ..+-+++.-..|+|||.++.+++..+...+ .++++++|+........|
T Consensus 187 ~~~L~~~Q~~Av~~~~---------~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-------~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA---------GHRLVVLTGGPGTGKSTTTKAVADLAESLG-------LEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTTCCHHHHHHHHHHT---------TCSEEEEECCTTSCHHHHHHHHHHHHHHTT-------CCEEEEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH---------hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CeEEEecCcHHHHHHhHh
Confidence 4578899999998863 345678889999999999888887776654 358999999765544333
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHH
Q psy5647 224 ITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~ 303 (755)
. .+. ....+ ..+.. ..- +.+... .-....+|+|||||||.+-. ....
T Consensus 251 ~---~~~--~a~Ti------------h~ll~---------~~~---~~~~~~--~~~~~~~dvlIIDEasml~~--~~~~ 297 (574)
T 3e1s_A 251 V---TGR--TASTV------------HRLLG---------YGP---QGFRHN--HLEPAPYDLLIVDEVSMMGD--ALML 297 (574)
T ss_dssp H---HTS--CEEEH------------HHHTT---------EET---TEESCS--SSSCCSCSEEEECCGGGCCH--HHHH
T ss_pred h---hcc--cHHHH------------HHHHc---------CCc---chhhhh--hcccccCCEEEEcCccCCCH--HHHH
Confidence 2 221 11110 01100 000 011111 11224689999999999843 2333
Q ss_pred HHHHccccccEEEeecCCCcC
Q psy5647 304 QALMGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 304 ~al~~l~~~~rllLTGTPiqN 324 (755)
..+..+....+++|.|-|-|.
T Consensus 298 ~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 298 SLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp HHHTTSCTTCEEEEEECTTSC
T ss_pred HHHHhCcCCCEEEEEeccccc
Confidence 445556778899999999883
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.06 E-value=0.0044 Score=68.96 Aligned_cols=146 Identities=17% Similarity=0.230 Sum_probs=84.8
Q ss_pred chhhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 141 p~l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
|.-...|-|-|++++..+...+. .+.+..++--..|+|||..+.+++..+...+. +++++++|+....
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~----~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~------~~il~~a~T~~Aa-- 87 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIK----EKKHHVTINGPAGTGATTLTKFIIEALISTGE------TGIILAAPTHAAK-- 87 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHH----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSHHHH--
T ss_pred CCccccCCHHHHHHHHHHHHHHh----cCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC------ceEEEecCcHHHH--
Confidence 44445788999999998877654 22336788889999999999999988887653 3589999996542
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCcc
Q psy5647 221 CNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES 300 (755)
Q Consensus 221 ~~E~~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s 300 (755)
+++..-.+.. ...+ ..+.............+... ..-....+++|||||+|.+. .
T Consensus 88 -~~l~~~~~~~--~~T~------------h~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~iiiDE~~~~~---~ 142 (459)
T 3upu_A 88 -KILSKLSGKE--ASTI------------HSILKINPVTYEENVLFEQK-------EVPDLAKCRVLICDEVSMYD---R 142 (459)
T ss_dssp -HHHHHHHSSC--EEEH------------HHHHTEEEEECSSCEEEEEC-------SCCCCSSCSEEEESCGGGCC---H
T ss_pred -HHHHhhhccc--hhhH------------HHHhccCcccccccchhccc-------ccccccCCCEEEEECchhCC---H
Confidence 3333222210 0000 00100000000000111000 00112368999999999873 3
Q ss_pred HHHHHHH-ccccccEEEeecCCCc
Q psy5647 301 QTYQALM-GLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 301 ~~~~al~-~l~~~~rllLTGTPiq 323 (755)
.....+. .+....++++.|-|-|
T Consensus 143 ~~~~~l~~~~~~~~~~~~vGD~~Q 166 (459)
T 3upu_A 143 KLFKILLSTIPPWCTIIGIGDNKQ 166 (459)
T ss_dssp HHHHHHHHHSCTTCEEEEEECTTS
T ss_pred HHHHHHHHhccCCCEEEEECCHHH
Confidence 3444443 3456778999999877
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.04 E-value=0.0066 Score=72.08 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=89.9
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW~~E 223 (755)
..|-+.|+++|..+.. ..-.++--..|+|||.++..++..+.... ..++|+++|+... .+-...
T Consensus 355 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~ti~~~i~~l~~~~------~~~ilv~a~tn~A~~~l~~~ 419 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLARQG------NGPVLVCAPSNIAVDQLTEK 419 (800)
T ss_dssp CCCCHHHHHHHHHHHT---------SSEEEEECCTTSCHHHHHHHHHHHHHTTC------SSCEEEEESSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhcc---------CCeEEEEcCCCCCHHHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHH
Confidence 4688999999987642 23467888999999999999888877532 1468999999544 443333
Q ss_pred HHHHhCCCceEEEecCCCHH----------------------HH-----------------HHHHHHHHHH--hCCCCCC
Q psy5647 224 ITKWLGGRVAALPIDGGSKA----------------------EI-----------------DNKLNSFMQT--YGRRPVN 262 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~~----------------------~~-----------------~~~l~~~~~~--~~~~~~~ 262 (755)
+.+. + +.++.+....+. .. ...+...... ...-...
T Consensus 420 l~~~-g--~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 496 (800)
T 2wjy_A 420 IHQT-G--LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNA 496 (800)
T ss_dssp HHTT-T--CCEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHh-C--cceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccC
Confidence 4332 1 122222111100 00 0000000000 0000124
Q ss_pred CEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 263 ~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
+|+++|...+.. ..+....||+||||||...-... ..+..+....+++|-|=|-|
T Consensus 497 ~VI~~T~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 497 DVICCTCVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp SEEEEETGGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CEEEEchhhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 689988877653 23456689999999997664321 12223344678999999877
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0076 Score=71.61 Aligned_cols=154 Identities=18% Similarity=0.273 Sum_probs=90.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc-hHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL-VKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl-l~nW~~E 223 (755)
..|-+.|+++|..+.. ..-.++--..|+|||.++..++..+....+ .++||++|+.. +.+-...
T Consensus 359 ~~Ln~~Q~~Av~~~l~---------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~------~~ILv~a~tn~A~d~l~~r 423 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ---------RPLSLIQGPPGTGKTVTSATIVYHLSKIHK------DRILVCAPSNVAVDHLAAK 423 (802)
T ss_dssp CCCCHHHHHHHHHHTT---------CSEEEEECSTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhc---------CCCEEEECCCCCCHHHHHHHHHHHHHhCCC------CeEEEEcCcHHHHHHHHHH
Confidence 4688999999987632 234677889999999999998887775311 46899999954 4555555
Q ss_pred HHHHhCCCceEEEecCCCH---------------------HHH-----------------HHHHHHHHH--HhCCCCCCC
Q psy5647 224 ITKWLGGRVAALPIDGGSK---------------------AEI-----------------DNKLNSFMQ--TYGRRPVNP 263 (755)
Q Consensus 224 ~~kw~~~~~~~~~~~~~~~---------------------~~~-----------------~~~l~~~~~--~~~~~~~~~ 263 (755)
+.+. + +.++.+..... ... ...+..... ....-...+
T Consensus 424 L~~~-g--~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~ 500 (802)
T 2xzl_A 424 LRDL-G--LKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKAD 500 (802)
T ss_dssp HHHT-T--CCEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHhh-C--ccEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 5543 1 12222111100 000 000000000 000001357
Q ss_pred EEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 264 VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
|+++|...+.. ..+.. .|++||||||..+... . ..+..+....+++|-|=|-|
T Consensus 501 VI~~T~~~~~~--~~L~~-~fd~viIDEA~q~~e~--~--~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 501 VVCCTCVGAGD--KRLDT-KFRTVLIDESTQASEP--E--CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp EEEEETTGGGC--TTCCS-CCSEEEETTGGGSCHH--H--HHHHHTTTBSEEEEEECTTS
T ss_pred EEEechhhcCh--HHHhc-cCCEEEEECccccchH--H--HHHHHHhCCCEEEEEeCccc
Confidence 99999887653 22444 8999999999876432 1 12222344678999999877
No 101
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.53 E-value=0.012 Score=67.99 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH-hHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK-NWCNEITK 226 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~-nW~~E~~k 226 (755)
-+.|++++..+. .++-+++.-..|+|||.++..++..+....... ..++++++|+.-.. +-.+.+.+
T Consensus 151 ~~~Q~~Ai~~~l---------~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~---~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVAL---------TRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHH---------TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC---CCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHh---------cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC---CCeEEEEeCChhHHHHHHHHHHH
Confidence 478999997663 345678889999999988887777766532111 13589999995543 33333433
Q ss_pred HhCC-CceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehh--hHhhhhhhhhcCCccEEEEeCCcccCCCccHHH
Q psy5647 227 WLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYE--TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303 (755)
Q Consensus 227 w~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye--~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~ 303 (755)
+... .+......+-. . ....-+.++-.+.. .+.... .....+++||||||+.+. .....
T Consensus 219 ~~~~l~l~~~~~~~~~-~-------------~~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml~--~~~~~ 280 (608)
T 1w36_D 219 ALRQLPLTDEQKKRIP-E-------------DASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMID--LPMMS 280 (608)
T ss_dssp HHHHSSCCSCCCCSCS-C-------------CCBTTTSCC-----------CT--TSCCSCSEEEECSGGGCB--HHHHH
T ss_pred HHhcCCCCHHHHhccc-h-------------hhhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhCC--HHHHH
Confidence 2210 00000000000 0 00000001111000 011111 112368999999999774 23344
Q ss_pred HHHHccccccEEEeecCCCcC
Q psy5647 304 QALMGLKAKRRVLLSGTPIQN 324 (755)
Q Consensus 304 ~al~~l~~~~rllLTGTPiqN 324 (755)
..+..+....+++|.|=|-|-
T Consensus 281 ~Ll~~l~~~~~liLvGD~~QL 301 (608)
T 1w36_D 281 RLIDALPDHARVIFLGDRDQL 301 (608)
T ss_dssp HHHHTCCTTCEEEEEECTTSG
T ss_pred HHHHhCCCCCEEEEEcchhhc
Confidence 556667788899999998774
No 102
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.35 E-value=0.017 Score=56.91 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
+.-+||.|||..++..+..+...+ .+++|+.|.-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~g-------~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFAK-------QHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEecc
Confidence 688999999999999998887665 4589998874
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.31 E-value=0.0035 Score=60.60 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=27.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
.++.-.||.|||..++.++..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g-------~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK-------KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-------CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeec
Confidence 46778999999999998888776654 357888877
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.30 E-value=0.049 Score=58.77 Aligned_cols=157 Identities=12% Similarity=0.146 Sum_probs=88.4
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~~E 223 (755)
..|.|||++.+..+.. .+-+++.-.-+.|||..+.+++.......+ ...+++++|+. ....+-++
T Consensus 162 ~~L~p~Qk~il~~l~~---------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-----g~~v~~vA~t~~qA~~vf~~ 227 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDR 227 (385)
T ss_dssp CCCCHHHHHHHHHHHH---------SSEEEEEECSSSCHHHHHHHHHHHHHHSSS-----SCEEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhcc---------CcEEEEEEcCcCChhHHHHHHHHHHHHhCC-----CCeEEEEeCCHHHHHHHHHH
Confidence 4799999988876632 133778888999999987776655433322 13589999983 33334466
Q ss_pred HHHHhC---CCce-EEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLG---GRVA-ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~---~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+..++. ..+. .+....... +. + . ....+.+.+ ...+.+....++++|+||+|.+++.
T Consensus 228 i~~mi~~~P~ll~~~~~~~~~~~------I~-f--~----nGs~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~- 288 (385)
T 2o0j_A 228 TKQAIELLPDFLQPGIVEWNKGS------IE-L--D----NGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF- 288 (385)
T ss_dssp HHHHHHHSCTTTSCCEEEECSSE------EE-E--T----TSCEEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTH-
T ss_pred HHHHHHhChHhhhhhhccCCccE------EE-e--C----CCCEEEEEE-----CCCCCccCCCCCEEEechhhhcCCC-
Confidence 666542 1010 000000000 00 0 0 001122222 1334566778899999999999873
Q ss_pred cHHHHHHHcc-c--cccEEEeecCCCcCCHHHHHHhhhhh
Q psy5647 300 SQTYQALMGL-K--AKRRVLLSGTPIQNDLLEYFSLVHFV 336 (755)
Q Consensus 300 s~~~~al~~l-~--~~~rllLTGTPiqN~l~El~sll~fl 336 (755)
...+.++... . ...++++.+||-..+ .+|.+....
T Consensus 289 ~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 289 HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 2444444332 2 346888899996553 566655544
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.20 E-value=0.013 Score=58.31 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=28.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
.++.-+||.|||..++.++..+...+ .+++++.|.-
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g-------~kVli~~~~~ 50 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD-------VKYLVFKPKI 50 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-------CCEEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-------CEEEEEEecc
Confidence 56678999999999999998887665 3478887763
No 106
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.59 E-value=0.081 Score=61.24 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=51.6
Q ss_pred hhcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc-chHhHH
Q psy5647 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWC 221 (755)
Q Consensus 143 l~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s-ll~nW~ 221 (755)
+...|-|.|+++|.. ..+.+++--..|+|||.+.+.-+..++..+.. ...++|+|+++. ...+-.
T Consensus 6 ~~~~Ln~~Q~~av~~-----------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~ 71 (647)
T 3lfu_A 6 LLDSLNDKQREAVAA-----------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMR 71 (647)
T ss_dssp HHTTCCHHHHHHHTC-----------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHH
T ss_pred hhhcCCHHHHHHHhC-----------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHH
Confidence 345788999999962 23345666689999999999999888876432 125799999884 445555
Q ss_pred HHHHHHhC
Q psy5647 222 NEITKWLG 229 (755)
Q Consensus 222 ~E~~kw~~ 229 (755)
+.+.+.++
T Consensus 72 ~rl~~~~~ 79 (647)
T 3lfu_A 72 HRIGQLMG 79 (647)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 55666544
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.58 E-value=0.032 Score=54.05 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=28.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
.++--.||.|||..++.++..+...+ .+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g-------~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAK-------QKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-------CEEEEEEec
Confidence 45677999999999999988887665 458999887
No 108
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.41 E-value=0.055 Score=53.76 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=27.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
-+..-.||.|||-.++..+..+...+ ++++|+-|.-
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g-------~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT-------CCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-------CeEEEEeecC
Confidence 35577999999999999887776554 4588888773
No 109
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.41 E-value=0.17 Score=58.04 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=87.2
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHH
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNE 223 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E 223 (755)
..|.|||+..+..+.. .+-.++.-.=|.|||..+.+++...+...+ ...++++.|+ ......-+.
T Consensus 162 ~~l~p~Q~~i~~~l~~---------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-----~~~i~~va~t~~qA~~~~~~ 227 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSS---------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-----DKAVGILAHKGSMSAEVLDR 227 (592)
T ss_dssp CCCCHHHHHHHHHHHH---------CSEEEEEECSSSCHHHHHHHHHHHHHHTSS-----SCEEEEEESSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhhcc---------ccEEEEEEcCccChHHHHHHHHHHHHHhCC-----CCeEEEEECCHHHHHHHHHH
Confidence 4789999988776522 234677779999999987665554444332 1368999998 333444466
Q ss_pred HHHHhCCC---ceE-EEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCc
Q psy5647 224 ITKWLGGR---VAA-LPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299 (755)
Q Consensus 224 ~~kw~~~~---~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~ 299 (755)
+..++... +.. ........ +. + . ....+...+ .....+....++++|+||+|..++.
T Consensus 228 i~~~i~~~p~~~~~~~~~~~~~~------i~-~--~----nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~- 288 (592)
T 3cpe_A 228 TKQAIELLPDFLQPGIVEWNKGS------IE-L--D----NGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNF- 288 (592)
T ss_dssp HHHHHTTSCTTTSCCEEEECSSE------EE-E--T----TSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTH-
T ss_pred HHHHHHhChHhhccccccCCccE------EE-e--c----CCCEEEEEe-----CCCCCccCCCcceEEEehhccCCch-
Confidence 76665421 110 00000000 00 0 0 001122221 2234455667899999999999774
Q ss_pred cHHHHHHHcc-c--cccEEEeecCCCcCCHHHHHHhhh
Q psy5647 300 SQTYQALMGL-K--AKRRVLLSGTPIQNDLLEYFSLVH 334 (755)
Q Consensus 300 s~~~~al~~l-~--~~~rllLTGTPiqN~l~El~sll~ 334 (755)
...+.++... . ...++++++||-.. .-+|.+..
T Consensus 289 ~~l~~~~~~~l~~~~~~~ii~isTP~~~--~~~y~~~~ 324 (592)
T 3cpe_A 289 HDSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIWT 324 (592)
T ss_dssp HHHHHHHHHHHSSSSCCEEEEEECCCTT--SHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEeCCCCc--hhHHHHHH
Confidence 2445554433 2 34689999999554 34555443
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.26 E-value=0.038 Score=60.49 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=69.4
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHHhCCCceEEEecCCCHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~~l 249 (755)
.-.++.-..|.|||.....++. . ++.+|++|+ .+...|.+.+.+- +.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~----~--------~~~lVlTpT~~aa~~l~~kl~~~-~~------------------- 209 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN----F--------EEDLILVPGRQAAEMIRRRANAS-GI------------------- 209 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC----T--------TTCEEEESCHHHHHHHHHHHTTT-SC-------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHhc----c--------CCeEEEeCCHHHHHHHHHHhhhc-Cc-------------------
Confidence 3456788999999987766541 1 346999999 6667787776331 00
Q ss_pred HHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHHHHHccccccEEEeecCCCc
Q psy5647 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 250 ~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
.....+-+.|++.+...........+++||||||-.+ ......++..+....+++|.|=|-|
T Consensus 210 ---------~~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~---~~~~l~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 210 ---------IVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML---HTGCVNFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp ---------CCCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS---CHHHHHHHHHHTTCSEEEEEECTTS
T ss_pred ---------cccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC---CHHHHHHHHHhCCCCEEEEecCccc
Confidence 0011234778887765443333345899999999876 2333333333333389999999877
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.42 E-value=0.35 Score=45.67 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
+.|.+++..+.+.+.......+.+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999998887766555555677889999999999999998887776
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.39 E-value=0.12 Score=53.62 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
...+.+|.-+.|+|||..|-+++..+...+.... .+++.+.+..++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~---~~~~~~~~~~l~ 111 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK---GHLVSVTRDDLV 111 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS---CCEEEECGGGTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC---CcEEEEcHHHhh
Confidence 3446899999999999999999888876543211 234555544443
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.02 E-value=1.2 Score=46.47 Aligned_cols=48 Identities=8% Similarity=0.019 Sum_probs=34.6
Q ss_pred cHHHHHHHH-HHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 148 RPHQREGVK-FMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 148 rphQ~egv~-~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
|.-|.+.+. ++..++.+ ..+.+.+|.-.+|+|||.++-.++..+....
T Consensus 25 Re~E~~~i~~~L~~~i~~---~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~ 73 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMS---SQNKLFYITNADDSTKFQLVNDVMDELITSS 73 (318)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCCEEEEECCCSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 445555555 55555543 3456778999999999999999998886543
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.87 E-value=0.19 Score=49.38 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=25.9
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
++.-+||.|||...+-.+..+...+ .+++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~g-------~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYAK-------QKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC-------CceEEEEecc
Confidence 5667899999988888876666554 3478888863
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.71 E-value=0.26 Score=52.04 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 147 LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
++|+|.+.++.+...+... ...+..++.-+.|+|||..+.+++..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCchHHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 5799999999888776421 1234578899999999999999998886543
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.69 E-value=0.2 Score=47.02 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567889999999999999988877654
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.56 E-value=0.23 Score=47.98 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=26.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
.++.-.||+|||...+-.+..+...+ ++++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~-------~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ-------YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT-------CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC-------CeEEEEccc
Confidence 35677999999977777776666554 458888877
No 118
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.05 E-value=0.28 Score=46.07 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+++|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999888877765
No 119
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.87 E-value=0.67 Score=53.85 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHH
Q psy5647 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEI 224 (755)
Q Consensus 146 ~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~ 224 (755)
.|-|.|+++|.. ..+.+++--..|+|||.+.+.-+..++..+.. ....+|+|+.+ .....-.+.+
T Consensus 2 ~L~~~Q~~av~~-----------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~---~~~~IL~lTfT~~Aa~em~~Rl 67 (673)
T 1uaa_A 2 RLNPGQQQAVEF-----------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---QARHIAAVTFTNKAAREMKERV 67 (673)
T ss_dssp CCCHHHHHHHHC-----------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC---CGGGEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC---CHHHeEEEeccHHHHHHHHHHH
Confidence 477999999963 23456677799999999999988888765321 12568999987 4444455555
Q ss_pred HHHhC
Q psy5647 225 TKWLG 229 (755)
Q Consensus 225 ~kw~~ 229 (755)
.+.++
T Consensus 68 ~~~l~ 72 (673)
T 1uaa_A 68 GQTLG 72 (673)
T ss_dssp HHHSC
T ss_pred HHHcC
Confidence 55544
No 120
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.84 E-value=0.76 Score=47.93 Aligned_cols=28 Identities=14% Similarity=0.011 Sum_probs=24.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
..+.+|.-+.|+|||..+-+++..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4689999999999999998888777655
No 121
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.23 E-value=0.88 Score=44.58 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 153 EGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 153 egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
+.+..+.....+ ....+.+|.-+.|+|||..+-+++..+...
T Consensus 38 ~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 38 ELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 344444444332 246778999999999999998888777654
No 122
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=90.94 E-value=0.53 Score=54.14 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeec--CCcccccccC--CCCEEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS--KAGGCGLNLI--GANRLV 589 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt--~agg~GLNL~--~a~~vI 589 (755)
++.++||..+-..++.+.+.++ ....- ...+++..+|.+++++|. +.+. +|+++ ....+|||+. .+..||
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~--vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG--TIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC--EEEEETTSCC--------CCCCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc--EEEEEecCceeccccCCCCceEEEE
Confidence 4567888777777777776665 22222 434445568999999999 4433 44554 5889999996 577899
Q ss_pred EeCCCCCC
Q psy5647 590 MFDPDWNP 597 (755)
Q Consensus 590 ~~D~~WNp 597 (755)
+.-.|+-+
T Consensus 522 I~~lPfp~ 529 (620)
T 4a15_A 522 LAGLPFPR 529 (620)
T ss_dssp ESSCCCCC
T ss_pred EEcCCCCC
Confidence 98877643
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.91 E-value=0.39 Score=46.23 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=23.6
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
.+.+|.-+.|+|||..+-++...+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6789999999999999988887776543
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.58 E-value=1.6 Score=41.76 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=21.9
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
.+.+|.-+.|+|||..+-++...+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 458999999999999988887766543
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.94 E-value=0.92 Score=48.26 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHH-HhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 148 RPHQREGVKFMYE-CVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 148 rphQ~egv~~l~~-~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
|..+.+.+.-.+. ...+ ....+++|.-+.|+|||..+-+++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKN---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTT---CCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC---CCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4555555543333 2222 234568999999999999998888776553
No 126
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.82 E-value=0.96 Score=47.93 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 148 RPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 148 rphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~ 195 (755)
++.+++.+..+.+.+.... ..+.+.+|.-+.|+|||..|-++...+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4677777777776664322 2245799999999999999999887763
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.14 E-value=1.2 Score=47.18 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
....+++|.-+.|+|||..+-+++..+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999888877654
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.13 E-value=0.5 Score=45.89 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=17.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l 194 (755)
.++--.+|+|||..|+..+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4667789999999998876554
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.70 E-value=0.87 Score=47.59 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-+.|+|||..|-+++..+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999998887654
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.05 E-value=8.7 Score=40.47 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=20.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
..+|.-+.|+|||..+-+++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999998887776553
No 131
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.75 E-value=0.83 Score=48.58 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=22.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-+.|+|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999888765
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.56 E-value=1.4 Score=45.89 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=25.7
Q ss_pred CccEEEEeCCcccC-CC-ccHHHHHHHccccccEEEeecCCCc
Q psy5647 283 EVGLVLCDEGHRLK-NC-ESQTYQALMGLKAKRRVLLSGTPIQ 323 (755)
Q Consensus 283 ~~~lvIiDEaH~lK-n~-~s~~~~al~~l~~~~rllLTGTPiq 323 (755)
...+||+||+|.+. .. .....+.+.......++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 57899999999995 21 1222223333345677888877654
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.39 E-value=1.8 Score=47.42 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=24.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.+|.-+.|+|||..+-++...+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~ 158 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE 158 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence 56789999999999999988888776653
No 134
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.35 E-value=4 Score=39.27 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=73.7
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHHhCCCceEEEecCC---CHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGG---SKAE 244 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw~~~~~~~~~~~~~---~~~~ 244 (755)
..+..++--..|-|||-.|+++.......|. +++|+-=. .-...=..++.+-++ +.......+ ....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-------rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~ 97 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-------NVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQN 97 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-------CEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGG
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCC
Confidence 3456888999999999999999999887763 47777311 111111112222222 221111111 0111
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccC----CCccHHHHHHHccccccEEEeecC
Q psy5647 245 IDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK----NCESQTYQALMGLKAKRRVLLSGT 320 (755)
Q Consensus 245 ~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lK----n~~s~~~~al~~l~~~~rllLTGT 320 (755)
........ -..+......+....+|+||+||.-..- -........+..-....-++|||-
T Consensus 98 ~~~~~~~a----------------~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 98 READTAAC----------------MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp HHHHHHHH----------------HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred cHHHHHHH----------------HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 00000000 1222333345566789999999984421 122445555555566677999997
Q ss_pred CCcCCHHHHHHhhhhh
Q psy5647 321 PIQNDLLEYFSLVHFV 336 (755)
Q Consensus 321 PiqN~l~El~sll~fl 336 (755)
-.. .+|..+.+++
T Consensus 162 ~ap---~~l~e~AD~V 174 (196)
T 1g5t_A 162 GCH---RDILDLADTV 174 (196)
T ss_dssp SCC---HHHHHHCSEE
T ss_pred CCc---HHHHHhCcce
Confidence 544 4444444443
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.18 E-value=2 Score=41.69 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=21.0
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+|.-+.|+|||..+-+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789999999999988888766653
No 136
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.68 E-value=6 Score=39.24 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|.+|.-+.|+|||..+-++...+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999988887654
No 137
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.48 E-value=2.8 Score=43.70 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
..+|++|.-+.|+|||..|-+++..+. + .+++.|....++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~--~-------~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEAN--N-------STFFSISSSDLVSK 85 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT--S-------CEEEEEECCSSCCS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcC--C-------CcEEEEEhHHHHhh
Confidence 357899999999999999988876541 1 23555555555543
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.09 E-value=2.1 Score=44.14 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
+.+|.-+.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 589999999999999988887664
No 139
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=84.97 E-value=4.3 Score=41.98 Aligned_cols=40 Identities=5% Similarity=-0.021 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 151 QREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
|.+.+..+...+.. ......|+.-+.|.|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~---~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEK---SEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHC---CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 45566666555432 12346889999999999998888764
No 140
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=84.96 E-value=5.9 Score=43.21 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=22.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
-++++-..|.|||.++..++..+...+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 356677899999999999998887654
No 141
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.68 E-value=0.96 Score=46.05 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....|.+|.-+.|+|||..+-+++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35678999999999999988887654
No 142
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.59 E-value=1.4 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.4
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~ 195 (755)
.+.+|.-+.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999988887764
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.25 E-value=4.1 Score=40.80 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~ 193 (755)
...+.+|.-+.|+|||..|-++...
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4578999999999999887776543
No 144
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.14 E-value=1.8 Score=44.56 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~ 196 (755)
..+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcC
Confidence 4899999999999998888877643
No 145
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.56 E-value=10 Score=41.19 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
++++-..|.|||-++..++..+...+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 56677899999999999998887654
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.35 E-value=1.5 Score=47.23 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=35.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...+|++|.-..|+|||+.|=|++..+- .+++.|..+.++..|.-|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~~----------~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHTD----------CKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHHT----------CEEEEEEGGGGSCSSTTH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhhC----------CCceEEEhHHhhccccch
Confidence 4578999999999999999999887652 236777777877766433
No 147
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.26 E-value=1.9 Score=46.22 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
...+++|.-+.|+|||..|-+++..+ + .+++.|.+..+...|
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~---~-------~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES---N-------ATFFNISAASLTSKY 188 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT---T-------CEEEEECSCCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh---c-------CcEEEeeHHHhhccc
Confidence 35789999999999999988876442 1 235666666665444
No 148
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.18 E-value=4.8 Score=47.30 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=23.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5677999999999999999888877654
No 149
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.14 E-value=4.1 Score=42.91 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=23.4
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHc
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQ 197 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~ 197 (755)
....++|.-+.|+|||..+-+++..+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45678899999999999988887766544
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=81.49 E-value=2.8 Score=44.21 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.7
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~ 195 (755)
+..++.-+.|+|||..+-+++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999988877664
No 151
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.28 E-value=6.6 Score=41.85 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHH-HHh-hcccccCCcCeEE--EcCCCCcHHHHHHHHHHHHHH
Q psy5647 148 RPHQREGVKFMY-ECV-TGVRIEDAYGCIM--ADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 148 rphQ~egv~~l~-~~~-~g~~~~~~~g~IL--ADemGlGKTlqaIall~~l~~ 196 (755)
|..+.+.+.-++ ... .|.. .....+++ .-+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 445555555444 322 1100 12345667 789999999988888766544
No 152
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.94 E-value=1.8 Score=44.61 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-+.|+|||..|-+++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999988776
No 153
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.50 E-value=8.2 Score=36.59 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
--|.|||..++.+++.+.+.| +++++|-
T Consensus 10 kgG~GKTt~a~~la~~la~~g-------~~vlliD 37 (206)
T 4dzz_A 10 KGGSGKTTAVINIATALSRSG-------YNIAVVD 37 (206)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCccHHHHHHHHHHHHHHCC-------CeEEEEE
Confidence 348999999999999998765 3467765
No 154
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.94 E-value=5.9 Score=39.81 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=21.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....+.+|.-+.|+|||..|-++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34567899999999999999888765
No 155
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.25 E-value=11 Score=40.04 Aligned_cols=46 Identities=9% Similarity=0.047 Sum_probs=35.1
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
..+.-.+++-+.|+|||.-|+.++..+...+ .++++|.......+|
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g-------~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAG-------GTCAFIDAEHALDPV 117 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCC-------CeEEEEECCCChhHH
Confidence 3455678899999999999999998877654 247888877666665
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=79.06 E-value=24 Score=38.51 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=61.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH-HHhCCCceEEEecCC-CHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT-KWLGGRVAALPIDGG-SKAEID 246 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~-kw~~~~~~~~~~~~~-~~~~~~ 246 (755)
.+.=++|+-..|.|||.-++.++..+..... .+++++....-..++...+. ...+-....+ ..|. ...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l-~~g~l~~~~~- 273 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMSAQQLVMRMLCAEGNINAQNL-RTGKLTPEDW- 273 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSCHHHHHHHHHHHHHTCCHHHH-HTSCCCHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCCHHHHHHHHHHHHcCCCHHHH-hcCCCCHHHH-
Confidence 4445799999999999999999887765321 24788876544444443332 1112111000 0111 11111
Q ss_pred HHHHHHHHHhCCCCCCCEEEE-----ehhhHhhhhhhh-hcCCccEEEEeCCcccCC
Q psy5647 247 NKLNSFMQTYGRRPVNPILVI-----SYETFRSHASVL-HKNEVGLVLCDEGHRLKN 297 (755)
Q Consensus 247 ~~l~~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l-~~~~~~lvIiDEaH~lKn 297 (755)
..+.......+ ..++.|. |.+.++.....+ ...++++||+|+.+.+..
T Consensus 274 ~~~~~a~~~l~---~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 274 GKLTMAMGSLS---NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHH---SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHh---cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 12222211111 1245553 333444333333 245799999999999874
No 157
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.55 E-value=1.9 Score=47.02 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=34.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~ 222 (755)
...+|++|.-+.|+|||+.|-+++..+- .+++.|..+.++..|.-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~----------~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG----------ANFIFSPASGIVDKYIG 257 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT----------CEEEEEEGGGTCCSSSS
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC----------CCEEEEehhhhccccch
Confidence 4578999999999999999999887652 23677777777766633
No 158
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=77.81 E-value=2.7 Score=46.09 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
..+|.+|.-+.|+|||..|-+++..+. + .+++.|....++..|
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~--~-------~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN--N-------STFFSISSSDLVSKW 208 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC--S-------SEEEEECCC------
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC--C-------CCEEEEeHHHHHhhh
Confidence 457899999999999999988876540 1 235556665555443
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.70 E-value=6.6 Score=46.85 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+.+|.-+.|+|||..+-+++..+..
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567899999999999999988877755
No 160
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.19 E-value=4 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=19.9
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l 194 (755)
.+.||.-+.|+|||..+-++...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999998888776543
No 161
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.92 E-value=5.4 Score=46.58 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=43.3
Q ss_pred hcCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 144 ~~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
-..|-|.|+++|.. ..+.+++-...|+|||.+.+.-+..++..... ....+|+|+.+.
T Consensus 9 l~~Ln~~Q~~av~~-----------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~---~p~~IL~vTFTn 66 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT-----------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV---APWNILAITFTN 66 (724)
T ss_dssp HTTSCHHHHHHHHC-----------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC---CGGGEEEEESSH
T ss_pred HhhCCHHHHHHHhC-----------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC---CHHHeEEEeccH
Confidence 35788999999963 23456666789999999999988888875322 125689998874
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.92 E-value=4.1 Score=41.66 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
..+|.-+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 489999999999999988887764
No 163
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=76.78 E-value=17 Score=38.42 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=32.0
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSL 216 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sl 216 (755)
..+.-.+++-+.|+|||..|+.++..+...+ .++++|.....
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyid~E~s 102 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHA 102 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEeCCCC
Confidence 3455688999999999999999998887654 23777776543
No 164
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.48 E-value=30 Score=37.53 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCC-CceEEEecCC-CHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGG-SKAEID 246 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~-~~~~~~~~~~-~~~~~~ 246 (755)
.+.=++++-..|.|||.-++.++........ .+++++..-.-..++...+.....+ ....+. .+. +..+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~-~g~l~~~~~- 270 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVR-LGQLTDRDF- 270 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCC-GGGCCHHHH-
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh-CCCCCHHHH-
Confidence 3444789999999999999999887765321 3478888765455555443322111 110000 111 11221
Q ss_pred HHHHHHHHHhCCCCCCCEEEE-----ehhhHhhhhhhh-hcCCccEEEEeCCcccCCC
Q psy5647 247 NKLNSFMQTYGRRPVNPILVI-----SYETFRSHASVL-HKNEVGLVLCDEGHRLKNC 298 (755)
Q Consensus 247 ~~l~~~~~~~~~~~~~~VlI~-----sye~l~~~~~~l-~~~~~~lvIiDEaH~lKn~ 298 (755)
..+........ ..++.|. +.+.++.....+ ...++++||||..+.+...
T Consensus 271 ~~~~~a~~~l~---~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 271 SRLVDVASRLS---EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHHHHHHH---TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC
T ss_pred HHHHHHHHHHh---cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCC
Confidence 11111111111 1245553 333444333322 2457999999999998643
No 165
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.84 E-value=6.6 Score=35.72 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=21.5
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
+...+|.-+.|+|||..+-+++..+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456788899999999988887766653
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.50 E-value=2.1 Score=45.31 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~ 193 (755)
...+++|.-+.|+|||..|-+++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998888654
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.53 E-value=9 Score=39.91 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
..+|.-+.|+|||..+-+++..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 378999999999999998887765
No 168
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=72.98 E-value=3.2 Score=42.60 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.7
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+|.-+.|+|||..|-++...+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789999999999999888876654
No 169
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.76 E-value=5.5 Score=44.48 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.3
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l 194 (755)
..+.+|.-+.|+|||..|-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999998887665
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=72.39 E-value=20 Score=37.62 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=33.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
..+.-.+++-+.|+|||..++.++..+...+ .+++++.-.....++
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g-------~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAG-------GIAAFIDAEHALDPE 104 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEECCCCcCHH
Confidence 3445578899999999999999998877654 246777766544444
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=71.11 E-value=20 Score=39.46 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=56.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC-cchHhHHHHHHHHhCCCceEEEe------c--CCCH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGGRVAALPI------D--GGSK 242 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~-sll~nW~~E~~kw~~~~~~~~~~------~--~~~~ 242 (755)
...|.--.|+|||+.+.+++... .+++|||||. ....+|.+++..|+|..+..+.. + ....
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~----------~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~ 85 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERH----------AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ 85 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHS----------SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCH
T ss_pred eEEEeCCCchHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCCh
Confidence 45678889999999888776331 1358999999 66789999999998865222221 1 1122
Q ss_pred HHHHHHHHHHHHHhCCCCCCCEEEEehhhHhh
Q psy5647 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRS 274 (755)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~ 274 (755)
+....++.....-.. ....|+|+|.+.+..
T Consensus 86 ~~~~~Rl~~l~~L~~--~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 86 DIISSRLSTLYQLPT--MQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHHHHGGG--CCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHHHHHHh--CCCCEEEEEHHHHhh
Confidence 222233333322111 223699999988764
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.57 E-value=10 Score=38.42 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=21.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...+.+|.-+.|+|||..+-++...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999999988876543
No 173
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=70.43 E-value=51 Score=31.77 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.+.-.+|+-+.|+|||.-++.++..+...+ .+++++.-.....+....+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-------~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-------EPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEEccCCHHHHHHHH
Confidence 444568888999999999999888777653 2377777654444443333
No 174
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.60 E-value=10 Score=33.93 Aligned_cols=77 Identities=9% Similarity=-0.049 Sum_probs=40.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhCCCceEEEecCCCHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN 247 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~~~~~~~~~~~~~~~~~~~ 247 (755)
....+.+|.-+.|+|||..|-++.... . +++.|....+...|...+.....+...++---+.-..+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~----~-------~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei~~l~~~~q~ 93 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG----T-------PWVSPARVEYLIDMPMELLQKAEGGVLYVGDIAQYSRNIQT 93 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT----S-------CEECCSSTTHHHHCHHHHHHHTTTSEEEEEECTTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC----C-------CeEEechhhCChHhhhhHHHhCCCCeEEEeChHHCCHHHHH
Confidence 356789999999999998776654211 1 24444444555555555444444332222211222233344
Q ss_pred HHHHHHHH
Q psy5647 248 KLNSFMQT 255 (755)
Q Consensus 248 ~l~~~~~~ 255 (755)
.+..++..
T Consensus 94 ~Ll~~l~~ 101 (143)
T 3co5_A 94 GITFIIGK 101 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 45555544
No 175
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.60 E-value=12 Score=38.54 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=20.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....+++|.-+.|+|||..|-++...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 34678999999999999888776543
No 176
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=68.69 E-value=19 Score=40.28 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCC-CCHHHHHHHHHHHccCCCceEEEeec--CCcccccccC-----C
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGS-MTIKKRAKVVETFNKTSNEFIFMLSS--KAGGCGLNLI-----G 584 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~-~~~~~R~~~v~~Fn~~~~~~v~LlSt--~agg~GLNL~-----~ 584 (755)
.++.+|||..+-..++.+.+ ..++++ ...|. ++ +.++++.|..+++. +|+++ ....+|||++ .
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v-~~q~~~~~---~~~~~~~~~~~~~~--vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPK-YVESEDSS---VEDLYSAISANNKV--LIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSE-EECCSSCC---HHHHHHHTTSSSSC--EEEEESSCCSCCSSCCEETTEES
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcE-EEcCCCCC---HHHHHHHHHhcCCe--EEEEEecceecccccccccCCcc
Confidence 45688888877777776665 234443 33443 33 45688889643332 44554 6889999999 4
Q ss_pred CCEEEEeCCCCCCCcHHHHhHhh
Q psy5647 585 ANRLVMFDPDWNPANDDQAMARV 607 (755)
Q Consensus 585 a~~vI~~D~~WNp~~~~Qa~gR~ 607 (755)
+..||+.-.|+-+. +-...+|.
T Consensus 463 l~~viI~~lPfp~~-dp~~~ar~ 484 (551)
T 3crv_A 463 ISDVVIVGIPYPPP-DDYLKILA 484 (551)
T ss_dssp EEEEEEESCCCCCC-SHHHHHHH
T ss_pred eeEEEEEcCCCCCC-CHHHHHHH
Confidence 78889998888544 44444444
No 177
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=68.55 E-value=22 Score=36.31 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~ 196 (755)
.++.-..|.|||-.+..++..+..
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 445567899999999988877764
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.37 E-value=41 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMW 192 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~ 192 (755)
.....++|.-+.|+|||..|-++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 3556799999999999998877653
No 179
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=65.79 E-value=83 Score=32.15 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=36.2
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEIT 225 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~ 225 (755)
..+.=++|+-..|.|||.-++.++.....++ .++++++.---..+....+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------CEEEEEESSSCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEECCCCHHHHHHHHH
Confidence 3444589999999999999998887776554 35888886644444444433
No 180
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.87 E-value=26 Score=45.42 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=36.4
Q ss_pred ccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 167 IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 167 ~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
+..+.+++|.-+.|+|||..|++++......+. +++++....++.+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~-------~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEHALDP 1469 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC-------CEEEECTTSCCCH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------cEEEEEcccccCH
Confidence 356788999999999999999999988776653 3788887765543
No 181
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=64.16 E-value=86 Score=33.92 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=36.2
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
.+.=+|+|-..|.|||.-++.++.....++ .++++++.---..++...+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g-------~~vl~fSlEms~~ql~~R~ 244 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND-------DVVNLHSLEMGKKENIKRL 244 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT-------CEEEEECSSSCTTHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC-------CEEEEEECCCCHHHHHHHH
Confidence 344589999999999999999998887653 3588888665444444443
No 182
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=63.92 E-value=9.8 Score=33.44 Aligned_cols=61 Identities=13% Similarity=-0.010 Sum_probs=44.2
Q ss_pred EEEEEechhHH-------HHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHc--------cCCCceEEEeecCCcc
Q psy5647 517 IVLVSNYTQTL-------DLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN--------KTSNEFIFMLSSKAGG 577 (755)
Q Consensus 517 vlIFs~~~~~l-------d~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn--------~~~~~~v~LlSt~agg 577 (755)
|+||+...... ..+..+|...|+.|..+|=+++...|.+++++.+ ...-+.||+-..-.||
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG 77 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGD 77 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEEE
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEec
Confidence 56676554332 5788899999999999999999999999999984 2234455654444444
No 183
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.68 E-value=24 Score=36.34 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~ 198 (755)
..+.-..|.|||..+..++..+...+
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 34566799999999998887776543
No 184
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.44 E-value=11 Score=41.61 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....|++|.-+.|+|||..|-++...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 45678999999999999988887644
No 185
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=62.97 E-value=12 Score=38.58 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.6
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHH-HcC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLL-RQG 198 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~-~~~ 198 (755)
..+.+|.-++|+|||..+.++...+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999998887 654
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=62.23 E-value=16 Score=38.16 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=34.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
.+.=.|||-..|.|||.-++.++..+...+ .+++++..---..+....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-------~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD-------RGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-------CEEEEEESSSCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------CeEEEEeCCCCHHHHHHH
Confidence 344489999999999999999988877643 458888876444444443
No 187
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=61.95 E-value=22 Score=36.88 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=31.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVK 218 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~ 218 (755)
-..++-+.|+|||.-++.++....+.++. .+++.|.....+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-----~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPD-----AVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTT-----CEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCC-----ceEEEEeccchhh
Confidence 36789999999999999999888775321 3477877764443
No 188
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=61.78 E-value=16 Score=40.24 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-++|+|||..+-++...+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999988877643
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=61.19 E-value=55 Score=34.36 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=31.1
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
+.-.+|.-+.|+|||.-+..++..+...+ .++++|.......+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEecccccch
Confidence 34467788999999999999888776544 24777877654443
No 190
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.39 E-value=4.4 Score=44.15 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=35.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...+|++|.-+.|+|||+.|=|++..+- .+++.|..+.++..|..|
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~----------~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN----------ATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT----------CEEEEEEGGGGCSSCSSH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC----------CCEEEEehhhhhhcccch
Confidence 4578999999999999999999887652 236777777877766433
No 191
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=59.83 E-value=27 Score=39.95 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=34.0
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+-+.|.+++..+.+...| -.+|--+-|-|||-.+-.++..+ . ..++|++|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~~-------~~vlta~RGRGKSa~lG~~~a~~-~---------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPPG-------VAAVTAARGRGKSALAGQLISRI-A---------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCSE-------EEEEEECTTSSHHHHHHHHHHHS-S---------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhhC-------eEEEecCCCCCHHHHHHHHHHHH-H---------hCcEEECCCH
Confidence 35678999999887654321 24666679999994443333332 1 1258888883
No 192
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=59.08 E-value=31 Score=40.44 Aligned_cols=93 Identities=9% Similarity=0.000 Sum_probs=61.2
Q ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEEEechhHHHH----HHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEE
Q psy5647 495 LSAKLMVLD-TMLAVIKMTTDDKIVLVSNYTQTLDL----FERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569 (755)
Q Consensus 495 ~S~Kl~~L~-~lL~~~~~~~~~KvlIFs~~~~~ld~----l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~ 569 (755)
-|||..+.. -++..+. .+.+++|.+........ +..++...|+++..++|+++.++|....+...++... |+
T Consensus 399 GSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~-Iv 475 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID-VV 475 (780)
T ss_dssp SSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC-EE
T ss_pred CCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC-EE
Confidence 477765433 3333333 36789999988765444 4444445589999999999999999999988775443 55
Q ss_pred EeecCCcccccccCCCCEEEE
Q psy5647 570 MLSSKAGGCGLNLIGANRLVM 590 (755)
Q Consensus 570 LlSt~agg~GLNL~~a~~vI~ 590 (755)
+.+.......+++.....||+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEE
T ss_pred EECHHHHhhhhhccCCceEEe
Confidence 555544444556666655555
No 193
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.88 E-value=22 Score=38.63 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=26.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEeC
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQ-GPLAKPLIDKAIIVAP 213 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~-~~~~~p~~~~~LIV~P 213 (755)
-.+++--.|.|||.++..++..+... + +++++|.-
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G-------~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHK-------KKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSC-------CCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC-------CeEEEEec
Confidence 34455678999999999999998876 5 34666653
No 194
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=58.87 E-value=53 Score=33.88 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=23.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
..+.-..|.|||..+..++..+...+ ++++++.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~~g-------~kVllid 140 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAELG-------YKVLIAA 140 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 34556799999999998888776554 3366664
No 195
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.95 E-value=27 Score=36.18 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=19.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLL 195 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~ 195 (755)
..+|.-+.|+|||..+-+++..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 388999999999998887776554
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.35 E-value=6.1 Score=42.78 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=35.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...+|++|.-..|+|||+.|-|++..+- .+++.|..+.++..|.-|
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~----------~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS----------ATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT----------CEEEEEESGGGCCSSSSH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC----------CCEEEEEHHHhhhccCch
Confidence 4568999999999999999999887652 236777777877766433
No 197
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.96 E-value=97 Score=29.03 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=20.1
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMW 192 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~ 192 (755)
..+.-.+|+-+.|+|||.-+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444578899999999998888876
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=56.96 E-value=13 Score=43.52 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccccCCc------CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHH
Q psy5647 151 QREGVKFMYECVTGVRIEDAY------GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEI 224 (755)
Q Consensus 151 Q~egv~~l~~~~~g~~~~~~~------g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~ 224 (755)
|.+++..+...+...+..... ..+|.-+.|+|||..|-++...+...+ .+++.|--+.+...+...
T Consensus 496 q~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~-------~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 496 QDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE-------ESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT-------TCEEEEEGGGGCSSCCCC-
T ss_pred hHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-------cceEEEechhcccccccc-
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHHHHhCCCCCCCEEEEehhhHhhhhhhhhcCCccEEEEeCCcccCCCccHHHH
Q psy5647 225 TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304 (755)
Q Consensus 225 ~kw~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~VlI~sye~l~~~~~~l~~~~~~lvIiDEaH~lKn~~s~~~~ 304 (755)
-......+....+++|++||++.+ .......
T Consensus 568 -----------------------------------------------~~~l~~~~~~~~~~vl~lDEi~~~--~~~~~~~ 598 (758)
T 3pxi_A 568 -----------------------------------------------GGQLTEKVRRKPYSVVLLDAIEKA--HPDVFNI 598 (758)
T ss_dssp --------------------------------------------------CHHHHHHCSSSEEEEECGGGS--CHHHHHH
T ss_pred -----------------------------------------------cchhhHHHHhCCCeEEEEeCcccc--CHHHHHH
Q ss_pred HHHcccccc--------------EEEeecC
Q psy5647 305 ALMGLKAKR--------------RVLLSGT 320 (755)
Q Consensus 305 al~~l~~~~--------------rllLTGT 320 (755)
.+.-+.... ++++|..
T Consensus 599 Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 599 LLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp HHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred HHHHhccCeEEcCCCCEeccCCeEEEEeCC
No 199
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.66 E-value=5.3 Score=43.67 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=35.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNE 223 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E 223 (755)
...+|+||.-..|+|||+.|-+++..+- .+++.|..+.++..|.-|
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~----------~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD----------ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT----------CEEEEEEGGGGCCCSSSH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC----------CCeEEEEhHHhhcccCCH
Confidence 5678999999999999999999887652 236777777777766433
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.13 E-value=6.2 Score=42.84 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=33.6
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
...+|++|.-+.|+|||+.|=|++..+- .+++.|..+.++..|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~----------~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK----------AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT----------CEEEEEEGGGTCCSS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC----------CCeEEEecchhhccc
Confidence 4578999999999999999999887652 236777777777655
No 201
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=54.33 E-value=42 Score=28.27 Aligned_cols=47 Identities=28% Similarity=0.295 Sum_probs=42.2
Q ss_pred EEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc
Q psy5647 516 KIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK 562 (755)
Q Consensus 516 KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~ 562 (755)
-.++||.-...|.-|..-++..|..++.+......+.|.+.++.|..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 46889999999998888889999999999999999999999999976
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.32 E-value=58 Score=33.08 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=23.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
.+.-..|.|||-.+..++..+...+ ++++++.
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~~~-------~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKGKG-------RRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEec
Confidence 3456789999999998887776543 2356665
No 203
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=53.83 E-value=17 Score=45.10 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=45.6
Q ss_pred cCCcHHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch
Q psy5647 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217 (755)
Q Consensus 145 ~~LrphQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll 217 (755)
..|-|-|.++|. ..++..++.-.-|+|||.+.+.-+..++..+... ....++|+|+++...
T Consensus 9 ~~~t~eQ~~~i~-----------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~-~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 9 STWTDDQWNAIV-----------STGQDILVAAAAGSGKTAVLVERMIRKITAEENP-IDVDRLLVVTFTNAS 69 (1232)
T ss_dssp -CCCHHHHHHHH-----------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSC-CCGGGEEEECSSHHH
T ss_pred CCCCHHHHHHHh-----------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCC-CCccceEEEeccHHH
Confidence 468899999986 3466788899999999999998877777664311 124679999998433
No 204
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=53.24 E-value=14 Score=40.27 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhhcccccCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhH
Q psy5647 149 PHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNW 220 (755)
Q Consensus 149 phQ~egv~~l~~~~~g~~~~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW 220 (755)
...++.+..+.+.+.... ...+|++|.-+.|+|||..|-++...+-.. .+++.|..+.+...|
T Consensus 43 ~~~~~~l~~~~~~~~~~~-~~~~~iLl~GppGtGKT~la~ala~~l~~~--------~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKK-MAGRAVLLAGPPGTGKTALALAIAQELGSK--------VPFCPMVGSEVYSTE 105 (456)
T ss_dssp HHHHHHHHHHHHHHHTTC-CTTCEEEEECCTTSSHHHHHHHHHHHHCTT--------SCEEEEEGGGGCCSS
T ss_pred HHHHHHHHHHHHHHHhCC-CCCCeEEEECCCcCCHHHHHHHHHHHhCCC--------ceEEEEeHHHHHHHh
Confidence 444444444443332111 245789999999999999999988775211 124555555554444
No 205
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=52.65 E-value=15 Score=35.40 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.3
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
|..-..|.|||..++.++..+.++| ++++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G-------~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG-------YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT-------CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-------CCEEEEcc
Confidence 4555679999999999999998876 34777765
No 206
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.35 E-value=47 Score=35.19 Aligned_cols=94 Identities=13% Similarity=0.030 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL---RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~---~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
.|||-....-.+.... ..+.++||.+........+.+.++. .|+++..+.|+++..+|....+.+..+.. .|++.
T Consensus 46 GsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~-~Iiv~ 123 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY-HILVF 123 (414)
T ss_dssp SSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCC-SEEEE
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCC-CEEEE
Confidence 3677653322222221 3577999999998887777777766 58899999999999888888888876433 36666
Q ss_pred ecCCcccc---cccCCCCEEEE
Q psy5647 572 SSKAGGCG---LNLIGANRLVM 590 (755)
Q Consensus 572 St~agg~G---LNL~~a~~vI~ 590 (755)
+....-.- +++...+.||+
T Consensus 124 Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 124 STQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EHHHHHHCHHHHTTCCCSEEEE
T ss_pred CHHHHHHHHHHhccccccEEEE
Confidence 65544221 33445555544
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.89 E-value=1.2e+02 Score=28.80 Aligned_cols=26 Identities=38% Similarity=0.300 Sum_probs=20.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
..+.-..|.-+.|+|||..+..++..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34445678889999999998888765
No 208
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=51.73 E-value=19 Score=42.27 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.1
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
....|++|.-..|+|||+.|-+++..
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHH
Confidence 45679999999999999998888754
No 209
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.91 E-value=60 Score=27.56 Aligned_cols=57 Identities=5% Similarity=-0.017 Sum_probs=39.1
Q ss_pred CCEEEEEEe------chhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 514 DDKIVLVSN------YTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 514 ~~KvlIFs~------~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
..+|+||+. +-..-.....+|...|++|..+|=......|..+.+.-....-+.||+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 579999996 334466778889999999988876666666665555444344554554
No 210
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=48.87 E-value=57 Score=27.51 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=39.9
Q ss_pred CCEEEEEEec------hhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 514 DDKIVLVSNY------TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 514 ~~KvlIFs~~------~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
..+|+||+.. =..-.....+|...|++|..++=......+..+.+......-+.||+
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi 79 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYI 79 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEE
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEE
Confidence 5799999984 45677888889999999988876555566666555544444454554
No 211
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.42 E-value=19 Score=35.38 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.9
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.-..++.-..|.|||..++.+...+..+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 446888999999999999999999988763
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=47.67 E-value=55 Score=35.28 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=24.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
..++-..|.|||..+..++..+...+ ++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g-------~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG-------RRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEeec
Confidence 44567899999999999888776543 23666653
No 213
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.33 E-value=90 Score=39.84 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=33.5
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHh
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~n 219 (755)
..+..++|+-+.|.|||.-++.++..+...+ .+++++.-.....+
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g-------~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDP 774 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcC-------CCeEEEeccchHHH
Confidence 3455689999999999999999998877654 24777776544444
No 214
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=46.32 E-value=28 Score=41.38 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=22.1
Q ss_pred cCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 171 YGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 171 ~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+|.-+.|+|||..|-++...+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46789999999999999988877754
No 215
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=45.94 E-value=26 Score=36.26 Aligned_cols=17 Identities=35% Similarity=0.220 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHHHHHHH
Q psy5647 180 GLGKTLQCITLMWTLLR 196 (755)
Q Consensus 180 GlGKTlqaIall~~l~~ 196 (755)
|+|||=.++.++..+..
T Consensus 48 GTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 48 GSGKTSFVMYLADLLKD 64 (315)
T ss_dssp CCSHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999999887743
No 216
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=45.46 E-value=15 Score=36.04 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPL 200 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~ 200 (755)
.|-+-++|.|||..+.+++..+.++|..
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~~ 35 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNIK 35 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCCe
Confidence 4667889999999999999999988743
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=45.01 E-value=87 Score=40.67 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=36.7
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWC 221 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~ 221 (755)
.+.-.+|+-+.|.|||.-|+.++..+...+ .++++|.-.....+|.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~g-------~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT-------CCEEEECTTSCCCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC-------CcEEEEECCCcHHHHH
Confidence 445579999999999999999988776532 3488888887788885
No 218
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=44.39 E-value=60 Score=34.57 Aligned_cols=90 Identities=11% Similarity=0.082 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHhc-CC---cEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR-GY---KYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~-g~---~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
.+||-.....++.......+.++||++.....+..+.+.+... +. .+..++|+....++...... ..|++
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~ivv 106 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVIV 106 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CCEEE
Confidence 3667655444433332245789999999887777666555544 66 89999999988776555432 23566
Q ss_pred eecCCccc-----ccccCCCCEEEE
Q psy5647 571 LSSKAGGC-----GLNLIGANRLVM 590 (755)
Q Consensus 571 lSt~agg~-----GLNL~~a~~vI~ 590 (755)
.+...... .+++...+.||+
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred ecHHHHHHHHhcCCcchhhceEEEE
Confidence 66544332 244555555555
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.80 E-value=87 Score=34.54 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=26.4
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 172 g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
-+.++--.|.|||-.+..++..+...+ +++++|..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G-------~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKG-------WKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC-------CeEEEEec
Confidence 355566689999999999998887664 24677765
No 220
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=43.29 E-value=1.1e+02 Score=26.41 Aligned_cols=63 Identities=11% Similarity=0.000 Sum_probs=42.1
Q ss_pred CCEEEEEEec------hhHHHHHHHHHHhcCCc---EEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCc
Q psy5647 514 DDKIVLVSNY------TQTLDLFERLSKLRGYK---YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576 (755)
Q Consensus 514 ~~KvlIFs~~------~~~ld~l~~~L~~~g~~---~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ag 576 (755)
..+|+||+.. =..-....++|...|+. |..++=......|..+.+......-+.||+-..-.|
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~~iG 86 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKEFIG 86 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTEEEE
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEe
Confidence 5799999984 44567778888889998 877776666666666655544445555554333333
No 221
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.91 E-value=17 Score=35.98 Aligned_cols=27 Identities=26% Similarity=0.065 Sum_probs=24.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.|-+-++|.|||..+.+++..+.++|.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 467889999999999999999998874
No 222
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=41.14 E-value=81 Score=27.32 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCEEEEEEech------hHHHHHHHHHHhcCC-cEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCCccc
Q psy5647 514 DDKIVLVSNYT------QTLDLFERLSKLRGY-KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGC 578 (755)
Q Consensus 514 ~~KvlIFs~~~------~~ld~l~~~L~~~g~-~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~agg~ 578 (755)
..+||||+..+ ..-....++|...|+ +|..++=....+-|+.+.+.-+...-+.||+--.-.||.
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG~ 90 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGGC 90 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEECH
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECCH
Confidence 46999998643 345566778888888 588887766676676666655545667777655555543
No 223
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=40.89 E-value=53 Score=27.00 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=31.1
Q ss_pred hcCCcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCccccccc--CCCCEEEEeCCCCCCCcHHHHhHhhh
Q psy5647 536 LRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNL--IGANRLVMFDPDWNPANDDQAMARVW 608 (755)
Q Consensus 536 ~~g~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg~GLNL--~~a~~vI~~D~~WNp~~~~Qa~gR~~ 608 (755)
...+..+.+|-.++...-.++++..+. .+...++++|...... ... .+|+..+ .-|.++....+++.++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l--~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV--VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp HSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE--ECCSSTHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE--ECCCCHHHHHHHHHHHh
Confidence 345666666655442222334444433 2333455555432211 111 2333332 34556666666655543
No 224
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.87 E-value=25 Score=34.06 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=25.1
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
|.+-.-|.|||..++.+++.+.+.+ +++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG-------RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeC
Confidence 3445569999999999999998765 34777764
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.60 E-value=15 Score=43.21 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.8
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWT 193 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~ 193 (755)
...+|++|.-..|+|||+.|=+++..
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999998877643
No 226
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=40.59 E-value=39 Score=27.46 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=38.6
Q ss_pred EEEEEEechhH-H------HHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc--CCCceEEE
Q psy5647 516 KIVLVSNYTQT-L------DLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK--TSNEFIFM 570 (755)
Q Consensus 516 KvlIFs~~~~~-l------d~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~--~~~~~v~L 570 (755)
+|+||+...-. - .....+|...|+.|..+|=......|..+.+.... ..-+.||+
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi 66 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVN 66 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEE
Confidence 67888764322 3 57778899999999999988887778777777652 24454443
No 227
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=40.01 E-value=67 Score=27.11 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=39.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHcc-CCCceEEEeecCCcc-----cc-cccCCCCEEEEeCCCCCCCcHHHHhHhhhccC
Q psy5647 539 YKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGG-----CG-LNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611 (755)
Q Consensus 539 ~~~~~ldG~~~~~~R~~~v~~Fn~-~~~~~v~LlSt~agg-----~G-LNL~~a~~vI~~D~~WNp~~~~Qa~gR~~R~G 611 (755)
+..+.+|-.++...-.++++.++. .+...++++|..... .. ....++...-++.-|.++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 566677766665555556666654 344456666654331 11 11222333334445677777777777776554
Q ss_pred C
Q psy5647 612 Q 612 (755)
Q Consensus 612 Q 612 (755)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 4
No 228
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=39.97 E-value=18 Score=35.85 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.1
Q ss_pred CCCCcHHHHHHHHHHHHHHcC
Q psy5647 178 EMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~ 198 (755)
-=|.|||..++.++..+.+.|
T Consensus 9 KGGvGKTT~a~nLA~~la~~G 29 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMG 29 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHHHCC
Confidence 459999999999999988665
No 229
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=39.91 E-value=21 Score=35.65 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGP 199 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~ 199 (755)
.|-+-++|.|||..+++++..+.++|.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 467889999999999999999988874
No 230
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=39.80 E-value=13 Score=36.24 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
--|.|||..++.+++.+.+.| +++|+|-
T Consensus 8 kGGvGKTt~a~~LA~~la~~g-------~~VlliD 35 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIMASDY-------DKIYAVD 35 (254)
T ss_dssp SSSHHHHHHHHHHHHHHTTTC-------SCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 459999999999999987665 3466664
No 231
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=39.01 E-value=16 Score=37.61 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=21.0
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l 194 (755)
+++++|.-+.|+|||..+-++...+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999999888776543
No 232
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=38.74 E-value=21 Score=36.90 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
|.|||-+++-+...|.+.|. ++|+|=
T Consensus 58 GVGKTTtavNLA~aLA~~Gk-------kVllID 83 (314)
T 3fwy_A 58 GIGKSTTSSNLSAAFSILGK-------RVLQIG 83 (314)
T ss_dssp TSSHHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred ccCHHHHHHHHHHHHHHCCC-------eEEEEe
Confidence 89999999999999988873 466664
No 233
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.24 E-value=21 Score=36.32 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.3
Q ss_pred cCCCCcHHHHHHHHHHHHHHcC
Q psy5647 177 DEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 177 DemGlGKTlqaIall~~l~~~~ 198 (755)
---|.|||..++.++..+.+.|
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G 69 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILG 69 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHHHHCC
Confidence 4669999999999999998775
No 234
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=38.21 E-value=31 Score=34.00 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.0
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
|.+-.-|.|||..++.+++.+.+.+ +++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG-------HDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 4455669999999999999998765 3477775
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.95 E-value=71 Score=32.47 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P 213 (755)
..+.-..|.|||..+..++..+...+ ++++++.-
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~~g-------~~v~l~~~ 134 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKKKG-------FKVGLVGA 134 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHHTT-------CCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-------CeEEEEec
Confidence 34556889999999998888776554 23566653
No 236
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=37.91 E-value=22 Score=36.02 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.8
Q ss_pred cCCCCcHHHHHHHHHHHHHHcC
Q psy5647 177 DEMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 177 DemGlGKTlqaIall~~l~~~~ 198 (755)
---|.|||..++.++..+.+.|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G 65 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN 65 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHHHhCC
Confidence 3669999999999999888765
No 237
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=37.72 E-value=47 Score=32.03 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWC 221 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~ 221 (755)
.+.=.+++-+.|+|||.-|+-++......+. .+++++.-..-..+..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~------~~v~~~s~E~~~~~~~ 75 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG------EPGVFVTLEERARDLR 75 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC------CCEEEEESSSCHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC------CCceeecccCCHHHHH
Confidence 3445799999999999999988876543321 2367777554433333
No 238
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=37.54 E-value=29 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=23.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
..---|.|||..++.+++.+.+.| +++|+|-
T Consensus 8 ~s~kgGvGKTt~a~~LA~~la~~g-------~~VlliD 38 (260)
T 3q9l_A 8 TSGKGGVGKTTSSAAIATGLAQKG-------KKTVVID 38 (260)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 344559999999999999998765 3467764
No 239
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=37.43 E-value=23 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHHHHHHHcC
Q psy5647 178 EMGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 178 emGlGKTlqaIall~~l~~~~ 198 (755)
--|.|||..++.++..+.+.|
T Consensus 10 KGGvGKTT~a~nLA~~La~~G 30 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMG 30 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHHHHHCC
Confidence 559999999999999998765
No 240
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=37.21 E-value=1.7e+02 Score=27.35 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=39.9
Q ss_pred hhhhHHHH-HHHHHHHhcc-CCCEEEEEEechhHHHHHHHHHHhc-----CCcEEEEcCCCCHHHHHHHH
Q psy5647 495 LSAKLMVL-DTMLAVIKMT-TDDKIVLVSNYTQTLDLFERLSKLR-----GYKYVRLDGSMTIKKRAKVV 557 (755)
Q Consensus 495 ~S~Kl~~L-~~lL~~~~~~-~~~KvlIFs~~~~~ld~l~~~L~~~-----g~~~~~ldG~~~~~~R~~~v 557 (755)
.+||.... .-++..+... .+.++||.+........+.+.++.. ++++..+.|+.+..++.+.+
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 36676432 2333333322 2348999999888777666655543 78899999998876654443
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=37.18 E-value=1.4e+02 Score=30.42 Aligned_cols=47 Identities=23% Similarity=0.209 Sum_probs=30.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+.-.+++-+.|+|||.-+..++.........+. ...++++|.-..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg-~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG-LSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC-CCCeEEEEECCC
Confidence 34555789999999999999988876432211111 124577777654
No 242
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=36.70 E-value=30 Score=33.51 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=22.3
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...++.++.-..|+|||..|.+++..+
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568889999999999999988765
No 243
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=36.15 E-value=62 Score=25.58 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHhccCCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCC
Q psy5647 505 MLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSM 548 (755)
Q Consensus 505 lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~ 548 (755)
.+..+....+.++||+|+.-.........|...|++ +..+ |++
T Consensus 32 ~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~ 75 (85)
T 2jtq_A 32 RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGL 75 (85)
T ss_dssp HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EET
T ss_pred HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCH
Confidence 334442345789999999876677778888999996 4444 664
No 244
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=36.00 E-value=32 Score=34.11 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=24.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
+..---|.|||..++.++..+.+.| +++|+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G-------~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG-------KKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 3445669999999999999998765 3477765
No 245
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=35.01 E-value=34 Score=42.20 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=37.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcchHhHHHHHHHHhC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll~nW~~E~~kw~~ 229 (755)
.|+| ..|+|||.+++.-+..++..++. ..++|++||.....+-...+.+.++
T Consensus 5 lV~a-gAGSGKT~~l~~ri~~ll~~~~~----~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVG-RSGSGKTKLIINSIQDELRRAPF----GKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEE-CTTSSHHHHHHHHHHHHHHHCTT----SSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEe-CCCCChHHHHHHHHHHHHHhCCC----CCcEEEEecCcccHHHHHHHHHhhh
Confidence 3444 57999999999999888877642 2568999999876654445544443
No 246
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=34.93 E-value=36 Score=27.85 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=8.3
Q ss_pred CCCCCCcHHHHhHhhh
Q psy5647 593 PDWNPANDDQAMARVW 608 (755)
Q Consensus 593 ~~WNp~~~~Qa~gR~~ 608 (755)
-|.++....+++.++.
T Consensus 101 kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 101 KPLDPQLLLTTLQGLC 116 (119)
T ss_dssp SCSTTHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3455555555555443
No 247
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=34.55 E-value=37 Score=34.61 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=24.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
..-..|.|||..++.++..+...+ +++|+|-
T Consensus 110 ts~kgG~GKTtva~nLA~~lA~~G-------~rVLLID 140 (299)
T 3cio_A 110 TGATPDSGKTFVSSTLAAVIAQSD-------QKVLFID 140 (299)
T ss_dssp EESSSSSCHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 345679999999999999988765 3477774
No 248
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=34.39 E-value=94 Score=26.75 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCEEEEEEec------hhHHHHHHHHHHhcCCc-EEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 514 DDKIVLVSNY------TQTLDLFERLSKLRGYK-YVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 514 ~~KvlIFs~~------~~~ld~l~~~L~~~g~~-~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
..+|+||+.. =..-....++|...|++ |..++=......+..+.+......-+.||+
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI 82 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEE
Confidence 4689999984 45567788889999995 888876666666666555444444554554
No 249
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=34.20 E-value=23 Score=35.19 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=21.7
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 176 ADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
.---|.|||..++.+++.+. +| +++|+|=
T Consensus 34 s~kGGvGKTT~a~~LA~~la-~g-------~~VlliD 62 (267)
T 3k9g_A 34 SIKGGVGKSTSAIILATLLS-KN-------NKVLLID 62 (267)
T ss_dssp CSSSSSCHHHHHHHHHHHHT-TT-------SCEEEEE
T ss_pred eCCCCchHHHHHHHHHHHHH-CC-------CCEEEEE
Confidence 44559999999999999887 54 3466664
No 250
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=33.83 E-value=1.1e+02 Score=26.11 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=13.6
Q ss_pred CEEEEEEechhHHHHHHHHHHhcCCcE
Q psy5647 515 DKIVLVSNYTQTLDLFERLSKLRGYKY 541 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~l~~~L~~~g~~~ 541 (755)
.+|+|+.........+...|...|+.+
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v 31 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNV 31 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEE
Confidence 345555555555555555555544443
No 251
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=33.68 E-value=34 Score=34.47 Aligned_cols=26 Identities=23% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...+.+|.-+.|+|||..+-++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999988887665
No 252
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.39 E-value=37 Score=34.98 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=26.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
++..---|.|||..|.++++.+.+.| +++|+|-.-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G-------~rVLlvD~D 51 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSG-------KKTLVISTD 51 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEECC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC-------CcEEEEeCC
Confidence 34556779999999999999998775 347777643
No 253
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=33.14 E-value=47 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVR 543 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ 543 (755)
+.+|+|+.........+...|...|+.+..
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~ 35 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEI 35 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEE
Confidence 457777777777777777777777775543
No 254
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=32.77 E-value=24 Score=37.16 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 180 GlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
|.|||..++.+++.+.+.| ++||+|=
T Consensus 12 GvGKTT~a~nLA~~LA~~G-------~rVLlID 37 (361)
T 3pg5_A 12 GVGKTTLSTNVAHYFALQG-------KRVLYVD 37 (361)
T ss_dssp CHHHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCcHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 8999999999999998765 3477774
No 255
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=32.69 E-value=60 Score=27.97 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.5
Q ss_pred CEEEEEEe-chhHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 515 DKIVLVSN-YTQTLDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 515 ~KvlIFs~-~~~~ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
.+|||+|. .-.........|+..|+.+..++|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 79999994 555556777888999999999999864
No 256
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=32.66 E-value=1.5e+02 Score=36.46 Aligned_cols=90 Identities=7% Similarity=-0.031 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHH----hcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK----LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~----~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
-+||..+.....-... ..+.+++|.+..+.......+.+. ..++.+..+.|..+.+++...++....+... |++
T Consensus 634 GsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~d-IvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID-ILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS-EEE
T ss_pred CCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC-EEE
Confidence 3677654332221111 346799999988876655544443 3468899999999999999898888775444 555
Q ss_pred eecCCcccccccCCCC
Q psy5647 571 LSSKAGGCGLNLIGAN 586 (755)
Q Consensus 571 lSt~agg~GLNL~~a~ 586 (755)
.+.......+++....
T Consensus 712 ~T~~ll~~~~~~~~l~ 727 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLG 727 (1151)
T ss_dssp ECTHHHHSCCCCSSEE
T ss_pred ECHHHHhCCccccccc
Confidence 5555554445554443
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=32.49 E-value=87 Score=31.38 Aligned_cols=41 Identities=10% Similarity=-0.021 Sum_probs=27.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCC
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~ 214 (755)
..+.=.+|+-..|.|||.-+..++..+..... .+++++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G------~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG------KKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC------CCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC------CeEEEEeCc
Confidence 34445678899999999988887776654411 136666544
No 258
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=32.28 E-value=97 Score=25.87 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=39.1
Q ss_pred CCEEEEEEech------hHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEE
Q psy5647 514 DDKIVLVSNYT------QTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569 (755)
Q Consensus 514 ~~KvlIFs~~~------~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~ 569 (755)
..+|+||+..+ ..-..+..+|...|+.|..++=......+..+.+......-+.+|
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 46799998832 245677788889999999998887776677666665444444343
No 259
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=32.23 E-value=40 Score=33.82 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=23.2
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 176 ADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
.-..|.|||..++.++..+.+.| +++|+|-
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~~G-------~rVLLID 118 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQAG-------YKTLIVD 118 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhCC-------CeEEEEe
Confidence 34579999999999999988765 3466663
No 260
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=32.14 E-value=32 Score=28.42 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=31.0
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSM 548 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~ 548 (755)
++.++|++|..-.........|...|+.+..++|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 467999999887777788889999999999999985
No 261
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=31.29 E-value=57 Score=32.73 Aligned_cols=25 Identities=16% Similarity=0.035 Sum_probs=21.2
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l 194 (755)
.++.+|.-+.|+|||+-+.+++..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4578899999999999999888653
No 262
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.28 E-value=1.7e+02 Score=24.06 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=39.3
Q ss_pred CCEEEEEEe------chhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEE
Q psy5647 514 DDKIVLVSN------YTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569 (755)
Q Consensus 514 ~~KvlIFs~------~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~ 569 (755)
..+|+||+. +=..-..+..+|...|+.|..++=......+..+...+....-+.+|
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 457999985 23456677888888999998888777776677776666544445444
No 263
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=31.14 E-value=44 Score=34.92 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=25.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
++..---|.|||..|.+++..+.+.| +++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G-------~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG-------LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS-------CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC-------CeEEEEe
Confidence 45556679999999999999998775 3467776
No 264
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=30.59 E-value=32 Score=29.01 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
.+.++|++|..-.........|+..|+.+..++|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4678999998877777888899999999999999863
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=30.59 E-value=46 Score=34.77 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...+.+|.-+.|+|||..|-++...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999988887654
No 266
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=30.52 E-value=1.2e+02 Score=26.71 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=39.7
Q ss_pred CEEEEEEe------chhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEE
Q psy5647 515 DKIVLVSN------YTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570 (755)
Q Consensus 515 ~KvlIFs~------~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~L 570 (755)
.+|+||+. +-..-..+..+|...|++|..++=......+..+.+......-+.||+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI 96 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWV 96 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEE
Confidence 58999987 334567788889999999988887767666666666554444454543
No 267
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.52 E-value=1.1e+02 Score=37.48 Aligned_cols=94 Identities=13% Similarity=0.030 Sum_probs=63.4
Q ss_pred hhhhHHHHHHHHHHHhccCCCEEEEEEechhHHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEe
Q psy5647 495 LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL---RGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFML 571 (755)
Q Consensus 495 ~S~Kl~~L~~lL~~~~~~~~~KvlIFs~~~~~ld~l~~~L~~---~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~Ll 571 (755)
.|||-.+..-.+.... ..+.++||.+..+.....+.+.++. .|+++..+.|+++..+|.+..+.+..+.. .|++.
T Consensus 103 GSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~-~IlV~ 180 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY-HILVF 180 (1104)
T ss_dssp TCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCC-SEEEE
T ss_pred CCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCC-CEEEE
Confidence 4777764433332222 3577999999999888877777777 57899999999998888888888876533 35666
Q ss_pred ecCCcccc---cccCCCCEEEE
Q psy5647 572 SSKAGGCG---LNLIGANRLVM 590 (755)
Q Consensus 572 St~agg~G---LNL~~a~~vI~ 590 (755)
+....-.- +++...+.||+
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEE
T ss_pred CHHHHHHHHHhhcccCcCEEEE
Confidence 65443111 34455555555
No 268
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.25 E-value=41 Score=32.57 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=23.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEe
Q psy5647 175 MADEMGLGKTLQCITLMWTLLRQ-GPLAKPLIDKAIIVA 212 (755)
Q Consensus 175 LADemGlGKTlqaIall~~l~~~-~~~~~p~~~~~LIV~ 212 (755)
..---|.|||..++.+++.+.+. | +++|+|-
T Consensus 10 ~s~kGGvGKTt~a~~LA~~la~~~g-------~~VlliD 41 (245)
T 3ea0_A 10 VSAKGGDGGSCIAANFAFALSQEPD-------IHVLAVD 41 (245)
T ss_dssp EESSTTSSHHHHHHHHHHHHTTSTT-------CCEEEEE
T ss_pred ECCCCCcchHHHHHHHHHHHHhCcC-------CCEEEEE
Confidence 34455999999999999998766 4 3466665
No 269
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=30.09 E-value=1.6e+02 Score=28.06 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=46.5
Q ss_pred hhhhHHH-HHHHHHHHhc-cCCCEEEEEEechhHHHHHHHHHHhc-----CCcEEEEcCCCCHHHHHHHHHHHccCCCce
Q psy5647 495 LSAKLMV-LDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLR-----GYKYVRLDGSMTIKKRAKVVETFNKTSNEF 567 (755)
Q Consensus 495 ~S~Kl~~-L~~lL~~~~~-~~~~KvlIFs~~~~~ld~l~~~L~~~-----g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~ 567 (755)
.+||-.. +.-++..+.. ..+.++||.+........+.+.++.. ++++..+.|+.+..++.+.+ + ...
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~ 144 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KCH 144 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SCS
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CCC
Confidence 4677654 3444444432 33568999999888777666666543 67889999998876554432 1 233
Q ss_pred EEEeecC
Q psy5647 568 IFMLSSK 574 (755)
Q Consensus 568 v~LlSt~ 574 (755)
|++.+..
T Consensus 145 Iiv~Tp~ 151 (230)
T 2oxc_A 145 IAVGSPG 151 (230)
T ss_dssp EEEECHH
T ss_pred EEEECHH
Confidence 5555554
No 270
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=30.03 E-value=32 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSM 548 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~ 548 (755)
.++++||+|..-.........|...|+.+..++|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 467899999987777778888999999999999985
No 271
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=30.02 E-value=2.5e+02 Score=27.09 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=50.8
Q ss_pred hhhhHHH-HHHHHHHHhcc-CCCEEEEEEechhHHHHHHHHH----HhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceE
Q psy5647 495 LSAKLMV-LDTMLAVIKMT-TDDKIVLVSNYTQTLDLFERLS----KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFI 568 (755)
Q Consensus 495 ~S~Kl~~-L~~lL~~~~~~-~~~KvlIFs~~~~~ld~l~~~L----~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v 568 (755)
.|||-.. +.-++..+... .+.++||.+........+.+.+ ...++.+..+.|+.+..+....+ . ....|
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~~I 164 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A--KKPHI 164 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H--TCCSE
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c--CCCCE
Confidence 3677643 33344433322 3457999998877655554444 44588999999998765443322 2 23335
Q ss_pred EEeecCCc------ccccccCCCCEEEE
Q psy5647 569 FMLSSKAG------GCGLNLIGANRLVM 590 (755)
Q Consensus 569 ~LlSt~ag------g~GLNL~~a~~vI~ 590 (755)
++.+.... ..++++...+.||+
T Consensus 165 ~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 165 IIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 55554322 12455655655554
No 272
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=29.92 E-value=47 Score=33.65 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=24.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
|..-.-|.|||..++.++..+...+ +++|+|-
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~G-------~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQTN-------KRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTT-------CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-------CCEEEEe
Confidence 4456679999999999999888665 3467764
No 273
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=29.63 E-value=35 Score=28.70 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSM 548 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~ 548 (755)
.++++|++|..-.........|...||+.+.+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 467899999876666677788999999999999985
No 274
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=28.84 E-value=1.4e+02 Score=25.43 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC--cccccccC------C
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA--GGCGLNLI------G 584 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a--gg~GLNL~------~ 584 (755)
.+.+|+|+.........+...|...|+.+...... .+.++.+..+....++|+.... |..|+.+. .
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~------~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~ 77 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTG------EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQIS 77 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSH------HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecCh------HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCC
Q ss_pred CCEEEEeCCCCCCCcHHHHhH
Q psy5647 585 ANRLVMFDPDWNPANDDQAMA 605 (755)
Q Consensus 585 a~~vI~~D~~WNp~~~~Qa~g 605 (755)
.-.+|++....++....+++.
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~ 98 (140)
T 3h5i_A 78 ELPVVFLTAHTEPAVVEKIRS 98 (140)
T ss_dssp CCCEEEEESSSSCCCCGGGGG
T ss_pred CCCEEEEECCCCHHHHHHHHh
No 275
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=28.78 E-value=43 Score=33.70 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=26.3
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe--C-CcchHhHH
Q psy5647 177 DEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA--P-SSLVKNWC 221 (755)
Q Consensus 177 DemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~--P-~sll~nW~ 221 (755)
---|.|||..++.++..+.+.| +++|+|- | ..-+..|.
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G-------~~VlliD~D~~q~~l~~~l 52 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGG-------AKVAVIDLDLRQRTSARFF 52 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTT-------CCEEEEECCTTTCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC-------CcEEEEECCCCCCCHHHHh
Confidence 3459999999999999998765 3466654 4 33344443
No 276
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=28.74 E-value=36 Score=33.56 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=23.0
Q ss_pred cCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 177 DEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 177 DemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
---|.|||..++.++..+.+.| +++|+|-
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g-------~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLG-------KRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCC-------CCEEEEE
Confidence 4559999999999999998765 3477764
No 277
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=28.53 E-value=31 Score=35.09 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l 194 (755)
....|.+|.-+.|+|||..|-+++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999988877543
No 278
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=28.42 E-value=29 Score=34.32 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=21.9
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...|++|.-+.|+|||..|-++...+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45678999999999999998887654
No 279
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.22 E-value=45 Score=28.04 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc---CCCceEEEeecCCccccccc--CCCCEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK---TSNEFIFMLSSKAGGCGLNL--IGANRL 588 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~---~~~~~v~LlSt~agg~GLNL--~~a~~v 588 (755)
+-.+..+++..+.++.+ ....+..+.+|-.++...-.++++..+. .....++++|......-... .+|+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 44555544444444333 3455677777755543333444444443 23444555554432221111 23443
Q ss_pred EEeCCCCCCCcHHHHhHhhhccCC
Q psy5647 589 VMFDPDWNPANDDQAMARVWRDGQ 612 (755)
Q Consensus 589 I~~D~~WNp~~~~Qa~gR~~R~GQ 612 (755)
++.-|.++....+++.++++-++
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC----
T ss_pred -heeCCCCHHHHHHHHHHhhccCC
Confidence 33346677777777777766543
No 280
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=27.78 E-value=52 Score=34.01 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=25.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
++..---|.|||..+.+++..+.+.| +++|+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G-------~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR-------SSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS-------SCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC-------CeEEEEE
Confidence 45566779999999999999998765 3467764
No 281
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=27.32 E-value=1.7e+02 Score=23.81 Aligned_cols=46 Identities=7% Similarity=-0.127 Sum_probs=35.3
Q ss_pred CEEEEEEechh-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHH
Q psy5647 515 DKIVLVSNYTQ-TLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 515 ~KvlIFs~~~~-~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~F 560 (755)
.+|+||+...- --.....+|...|++|..+|=..+.+.++.+.+.-
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 47889886542 35667888999999999999888887777766554
No 282
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=27.26 E-value=3.4e+02 Score=27.78 Aligned_cols=47 Identities=23% Similarity=0.048 Sum_probs=29.7
Q ss_pred cCCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 168 ~~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..+.-.+++-+.|+|||.-+..++.........++ ...++++|.-..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg-~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY-PGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB-CCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC-CCCeEEEEECCC
Confidence 34445789999999999999988765432111000 124577777654
No 283
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=27.13 E-value=50 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=17.4
Q ss_pred cCCcCeEEE-cCCCCcHHHHHH
Q psy5647 168 EDAYGCIMA-DEMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILA-DemGlGKTlqaI 188 (755)
.+.++||+| -.+|+|||.++.
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHHT
T ss_pred CCceeEEEeeCCCCCCCceEEe
Confidence 567888887 578999999986
No 284
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=27.10 E-value=46 Score=27.03 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.6
Q ss_pred CEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 515 DKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
+++||+|+.-.........|...|+.+..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999877777788889999999778899864
No 285
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=27.00 E-value=42 Score=35.12 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.5
Q ss_pred cCCcCeEEEc-CCCCcHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQC 187 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqa 187 (755)
.+.++||+|- .+|+|||.++
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 4677888874 6899999997
No 286
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=26.79 E-value=2.2e+02 Score=29.70 Aligned_cols=108 Identities=9% Similarity=0.136 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCcEEEEcCCC------CHHHHHHHHHHHcc--CCCceEEEeecCC--ccccccc------CCCCEEEE
Q psy5647 527 LDLFERLSKLRGYKYVRLDGSM------TIKKRAKVVETFNK--TSNEFIFMLSSKA--GGCGLNL------IGANRLVM 590 (755)
Q Consensus 527 ld~l~~~L~~~g~~~~~ldG~~------~~~~R~~~v~~Fn~--~~~~~v~LlSt~a--gg~GLNL------~~a~~vI~ 590 (755)
+..+-+++...|+.-+.+-|++ +.+||.++++...+ .+...|+ +.+.+ -.+-+.+ .+|+.+..
T Consensus 82 l~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi-aGvg~~st~eai~la~~A~~~Gadavlv 160 (360)
T 4dpp_A 82 YDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVI-GNTGSNSTREAIHATEQGFAVGMHAALH 160 (360)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE-EECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEE-EecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4445555667788888888875 57899998887765 3333333 32221 1222222 27999999
Q ss_pred eCCCCCCCcHHHHhHhhhccCCCCcEEEEEEe--eCCCHHHHHHHHH
Q psy5647 591 FDPDWNPANDDQAMARVWRDGQKKPCFVYRFL--STGSIEEKMMQRQ 635 (755)
Q Consensus 591 ~D~~WNp~~~~Qa~gR~~R~GQ~k~V~Vyrlv--~~gTiEEkI~~r~ 635 (755)
.-|.|++........-.-.+-..-|+.+|..= +.-.+.-..+.+.
T Consensus 161 v~PyY~k~sq~gl~~hf~~IA~a~PiilYNiP~rTg~~ls~e~l~~L 207 (360)
T 4dpp_A 161 INPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPGRTGQDIPPRAIFKL 207 (360)
T ss_dssp ECCCSSCCCHHHHHHHHHTTGGGSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999887655443332233333589999863 3334544444444
No 287
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=26.70 E-value=3.1e+02 Score=26.11 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=52.0
Q ss_pred hhhhHHH-HHHHHHHHhc------cCCCEEEEEEechhHHHHH----HHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccC
Q psy5647 495 LSAKLMV-LDTMLAVIKM------TTDDKIVLVSNYTQTLDLF----ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT 563 (755)
Q Consensus 495 ~S~Kl~~-L~~lL~~~~~------~~~~KvlIFs~~~~~ld~l----~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~ 563 (755)
.|||... +.-++..+.. ..+.++||.+........+ ..++...++.+..+.|+.+.......+.. +
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~ 152 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER---G 152 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---C
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---C
Confidence 4677644 3344444432 2356789999887655544 44555568999999999887665444432 2
Q ss_pred CCceEEEeecCCcc-----cccccCCCCEEEE
Q psy5647 564 SNEFIFMLSSKAGG-----CGLNLIGANRLVM 590 (755)
Q Consensus 564 ~~~~v~LlSt~agg-----~GLNL~~a~~vI~ 590 (755)
..|++.+....- ..+++.....||+
T Consensus 153 --~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 153 --VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp --CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred --CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 335555543221 1234555555544
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=26.36 E-value=54 Score=35.77 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.8
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~ 196 (755)
...+.+|.-+.|+|||..+-++...+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567899999999999999988877654
No 289
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=26.34 E-value=41 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=20.9
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l 194 (755)
..|++|.-++|+|||..+-++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5678999999999999888877554
No 290
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=26.12 E-value=45 Score=35.07 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.5
Q ss_pred cCCcCeEEE-cCCCCcHHHHHH
Q psy5647 168 EDAYGCIMA-DEMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILA-DemGlGKTlqaI 188 (755)
.+.++||+| -.+|+|||.++.
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCceEEEEECCCCCCCceEec
Confidence 567888887 578999999975
No 291
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=25.73 E-value=52 Score=35.66 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.8
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTC
T ss_pred cCCceEEEEeCCCCCCCCEEeec
Confidence 5678889886 589999999863
No 292
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=25.44 E-value=1.8e+02 Score=24.54 Aligned_cols=29 Identities=7% Similarity=0.214 Sum_probs=20.5
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYV 542 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~ 542 (755)
..+|+|+.........+...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII 35 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE
Confidence 45777777777777777777777776544
No 293
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=25.28 E-value=1e+02 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.8
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
..+.++||+|..-.........|...|+.-..++|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45788999998877777788889999986678899864
No 294
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.27 E-value=74 Score=26.89 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=35.1
Q ss_pred CEEEEEEechhH-HH------HHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHH
Q psy5647 515 DKIVLVSNYTQT-LD------LFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560 (755)
Q Consensus 515 ~KvlIFs~~~~~-ld------~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~F 560 (755)
.+|+||+...-. -. .+..+|...|+.|..+|=......+.++.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 478888754322 23 57888999999999999888887888777776
No 295
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=24.63 E-value=36 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
.+.+++|..+.|+|||..|-++...+
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHH
Confidence 45689999999999999888776543
No 296
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=24.18 E-value=56 Score=34.23 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.6
Q ss_pred cCCcCeEEE-cCCCCcHHHHHH
Q psy5647 168 EDAYGCIMA-DEMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILA-DemGlGKTlqaI 188 (755)
.+.++||+| -.+|+|||.++.
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHH
T ss_pred CCcceeEEEeCCCCCCCceEeC
Confidence 577888887 468999999986
No 297
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.14 E-value=58 Score=34.83 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=17.5
Q ss_pred cCCcCeEEEc-CCCCcHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaI 188 (755)
.+.++||+|- .+|+|||.++.
T Consensus 138 ~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 138 DGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TTCCEEEEEESCTTSSHHHHHH
T ss_pred CCcceEEEEECCCCCCCceEeC
Confidence 5778888875 68999999985
No 298
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.04 E-value=1.4e+02 Score=25.36 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=15.0
Q ss_pred CEEEEEEechhHHHHHHHHHHhcCCcE
Q psy5647 515 DKIVLVSNYTQTLDLFERLSKLRGYKY 541 (755)
Q Consensus 515 ~KvlIFs~~~~~ld~l~~~L~~~g~~~ 541 (755)
.+|+|..........+...|...|+.+
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v 33 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDS 33 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeE
Confidence 455555555555555555555555543
No 299
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=23.98 E-value=74 Score=30.18 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=25.9
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe--CCcchHhHH
Q psy5647 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA--PSSLVKNWC 221 (755)
Q Consensus 176 ADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~--P~sll~nW~ 221 (755)
.---|.|||..++.++..+.+.| ++|+|- |..-+..|.
T Consensus 7 s~KGGvGKTT~a~~LA~~la~~g--------~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 7 SFKGGVGKTTTAVHLSAYLALQG--------ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp ESSTTSSHHHHHHHHHHHHHTTS--------CEEEEEECTTCHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHhcC--------CEEEEECCCCCCHHHHh
Confidence 34459999999999999887654 256653 544444454
No 300
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=23.94 E-value=1.3e+02 Score=28.16 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=27.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
.+.-.+|.-+.|+|||..+..++..+...+ .+++++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~-------~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG-------DPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT-------CCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC-------CeEEEEEccc
Confidence 444567889999999998888886665443 2356665443
No 301
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=23.54 E-value=52 Score=34.91 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=17.2
Q ss_pred cCCCCcHHHHHHHHHHHHHH
Q psy5647 177 DEMGLGKTLQCITLMWTLLR 196 (755)
Q Consensus 177 DemGlGKTlqaIall~~l~~ 196 (755)
--=|.|||..++.+++.+..
T Consensus 116 ~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 116 LKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp SSSSSSHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHh
Confidence 45589999999999998875
No 302
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=23.43 E-value=58 Score=34.03 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=17.0
Q ss_pred cCCcCeEEEc-CCCCcHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaI 188 (755)
.+.++||+|- .+|+|||.++.
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHHC
T ss_pred hhcCeeEEEecccCCCceEeec
Confidence 5678888875 68999999974
No 303
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=23.37 E-value=61 Score=33.63 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=24.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
+..---|.|||..+++++..+...| +++|+|-
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g-------~~vllid 51 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVR-------RSVLLLS 51 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSS-------SCEEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCC-------CcEEEEE
Confidence 4455669999999999998887654 3466665
No 304
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=23.25 E-value=57 Score=33.79 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=17.5
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++..
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCeEEEEEECCCCCCCceEecc
Confidence 5677888875 589999999863
No 305
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=23.07 E-value=60 Score=34.34 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.4
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++..
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCceEEEEeecCCCCCcceeccc
Confidence 4677888876 689999998763
No 306
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=23.03 E-value=43 Score=28.96 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCCEEEEEEechhH--HHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQT--LDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~--ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
.+.+|||+|..-.. .......|...|+++..++|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46789999988665 67788889999999888999853
No 307
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=22.85 E-value=54 Score=27.36 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~ 549 (755)
.+.+|||+|..-.........|...|+. +..++|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4678999999877777788889999996 778999853
No 308
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=22.69 E-value=2.6e+02 Score=26.40 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=34.0
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhc----CCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLR----GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~----g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.++||.+........+.+.++.. ++.+..+.|+.+.......+ + ...|++.+..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~iiv~Tp~ 155 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N---NINILVCTPG 155 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T---TCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C---CCCEEEECHH
Confidence 3678999999887766665555543 57888899987654433322 2 2335656643
No 309
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=22.36 E-value=51 Score=34.65 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.4
Q ss_pred cCCcCeEEEc-CCCCcHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaI 188 (755)
.+.++||+|- .+|+|||.++.
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCCEEEEEeCCCCCCccEEeC
Confidence 5678888875 68999999986
No 310
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=22.34 E-value=3.4e+02 Score=27.64 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=40.4
Q ss_pred hhhHHH-HHHHHHHHhc-cCCCEEEEEEechhHHHHHHHHHHhc-----CCcEEEEcCCCCHHHHHHHH
Q psy5647 496 SAKLMV-LDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLR-----GYKYVRLDGSMTIKKRAKVV 557 (755)
Q Consensus 496 S~Kl~~-L~~lL~~~~~-~~~~KvlIFs~~~~~ld~l~~~L~~~-----g~~~~~ldG~~~~~~R~~~v 557 (755)
+||-.. +.-++..+.. ..+.++||.+........+.+.++.. ++.+..+.|+.+..+....+
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 124 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH
Confidence 667643 2333333322 23458999999888777666655543 78899999998876655444
No 311
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=22.23 E-value=51 Score=34.52 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCcCeEEEcCCCCcHHHHHHHHHHHH
Q psy5647 169 DAYGCIMADEMGLGKTLQCITLMWTL 194 (755)
Q Consensus 169 ~~~g~ILADemGlGKTlqaIall~~l 194 (755)
...+.+|.-++|+|||..|-++...+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999988887654
No 312
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=22.19 E-value=74 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=26.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEe
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVA 212 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~ 212 (755)
.+..---|.|||..+++++..+.+.| +++|+|-
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G-------~rVLlvd 43 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG-------KRVLLVS 43 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEEE
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC-------CcEEEEE
Confidence 45556679999999999999998876 3477766
No 313
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=22.15 E-value=62 Score=28.87 Aligned_cols=37 Identities=3% Similarity=-0.001 Sum_probs=29.0
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~ 549 (755)
.+.+|||+|+.-.........|...|+. +..++|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4678999998866666778889999995 889999974
No 314
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=22.12 E-value=70 Score=33.44 Aligned_cols=34 Identities=12% Similarity=0.342 Sum_probs=25.6
Q ss_pred EEEcCCCCcHHHHHHHHHHHHH--HcCCCCCCCCCeEEEEeCC
Q psy5647 174 IMADEMGLGKTLQCITLMWTLL--RQGPLAKPLIDKAIIVAPS 214 (755)
Q Consensus 174 ILADemGlGKTlqaIall~~l~--~~~~~~~p~~~~~LIV~P~ 214 (755)
+..---|.|||..+++++..+. +.| +++|+|-.-
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~~~~G-------~rVLLvD~D 57 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMALSQPN-------KQFLLISTD 57 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTT-------SCEEEEECC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCC-------CeEEEEECC
Confidence 4445669999999999999988 555 457777644
No 315
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=21.93 E-value=60 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~ 549 (755)
.+.+|||+|+.-.........|+..|+. +..++|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4679999999876666778889999996 889999863
No 316
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=21.53 E-value=64 Score=34.02 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=17.2
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCceEEEeecCCCCCCceEEec
Confidence 5677888875 589999999753
No 317
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=21.52 E-value=56 Score=34.28 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.2
Q ss_pred cCCcCeEEE-cCCCCcHHHHHH
Q psy5647 168 EDAYGCIMA-DEMGLGKTLQCI 188 (755)
Q Consensus 168 ~~~~g~ILA-DemGlGKTlqaI 188 (755)
.+.++||+| -.+|+|||.++.
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHHT
T ss_pred CCCceEEEEeCCCCCCceeeec
Confidence 567788887 578999999986
No 318
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=21.51 E-value=53 Score=35.23 Aligned_cols=22 Identities=27% Similarity=0.179 Sum_probs=17.8
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHHHC
T ss_pred cCCceeEEeecCCCCCCCeEeec
Confidence 5677888875 689999999874
No 319
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=21.47 E-value=64 Score=34.03 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=17.5
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred cCCeeEEEEeCCCCCCCceEeeC
Confidence 5677888876 489999998863
No 320
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.34 E-value=1.8e+02 Score=26.41 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=41.3
Q ss_pred CCCEEEEEEec----hhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecCC
Q psy5647 513 TDDKIVLVSNY----TQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575 (755)
Q Consensus 513 ~~~KvlIFs~~----~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~a 575 (755)
...|+|+++-- .--+.++..+|+..|+.+..+...++.++-.+.+.+++ .. ++.+|+..
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~---~d-iV~lS~~~ 79 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED---VD-VIGVSILN 79 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT---CS-EEEEEESS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC---CC-EEEEEeec
Confidence 35688888743 34478999999999999998888888876555555443 23 55666543
No 321
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=21.28 E-value=64 Score=34.10 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.6
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred CCCeeeEEeecCCCCCCCEeEec
Confidence 5677888875 689999999863
No 322
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=21.28 E-value=42 Score=35.56 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHHHcC
Q psy5647 179 MGLGKTLQCITLMWTLLRQG 198 (755)
Q Consensus 179 mGlGKTlqaIall~~l~~~~ 198 (755)
-|.|||..+++++..+...|
T Consensus 11 GG~GKTt~a~~la~~la~~g 30 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQG 30 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHCC
Confidence 38999999999999888775
No 323
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=21.25 E-value=64 Score=33.86 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.3
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++.+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCcceEEEECCCCCCcceEeec
Confidence 5677888875 589999998863
No 324
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=21.17 E-value=82 Score=33.70 Aligned_cols=39 Identities=28% Similarity=0.456 Sum_probs=28.3
Q ss_pred CcCeEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCc
Q psy5647 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS 215 (755)
Q Consensus 170 ~~g~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~s 215 (755)
..++++.-.+|+|||...-.++..++..+ .+++|+-|..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g-------~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRG-------DRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT-------CEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCC-------CcEEEEeCCC
Confidence 45778888999999998766676666654 2367777764
No 325
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=21.08 E-value=61 Score=28.89 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=30.3
Q ss_pred CCCEEEEEEech--hHHHHHHHHHHhcCCcEEEEcCCCC
Q psy5647 513 TDDKIVLVSNYT--QTLDLFERLSKLRGYKYVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~--~~ld~l~~~L~~~g~~~~~ldG~~~ 549 (755)
.+.+|||+|..- .........|+..|+++..++|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999986 4566777889999999999999863
No 326
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.86 E-value=1.8e+02 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=7.9
Q ss_pred CCCCCcHHHHhHhhhcc
Q psy5647 594 DWNPANDDQAMARVWRD 610 (755)
Q Consensus 594 ~WNp~~~~Qa~gR~~R~ 610 (755)
|.++....+++.++.+.
T Consensus 107 P~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 107 PFTSAQLITAVSQLLNA 123 (132)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 44444444444444443
No 327
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.82 E-value=2.3e+02 Score=26.78 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=44.2
Q ss_pred CCCEEEEEEech----hHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHccCCCceEEEeecC
Q psy5647 513 TDDKIVLVSNYT----QTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSK 574 (755)
Q Consensus 513 ~~~KvlIFs~~~----~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~~~~~~v~LlSt~ 574 (755)
.+.++|+++--. --+.++..+|+..|+.+..+.-.++.++-.+.+.+.+ . .++.+|..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~--d~v~lS~~ 148 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--P--DIVGMSAL 148 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--C--SEEEEECC
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--C--CEEEEecc
Confidence 356888887543 3478999999999999999999999888777777774 2 25666654
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=20.80 E-value=3.2e+02 Score=34.85 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=31.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHHcCCCCCCCCCeEEEEeCCcch-HhH
Q psy5647 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV-KNW 220 (755)
Q Consensus 173 ~ILADemGlGKTlqaIall~~l~~~~~~~~p~~~~~LIV~P~sll-~nW 220 (755)
+.+.-.-|+|||..++.++....+.+. .+++|.+...+ ..+
T Consensus 1434 iei~g~~~sGkttl~~~~~a~~~~~g~-------~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1434 VEIYGPESSGKTTLTLQVIAAAQREGK-------TCAFIDAEHALDPIY 1475 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC-------CEEEECTTSCCCHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEecCCCCCHHH
Confidence 677888999999999999988877764 36777776444 444
No 329
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=20.69 E-value=60 Score=28.20 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=30.3
Q ss_pred CCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCC
Q psy5647 513 TDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMT 549 (755)
Q Consensus 513 ~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~ 549 (755)
.+.++||+|..-.........|...|+. +..++|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999877677778888889996 778999964
No 330
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.33 E-value=2.2e+02 Score=23.59 Aligned_cols=91 Identities=8% Similarity=-0.085 Sum_probs=45.0
Q ss_pred CCEEEEEEechhHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHcc---CCCceEEEeecCCccccccc--CCCCEE
Q psy5647 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK---TSNEFIFMLSSKAGGCGLNL--IGANRL 588 (755)
Q Consensus 514 ~~KvlIFs~~~~~ld~l~~~L~~~g~~~~~ldG~~~~~~R~~~v~~Fn~---~~~~~v~LlSt~agg~GLNL--~~a~~v 588 (755)
+-.+..+++..+.++.+ ....+..+.+|-.++...-.++++..+. .....++++|...-..-... .+|+..
T Consensus 27 ~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~ 102 (133)
T 3nhm_A 27 EFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAY 102 (133)
T ss_dssp TSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEE
T ss_pred CcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceE
Confidence 45555555444444433 3456777777766554444445555544 22444666665432211222 233332
Q ss_pred EEeCCCCCCCcHHHHhHhhhcc
Q psy5647 589 VMFDPDWNPANDDQAMARVWRD 610 (755)
Q Consensus 589 I~~D~~WNp~~~~Qa~gR~~R~ 610 (755)
+--|+++....+++.++.+.
T Consensus 103 --l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 103 --LVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp --EESSCCHHHHHHHHHHHHHH
T ss_pred --EeccCCHHHHHHHHHHHHhh
Confidence 33466777777777666543
No 331
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.11 E-value=60 Score=33.06 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=25.2
Q ss_pred ccEEEEeCCcccCC----CccHHHHHHHcc---ccccEEEeecCC
Q psy5647 284 VGLVLCDEGHRLKN----CESQTYQALMGL---KAKRRVLLSGTP 321 (755)
Q Consensus 284 ~~lvIiDEaH~lKn----~~s~~~~al~~l---~~~~rllLTGTP 321 (755)
.-+||+||+|.+.. ........+..+ ..+.++++||++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 56899999999865 223334444433 246678999986
No 332
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=20.09 E-value=48 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=30.6
Q ss_pred cCCCEEEEEEechhHHHHHHHHHHhcCCc-EEEEcCCCC
Q psy5647 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYK-YVRLDGSMT 549 (755)
Q Consensus 512 ~~~~KvlIFs~~~~~ld~l~~~L~~~g~~-~~~ldG~~~ 549 (755)
..+.++||+|..-.........|...|+. +..++|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 34678999999876677788889999996 778899853
No 333
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=20.06 E-value=60 Score=33.96 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.4
Q ss_pred cCCcCeEEEc-CCCCcHHHHHHH
Q psy5647 168 EDAYGCIMAD-EMGLGKTLQCIT 189 (755)
Q Consensus 168 ~~~~g~ILAD-emGlGKTlqaIa 189 (755)
.+.++||+|- .+|+|||.++..
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred cCCccceeeecCCCCCCCeEEec
Confidence 5677888865 789999998863
Done!