Your job contains 1 sequence.
>psy5647
RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEM
SEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQL
SAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMG
LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGG
SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCES
QTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQD
SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTN
LIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPT
GYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYK
YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND
DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE
LRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPIL
KHCWGAGVSFVFYQHSTKAEKSKVVTEEEEKEEEE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5647
(755 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 2426 6.2e-252 1
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 2397 7.3e-249 1
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 2359 7.8e-245 1
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 2351 5.5e-244 1
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 2349 8.9e-244 1
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 2346 1.8e-243 1
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 2329 1.2e-241 1
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 2328 1.5e-241 1
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 2324 4.0e-241 1
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 2179 9.2e-226 1
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 2176 1.9e-225 1
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 2170 8.3e-225 1
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 2161 7.4e-224 1
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 2149 1.4e-222 1
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 2140 1.2e-221 1
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 2134 5.4e-221 1
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 2121 1.3e-219 1
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 2081 2.2e-215 1
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 2080 2.8e-215 1
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 2012 4.6e-208 1
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 1614 1.5e-168 2
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 1564 2.1e-167 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 1524 4.1e-165 3
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 1524 4.1e-165 3
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 1433 1.2e-163 3
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 1352 1.9e-146 3
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 1254 2.6e-130 2
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 1235 1.5e-127 2
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 1223 2.7e-126 2
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 1216 1.5e-125 2
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 1210 8.1e-125 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 1204 1.9e-122 1
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 1182 3.5e-122 2
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 684 1.0e-121 2
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 684 1.0e-121 2
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 1197 1.1e-121 1
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 1150 6.7e-119 2
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 1162 5.4e-118 1
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 615 4.5e-105 2
SGD|S000000277 - symbol:RDH54 "DNA-dependent ATPase" spec... 841 4.8e-95 2
WB|WBGene00013792 - symbol:Y116A8C.13 species:6239 "Caeno... 519 1.2e-82 2
POMBASE|SPAC22F3.03c - symbol:rdh54 "ATP-dependent DNA he... 800 1.2e-79 1
UNIPROTKB|F1MQ85 - symbol:ATRX "Uncharacterized protein" ... 413 3.8e-65 3
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 659 3.9e-65 2
FB|FBgn0039338 - symbol:XNP "XNP" species:7227 "Drosophil... 427 1.2e-64 3
UNIPROTKB|P46100 - symbol:ATRX "Transcriptional regulator... 413 1.3e-64 3
UNIPROTKB|F1LM36 - symbol:F1LM36 "Uncharacterized protein... 416 1.5e-64 3
UNIPROTKB|K7GSF7 - symbol:LOC100514440 "Uncharacterized p... 413 2.2e-64 3
ZFIN|ZDB-GENE-030912-11 - symbol:atrx "alpha thalassemia/... 413 2.3e-64 4
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 655 4.4e-64 2
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 663 7.1e-64 1
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 661 1.2e-63 1
UNIPROTKB|F1PKC1 - symbol:ATRX "Uncharacterized protein" ... 412 1.5e-63 3
MGI|MGI:103067 - symbol:Atrx "alpha thalassemia/mental re... 416 2.1e-63 3
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 397 2.3e-63 2
UNIPROTKB|E1C8H5 - symbol:ATRX "Uncharacterized protein" ... 403 2.6e-63 2
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 327 2.9e-63 4
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 327 2.9e-63 4
UNIPROTKB|E1BEK4 - symbol:Bt.109773 "Uncharacterized prot... 331 4.3e-63 4
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 329 5.7e-63 4
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 653 8.6e-63 1
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 329 1.2e-62 4
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 329 1.2e-62 4
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 326 2.0e-62 4
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 349 5.5e-62 3
UNIPROTKB|E1C963 - symbol:RAD54L2 "Uncharacterized protei... 324 6.8e-62 4
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 376 1.6e-61 3
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 324 5.4e-61 4
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 635 6.0e-61 1
UNIPROTKB|F1RPI9 - symbol:LOC100514440 "Uncharacterized p... 366 8.6e-61 2
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 340 1.0e-60 3
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 373 9.5e-60 3
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 333 3.7e-59 3
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 363 2.2e-58 2
UNIPROTKB|G4N791 - symbol:MGG_06447 "SNF2 family ATP-depe... 582 3.7e-58 3
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 369 3.7e-58 2
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 370 1.0e-57 2
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 321 2.2e-57 3
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 366 2.3e-57 2
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 366 2.8e-57 2
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 370 4.2e-57 2
FB|FBgn0034976 - symbol:CG4049 species:7227 "Drosophila m... 317 4.9e-57 4
WB|WBGene00007761 - symbol:rad-26 species:6239 "Caenorhab... 278 5.3e-56 3
UNIPROTKB|E7EU19 - symbol:RAD54L2 "Helicase ARIP4" specie... 329 8.9e-56 4
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 351 9.0e-56 3
WB|WBGene00006961 - symbol:xnp-1 species:6239 "Caenorhabd... 288 1.4e-55 4
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 566 6.2e-55 2
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 338 6.4e-55 2
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 337 2.0e-54 2
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 325 5.5e-54 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 338 5.7e-54 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 338 5.7e-54 2
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 325 7.1e-54 2
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 331 2.4e-53 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 322 3.0e-53 2
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 323 3.7e-53 2
UNIPROTKB|G5E5P9 - symbol:LOC789977 "Uncharacterized prot... 323 7.5e-53 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 359 1.3e-52 3
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 326 2.1e-52 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 321 2.2e-52 2
WARNING: Descriptions of 470 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 2426 (859.1 bits), Expect = 6.2e-252, P = 6.2e-252
Identities = 474/739 (64%), Positives = 579/739 (78%)
Query: 1 RRSLAPSQLSKRSP-EDSPGIKTFPPPVKKE-KRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
RRSLAPSQ++KR DS + + P ++ + KR C K + P + P+ +
Sbjct: 2 RRSLAPSQVAKRKQGPDSDDEEDWEPDMEPQSKRDCRE-KYISPYRKPLTPLTNRPVCAD 60
Query: 59 EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPP 118
+EHE IR+IL+KPFK+PI NYTG +ALG+RR G RKALHDP ALVLY PP
Sbjct: 61 G-NEHEAFIRKILSKPFKIPIPNYTGV-LGLRALGLRRAGVRKALHDPFEDGALVLYEPP 118
Query: 119 QLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADE 178
+SAHDL+K DK+K+ VHVVVDPVLS +LRPHQREGVKF+++CVTG RIE++YGCIMADE
Sbjct: 119 AISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADE 178
Query: 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
MGLGKTLQCITL+WTLL+Q P KP IDK I+V+PSSLV+NW NE+ KWLGGRV + ID
Sbjct: 179 MGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAID 238
Query: 239 GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298
GGSK EID+KL +F+ G R PIL+ISYETFR HA VLHK +VGLV+CDEGHRLKN
Sbjct: 239 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNS 298
Query: 299 ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRG 358
++QTY AL + A+RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF+K++E PIL+G
Sbjct: 299 DNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKG 358
Query: 359 QDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+D+ ASD +R ++L++LI IVNRCLIRRTS +LSKYLPVK EQVVC +T LQKELY
Sbjct: 359 RDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELY 418
Query: 419 TNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNIL 478
+K +++ G K+ +++LSSITSLKKLCNHP L+ +K TG +GF+ A+++
Sbjct: 419 KLFLKQAKPVESLQTG---KISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLF 475
Query: 479 PTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538
P Y S K+ + +LS K++VLD +LA+ + TT DK+VLVSNYTQTLDLFE+L + R
Sbjct: 476 PQNY--STKAVEP--QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 531
Query: 539 YKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
Y YVRLDG+M+IKKRAK+VE FN S+ EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP
Sbjct: 532 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 591
Query: 598 ANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS 657
AND+QAMARVWRDGQKK C++YR LSTG+IEEK++QRQAHKKALSSCVVD E+DV RHFS
Sbjct: 592 ANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFS 651
Query: 658 MSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVD 717
+ ELR LF L E T+SDTHD+ +C RCVNG QV+PPP +SDCT DLS WHH +KR L D
Sbjct: 652 LGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDDSDCTCDLSNWHHCADKRGLRD 711
Query: 718 PILKHCWGAGVSFVFYQHS 736
P+L+ W A VSFVF+Q S
Sbjct: 712 PVLQASWDAAVSFVFHQRS 730
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 2397 (848.8 bits), Expect = 7.3e-249, P = 7.3e-249
Identities = 481/746 (64%), Positives = 568/746 (76%)
Query: 1 RRSLAPSQLSKRSP--EDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
RRSLAPSQL+KR E+ G + PP +K +++ + + S D P K P+T+
Sbjct: 2 RRSLAPSQLAKRKAGGEEEDG-EWRPPATQKRQKAGSEAE---SADCYRSPFRK-PLTQL 56
Query: 59 -------EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNA 111
+ S+HE IR IL+KPFKVPI NY G +ALG++R G R LHDP A
Sbjct: 57 TNRPLCLDSSQHEAFIRSILSKPFKVPIPNYKGPT-GLRALGIKRAGLRSPLHDPFEEGA 115
Query: 112 LVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAY 171
LVLY PP LSAH+ LKIDKDK+ VHVVVDPVLS +LRPHQREGVKF+++CVT RI ++
Sbjct: 116 LVLYEPPLLSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSH 175
Query: 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGR 231
GCIMADEMGLGKTLQCITLMWTLLRQ P KP I+KA++V+PSSLV+NW NE+ KWLGGR
Sbjct: 176 GCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGR 235
Query: 232 VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
+ L IDGGSK EID KL FM G R +PIL+ISYETFR HA L K VGLV+CDE
Sbjct: 236 IQPLAIDGGSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDE 295
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
GHRLKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF++ +
Sbjct: 296 GHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHF 355
Query: 352 ETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT 411
E PIL+G+D+ AS+AER K ERL++LI IVNRCLIRRTS +LSKYLPVK EQVVC ++T
Sbjct: 356 ELPILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLT 415
Query: 412 DLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGF 471
LQ ELY N +K +K G K+ +++LSSITSLKKLCNHP L+ DK +GF
Sbjct: 416 PLQAELYKNFLKQAKPVEELKEG---KINVSSLSSITSLKKLCNHPALIYDKCVEEEEGF 472
Query: 472 ENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
A+++ P GY S KS + +LS K++VLD +LAV K T++DK+VLVSNYTQTLDLFE
Sbjct: 473 MGALDLFPAGY--STKSVEP--QLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFE 528
Query: 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVM 590
+L + R Y YVRLDG+M+IKKRAKVVE FN S+ EFIFMLSSKAGGCGLNLIGANRLVM
Sbjct: 529 KLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVM 588
Query: 591 FDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE 650
FDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IEEK+ QRQ HKKALSSCVVD E+
Sbjct: 589 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQ 648
Query: 651 DVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVT 710
DV RHFS+ EL+ LF L E TISDTHDKIKC RCVNG QV+PPP SDCT DLS W+H
Sbjct: 649 DVERHFSLGELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSDCTSDLSQWNHCA 708
Query: 711 EKRWLVDPILKHCWGAGVSFVFYQHS 736
+KR L D +LK W A V+F F+ HS
Sbjct: 709 DKRGLQDSVLKAAWDAAVTFTFHHHS 734
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 2359 (835.5 bits), Expect = 7.8e-245, P = 7.8e-245
Identities = 473/738 (64%), Positives = 560/738 (75%)
Query: 9 LSKRSP--EDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE-------E 59
L+KR E+ G + PP +K +++ + + S D P K P+T+ +
Sbjct: 1 LAKRKAGGEEEDG-EWRPPATQKRQKAGSEAE---SADCYRSPFRK-PLTQLTNRPLCLD 55
Query: 60 MSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQ 119
S+HE IR IL+KPFKVPI NY G +ALG++R G R LHDP ALVLY PP
Sbjct: 56 SSQHEAFIRSILSKPFKVPIPNYKGPT-GLRALGIKRAGLRSPLHDPFEEGALVLYEPPL 114
Query: 120 LSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEM 179
LSAH+ LKIDKDK+ VHVVVDPVLS +LRPHQREGVKF+++CVT RI ++GCIMADEM
Sbjct: 115 LSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEM 174
Query: 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG 239
GLGKTLQCITLMWTLLRQ P KP I+KA++V+PSSLV+NW NE+ KWLGGR+ L IDG
Sbjct: 175 GLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDG 234
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
GSK EID KL FM G R +PIL+ISYETFR HA L K VGLV+CDEGHRLKN E
Sbjct: 235 GSKEEIDRKLVGFMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSE 294
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF++ +E PIL+G+
Sbjct: 295 NQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGR 354
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ AS+AER K ERL++LI IVNRCLIRRTS +LSKYLPVK EQVVC ++T LQ ELY
Sbjct: 355 DADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYK 414
Query: 420 NLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILP 479
N +K +K G K+ +++LSSITSLKKLCNHP L+ DK +GF A+++ P
Sbjct: 415 NFLKQAKPVEELKEG---KINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLFP 471
Query: 480 TGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGY 539
GY S KS + +LS K++VLD +LAV K T++DK+VLVSNYTQTLDLFE+L + R Y
Sbjct: 472 AGY--STKSVEP--QLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRY 527
Query: 540 KYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
YVRLDG+M+IKKRAKVVE FN S+ EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA
Sbjct: 528 LYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 587
Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
ND+QAMARVWRDGQKK C++YR LSTG+IEEK+ QRQ HKKALSSCVVD E+DV RHFS+
Sbjct: 588 NDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSL 647
Query: 659 SELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDP 718
EL+ LF L E TISDTHDKIKC RCVNG QV+PPP SDCT DLS W+H +KR L D
Sbjct: 648 GELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSDCTSDLSQWNHCADKRGLQDS 707
Query: 719 ILKHCWGAGVSFVFYQHS 736
+LK W A V+F F+ HS
Sbjct: 708 VLKAAWDAAVTFTFHHHS 725
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 2351 (832.7 bits), Expect = 5.5e-244, P = 5.5e-244
Identities = 472/738 (63%), Positives = 559/738 (75%)
Query: 9 LSKRSP--EDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE-------E 59
L+KR E+ G + PP +K +++ + + S D P K P+T+ +
Sbjct: 1 LAKRKAGGEEEDG-EWRPPATQKRQKAGSEAE---SADCYRSPFRK-PLTQLTNRPLCLD 55
Query: 60 MSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQ 119
S+HE IR IL+KPFKVPI NY G +ALG++R G R LHDP ALVLY PP
Sbjct: 56 SSQHEAFIRSILSKPFKVPIPNYKGPT-GLRALGIKRAGLRSPLHDPFEEGALVLYEPPL 114
Query: 120 LSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEM 179
LSAH+ LKIDKDK+ VHVVVDPVLS +LRPHQREGVKF+++CVT RI ++GCIMADEM
Sbjct: 115 LSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEM 174
Query: 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG 239
GLGKTLQCITLMWTLLRQ P KP I+KA++V+PSSLV+NW NE+ KWLGGR+ L IDG
Sbjct: 175 GLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKWLGGRIQPLAIDG 234
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
GSK EID KL M G R +PIL+ISYETFR HA L K VGLV+CDEGHRLKN E
Sbjct: 235 GSKEEIDRKLVGSMNQRGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSE 294
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF++ +E PIL+G+
Sbjct: 295 NQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGR 354
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ AS+AER K ERL++LI IVNRCLIRRTS +LSKYLPVK EQVVC ++T LQ ELY
Sbjct: 355 DADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYK 414
Query: 420 NLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILP 479
N +K +K G K+ +++LSSITSLKKLCNHP L+ DK +GF A+++ P
Sbjct: 415 NFLKQAKPVEELKEG---KINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDLFP 471
Query: 480 TGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGY 539
GY S KS + +LS K++VLD +LAV K T++DK+VLVSNYTQTLDLFE+L + R Y
Sbjct: 472 AGY--STKSVEP--QLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRY 527
Query: 540 KYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
YVRLDG+M+IKKRAKVVE FN S+ EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA
Sbjct: 528 LYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 587
Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
ND+QAMARVWRDGQKK C++YR LSTG+IEEK+ QRQ HKKALSSCVVD E+DV RHFS+
Sbjct: 588 NDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSL 647
Query: 659 SELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDP 718
EL+ LF L E TISDTHDKIKC RCVNG QV+PPP SDCT DLS W+H +KR L D
Sbjct: 648 GELKELFSLNETTISDTHDKIKCRRCVNGHQVRPPPEGSDCTSDLSQWNHCADKRGLQDS 707
Query: 719 ILKHCWGAGVSFVFYQHS 736
+LK W A V+F F+ HS
Sbjct: 708 VLKAAWDAAVTFTFHHHS 725
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 2349 (831.9 bits), Expect = 8.9e-244, P = 8.9e-244
Identities = 465/747 (62%), Positives = 561/747 (75%)
Query: 1 RRSLAPSQLSKRSPEDSPGI-KTFPPPV---KKEKRS-CTSRKPLGSVDNEDEPNSKLPM 55
RRSLAPSQL+KR PED P + + P KK K+S C ++ + +P ++L
Sbjct: 2 RRSLAPSQLAKRKPEDGPSDDEDWQPGAVTSKKPKKSSCETQSQECFLSPFRKPLTQLTN 61
Query: 56 TKE--EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALV 113
+ S+HE IR IL+KPFK+PI NY G ++ALG++R G R+ALHDP ALV
Sbjct: 62 RPPCLDSSQHEAFIRSILSKPFKIPIPNYQGP-LGSRALGLKRAGVRRALHDPLEEGALV 120
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGC 173
LY PP LSAHD LK DK+K+ VHVVVDP+LS +LRPHQREGVKF++ECVT RI ++GC
Sbjct: 121 LYEPPPLSAHDQLKFDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGC 180
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
IMADEMGLGKTLQCITLMWTLLRQ P KP IDKA++V+PSSLV+NW NE+ KWLGGR+
Sbjct: 181 IMADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKWLGGRIQ 240
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
L IDGGSK EID KL FM G R +PIL+ISYETFR H VL K VGLV+CDEGH
Sbjct: 241 PLAIDGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGH 300
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTAQEF+K +E
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFEL 360
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
PIL+G+D+ AS+ +R ERL +L IVNRCLIRRTS +LSKYLPVK EQVVC ++T L
Sbjct: 361 PILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 420
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
Q ELY ++ ++ G K+ +++LSSITSLKKLCNHP L+ DK DGFE
Sbjct: 421 QIELYKRFLRQAKPAEELREG---KMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEG 477
Query: 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533
++I P GY S L +LS K++VLD +LAV + + DK+VLVSNYTQTLDLFE+L
Sbjct: 478 TLDIFPPGY----NSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 533
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFD 592
+ R Y YVRLDG+M+IKKRAKVVE FN S+ +F+FMLSSKAGGCGLNLIGANRLVMFD
Sbjct: 534 CRARRYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMFD 593
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
PDWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALSSCVVD E+DV
Sbjct: 594 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDV 653
Query: 653 ARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEK 712
RHFS+ EL+ LF L+E +SDTHD+++C RCVN QV PPP SDCT DL+ W+H T+K
Sbjct: 654 ERHFSLGELKELFTLDEAKLSDTHDRLRCRRCVNNHQVWPPPDGSDCTSDLAQWNHSTDK 713
Query: 713 RWLVDPILKHCWGAG---VSFVFYQHS 736
R L D +L+ W A ++FVF+Q S
Sbjct: 714 RGLKDEVLQAAWDAASTAITFVFHQRS 740
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 2346 (830.9 bits), Expect = 1.8e-243, P = 1.8e-243
Identities = 464/746 (62%), Positives = 563/746 (75%)
Query: 1 RRSLAPSQLSKRSPED-SPGIKTFPP-PVKKEKRSCTSRKPLGS--VDNEDEPNSKLPMT 56
RRSLAPSQL++R PED S + + P V +KR +S + + +P ++L
Sbjct: 2 RRSLAPSQLARRKPEDRSSDDEDWQPGTVTPKKRKSSSETQVQECFLSPFRKPLTQLLNR 61
Query: 57 KE--EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVL 114
+ S+HE IR IL+KPFKVPI NY G ++ALG++R G R+ALHDP ALVL
Sbjct: 62 PPCLDSSQHEAFIRSILSKPFKVPIPNYQGP-LGSRALGLKRAGVRRALHDPLEEGALVL 120
Query: 115 YTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCI 174
Y PP LSAHD LK+DK+K+ VHVVVDP+LS +LRPHQREGVKF++ECVT RI ++GCI
Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180
Query: 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAA 234
MADEMGLGKTLQCITLMWTLLRQ P KP I+KA++V+PSSLVKNW NE+ KWLGGR+
Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKWLGGRIQP 240
Query: 235 LPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR 294
L IDGGSK EID KL FM G R +PIL+ISYETFR H VL K VGLV+CDEGHR
Sbjct: 241 LAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNVGLVICDEGHR 300
Query: 295 LKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETP 354
LKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTA EF+K +E P
Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360
Query: 355 ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414
IL+ +D+ AS+A+R + ERL +LIGIVNRCLIRRTS +LSKYLPVK EQVVC ++T LQ
Sbjct: 361 ILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420
Query: 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENA 474
ELY ++ ++ G K+ +++LSSITSLKKLCNHP L+ DK DGFE
Sbjct: 421 TELYKRFLRQAKPEEELREG---KMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEGT 477
Query: 475 MNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534
+ I P GY S + +LS K++VLD +LAV + + DK+VLVSNYTQTLDLFE+L
Sbjct: 478 LGIFPPGY----NSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLC 533
Query: 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
++R Y YVRLDG+M+IKKRAKVVE FN S+ +F+FMLSSKAGGCGLNLIGANRLVMFDP
Sbjct: 534 RVRRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDP 593
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
DWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALSSCVVD E+DV
Sbjct: 594 DWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVE 653
Query: 654 RHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKR 713
RHFS+ EL+ LF L+E ++SDTHD++ C RCVN QV PPP SDCT DL+ W+H T+KR
Sbjct: 654 RHFSLGELKELFTLDEASLSDTHDRLHCRRCVNNRQVWPPPDGSDCTSDLAQWNHSTDKR 713
Query: 714 WLVDPILKHCWGAG---VSFVFYQHS 736
L D +L+ W A ++FVF+Q S
Sbjct: 714 GLQDEVLQAAWDASSTAITFVFHQRS 739
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 2329 (824.9 bits), Expect = 1.2e-241, P = 1.2e-241
Identities = 462/747 (61%), Positives = 560/747 (74%)
Query: 1 RRSLAPSQLSKRSPEDSPGI-KTFPPPV---KKEKRSCTSRKPLGSVDNEDEPNSKLPMT 56
R+SLAPSQL+KR PE P + + P KK K S ++ + +P ++L
Sbjct: 2 RKSLAPSQLAKRKPEGRPSDDEDWQPGTVTPKKRKSSSGTQSQECFLSPFRKPLTQLTNR 61
Query: 57 KEEM--SEHENLIRQILAKPFKVPILNYTGG-GYSTKALGVRREGARKALHDPTAPNALV 113
+ S+HE IR IL+KPFK+PI NY G G+ +ALG++R G R+ALHDP ALV
Sbjct: 62 PPSLDSSQHEAFIRSILSKPFKIPIPNYQGPLGF--RALGLKRAGVRRALHDPLEEGALV 119
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGC 173
LY PP LSAHD +K+DK+K+ VHVVVDP+LS +LRPHQREGVKF++ECVT RI ++GC
Sbjct: 120 LYEPPPLSAHDQMKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGC 179
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
IMADEMGLGKTLQCITL+WTLLRQ P KP IDKA++V+PSSLVKNW NE+ KWLGGR+
Sbjct: 180 IMADEMGLGKTLQCITLIWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQ 239
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
L IDGGSK EID KL FM G R +PIL+ISYETFR H VL K VGLV+CDEGH
Sbjct: 240 PLAIDGGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHVGVLQKGSVGLVICDEGH 299
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTA EF+K +E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
PIL+G+D+ AS+A+R ERL +L IVNRCLIRRTS +LSKYLPVK EQVVC ++T L
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPL 419
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
Q ELY +K ++ G K+ +++LSSIT LKKLCNHP L+ DK DGFE
Sbjct: 420 QTELYKRFLKQAKPAEELREG---KMTVSSLSSITLLKKLCNHPALIYDKCVEEEDGFEG 476
Query: 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533
A+ I P Y+A L +LS K++VLD +LAV + + DK+VLVSNYTQTLDLFE+L
Sbjct: 477 ALEIFPPTYSAK----ALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFD 592
+ R Y YVRLDG+M+IKKRAKVVE FN S +F+FMLSSKAGGCGLNLIGANRLVMFD
Sbjct: 533 CRARRYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLVMFD 592
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
PDWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALSSCVVD E+DV
Sbjct: 593 PDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDV 652
Query: 653 ARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEK 712
RHFS+ EL+ LF L+E ++SDTHD+++C RCVN QV+PPP SDCT DL+ W+H T+K
Sbjct: 653 ERHFSLGELKELFTLDEASLSDTHDRLRCRRCVNNHQVRPPPDGSDCTSDLAQWNHNTDK 712
Query: 713 RWLVDPILKHCWGAG---VSFVFYQHS 736
R L D +L+ W A ++FVF+Q S
Sbjct: 713 RGLKDEVLQAAWDAASTAITFVFHQRS 739
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 2328 (824.6 bits), Expect = 1.5e-241, P = 1.5e-241
Identities = 463/746 (62%), Positives = 560/746 (75%)
Query: 1 RRSLAPSQLSKRSPED-SPGIKTFPPP-VKKEKRSCTSRKPLGS--VDNEDEPNSKLPMT 56
RRSLAPSQL+KR PE S + + P V KR +S + + +P S+L
Sbjct: 2 RRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTNQ 61
Query: 57 KE--EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVL 114
+ S+HE IR IL+KPFKVPI NY G ++ALG++R G R+ALHDP +ALVL
Sbjct: 62 PPCLDSSQHEAFIRSILSKPFKVPIPNYQGP-LGSRALGLKRAGVRRALHDPLEKDALVL 120
Query: 115 YTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCI 174
Y PP LSAHD LK+DK+K+ VHVVVDP+LS +LRPHQREGVKF++ECVT RI ++GCI
Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCI 180
Query: 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAA 234
MADEMGLGKTLQCITLMWTLLRQ P KP IDKA++V+PSSLVKNW NE+ KWLGGR+
Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240
Query: 235 LPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR 294
L IDGGSK EID KL FM G R +PIL+ISYETFR H VL K VGLV+CDEGHR
Sbjct: 241 LAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300
Query: 295 LKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETP 354
LKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN GILGTA EF+K +E P
Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELP 360
Query: 355 ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414
IL+G+D+ AS+A+R ERL +L IVNRCLIRRTS +LSKYLPVK EQVVC ++T LQ
Sbjct: 361 ILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420
Query: 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENA 474
ELY ++ + G K+ +++LSSITSLKKLCNHP L+ DK DGF A
Sbjct: 421 TELYKRFLRQAKPAEELLEG---KMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGA 477
Query: 475 MNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534
+++ P GY+ S L +LS K++VLD +LAV + + DK+VLVSNYTQTLDLFE+L
Sbjct: 478 LDLFPPGYS----SKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLC 533
Query: 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+ R Y YVRLDG+M+IKKRAKVVE FN S+ +F+FMLSSKAGGCGLNLIGANRLVMFDP
Sbjct: 534 RARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDP 593
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
DWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALSSCVVD E+DV
Sbjct: 594 DWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVE 653
Query: 654 RHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKR 713
RHFS+ EL+ LF L+E ++SDTHD++ C RCVN Q++PPP SDCT DL+ W+H T+K
Sbjct: 654 RHFSLGELKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCTSDLAGWNHCTDKW 713
Query: 714 WLVDPILKHCWGAG---VSFVFYQHS 736
L D +L+ W A ++FVF+Q S
Sbjct: 714 GLRDEVLQAAWDAASTAITFVFHQRS 739
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 2324 (823.1 bits), Expect = 4.0e-241, P = 4.0e-241
Identities = 458/746 (61%), Positives = 555/746 (74%)
Query: 1 RRSLAPSQLSKRSPEDSP--GIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
RRSLAPSQL+KR PE P G P +KR ++ + +T +
Sbjct: 2 RRSLAPSQLAKRKPEVRPSDGEDWQPGAATPKKRKASNETQSQECFLSPFRKPLIQLTNQ 61
Query: 59 ----EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVL 114
+ S+HE IR IL+KPFK+PI NY G ++ALG++R G R+ALHDP ALVL
Sbjct: 62 PPCLDSSQHEAFIRSILSKPFKIPIPNYQGP-LGSRALGLKRAGVRRALHDPLEEGALVL 120
Query: 115 YTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCI 174
Y PP LSAHD LK+DK+K+ VHVVVDPVLS +LRPHQREGV+F++ECVT RI ++GCI
Sbjct: 121 YEPPPLSAHDQLKLDKEKLPVHVVVDPVLSKVLRPHQREGVRFLWECVTSRRIPGSHGCI 180
Query: 175 MADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAA 234
MADEMGLGKTLQCITLMWTLLRQ P KP IDKA++V+PSSLVKNW NE+ KWLGGR+
Sbjct: 181 MADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQP 240
Query: 235 LPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR 294
L ID GSK EID KL FM G R +PIL+ISYETFR H VL K VGLV+CDEGHR
Sbjct: 241 LAIDAGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHR 300
Query: 295 LKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETP 354
LKN E+QTYQAL L RRVL+SGTPIQNDLLEYFSLVHFVN G+LGTA EF+K++E P
Sbjct: 301 LKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFELP 360
Query: 355 ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414
IL+G+D+ AS+ +R ERL +L IVNRCLIRRTS +LSKYLPVK EQVVC ++T LQ
Sbjct: 361 ILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 420
Query: 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENA 474
ELY ++ ++ G K+ +++LSSITSLKKLCNHP L+ DK DGF A
Sbjct: 421 TELYKRFLRQAKPAEELREG---KMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFAGA 477
Query: 475 MNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534
++ P GY+ S L +LS K++VLD +LAV + + DK+VLVSNYTQTLDLFE+L
Sbjct: 478 LDFFPPGYS----SKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLC 533
Query: 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+ R Y YVRLDG+M+IKKRAKVVE FN S+ +F+FMLSSKAGGCGLNLIGANRLVMFDP
Sbjct: 534 RARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDP 593
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
DWNPAND+QAMARVWRDGQKK C++YR LS G+IEEK+ QRQ+HKKALSSCVVD E+DV
Sbjct: 594 DWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVE 653
Query: 654 RHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKR 713
RHFS+ EL+ LF L+E ++SDTHD+++C RCVN QV PPP SDCT DL+ W+H T+KR
Sbjct: 654 RHFSLGELKELFTLDEASLSDTHDRLRCRRCVNNQQVWPPPDGSDCTSDLAQWNHSTDKR 713
Query: 714 WLVDPILKHCWGAG---VSFVFYQHS 736
L D +L+ W A ++FVF+Q S
Sbjct: 714 GLADEVLQAAWHAASTAITFVFHQRS 739
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 2179 (772.1 bits), Expect = 9.2e-226, P = 9.2e-226
Identities = 431/747 (57%), Positives = 544/747 (72%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPV--KKEKRSCTSRKPLGSVDN--EDEPNSK---- 52
RRSLAPSQ + P + F PP+ KK KR+C + D NS
Sbjct: 2 RRSLAPSQ--RLGVRLQPN-QEFTPPLLQKKNKRTCQQEQEQLQCQFALRDATNSNGSIP 58
Query: 53 LPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNAL 112
LP+ SE+E I ++LA+ FKVPI NY + LGVRR R+ALHDP A NAL
Sbjct: 59 LPIRFTANSEYELAIAKVLARKFKVPIANYVPDYGGNRCLGVRRSIVRRALHDPQACNAL 118
Query: 113 VLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYG 172
VLYTPP S H+ +K+D KI VHVVVDP+LSNILRPHQREGV+FMY+CV G + + G
Sbjct: 119 VLYTPPVYSEHERMKMDPTKILVHVVVDPLLSNILRPHQREGVRFMYDCVEGKK-GNFNG 177
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CIMADEMGLGKTLQC+TL+WTLLRQ KP I KAIIV+PSSLVKNW E TKWL GR+
Sbjct: 178 CIMADEMGLGKTLQCVTLVWTLLRQSCECKPTITKAIIVSPSSLVKNWEKEFTKWLHGRM 237
Query: 233 AALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEG 292
L ++GGSK + L F R P+L+ISYETFR +A++L +NEVG+V+CDEG
Sbjct: 238 HCLAMEGGSKEDTIKALEQFSMNTSTRLGTPVLLISYETFRIYANILCQNEVGMVICDEG 297
Query: 293 HRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE 352
HRLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +F++ +E
Sbjct: 298 HRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFE 357
Query: 353 TPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTD 412
PIL+GQ++ +SD ER +A E+ ++LIG+VN+C+IRRT+ +L+KYLPVK E V+C+++T
Sbjct: 358 NPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLTS 417
Query: 413 LQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFE 472
+Q E YTN +KSD VRR++ N K +TAL+ IT+LKKLC+HPDL+ +K+ GFE
Sbjct: 418 VQLEFYTNFLKSDKVRRSLADC-NEKASLTALADITTLKKLCSHPDLIYEKMLARDKGFE 476
Query: 473 NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER 532
N+ NILPT +YK L ELS K M+LD MLA I+ +DDK+VL+SNYTQTLDLFE+
Sbjct: 477 NSQNILPT----NYKPKDLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDLFEQ 532
Query: 533 LSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMF 591
L++ R Y +VRLDG+MTIKKR+KVV+ FN N+ F+FMLSSKAGGCGLNLIGANRL MF
Sbjct: 533 LARKRKYTFVRLDGTMTIKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNLIGANRLFMF 592
Query: 592 DPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEED 651
DPDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D E
Sbjct: 593 DPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNES 652
Query: 652 VARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTE 711
+HF+ +L+ LF + +SDTH+K+KC RC+ +Q KPPP ++DCT LS W H +
Sbjct: 653 AEKHFTRDDLKDLFSFDSKILSDTHEKLKCKRCLQNVQTKPPPEDTDCTSHLSQWFHCSN 712
Query: 712 KRWLVDPILKHCWGAG--VSFVFYQHS 736
R L D IL W A VSFVF+ S
Sbjct: 713 NRGLPDDILAQAWTASKCVSFVFHHRS 739
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 2176 (771.0 bits), Expect = 1.9e-225, P = 1.9e-225
Identities = 430/744 (57%), Positives = 539/744 (72%)
Query: 1 RRSLAPSQ-LSKRSPEDSPGIKTFPPPV-KKEKRSCTS--RKPLGSV-DNEDEPNSKLPM 55
RRSLAPSQ L R F PP+ KK KR C +K ++ D + LP+
Sbjct: 2 RRSLAPSQRLGVRIKSKD----AFTPPLQKKNKRVCQEELQKRQSALRDATNRVELPLPI 57
Query: 56 TKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLY 115
SE+E I ++LA+ FKVPI NY + LGVRR R+ALHDP A NALVLY
Sbjct: 58 RFTANSEYEQAIAKVLARKFKVPIANYVPDYGGNRTLGVRRTIVRRALHDPQACNALVLY 117
Query: 116 TPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIM 175
PP + H+ + +D K+QVHVVVDP+LSN+LRPHQREGV+FMYECV G R + GCIM
Sbjct: 118 VPPAYTEHERMSMDPSKVQVHVVVDPILSNVLRPHQREGVRFMYECVEGKR-GNFNGCIM 176
Query: 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAAL 235
ADEMGLGKTLQC+TL WTLLRQ P KP I KAIIV+PSSLVKNW E TKWL GR+ L
Sbjct: 177 ADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCL 236
Query: 236 PIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL 295
++GGSK + L F R P+L+ISYETFR +A +L K EVG+V+CDEGHRL
Sbjct: 237 AMEGGSKEDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRL 296
Query: 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355
KN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +F++ +E I
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSI 356
Query: 356 LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQK 415
LRGQ++ ++DAER +A ++ ++LIG+VN+C+IRRT+ +L+KYLPVK E VVC+K+T +Q
Sbjct: 357 LRGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQL 416
Query: 416 ELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAM 475
++YTN +KSD VRR++ N K +TAL+ IT+LKKLCNHPDL+ +KI GFEN+
Sbjct: 417 QIYTNFLKSDQVRRSLADC-NEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQ 475
Query: 476 NILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535
N+LP +YK + ELS K M+LD MLA I+ +DDK+VL+SNYTQTLDLFE+L++
Sbjct: 476 NVLPP----NYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLAR 531
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPD 594
R Y YVRLDG+MTIKKR+KVV+ FN S + F+FMLSSKAGGCGLNLIGANRL MFDPD
Sbjct: 532 KRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPD 591
Query: 595 WNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
WNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D E +
Sbjct: 592 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESSEK 651
Query: 655 HFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRW 714
HF+ +L+ LF E N +SDTH+K+KC RC +Q +PP +DCT LS W H + R
Sbjct: 652 HFTRDDLKDLFSFEANVLSDTHNKLKCKRCFQDVQRQPPAENTDCTSHLSQWFHCSNNRG 711
Query: 715 LVDPILKHCWGAG--VSFVFYQHS 736
L D IL W A VSFVF+ S
Sbjct: 712 LPDSILSQAWTASKCVSFVFHHRS 735
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 427/744 (57%), Positives = 537/744 (72%)
Query: 1 RRSLAPSQ-LSKRSPEDSPGIKTFPPPV-KKEKRSCTSRKPLGSVDNEDEPNS---KLPM 55
RRSLAPSQ L R F PP+ KK KR C D N+ LP+
Sbjct: 2 RRSLAPSQRLGVRIKSKD----AFTPPLQKKNKRVCQIELQKRQSALRDATNTVELPLPI 57
Query: 56 TKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLY 115
S++E I ++LA+ FKVPI NY + LGVRR R+ALHDP A NALVLY
Sbjct: 58 RFTANSDYEQAIAKVLARKFKVPIANYVPDYGGNRTLGVRRSIVRRALHDPQACNALVLY 117
Query: 116 TPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIM 175
TPP + H+ + +D K+QVHVVVDP+LSN+LRPHQREGV+FMYECV G R + GCIM
Sbjct: 118 TPPAYTEHERMSLDPSKLQVHVVVDPILSNVLRPHQREGVRFMYECVEGKR-GNFNGCIM 176
Query: 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAAL 235
ADEMGLGKTLQC+TL WTLLRQ P KP I KAI+V+PSSLVKNW E TKWL GR+ L
Sbjct: 177 ADEMGLGKTLQCVTLTWTLLRQSPDCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCL 236
Query: 236 PIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL 295
++GGSK + L F R P+L+ISYETFR ++ +L K EVG+V+CDEGHRL
Sbjct: 237 AMEGGSKEDTTRTLEQFAMNTATRCGTPVLLISYETFRLYSHILCKTEVGMVICDEGHRL 296
Query: 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355
KN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGT +F++ +E I
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAI 356
Query: 356 LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQK 415
LRGQ++ ++DAER +A E+ ++L+G+VN+C+IRRT+ +L+KYLPVK E VVC K+T +Q
Sbjct: 357 LRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQL 416
Query: 416 ELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAM 475
+LYTN +KSD VRR++ + K +TAL+ IT+LKKLCNHPDL+ +KI GFEN+
Sbjct: 417 QLYTNFLKSDQVRRSLADCTD-KTTLTALADITTLKKLCNHPDLIYEKIAAREKGFENSQ 475
Query: 476 NILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535
N+LP +YK + ELS K M+LD MLA I+ +DDK+VL+SNYTQTLDLFE+L++
Sbjct: 476 NVLPP----NYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLAR 531
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPD 594
R Y YVRLDG+MTIKKR+KVV+ FN + + F+FMLSSKAGGCGLNLIGANRL MFDPD
Sbjct: 532 KRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPD 591
Query: 595 WNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
WNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D + +
Sbjct: 592 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIIDNNDSAEK 651
Query: 655 HFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRW 714
HF+ +L+ LF+ E N +SDTH+K+KC RC +Q +PPP SDCT LS W H + R
Sbjct: 652 HFTRDDLKDLFRFEANVLSDTHNKLKCKRCFQDVQRQPPPENSDCTSHLSQWFHCSNNRG 711
Query: 715 LVDPILKHCWGAG--VSFVFYQHS 736
L D IL W A VSFVF+ S
Sbjct: 712 LPDSILSQAWMASKCVSFVFHHRS 735
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
Identities = 429/744 (57%), Positives = 535/744 (71%)
Query: 1 RRSLAPSQ-LSKRSPEDSPGIKTFPPPV-KKEKRSCTSRKPLGSVDNEDEPNS---KLPM 55
RRSLAPSQ L R F PP+ KK KR+C D N LP+
Sbjct: 2 RRSLAPSQRLGVRIKSKD----AFTPPLLKKNKRACQQELEKRQSALRDATNIVELPLPI 57
Query: 56 TKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLY 115
SE+E I ++LA+ FKVPI NY ++LGVRR R+ALHDP A NALVL+
Sbjct: 58 RFTANSEYEQAIAKVLARKFKVPIANYVPDYGGNRSLGVRRSIVRRALHDPLACNALVLF 117
Query: 116 TPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIM 175
TPP + H+ + +D K+QVHVVVDP+LSN+LRPHQREGV+FMYECV G R GCIM
Sbjct: 118 TPPVYTEHERMSLDPSKLQVHVVVDPLLSNVLRPHQREGVRFMYECVEGKR-GSFNGCIM 176
Query: 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAAL 235
ADEMGLGKTLQC+TL WTLLRQ KP I KAI+V+PSSLVKNW E TKWL GR+ L
Sbjct: 177 ADEMGLGKTLQCVTLTWTLLRQSADCKPTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCL 236
Query: 236 PIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRL 295
++GGSK E L F R P+L+ISYETFR +A +L K EVG+V+CDEGHRL
Sbjct: 237 AMEGGSKEETTRTLEQFAMNTSTRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRL 296
Query: 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355
KN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +F++ +E I
Sbjct: 297 KNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAI 356
Query: 356 LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQK 415
LRGQ++ ++D ER +A + ++LIG+VN+C+IRRT+ +L+KYLPVK E VVC K+T +Q
Sbjct: 357 LRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQL 416
Query: 416 ELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAM 475
++YTN +KSD V R++ N K +TALS IT+LKKLCNHPDL+ +K+ GFEN+
Sbjct: 417 QIYTNFLKSDQVCRSLADC-NEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKGFENSQ 475
Query: 476 NILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK 535
N+LP A+YK + ELS K M+LD MLA I+ +DDK+VL+SNYTQTLDLFE+L++
Sbjct: 476 NVLP----ANYKPKDINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLAR 531
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPD 594
R Y YVRLDG+MTIKKR+KVV+ FN S++ F+FMLSSKAGGCGLNLIGANRL MFDPD
Sbjct: 532 KRKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPD 591
Query: 595 WNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
WNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D E V +
Sbjct: 592 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEK 651
Query: 655 HFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRW 714
HF+ +L+ LF E N +SDTH+K+KC RC +Q +PP +DCT LS W H + R
Sbjct: 652 HFTRDDLKDLFSFEANVLSDTHNKLKCKRCFQDVQRQPPADNTDCTSHLSQWFHCSNNRG 711
Query: 715 LVDPILKHCWGAG--VSFVFYQHS 736
L D IL W A VSFVF+ S
Sbjct: 712 LPDTILSQAWTASKCVSFVFHHRS 735
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 2149 (761.5 bits), Expect = 1.4e-222, P = 1.4e-222
Identities = 426/749 (56%), Positives = 546/749 (72%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTS---------RKPLGSV-DNEDEPN 50
RRSLAPSQ PE PP +KK KRSC R+ LG++ D +
Sbjct: 2 RRSLAPSQRGPLRPESRHSFT--PPLLKKNKRSCQQELEREQELDRRRLGALRDASNTSE 59
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPN 110
LP+ SE+E I ++LA+ FKVP+ NY + LGVRR +R+ LHDP A N
Sbjct: 60 LPLPIRFTANSEYELAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPMACN 119
Query: 111 ALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDA 170
ALVL+ PP + H+ + +D K+ VHVVVDP+LSNILRPHQREGV+FMYECV G R +
Sbjct: 120 ALVLFHPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR-GNF 178
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
GCIMADEMGLGKTLQC+TL+WTLLRQGP KP I+KAI+V+PSSLVKNW E TKWL G
Sbjct: 179 NGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLHG 238
Query: 231 RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCD 290
R+ LP++GG+K L F T R P+L+ISYETFR +A +L K EVG+V+CD
Sbjct: 239 RLLCLPMEGGTKENTIRALEQFSMTSARLGT-PVLLISYETFRIYAEILCKYEVGMVICD 297
Query: 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQ 350
EGHRLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EY+SLV+FVN +LGTA F++
Sbjct: 298 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRN 357
Query: 351 YETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+E+ ILRGQ++ +++ ER +A E+ ++LIG+V++C+IRRT+ +L+KYLPVK E V+C K+
Sbjct: 358 FESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKL 417
Query: 411 TDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADG 470
T +Q ELYTN +KSD VRR++ N K +TAL+ IT+LKK+C+HPDL+ +K+ G
Sbjct: 418 TAIQLELYTNFLKSDQVRRSLADC-NEKASLTALADITTLKKICSHPDLIYEKLTAREKG 476
Query: 471 FENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530
FEN+ N+LP+ +YK L ELS K M+LD MLA I+ +DK+VL+SNYTQTLDLF
Sbjct: 477 FENSQNVLPS----NYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLF 532
Query: 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLV 589
E+L++ R Y +VRLDG+M+IKKR+KVV+ FN S+ F+FMLSSKAGGCGLNLIGANRL
Sbjct: 533 EQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLF 592
Query: 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
MFDPDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D
Sbjct: 593 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 652
Query: 650 EDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHV 709
E +HF+ +L+ LF + N +SDTHDK+KC RCV IQ+KPPP ++DCT LS W+H
Sbjct: 653 ESAEKHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHC 712
Query: 710 TEKRWLVDPILKHCWG--AGVSFVFYQHS 736
+ R L D IL W VSFVF+ S
Sbjct: 713 SNNRGLPDNILAQAWMDCKCVSFVFHHRS 741
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 2140 (758.4 bits), Expect = 1.2e-221, P = 1.2e-221
Identities = 423/749 (56%), Positives = 544/749 (72%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTS---------RKPLGSV-DNEDEPN 50
RRSLAPSQ PE PP +KK KRSC RK ++ D + +
Sbjct: 2 RRSLAPSQRGPMRPESRHSFT--PPLLKKNKRSCQQELEREQELDRKRQSALRDASNTMD 59
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPN 110
LP+ SE+E I ++LA+ FKVP+ NY + LGVRR +R+ LHDP A N
Sbjct: 60 LPLPIRFTANSEYERAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPVACN 119
Query: 111 ALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDA 170
ALVL+ PP + H+ + +D K+ VHVVVDP+LSNILRPHQREGV+FMYECV G R +
Sbjct: 120 ALVLFNPPAYTEHERMGMDPTKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR-GNF 178
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
GCIMADEMGLGKTLQC+TL+WTLLRQGP KP I+KAI+V+PSSLVKNW E TKWL G
Sbjct: 179 NGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLQG 238
Query: 231 RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCD 290
R+ LP++GG+K L F T R P+L+ISYETFR +A +L K EVG+V+CD
Sbjct: 239 RLLCLPMEGGTKENTIRALEQFSMTSSRLGT-PVLLISYETFRIYAEILCKYEVGMVICD 297
Query: 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQ 350
EGHRLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EY+SLV+FVN +LGTA F++
Sbjct: 298 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRN 357
Query: 351 YETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+E+ ILRGQ++ +++ ER +A E+ ++LIG+V++C+IRRT+ +L+KYLPVK E V+C K+
Sbjct: 358 FESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKL 417
Query: 411 TDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADG 470
T +Q ELYTN +KSD VRR++ N K +TAL+ IT+LKK+C+HPDL+ +KI G
Sbjct: 418 TSIQLELYTNFLKSDQVRRSLADC-NEKASLTALADITTLKKICSHPDLIYEKITAREKG 476
Query: 471 FENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530
FEN+ N+LP+ +Y + L ELS K M+LD MLA I+ +DK+VL+SNYTQTLDLF
Sbjct: 477 FENSQNVLPS----NYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLV 589
E+L++ R Y +VRLDG+M+IKKR+KVV+ FN S+ F+FMLSSKAGGCGLNLIGANRL
Sbjct: 533 EQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLF 592
Query: 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
MFDPDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D
Sbjct: 593 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIIDNN 652
Query: 650 EDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHV 709
E +HF+ +L+ LF + + +SDTH+K+KC RCV +QVKPPP +DCT LS W+H
Sbjct: 653 ESAEKHFTRDDLKDLFTFDADILSDTHEKLKCKRCVQNVQVKPPPDNTDCTSHLSQWYHC 712
Query: 710 TEKRWLVDPILKHCWG--AGVSFVFYQHS 736
+ R L D IL W VSFVF+ S
Sbjct: 713 SNNRGLPDNILAQAWTDCKCVSFVFHHRS 741
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 2134 (756.3 bits), Expect = 5.4e-221, P = 5.4e-221
Identities = 424/749 (56%), Positives = 543/749 (72%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTS---------RKPLGSV-DNEDEPN 50
RRSLAPSQ PE PP +KK KRSC RK ++ D +
Sbjct: 2 RRSLAPSQRGPLRPESRHSFT--PPLLKKNKRSCQQELEREQELDRKRQSALRDASNTLE 59
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPN 110
LP+ SE+E I ++LA+ FKVP+ NY + LGVRR +R+ LHDP A N
Sbjct: 60 LPLPIRFTANSEYERAIAKVLARKFKVPMDNYVPDYGGKRVLGVRRCISRRPLHDPVACN 119
Query: 111 ALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDA 170
ALVL+ PP + H+ + +D K+ VHVVVDP+LSNILRPHQREGV+FMYECV G R +
Sbjct: 120 ALVLFHPPAYTEHERMGMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR-GNF 178
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
GCIMADEMGLGKTLQC+TL+WTLLRQGP KP I+KAI+V+PSSLVKNW E TKWL G
Sbjct: 179 NGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKWLQG 238
Query: 231 RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCD 290
R+ LP++GG+K L F T R P+L+ISYETFR +A +L K EVG+V+CD
Sbjct: 239 RLLCLPMEGGTKENTIRALEQFSMTSSRLGT-PVLLISYETFRIYAEILCKYEVGMVICD 297
Query: 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQ 350
EGHRLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EY+SLV+FVN +LGTA F++
Sbjct: 298 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRN 357
Query: 351 YETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+E+ ILRGQ++ ++DAER +A + ++LIG+V++C+IRRT+ +L+KYLPVK E V+C K+
Sbjct: 358 FESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKL 417
Query: 411 TDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADG 470
T +Q ELYTN +KSD VRR++ + K +TAL+ IT+LKK+C+HP+L+ +KI G
Sbjct: 418 TSIQLELYTNFLKSDQVRRSLADCKE-KASLTALADITTLKKICSHPNLIYEKITARDKG 476
Query: 471 FENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLF 530
FEN+ N+LP+ Y A L ELS K M+LD MLA I+ +DK+VL+SNYTQTLDLF
Sbjct: 477 FENSQNVLPSNYNAK----DLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLV 589
E+L++ R Y +VRLDG+M+IKKR+KVV+ FN S+ F+FMLSSKAGGCGLNLIGANRL
Sbjct: 533 EQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLF 592
Query: 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
MFDPDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D
Sbjct: 593 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 652
Query: 650 EDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHV 709
E +HF+ +L+ LF + + +SDTHDK+KC RCV IQ+KPPP ++DCT LS W+H
Sbjct: 653 ESAEKHFTRDDLKDLFTFDADILSDTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHC 712
Query: 710 TEKRWLVDPILKHCWG--AGVSFVFYQHS 736
+ R L D IL W VSFVF+ S
Sbjct: 713 SNNRGLPDNILAQAWMDCKCVSFVFHHRS 741
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 2121 (751.7 bits), Expect = 1.3e-219, P = 1.3e-219
Identities = 418/753 (55%), Positives = 544/753 (72%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPV--KKEKRSCTSRKPLGSVDNEDEP--------- 49
RRSLAPSQ R + + F PP+ KK KR+C L + +ED+
Sbjct: 2 RRSLAPSQ---RIGQSTASRNAFTPPLLQKKNKRACQKDLRLDTDADEDKERKRFGLRDA 58
Query: 50 -NSKLPMTKE--EMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDP 106
NS++P+ S +E I Q+LA+ FKVPI NY + LGVRR R+ LHDP
Sbjct: 59 TNSEIPLPIRFTANSAYELAIAQVLARKFKVPIDNYVPDYGGNRCLGVRRVVVRRPLHDP 118
Query: 107 TAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVR 166
A NALVL+ PP + H+ + +D K+ VHVVVDP+LSNILRPHQREGV+FMYECV G +
Sbjct: 119 QACNALVLFQPPNYTEHERMSMDPSKVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKK 178
Query: 167 IEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITK 226
D GCIMADEMGLGKTLQC+TL+WTLLRQGP +KP I+KAI+V+PSSLVKNW E TK
Sbjct: 179 -GDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTINKAIVVSPSSLVKNWEKEFTK 237
Query: 227 WLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGL 286
WL GR+ L ++GG+K L F T + P+L+ISYETFR +A +L K EVG+
Sbjct: 238 WLQGRLLCLAMEGGTKENTIRVLEQFSMTSSKLGT-PVLLISYETFRIYAEILCKYEVGM 296
Query: 287 VLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQE 346
V+CDEGHRLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +
Sbjct: 297 VICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAAD 356
Query: 347 FRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVV 406
F++ +E ILRGQ++ +++ ER KA E+ ++LIG+V++C+IRRT+ +L+KYLP+K E V+
Sbjct: 357 FKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVI 416
Query: 407 CIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQT 466
C+K+T +Q +LYTN + SD VRR++ N K +TAL+ IT+LKK+C+HPDL+ KI+
Sbjct: 417 CVKLTAIQLQLYTNFLNSDQVRRSLADC-NEKASLTALADITTLKKICSHPDLIHQKIEA 475
Query: 467 GADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQT 526
GFEN+ N+LP+ +YK ++ E S K M+LD MLA I+ +DK+VL+SNYTQT
Sbjct: 476 KEKGFENSQNVLPS----NYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQT 531
Query: 527 LDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGA 585
LDLFE+L++ R Y +VRLDG+M+IKKR+KVV+ FN +E F+FMLSSKAGGCGLNLIGA
Sbjct: 532 LDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGA 591
Query: 586 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645
NRL MFDPDWNPAND+QAMARVWRDGQKKPC++YR +++G+IEEK++QRQ HKK+LSS +
Sbjct: 592 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTI 651
Query: 646 VDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSC 705
+D E +HF+ +L+ LF ++ +SDTH+K+KC RCV IQ KPP +DCT LS
Sbjct: 652 IDNNESSEKHFTRDDLKDLFSFDQKILSDTHEKLKCKRCVQNIQTKPPSESTDCTSHLSQ 711
Query: 706 WHHVTEKRWLVDPILKHCWGAG--VSFVFYQHS 736
W+H + R L D IL W VSFVF+ S
Sbjct: 712 WYHCSNNRGLPDSILAQAWTDSKCVSFVFHHRS 744
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 2081 (737.6 bits), Expect = 2.2e-215, P = 2.2e-215
Identities = 413/746 (55%), Positives = 533/746 (71%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPV-KKEKRSCTS---RKPLGSVDNEDEPNSK---L 53
RRSLAPSQ R + F PP+ KK KR+C ++ L D N+ L
Sbjct: 2 RRSLAPSQ---RGGQRLSSRNDFTPPLLKKNKRACQQDLEQERLRQSALRDATNTSDLPL 58
Query: 54 PMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALV 113
P+ +E+E I ++LA+ FKVPI NY + LGVRR R+ LHDP A NALV
Sbjct: 59 PIRFTANTEYEMAIAKVLARKFKVPIDNYVPDYGGNRTLGVRRRIVRRPLHDPLACNALV 118
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGC 173
LY P + H+ + ++ + VHVVVDP+LSNILRPHQREGV+FMYECV G R + GC
Sbjct: 119 LYHAPNYTDHERMSMEPSSVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR-GNFNGC 177
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
IMADEMGLGKTLQC+ L+WTLL+Q KP I+K IIV+PSSLVKNW E TKWL GR+
Sbjct: 178 IMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMH 237
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
L ++GGSK L F R P+L+ISYETFR +A +L K EVG+V+CDEGH
Sbjct: 238 CLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEVGMVICDEGH 297
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +F++ +E
Sbjct: 298 RLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFEN 357
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
ILRGQ++ ++D ER +A E+ ++LI +V++C+IRRT+ +L+KYLPVK E V+C K+T +
Sbjct: 358 CILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPI 417
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
Q +LYTN +KSD VRR++ + K +TAL+ IT+LKKLC+HP+L+ +KI GFEN
Sbjct: 418 QLQLYTNFLKSDQVRRSLADCKE-KASLTALADITTLKKLCSHPNLICEKIAAEEKGFEN 476
Query: 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533
+ NILP Y G++ ELS K +LD MLA I+ +DK+VL+SNYTQTLDLFE+L
Sbjct: 477 SQNILPINYNPK---GEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQL 533
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFD 592
++ R Y +VRLDG+M+IKKR+KVV+ FN ++ F+FMLSSKAGGCGLNLIGANRL MFD
Sbjct: 534 ARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFD 593
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
PDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D E
Sbjct: 594 PDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESA 653
Query: 653 ARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEK 712
+HF+ +L+ LF + + +SDTHDK+KC RCV +Q+KPPP ++DCT LS W+H +
Sbjct: 654 EKHFTRDDLKDLFSFDPDILSDTHDKLKCKRCVQNVQMKPPPDDTDCTSHLSQWYHCSNN 713
Query: 713 RWLVDPILKHCWGAG--VSFVFYQHS 736
R L D IL W VSFVF+ S
Sbjct: 714 RGLPDNILAQAWTDSKCVSFVFHHRS 739
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 2080 (737.3 bits), Expect = 2.8e-215, P = 2.8e-215
Identities = 413/746 (55%), Positives = 532/746 (71%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPV-KKEKRSCTS---RKPLGSVDNEDEPNSK---L 53
RRSLAPSQ R + F PP+ KK KR+C ++ L D N+ L
Sbjct: 2 RRSLAPSQ---RGGQRLSSRNDFTPPLLKKNKRACQQDLEQERLRQSALRDATNTSDLPL 58
Query: 54 PMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALV 113
P+ +E+E I ++LA+ FKVPI NY + LGVRR R+ LHDP A NALV
Sbjct: 59 PIRFTANTEYEMAIAKVLARKFKVPIDNYVPDYGGNRTLGVRRRIVRRPLHDPLACNALV 118
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGC 173
LY P + H+ + ++ + VHVVVDP+LSNILRPHQREGV+FMYECV G R + GC
Sbjct: 119 LYHAPNYTDHERMSMEPSSVLVHVVVDPLLSNILRPHQREGVRFMYECVEGKR-GNFNGC 177
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
IMADEMGLGKTLQC+ L+WTLL+Q KP I+K IIV+PSSLVKNW E TKWL GR+
Sbjct: 178 IMADEMGLGKTLQCVALVWTLLKQSAECKPTINKCIIVSPSSLVKNWEKEFTKWLHGRMH 237
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
L ++GGSK L F R P+L+ISYETFR +A +L K EVG+V+CDEGH
Sbjct: 238 CLAMEGGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEVGMVICDEGH 297
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN ++ TYQALMGLK KRRVLLSGTPIQNDL EYFSLV+FVN +LGTA +F++ +E
Sbjct: 298 RLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFEN 357
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
ILRGQ++ ++D ER +A E+ ++LI +V++C+IRRT+ +L+KYLPVK E V+C K+T +
Sbjct: 358 CILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPI 417
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
Q +LYTN +KSD VRR++ + K +TAL+ IT+LKKLC+HP+L+ +KI G GFEN
Sbjct: 418 QLQLYTNFLKSDQVRRSLADCKE-KASLTALADITTLKKLCSHPNLICEKIAAGEKGFEN 476
Query: 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533
+ NILP Y G++ ELS K +LD MLA I+ +DK+VL+SNYTQTLDLFE L
Sbjct: 477 SQNILPINYNPK---GEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELL 533
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFD 592
++ R Y +VRLDG+M+IKKR+KVV+ FN ++ F+FMLSSKAGGCGLNLIGANRL MFD
Sbjct: 534 ARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFD 593
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
PDWNPAND+QAMARVWRDGQKKPC++YR +++GSIEEK++QRQ HKK+LSS ++D E
Sbjct: 594 PDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESA 653
Query: 653 ARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEK 712
+HF+ +L+ LF + + +SDTHDK+KC RCV +Q+ PPP ++DCT LS W+H +
Sbjct: 654 EKHFTRDDLKDLFSFDPDILSDTHDKLKCKRCVQNVQMMPPPDDTDCTSHLSQWYHCSNN 713
Query: 713 RWLVDPILKHCWGAG--VSFVFYQHS 736
R L D IL W VSFVF+ S
Sbjct: 714 RGLPDNILAQAWTDSKCVSFVFHHRS 739
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 2012 (713.3 bits), Expect = 4.6e-208, P = 4.6e-208
Identities = 412/739 (55%), Positives = 521/739 (70%)
Query: 3 SLAPSQLS-KRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMS 61
S++PS+ +R + P I+ PPV E+ S PL V N D + ++ E S
Sbjct: 73 SVSPSKQGLRRRKKALPAIE---PPVSVEEAS-----PLRFV-NIDVFSRRMA---SESS 120
Query: 62 EHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLS 121
+H+ +I ++L++ F +P+ Y G S G RR + AL DP AL+LY P LS
Sbjct: 121 DHDAMIAKLLSRKFSIPMEGYMLSGRSLGLGGNRR---KCALFDPYHEGALILYAPEHLS 177
Query: 122 AHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGL 181
H LK DKD+ +VHVV DPV+ ILRPHQR+GVKFM++CVTG+ I + +GCIMADEMGL
Sbjct: 178 EHAQLKEDKDR-KVHVVADPVVGKILRPHQRDGVKFMWDCVTGINIPEFHGCIMADEMGL 236
Query: 182 GKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS 241
GKTLQCI+L+WTLLRQ P A P + K+IIV PSSLVKNW EI KWLG R+ A+P+D G
Sbjct: 237 GKTLQCISLLWTLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLNAMPVDSGK 296
Query: 242 KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301
+ +I LNSFM R P+L+ISYETFR +A++LH +VG+V+CDEGHRLKN E+
Sbjct: 297 REQIIACLNSFMADSKMRCAIPVLIISYETFRLYANILHSGDVGIVICDEGHRLKNSENL 356
Query: 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDS 361
TYQAL GLK RRVL+SGTPIQNDLLEYFSLV+FVN G+LGTA EFRK++E IL+G+D+
Sbjct: 357 TYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDA 416
Query: 362 CASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL 421
AS ++ K E+ +++I +V +C+IRRTSALL+KYLPVK E ++C K + LQ+ LY L
Sbjct: 417 DASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKL 476
Query: 422 IKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN-AMNILPT 480
I+ + R ++ + +ALS IT LKKLCNHP LV D+ Q + F N ++I P
Sbjct: 477 IECEKQNRIVEKDKGATA--SALSFITHLKKLCNHPYLVYDEFQKPDNRFRNKCLSIFPE 534
Query: 481 GYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYK 540
S+ S K+ VLD +LAV + TTDDK VLVSNYTQT+D F L KLRGY
Sbjct: 535 ----SFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYD 590
Query: 541 YVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
+VRLDGSM+IK+R+K+V+TFN S F F+LSSKAGGCGLNLIGANRLVMFDPDWNPAN
Sbjct: 591 FVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPAN 650
Query: 600 DDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMS 659
DDQAMARVWRDGQKK CF+YR L+TGSIEEKM QRQ HKKALSSCVVD EDVARHFS
Sbjct: 651 DDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSE 710
Query: 660 ELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEK-RWLVDP 718
+LR LF+LE SDTH+K+KC RC+ G++ PP +DC DLS W H + R + D
Sbjct: 711 QLRELFKLESTVASDTHEKLKCKRCIQGVESVDPPTNADCASDLSNWFHSQKSARKVADN 770
Query: 719 ILKHCWGAG-VSFVFYQHS 736
+L+ + G +SFVF+Q S
Sbjct: 771 VLRAVFECGSISFVFHQKS 789
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 1614 (573.2 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 336/635 (52%), Positives = 437/635 (68%)
Query: 118 PQLSAHDLLKIDKDKIQ---VHVVVDPVLSNILRPHQREGVKFMYECVTGVRIED-AYGC 173
P S DLL I K+K V VV+DP L+ ILRPHQ EGVKF+Y+CVTG RI+ A GC
Sbjct: 232 PNKSLKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTG-RIDRCANGC 290
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
IMADEMGLGKTLQCI L+WTLL+Q P A KP I+KAII PSSLVKNW NE+ KWLG +
Sbjct: 291 IMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKWLG-KD 349
Query: 233 AALP--IDG-GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLC 289
A P +DG SK E+ L + +GR+ P+L+ SYET RS+ L+ E+G++LC
Sbjct: 350 AITPFILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEIGMLLC 409
Query: 290 DEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRK 349
DEGHRLKN +S T+ AL L +RRV+LSGTPIQNDL EYFSL++F N G+LG+ QEFRK
Sbjct: 410 DEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRK 469
Query: 350 QYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIK 409
YE PIL+G+D+ ++ ++ + +L +L IVNR +IRRT+ +LSKYLPVK E VV
Sbjct: 470 NYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYEHVVFCN 529
Query: 410 MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGAD 469
+++ Q LY + I S + + ++G G L +I LKK+CNHPDL+ + +
Sbjct: 530 LSEFQLSLYKHFITSPEINKILRG-----TGSQPLKAIGLLKKICNHPDLL--NLTEDLE 582
Query: 470 GFENAMNILPTGYAASYKSGK---LLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQT 526
G E + P G+ G+ + LS K++VL+ ML IK TDDKIVL+SNYT T
Sbjct: 583 GCEA---LFPPGFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTST 639
Query: 527 LDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGA 585
LDLFE+L + RGYK +RLDG+M + KR ++V+TFN + F+F+LSSKAGGCG+NLIGA
Sbjct: 640 LDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGA 699
Query: 586 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645
NRL++FDPDWNPA D QA+ARVWRDGQKK CFVYRF++TG+IEEK+ QRQ+HK++LSSCV
Sbjct: 700 NRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCV 759
Query: 646 VDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQ-VKPPPLESDCTDDLS 704
VD +DV RHFS+ LR LFQL ++T+ +TH+ KC RC +G Q ++ P + D S
Sbjct: 760 VDEAQDVERHFSLDNLRQLFQLNDHTVCETHETYKCKRCRDGKQFIRAPAM---LYGDTS 816
Query: 705 CWHHVTEKRW--LVDPILKHCWGAG-VSFVFYQHS 736
W+H T + D +LK G VS VF S
Sbjct: 817 TWNHFTNPTLDRIEDHLLKREAGKQQVSTVFQYKS 851
Score = 47 (21.6 bits), Expect = 1.5e-168, Sum P(2) = 1.5e-168
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 92 LGVRR--EGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSN 145
LG++R + + L+DP A+VLY P A +++ K+ + D +L N
Sbjct: 133 LGMKRKVDFIPRPLYDPADEFAIVLYDPTT-DADEIIPDIKEVLAEKRKKDELLKN 187
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 1564 (555.6 bits), Expect = 2.1e-167, Sum P(2) = 2.1e-167
Identities = 321/600 (53%), Positives = 414/600 (69%)
Query: 121 SAHDLLKIDK---DKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMAD 177
S D+L + K ++ +V VV+DP L+ +LRPHQ V+F+Y C TG+ +A+GCIMAD
Sbjct: 214 SLADILGLKKKVENRPKVPVVIDPRLAKVLRPHQ---VQFLYRCTTGMIDRNAHGCIMAD 270
Query: 178 EMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVKNWCNEITKWLG-GRVAAL 235
MGLGKTLQCI+LMWTLL+Q P A K I K II PSSLV NW NE+ KWLG +
Sbjct: 271 GMGLGKTLQCISLMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDTITPF 330
Query: 236 PIDG-GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHR 294
+DG SK E+ ++L + + GR V P+L++SYET R + L + +GL+LCDEGHR
Sbjct: 331 AVDGKASKTELTSQLKQWAISSGRSIVRPVLIVSYETLRMYVDTLKDSPIGLLLCDEGHR 390
Query: 295 LKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETP 354
LKN ES T+ AL L +RRV+LSGTPIQNDL EYF+L++F N +LG+ EFRK++E P
Sbjct: 391 LKNKESLTWTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQNEFRKRFEIP 450
Query: 355 ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414
IL+G+D+ ++ +R K +ERL +L IVN+ +IRRT+ +LSKYLPVK E VV ++ Q
Sbjct: 451 ILKGRDAAGTEEDRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHVVFCNLSQFQ 510
Query: 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENA 474
+LY + I S ++ ++G G L +I LKKLCNHPDL+ + T G E+A
Sbjct: 511 LDLYKHFIDSPEIKSLLRGK-----GSQPLKAIGILKKLCNHPDLL--NLSTDLPGCEHA 563
Query: 475 MNILPTGYAASYKSGK---LLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
P Y G+ + S K+MVLD MLA I+ T+DKIVL+SNYTQTLDLFE
Sbjct: 564 F---PDDYVPVEARGRDRDVRPWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFE 620
Query: 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVM 590
+L + R Y +RLDG+M +KKR K+V+ FN E F+F+LSSKAGGCGLNLIGANRLV+
Sbjct: 621 KLCRSRAYGCLRLDGTMNVKKRQKLVDKFNDPDGEEFVFLLSSKAGGCGLNLIGANRLVL 680
Query: 591 FDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE 650
FDPDWNPA D QA+ARVWRDGQKK CFVYRF++TGSIEEK+ QRQ+HK++LSSCVVD E
Sbjct: 681 FDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 740
Query: 651 DVARHFSMSELRSLFQLEENTISDTHDKIKCSRC-VNGIQ-VKPPPLESDCTDDLSCWHH 708
DV RHFS+ LR LFQ + T SDTHD KC RC +G Q +K P + D S W+H
Sbjct: 741 DVERHFSLDSLRELFQFKPGTTSDTHDTFKCKRCRADGTQYIKAPAM---LYGDTSSWNH 797
Score = 86 (35.3 bits), Expect = 2.1e-167, Sum P(2) = 2.1e-167
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 75 FKVPILNYTGGGYSTK----ALGVRREGAR---KALHDPTAPNALVLYTPPQLSAHDLLK 127
FKVP++N + G Y + LG+R +GA K LHDP+ A+VLY P + D +K
Sbjct: 134 FKVPLINKSTGTYDSSRPAPTLGMR-QGASFVVKPLHDPSGEFAIVLYDPT-VDDIDEVK 191
Query: 128 IDK------DKIQV--HVVVDPVLSNIL 147
+K DKIQ +V L++IL
Sbjct: 192 PEKQDNDASDKIQKLDEPIVHKSLADIL 219
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 1524 (541.5 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 311/590 (52%), Positives = 403/590 (68%)
Query: 135 VHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL 194
V VV+DP L+ ILRPHQ GVKF+Y C G+ A GCIMADEMGLGKTLQC+TLMWTL
Sbjct: 244 VPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 195 LRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG-GRVAALPIDGGS--KAEIDNKLNS 251
LRQ P K I+K IIV PSSLV+NW NEI KWLG G + L +DG S +E+ L
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNSELGTALQQ 363
Query: 252 FMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKA 311
+ GR V P+L+ISYET R + L EVGL+L DEGHRLKN +S T+ AL L+
Sbjct: 364 WSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFTALNSLRC 423
Query: 312 KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKA 371
+RRV+LSGTPIQNDL EYFSL++F N G LGT EF+K YE IL+G+DS ASD ER K
Sbjct: 424 ERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKG 483
Query: 372 NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
+++L +L +V++ +IRRT+ +LSKYLP+K E V+ ++ +QK++Y + I S +++ M
Sbjct: 484 DKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLM 543
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSG-- 489
KG G L +I LKKLCNHPDL +D + +G E +P Y +S G
Sbjct: 544 KG-----TGSQPLKAIGMLKKLCNHPDL-LD-LPEDVEGSEE---FIPDDYQSSIAGGSA 593
Query: 490 ----KLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ S K ++L+ L I TDDKIVL+SNYTQTLDL E++ + + Y +RLD
Sbjct: 594 SRNREIQTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLD 653
Query: 546 GSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G+M I KR K+V+ FN + EFIF+LSSKAGGCG+NLIGANRLV+ DPDWNPA+D QA+
Sbjct: 654 GTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQAL 713
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
ARVWRDGQKK CF+YRF+STG+IEEK+ QRQ+ K +LSSCVVD +EDV R FS++ LR L
Sbjct: 714 ARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVANLRQL 773
Query: 665 FQLEENTISDTHDKIKCSRCVN--GIQVKPPPLESDCTDDLSCWHHVTEK 712
F+ + +T DTHD C+RC G +K P + D + W+H+ +
Sbjct: 774 FKFQPDTQCDTHDTFNCNRCKGDKGQFIKAPAM---LYGDATTWNHLNHQ 820
Score = 63 (27.2 bits), Expect = 9.6e-161, Sum P(2) = 9.6e-161
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 7 SQLSKRSPEDSPGIK-TFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLP 54
S S SPE P K T P+K+++ + + LG V N +E SK P
Sbjct: 194 STSSSTSPEPEPETKETEERPIKRKRTHKSLAEILGIVTNPEEKLSKYP 242
Score = 60 (26.2 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 101 KALHDPTAPNALVLYTP 117
+ALHDPT+ A+VLY P
Sbjct: 164 RALHDPTSEFAIVLYDP 180
Score = 60 (26.2 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 37 RKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRR 96
RKPL + +P K ++ R L+KPFKVP + T S++ + + R
Sbjct: 4 RKPLTQFTTPLGSGAGVPKDKRPPRVTDSATR--LSKPFKVPFSSSTQNSVSSETITISR 61
Query: 97 EGAR 100
R
Sbjct: 62 RPVR 65
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 1524 (541.5 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 311/590 (52%), Positives = 403/590 (68%)
Query: 135 VHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL 194
V VV+DP L+ ILRPHQ GVKF+Y C G+ A GCIMADEMGLGKTLQC+TLMWTL
Sbjct: 244 VPVVIDPKLAKILRPHQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 195 LRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG-GRVAALPIDGGS--KAEIDNKLNS 251
LRQ P K I+K IIV PSSLV+NW NEI KWLG G + L +DG S +E+ L
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKNSELGTALQQ 363
Query: 252 FMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKA 311
+ GR V P+L+ISYET R + L EVGL+L DEGHRLKN +S T+ AL L+
Sbjct: 364 WSTAQGRNIVRPVLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFTALNSLRC 423
Query: 312 KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKA 371
+RRV+LSGTPIQNDL EYFSL++F N G LGT EF+K YE IL+G+DS ASD ER K
Sbjct: 424 ERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKG 483
Query: 372 NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
+++L +L +V++ +IRRT+ +LSKYLP+K E V+ ++ +QK++Y + I S +++ M
Sbjct: 484 DKKLNELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLM 543
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSG-- 489
KG G L +I LKKLCNHPDL +D + +G E +P Y +S G
Sbjct: 544 KG-----TGSQPLKAIGMLKKLCNHPDL-LD-LPEDVEGSEE---FIPDDYQSSIAGGSA 593
Query: 490 ----KLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ S K ++L+ L I TDDKIVL+SNYTQTLDL E++ + + Y +RLD
Sbjct: 594 SRNREIQTWFSGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLD 653
Query: 546 GSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G+M I KR K+V+ FN + EFIF+LSSKAGGCG+NLIGANRLV+ DPDWNPA+D QA+
Sbjct: 654 GTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQAL 713
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
ARVWRDGQKK CF+YRF+STG+IEEK+ QRQ+ K +LSSCVVD +EDV R FS++ LR L
Sbjct: 714 ARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVANLRQL 773
Query: 665 FQLEENTISDTHDKIKCSRCVN--GIQVKPPPLESDCTDDLSCWHHVTEK 712
F+ + +T DTHD C+RC G +K P + D + W+H+ +
Sbjct: 774 FKFQPDTQCDTHDTFNCNRCKGDKGQFIKAPAM---LYGDATTWNHLNHQ 820
Score = 63 (27.2 bits), Expect = 9.6e-161, Sum P(2) = 9.6e-161
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 7 SQLSKRSPEDSPGIK-TFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLP 54
S S SPE P K T P+K+++ + + LG V N +E SK P
Sbjct: 194 STSSSTSPEPEPETKETEERPIKRKRTHKSLAEILGIVTNPEEKLSKYP 242
Score = 60 (26.2 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 101 KALHDPTAPNALVLYTP 117
+ALHDPT+ A+VLY P
Sbjct: 164 RALHDPTSEFAIVLYDP 180
Score = 60 (26.2 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 37 RKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRR 96
RKPL + +P K ++ R L+KPFKVP + T S++ + + R
Sbjct: 4 RKPLTQFTTPLGSGAGVPKDKRPPRVTDSATR--LSKPFKVPFSSSTQNSVSSETITISR 61
Query: 97 EGAR 100
R
Sbjct: 62 RPVR 65
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 1433 (509.5 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 302/578 (52%), Positives = 386/578 (66%)
Query: 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229
AYGCIMADEMGLGKTLQCI LMWTLLRQGP K LIDK IIV PSSLV NW NE+ KWLG
Sbjct: 328 AYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLG 387
Query: 230 -GRVAALPIDG------GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKN 282
+ L +DG G + ++++ Q GR V P+L+ISYET R + L
Sbjct: 388 PNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNC 447
Query: 283 EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILG 342
VGL+L DEGHRLKN +S T+ AL + RRV+LSGTPIQNDL EYF+L+ F N G+LG
Sbjct: 448 NVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLG 507
Query: 343 TAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKT 402
+ EFRK +E PILRG+D+ A+D E TK +L++L IV++ +IRRT+ +L+KYLP K
Sbjct: 508 SRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKY 567
Query: 403 EQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMD 462
E V+ + + LQ ELY LIKS V++ +KG G L +I LKKLCNHP+L+
Sbjct: 568 EHVIFVNLKPLQNELYNKLIKSREVKKVVKGVG----GSQPLRAIGILKKLCNHPNLLNF 623
Query: 463 KIQTGADGFENAMNI-LPTGY-AASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
+ D F++ ++ LP Y K+ + + SAK +L+ L IK +DDKIVL+
Sbjct: 624 E-----DEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLI 678
Query: 521 SNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCG 579
SNYTQTLDL E++ + + Y VRLDG+M+I KR K+V+ FN EFIF+LSSKAGGCG
Sbjct: 679 SNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCG 738
Query: 580 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639
+NLIGANRL++ DPDWNPA D QA+ARVWRDGQKK CF+YRF+STG+IEEK+ QRQ+ K
Sbjct: 739 INLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKM 798
Query: 640 ALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRC-VNGIQVKPPPLESD 698
+LSSCVVD +EDV R FS LR LFQ ENTI +TH+ C RC G Q+K P +
Sbjct: 799 SLSSCVVDAKEDVERLFSSDNLRQLFQKNENTICETHETYHCKRCNAQGKQLKRAP--AM 856
Query: 699 CTDDLSCWHHVTEKRW--LVDPILK--HCWGAGVSFVF 732
D + W+H+ D +LK H + +SF F
Sbjct: 857 LYGDATTWNHLNHDALEKTNDHLLKNEHHYN-DISFAF 893
Score = 122 (48.0 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 129 DKDKI-QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIED 169
+K K V VV+DP L+ ILRPHQ EGV+F+Y CVTG+ ++D
Sbjct: 252 NKKKFASVPVVIDPKLAKILRPHQVEGVRFLYRCVTGLVMKD 293
Score = 75 (31.5 bits), Expect = 1.2e-163, Sum P(3) = 1.2e-163
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 67 IRQILAKPFKVPILNYTGGGYSTKALGVRRE--GARKALHDPTAPNALVLYTPP---QLS 121
I+ L + F VPI Y LG++++ + LHDPT A+VLY P ++
Sbjct: 123 IQYTLRRSFTVPIKGYVQRHSLPLTLGMKKKITPEPRPLHDPTDEFAIVLYDPSVDGEMI 182
Query: 122 AHDLLKIDKDK 132
HD +K++
Sbjct: 183 VHDTSMDNKEE 193
Score = 38 (18.4 bits), Expect = 9.7e-160, Sum P(3) = 9.7e-160
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 71 LAKPFKVPILN 81
L KPF+VP N
Sbjct: 36 LTKPFRVPYKN 46
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 1352 (481.0 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 288/591 (48%), Positives = 391/591 (66%)
Query: 113 VLYTPPQLSAHDLLKIDKDKIQ--VHVVVDPVLSNILRPHQREGVKFMYECVTGVR-IED 169
V+ PP + L + ++D + ++V VL LRPHQREGV+FM++CV+G+ +
Sbjct: 144 VVCLPPDIEPLVLWQSEEDGMSNVTTIMVHSVLVKFLRPHQREGVQFMFDCVSGLHGSAN 203
Query: 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229
GCI+AD+MGLGKTLQ ITL++TLL QG P++ KAIIV P+SLV NW EI KW+G
Sbjct: 204 INGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVG 263
Query: 230 GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNE-VGLVL 288
R+ + + ++ ++ + ++SF + R +L+ISYETFR H+S ++E L++
Sbjct: 264 DRIQLIALCESTRDDVLSGIDSFTRP---RSALQVLIISYETFRMHSSKFCQSESCDLLI 320
Query: 289 CDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFR 348
CDE HRLKN ++ T +AL L KRRVLLSGTP+QNDL E+F++V+F N G LG A FR
Sbjct: 321 CDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFR 380
Query: 349 KQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI 408
YE PI+ G++ A++ E+ A +R +L VN+ ++RRT+ALLS +LP K +VVC
Sbjct: 381 HYYEAPIICGREPTATEEEKNLAADRSAELSSKVNQFILRRTNALLSNHLPPKIIEVVCC 440
Query: 409 KMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGA 468
KMT LQ LY + I S ++R + +N K L+ IT+LKKLCNHP L+ D I++G
Sbjct: 441 KMTTLQSTLYNHFISSKNLKRAL--ADNAKQ-TKVLAYITALKKLCNHPKLIYDTIKSGN 497
Query: 469 DG---FENAMNILP----TGYAASYKSGK-LLIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
G FEN + P +G + ++ G +ELS K+ VL +LA ++ TDD+IVLV
Sbjct: 498 PGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSGKMHVLSRLLANLRRKTDDRIVLV 557
Query: 521 SNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCG 579
SNYTQTLDLF +L + R Y ++RLDGS TI KR K+V N T +EF F+LSSKAGGCG
Sbjct: 558 SNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCG 617
Query: 580 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639
LNLIGANRLV+FDPDWNPAND QA ARVWRDGQKK +VYRFLSTG+IEEK+ QRQ K+
Sbjct: 618 LNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSKE 677
Query: 640 ALSSCVVDCEEDVARH----FSMSELRSLFQLEENTISDTHDKIKCSRCVN 686
L + + D + S +LR LF + S+ H+K+ CSRC N
Sbjct: 678 GLQKVIQHEQTDNSTRQGNLLSTEDLRDLFSFHGDVRSEIHEKMSCSRCQN 728
Score = 64 (27.6 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKI----KCSRCVNG 687
++ + H+K SC C+ D + ++ E +++N + I K + C N
Sbjct: 713 VRSEIHEKM--SCS-RCQNDASGTENIEEGNEN-NVDDNACQIDQEDIGGFAKDAGCFNL 768
Query: 688 IQVKPPPLESDCTDDLSCW-HHVTEKRWLVDPILKHCWGAGVSFVF 732
++ + + +DL W HH T K + D IL+ G V+FVF
Sbjct: 769 LKNSERQVGTPLEEDLGSWGHHFTSKS-VPDAILQASAGDEVTFVF 813
Score = 51 (23.0 bits), Expect = 1.9e-146, Sum P(3) = 1.9e-146
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 70 ILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKID 129
+ KPFK P + GY + RR ARK + +V+ P +L A I+
Sbjct: 84 VCRKPFKPPCSH----GYDSTGQLSRRLSARKRFVPWGSSTPVVVALPTKLEAST--NIE 137
Query: 130 KDKIQVHVVVDPVLSN-ILRPHQREGV 155
+D+ + V + P + +L + +G+
Sbjct: 138 RDEEEEVVCLPPDIEPLVLWQSEEDGM 164
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 1254 (446.5 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 276/622 (44%), Positives = 385/622 (61%)
Query: 71 LAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDK 130
++K F P L GG + L + K +DP AP ALV+ P+ +A + +K
Sbjct: 239 VSKSFTKPALK--GGALTDSELD---KPICKPRYDPNAPGALVM---PRPTADHQWQYNK 290
Query: 131 DKIQ-VHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT 189
V VV+DP L+N LRPHQ+EGV F+YEC+ G+R+ G I+ADEMGLGKTLQC+
Sbjct: 291 SGAPLVDVVIDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVC 350
Query: 190 LMWTLLRQGPLA-KPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDN 247
++WTLLRQGP +P++ +A++V P SLVKNW E KWLG R++ +D D+
Sbjct: 351 VLWTLLRQGPYGGRPVMKRALVVCPGSLVKNWAAEFNKWLGRERISVYTVDQ------DH 404
Query: 248 KLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALM 307
++ F+ + P+ +LVISYE L + + G+++CDEGHRLKN +T AL
Sbjct: 405 RVEDFVSS----PLCSVLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALT 460
Query: 308 GLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAE 367
L RR++L+GTP+QNDL E++S++ FVN GILGT+ +RK YE PILR + ++ E
Sbjct: 461 ALSCTRRLILTGTPVQNDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTEEE 520
Query: 368 RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
R ER +L + +RRT ++++YL + E V K T+LQ LY L+ + +
Sbjct: 521 RCIGEERAAELFRLTGVFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPI 580
Query: 428 RRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADG-FENAMNILPTGYAASY 486
R + G +T L I +LKKLCNHP L+ + +Q AD +E + L + Y
Sbjct: 581 RACLSGS-HTYTHSPHLVCINALKKLCNHPALLYNTLQEKADEMYEGEVKEL---FPEEY 636
Query: 487 KSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
+G S KL+VL +L+ I+ + D++VLVSN+TQTLDL + + GYK+ RLD
Sbjct: 637 STGAFSTADSGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLD 696
Query: 546 GSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G + +R K+V++FN S+ F+ +LSSKAGG GLNLIGA+ LV++D DWNPAND QAM
Sbjct: 697 GQTPVGQRQKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAM 756
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH--FSMSELR 662
ARVWRDGQKK +YRFL+TGSIEEK+ QRQ K+ LS VVD + A H FS ELR
Sbjct: 757 ARVWRDGQKKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKK-AEHISFSAEELR 815
Query: 663 SLFQLEENTISDTHDKIKCSRC 684
LF+ + NT THD + C +C
Sbjct: 816 DLFRFDPNTTCLTHDLLNC-KC 836
Score = 45 (20.9 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPP-PVKKEKRSCTSRKP 39
RRS APSQL + + P + PP P + + C +P
Sbjct: 2 RRSGAPSQLRGNAAK-KP--RFMPPGPARNDGAPCLDPQP 38
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 1235 (439.8 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 274/595 (46%), Positives = 368/595 (61%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYE 160
K HDP APN+LV+ P + H K V VV+DP L LRPHQ+EG+ F+YE
Sbjct: 253 KPRHDPHAPNSLVMSRPD--NNHQWTFNKKGFPVVDVVIDPHLVYHLRPHQKEGIMFLYE 310
Query: 161 CVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVKN 219
CV G+R+ G I+ADEMGLGKTLQCI+L+WTL QGP KP++ K +IV P SLV N
Sbjct: 311 CVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVVKKTLIVTPGSLVNN 370
Query: 220 WCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV 278
W E KWLG R+ P+D D+K+ F R P +L+ISYE
Sbjct: 371 WRKEFQKWLGSERIKIFPVDQ------DHKVEEFT----RSPFYSVLIISYEMLLRSLDQ 420
Query: 279 LHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338
+ + GL++CDEGHRLKN +T AL+ L ++RV+L+GTP+QNDL E+F+L+ FVN
Sbjct: 421 IKNVKFGLLICDEGHRLKNSAIKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNP 480
Query: 339 GILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYL 398
GILG+ +RK YE PI+ + AS+ E+ +R +L + ++RRT +++KYL
Sbjct: 481 GILGSLSFYRKVYEEPIIISRQPSASEEEKKLGEKRAVELTCLTGLFILRRTQEVINKYL 540
Query: 399 PVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA-LSSITSLKKLCNHP 457
P K E VV + LQ ELY L+ S AVR ++G LG + L I +LKKLCNHP
Sbjct: 541 PPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQG----LLGNSPHLICIGALKKLCNHP 596
Query: 458 DLVMDKIQTGA-----DGFE--NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI- 509
L+ + I+ DG E + L + A Y E S KL VL +LAVI
Sbjct: 597 CLLFNSIKEKECSSTWDGKEEKSLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIH 656
Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN-KTSNEFI 568
++ +K+VLVSNYTQTLD+ + + K GY Y RLDG + +R ++V++FN K S++FI
Sbjct: 657 ELRPTEKVVLVSNYTQTLDILQEVCKRHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFI 716
Query: 569 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628
F+LSSKAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK P +YR L+TG+IE
Sbjct: 717 FLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGTIE 776
Query: 629 EKMMQRQAHKKALSSCVVDCEEDVARH--FSMSELRSLFQLEENTISDTHDKIKC 681
EK+ QRQ K+ LS VVD + H FS+ EL++LF L E++ THD + C
Sbjct: 777 EKIYQRQISKQDLSGAVVDLTR-TSEHIQFSVEELKNLFTLHESSHCVTHDLLDC 830
Score = 38 (18.4 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPP 25
RRS APSQL + +P +K PP
Sbjct: 2 RRSAAPSQL-QGNPLKK--LKFVPP 23
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 1223 (435.6 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 275/622 (44%), Positives = 377/622 (60%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQV-HVVVDPVLSNILRPHQREGVKFMY 159
K HDP APN+LV+ P + H L +K+ V VV+DP L LRPHQ+EG+ F+Y
Sbjct: 252 KPRHDPYAPNSLVMLRPDK--NHQWL-FNKNCFPVVDVVIDPHLVYYLRPHQKEGITFLY 308
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVK 218
ECV G+R+ G I+ADEMGLGKTLQCI+L+WTL QGP KP++ K +IV P SLV
Sbjct: 309 ECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPIVKKTLIVTPGSLVN 368
Query: 219 NWCNEITKWLG-GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS 277
NW E KWLG R+ +D D+K+ F ++ P +L+ISYE
Sbjct: 369 NWKKEFQKWLGIERIKIFTVDQ------DHKVEEFTKS----PFYSVLIISYEMLLRSLD 418
Query: 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
+ + L++CDEGHRLKN +T AL+ L ++R++L+GTP+QNDL E+F+L+ FVN
Sbjct: 419 QIKNVKFDLLICDEGHRLKNSTIKTTTALISLSCEKRIILTGTPVQNDLQEFFTLIDFVN 478
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
GILG+ +RK YE PI+ + AS+ ER +R +L + ++RRT ++++Y
Sbjct: 479 PGILGSLSAYRKIYEEPIIISRQPSASEEERELGEQRAAELTCLTGLFILRRTQEVINQY 538
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGG-ENTKLGMTALSSITSLKKLCNH 456
LP K E VV + LQ LY L+ S AVR ++G ENT + L I +LKKLCNH
Sbjct: 539 LPPKIENVVFCRPGALQIALYRKLLNSQAVRFCLQGLLENT----SHLICIGALKKLCNH 594
Query: 457 PDLVMDKIQTGADG-----------FENAMNILPTGYAASYKSGKLLIELSAKLMVLDTM 505
P L+ I+ +E MN+ P A Y E S KL VL +
Sbjct: 595 PCLLFGSIKEKESNSTWDESEERNLYEGLMNVFP----ADYNPIMFTEEESGKLQVLSKL 650
Query: 506 LAVIK-MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN-KT 563
LAVI+ + +K+VLVSNYT+TLD+ + + K GY Y RLDG I +R ++V+ FN K
Sbjct: 651 LAVIRELRPAEKVVLVSNYTRTLDILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSKY 710
Query: 564 SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLS 623
S++FIF+LSSKAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK P +YR L+
Sbjct: 711 SSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLT 770
Query: 624 TGSIEEKMMQRQAHKKALSSCVVDCEEDVARH--FSMSELRSLFQLEENTISDTHDKIKC 681
TG+IEEK+ QRQ K+ LS VVD + + H FS+ EL++LF L E++ THD + C
Sbjct: 771 TGTIEEKIYQRQISKQGLSGAVVDLSK-TSDHIQFSVEELKNLFTLHESSHCVTHDLLDC 829
Query: 682 SRCVN----GIQVKPPPLESDC 699
C G ++ P+ +C
Sbjct: 830 E-CTGENHTGDSLEKLPVSRNC 850
Score = 38 (18.4 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 1 RRSLAPSQLSKRSPEDSP 18
RRS APSQL + +P P
Sbjct: 2 RRSAAPSQL-QGNPFKKP 18
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 1216 (433.1 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 264/599 (44%), Positives = 375/599 (62%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQV-HVVVDPVLSNILRPHQREGVKFMY 159
K H+P N+LV+ P ++H + +K + V VVVDP ++N LRPHQREG+ F+Y
Sbjct: 259 KPRHNPNDTNSLVMPRPN--ASHQCM-FNKAGLPVVDVVVDPYIANNLRPHQREGIVFLY 315
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVK 218
ECV G+R+ +G I+ADEMGLGKTLQCI+L+WTLLRQG KP++ +A+IV P SLVK
Sbjct: 316 ECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVK 375
Query: 219 NWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS 277
NW E KWLG R+ +D D+K+ F+ + P+ +++ISYE
Sbjct: 376 NWKKEFQKWLGSERIKVFTVDQ------DHKVEEFISS----PLYSVMIISYEMLLRSLD 425
Query: 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
+ E L++CDEGHRLKN +T AL L +RR++L+GTPIQNDL E+++L+ FVN
Sbjct: 426 QIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVN 485
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
G+LG+ +RK YE PI+R ++ A+ E+ +R +L + ++RRT +++K+
Sbjct: 486 PGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILRRTQEVINKF 545
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGG-ENTKLGMTALSSITSLKKLCNH 456
LP K E ++ + T LQ ELY L+ S + ++G EN+ L I +LKKLCNH
Sbjct: 546 LPPKKENIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSP----HLICIGALKKLCNH 601
Query: 457 PDLVMDKIQTGA-D--GFENAMNILPTG----YAASYKSGKLLIELSAKLMVLDTMLAVI 509
P L+ ++ D E+ + L G + Y S S KL VL +LA I
Sbjct: 602 PCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAI 661
Query: 510 K-MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN-KTSNEF 567
+ +++ +++VLVSNYTQTL++ K GY Y RLDG+ + +R ++V++FN K S F
Sbjct: 662 RELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAF 721
Query: 568 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627
IF+LSSKAGG GLNL+GA+ L+++D DWNPA D QAMARVWRDGQK +YR L+TG+I
Sbjct: 722 IFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTI 781
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDVAR-HFSMSELRSLFQLEENTISDTHDKIKCSRCV 685
EEK+ QRQ K+ LS VVD + HFS+ ELR+LF L EN+ THD ++C C+
Sbjct: 782 EEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSSCVTHDLLECD-CM 839
Score = 38 (18.4 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 28/116 (24%), Positives = 47/116 (40%)
Query: 1 RRSLAPSQL----SKRSPEDSPG-IKTFPPPVKKEKRSCTSR-KPLGSVDNEDEPNSKLP 54
RRS APSQ+ +K+ PG P ++ E+ + K +G E N+ L
Sbjct: 2 RRSAAPSQVLGNVAKKPRFIPPGKSNALCPKIETEETDQDVKLKEIG----EKHGNASLF 57
Query: 55 MTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKA--LHDPTA 108
++ EN + + + KV L ++ + A KA +H PT+
Sbjct: 58 SEMFSENQSENFTQSVESSG-KVKSTKAWNSTSKCSKLEMKTQSAPKADAMHLPTS 112
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 1210 (431.0 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 264/601 (43%), Positives = 376/601 (62%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQV-HVVVDPVLSNILRPHQREGVKFMY 159
K H+P N+LV+ P ++H + +K + V VVVDP ++N LRPHQREG+ F+Y
Sbjct: 259 KPRHNPNDTNSLVMPRPN--ASHQCM-FNKAGLPVVDVVVDPYIANNLRPHQREGIVFLY 315
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVK 218
ECV G+R+ +G I+ADEMGLGKTLQCI+L+WTLLRQG KP++ +A+IV P SLVK
Sbjct: 316 ECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGCKPVLKRALIVTPGSLVK 375
Query: 219 NWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS 277
NW E KWLG R+ +D D+K+ F+ + P+ +++ISYE
Sbjct: 376 NWKKEFQKWLGSERIKVFTVDQ------DHKVEEFISS----PLYSVMIISYEMLLRSLD 425
Query: 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
+ E L++CDEGHRLKN +T AL L +RR++L+GTPIQNDL E+++L+ FVN
Sbjct: 426 QIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVN 485
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
G+LG+ +RK YE PI+R ++ A+ E+ +R +L + ++RRT +++K+
Sbjct: 486 PGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILRRTQEVINKF 545
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGG-ENTKLGMTALSSITSLKKLCNH 456
LP K E ++ + T LQ ELY L+ S + ++G EN+ L I +LKKLCNH
Sbjct: 546 LPPKKENIIFCQPTALQLELYQKLLSSRVISSCLQGRLENSP----HLICIGALKKLCNH 601
Query: 457 PDLVMDKIQTGA-D--GFENAMNILPTG----YAASYKSGKLLIELSAKLMVLDTMLAVI 509
P L+ ++ D E+ + L G + Y S S KL VL +LA I
Sbjct: 602 PCLLFKALKEKCCDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAI 661
Query: 510 K-MTTDDK--IVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN-KTSN 565
+ +++ ++ +VLVSNYTQTL++ + K GY Y RLDG+ + +R ++V++FN K S
Sbjct: 662 RELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSP 721
Query: 566 EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG 625
FIF+LSSKAGG GLNL+GA+ L+++D DWNPA D QAMARVWRDGQK +YR L+TG
Sbjct: 722 AFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTG 781
Query: 626 SIEEKMMQRQAHKKALSSCVVDCEEDVAR-HFSMSELRSLFQLEENTISDTHDKIKCSRC 684
+IEEK+ QRQ K+ LS VVD + HFS+ ELR+LF L EN+ THD ++C C
Sbjct: 782 TIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSSCVTHDLLECD-C 840
Query: 685 V 685
+
Sbjct: 841 M 841
Score = 37 (18.1 bits), Expect = 8.1e-125, Sum P(2) = 8.1e-125
Identities = 28/116 (24%), Positives = 47/116 (40%)
Query: 1 RRSLAPSQL----SKRSPEDSPG-IKTFPPPVKKEKRSCTSR-KPLGSVDNEDEPNSKLP 54
RRS APSQ+ +K+ PG P ++ E+ + K +G E N+ L
Sbjct: 2 RRSAAPSQVLGNVAKKPRFIPPGKSNALCPKIETEETDQDVKLKEIG----EKHGNASLF 57
Query: 55 MTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKA--LHDPTA 108
++ EN + + + KV L ++ + A KA +H PT+
Sbjct: 58 SEMFSENQSENFTQSVESSG-KVKSTKAWDSTSKCSKLEMKTQSAPKADAMHLPTS 112
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
Identities = 257/603 (42%), Positives = 385/603 (63%)
Query: 104 HDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVT 163
HDP + +AL+ Y+PP + + +K+ VHVV+DP + LRPHQR GVKF+Y+CVT
Sbjct: 241 HDPNSKDALIFYSPPPSQLDE----EGNKV-VHVVLDPYIGRHLRPHQRRGVKFLYDCVT 295
Query: 164 GVRIEDAY-GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCN 222
G ++ Y G I+AD+MGLGKTLQ + L+WTLL+Q P KP I KAIIV PS+LV NW +
Sbjct: 296 GNSNDNGYSGAILADQMGLGKTLQTLALLWTLLKQSPYGKPTIKKAIIVTPSTLVNNWKS 355
Query: 223 EITKWLG-GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHK 281
EI KW G GR+ A + E LN F + + P+L+ISYE R + L
Sbjct: 356 EIQKWFGNGRLIASTLTDSLTKETKANLNDFNTS-----IKPVLIISYEQCRIFSKELET 410
Query: 282 NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGIL 341
GL++CDE HRLKN ++T Q++M ++ R++LL+GTPIQN+L+E++S++ F N L
Sbjct: 411 MSCGLMVCDEAHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCL 470
Query: 342 GTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVK 401
G+ +F+K + PI + ++S S + + + QL +V +IRR S +L KYLP K
Sbjct: 471 GSLADFKKSFIIPINKSRESPNSTSTSEGIRKSI-QLSKLVKPFIIRRKSNILEKYLPPK 529
Query: 402 TEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461
Q++ K++ LQ ELY +++ S++V+ + GG ++ T+LS+IT LKKLCN P L++
Sbjct: 530 RVQIIFCKLSSLQIELYKSILNSNSVKSLLSGG-GSRGSATSLSTITLLKKLCNSPSLLL 588
Query: 462 --DKIQTGADGFENAM-NILPT-GYAA-SYKS-GKLLIELSAKLMVLDTMLAVIKMTTDD 515
+K G + + + NIL Y +Y+ + S KL+ +++++ +K ++
Sbjct: 589 LNNKQDEGGEQQQTEIQNILKKHNYTLENYQEIQEQQDNESGKLLFVESLIKQLK-PMNE 647
Query: 516 KIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT----------SN 565
K+VLVSN+T+TLD+FERL K +RLDG + R +V+ FN + S+
Sbjct: 648 KLVLVSNFTKTLDVFERLCKRLSIDTLRLDGDVKADSRQALVDKFNSSTQNVSSSKSSSS 707
Query: 566 EF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624
++ +F+LS+KAGG G+NLIG N LV++DPDWNPA D QAM R+WR+GQ KP F+YR ST
Sbjct: 708 QYQVFLLSAKAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERIWREGQTKPVFIYRLFST 767
Query: 625 GSIEEKMMQRQAHKKALSSCVVDCE-EDVARHFSMSELRSLFQLEENTISDTHDKIKCSR 683
G+IEEK+ QRQ K+++S+ +VD + D +FS+ +L+ +F ENT SDTHD ++C+
Sbjct: 768 GTIEEKIYQRQLMKESISNSIVDKKFNDNGGNFSLEDLKDIFSYNENTNSDTHDLLQCN- 826
Query: 684 CVN 686
C N
Sbjct: 827 CGN 829
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 1182 (421.1 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 265/596 (44%), Positives = 365/596 (61%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQ-VHVVVDPVLSNILRPHQREGVKFMY 159
K HDP PN+LV+ P + H + +K+ V VV+DP L LRPHQ+EG+ F+Y
Sbjct: 252 KPRHDPYTPNSLVMPRPDK--NHQWV-FNKNCFPLVDVVIDPYLVYHLRPHQKEGIIFLY 308
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVK 218
ECV G+R+ G I+ADEMGLGKTLQCI+L+WTL QGP KP+I K +IV P SLV
Sbjct: 309 ECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVN 368
Query: 219 NWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS 277
NW E KWLG R+ +D D+K+ F+++ +L+ISYE
Sbjct: 369 NWKKEFQKWLGSERIKIFTVDQ------DHKVEEFIKSI----FYSVLIISYEMLLRSLD 418
Query: 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
+ + L++CDEGHRLKN +T AL+ L ++R++L+GTPIQNDL E+F+L+ FVN
Sbjct: 419 QIKNIKFDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVN 478
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
GILG+ +RK YE PI+ ++ AS+ E+ R +L + ++RRT +++KY
Sbjct: 479 PGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKY 538
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGG-ENTKLGMTALSSITSLKKLCNH 456
LP K E VV + LQ ELY L+ S VR ++G EN+ L I +LKKLCNH
Sbjct: 539 LPPKIENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSP----HLICIGALKKLCNH 594
Query: 457 PDLVMDKI---QTGADGFENAMNILPTG----YAASYKSGKLLIELSAKLMVLDTMLAVI 509
P L+ + I + + +N L G + A Y + S KL VL +LAVI
Sbjct: 595 PCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVI 654
Query: 510 -KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEF 567
++ +K+VLVSNYTQTL++ + + K GY Y RLDG I +R ++V+ FN S+ F
Sbjct: 655 HELRPTEKVVLVSNYTQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFF 714
Query: 568 IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSI 627
IF+LSSKAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK P +YR L+TG+I
Sbjct: 715 IFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTI 774
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDVARH--FSMSELRSLFQLEENTISDTHDKIKC 681
EEK+ QRQ K+ L VVD + + H FS+ EL++LF L E++ THD + C
Sbjct: 775 EEKIYQRQISKQGLCGAVVDLTK-TSEHIQFSVEELKNLFTLHESSDCVTHDLLDC 829
Score = 40 (19.1 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPP 25
RRS APSQL S + P K PP
Sbjct: 2 RRSAAPSQLQGNSFK-KP--KFIPP 23
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 684 (245.8 bits), Expect = 1.0e-121, Sum P(2) = 1.0e-121
Identities = 153/398 (38%), Positives = 241/398 (60%)
Query: 71 LAKPFKVPILNYTGGG--YSTKALGV--RREGARKALHD--PTAPNALVLYTPPQ--LSA 122
L PFK P+ + Y K LGV RR G + + P + + +
Sbjct: 50 LFHPFKNPLPGFVSDKTLYLKKTLGVKVRRTGWINLMKNSIPRRSDETEEQEKIEEVIKK 109
Query: 123 HDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLG 182
H+ L + KD+ + VDP+L+ LR HQREGV+F++EC+ ++ + GCI+AD+MGLG
Sbjct: 110 HEPLILYKDEND-KIEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLG 168
Query: 183 KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
KTLQ IT+++TLL+QG K + + +I+ P+SL+ NW +EI+KW+ R ++ +K
Sbjct: 169 KTLQSITVLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAK 228
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
+I +KL F Y + + +L+ SYE FR + L K+ + +++CDE HRLKN +++T
Sbjct: 229 EKIVSKLEGFK--YDIQ--STVLICSYECFRINNEFLDKSSIDMIICDEAHRLKNDKTKT 284
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
Y ++ L AK+R+LLSGTPIQNDL E+++L+ N + FRK++ PIL G+D
Sbjct: 285 YTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKD 344
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
A++ E+ A+ERL +L I N+ ++RRT+ LLSK LPVK + IK+ +Q+ LY +
Sbjct: 345 ATEKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFL 404
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K ++ +K +NT + L +I L+K+CNHP L+
Sbjct: 405 KD---KKILKN-DNTNNKVNVLINIKKLEKICNHPLLL 438
Score = 552 (199.4 bits), Expect = 1.0e-121, Sum P(2) = 1.0e-121
Identities = 103/194 (53%), Positives = 139/194 (71%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K ++L +L IK T+DK+V+VSNYTQTLD E L K YK+VRLDG + IKKR K
Sbjct: 609 SCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHK 668
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
V+ F +++ FIF+LSSK+GGCG+NLI +NRL++ DPDWNPAND QA+ARVWR+GQKK
Sbjct: 669 VINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKI 728
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDT 675
C++YR TG+I+EK+ QRQ K LS+ +V S ++ LF + NT+S+T
Sbjct: 729 CYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDENVKKLFNYKMNTVSET 788
Query: 676 HDKIKCSRC-VNGI 688
HD I+C+RC +NG+
Sbjct: 789 HDNIECNRCNLNGV 802
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 684 (245.8 bits), Expect = 1.0e-121, Sum P(2) = 1.0e-121
Identities = 153/398 (38%), Positives = 241/398 (60%)
Query: 71 LAKPFKVPILNYTGGG--YSTKALGV--RREGARKALHD--PTAPNALVLYTPPQ--LSA 122
L PFK P+ + Y K LGV RR G + + P + + +
Sbjct: 50 LFHPFKNPLPGFVSDKTLYLKKTLGVKVRRTGWINLMKNSIPRRSDETEEQEKIEEVIKK 109
Query: 123 HDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLG 182
H+ L + KD+ + VDP+L+ LR HQREGV+F++EC+ ++ + GCI+AD+MGLG
Sbjct: 110 HEPLILYKDEND-KIEVDPILAQYLREHQREGVQFVFECLMNIKDDKISGCILADDMGLG 168
Query: 183 KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
KTLQ IT+++TLL+QG K + + +I+ P+SL+ NW +EI+KW+ R ++ +K
Sbjct: 169 KTLQSITVLYTLLKQGFHKKCAVRRCLILCPASLINNWNDEISKWIPNRCNVTCVNDNAK 228
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
+I +KL F Y + + +L+ SYE FR + L K+ + +++CDE HRLKN +++T
Sbjct: 229 EKIVSKLEGFK--YDIQ--STVLICSYECFRINNEFLDKSSIDMIICDEAHRLKNDKTKT 284
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
Y ++ L AK+R+LLSGTPIQNDL E+++L+ N + FRK++ PIL G+D
Sbjct: 285 YTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRKKFANPILIGRDKD 344
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
A++ E+ A+ERL +L I N+ ++RRT+ LLSK LPVK + IK+ +Q+ LY +
Sbjct: 345 ATEKEQEIASERLTELSNITNKFILRRTNNLLSKVLPVKYLINIFIKLNPIQEALYVLFL 404
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K ++ +K +NT + L +I L+K+CNHP L+
Sbjct: 405 KD---KKILKN-DNTNNKVNVLINIKKLEKICNHPLLL 438
Score = 552 (199.4 bits), Expect = 1.0e-121, Sum P(2) = 1.0e-121
Identities = 103/194 (53%), Positives = 139/194 (71%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K ++L +L IK T+DK+V+VSNYTQTLD E L K YK+VRLDG + IKKR K
Sbjct: 609 SCKFLLLHFLLKNIKQNTNDKVVIVSNYTQTLDYMEILCKENMYKFVRLDGGINIKKRHK 668
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
V+ F +++ FIF+LSSK+GGCG+NLI +NRL++ DPDWNPAND QA+ARVWR+GQKK
Sbjct: 669 VINDFTHSADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKI 728
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDT 675
C++YR TG+I+EK+ QRQ K LS+ +V S ++ LF + NT+S+T
Sbjct: 729 CYIYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTNLSKDQMSDENVKKLFNYKMNTVSET 788
Query: 676 HDKIKCSRC-VNGI 688
HD I+C+RC +NG+
Sbjct: 789 HDNIECNRCNLNGV 802
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
Identities = 274/619 (44%), Positives = 376/619 (60%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQ-VHVVVDPVLSNILRPHQREGVKFMY 159
K HDP APN+LV+ P + H + +K+ V VV+DP L LRPHQREG+ F+Y
Sbjct: 148 KPRHDPYAPNSLVMLRPD--NNHQWM-FNKNHFPIVDVVIDPHLVYHLRPHQREGIIFLY 204
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA-KPLIDKAIIVAPSSLVK 218
ECV G+R+ G I+ADEMGLGKTLQCI+L+WTL QGP KP+I K +IV P SLV
Sbjct: 205 ECVMGMRVNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKTLIVTPGSLVN 264
Query: 219 NWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHAS 277
NW E KWLG R+ +D D+K+ F ++ P+ +L+ISYE
Sbjct: 265 NWRKEFQKWLGSERIKIFTVDP------DHKVEEFTKS----PLYSVLIISYEMLLRSLD 314
Query: 278 VLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
+ + L++CDEGHRLKN +T AL L ++R++L+GTP+QNDL E+FSL+ FVN
Sbjct: 315 QIKNIKFDLLICDEGHRLKNSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFFSLIDFVN 374
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
GILG+ +RK YE PI+ + AS E+ R +L + ++RRT +++KY
Sbjct: 375 PGILGSLSCYRKIYEEPIITSRQPSASQEEKELGERRACELTCLTGLFILRRTQEVINKY 434
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG-GENTKLGMTALSSITSLKKLCNH 456
LP K E VV + LQ ELY L+ S AVR ++G EN+ + L I +LKKLCNH
Sbjct: 435 LPPKIENVVFCRPGALQIELYRKLLNSQAVRFCLQGLMENS----SHLICIGALKKLCNH 490
Query: 457 PDLVMDKIQ----TGA--DGFENAM--NILPTGYAASYKSGKLLIELSAKLMVLDTMLAV 508
P L+ ++ + A + E + ++L + Y E S KL VL +LAV
Sbjct: 491 PCLLFSSVKEKECSSAWDENEERRLYEDLLKV-FPPDYNPLMFAEEESGKLQVLSKLLAV 549
Query: 509 I-KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN-KTSNE 566
I ++ +K+VLVSNYTQTL++ + + + GY RLDG I +R ++V+ FN K S++
Sbjct: 550 IHELRPAEKVVLVSNYTQTLNILQEVCRRHGYGCTRLDGQTPISQRQQIVDGFNSKYSSD 609
Query: 567 FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626
FIF+LSSKAGG GLNLIG + L+++D DWNPA D QAM+RVWRDGQK P +YR L+TG+
Sbjct: 610 FIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGT 669
Query: 627 IEEKMMQRQAHKKALSSCVVDCEEDVARH--FSMSELRSLFQLEENTISDTHDKIKCSRC 684
IEEK+ QRQ K+ LS VVD + + H FS+ EL++LF L EN+ THD + C C
Sbjct: 670 IEEKIYQRQISKQDLSGAVVDLTK-TSDHIQFSVEELKNLFTLHENSHCVTHDLLDCE-C 727
Query: 685 VN----GIQVKPPPLESDC 699
G ++ PL C
Sbjct: 728 TGENHPGDSLEKFPLSRTC 746
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 1150 (409.9 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 260/586 (44%), Positives = 360/586 (61%)
Query: 104 HDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVT 163
HDP P AL++ P SA K K V VVVDP+L+ LRPHQREGVKF+YECV
Sbjct: 260 HDPKQPGALIMKRPG--SA------PKGKRIVDVVVDPILAKHLRPHQREGVKFLYECVM 311
Query: 164 GVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL--AKPLIDKAIIVAPSSLVKNWC 221
G+R + G I+AD+MGLGKTLQ ITL+WTLL+Q P+ A P+I KA+IV P +L+ NW
Sbjct: 312 GMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIYEAAPVIKKALIVCPVTLINNWR 371
Query: 222 NEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLH 280
E KWLG R+ D K +L F T G+ I+++ YE RS L
Sbjct: 372 REFRKWLGNERIGVFVFDDKRK-----RLTDF--TMGK--AYSIMIVGYEKLRSVQEGLA 422
Query: 281 K-NEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQG 339
+ N V +V+ DEGHRLK ++++ QA+ L A +R++LSGTPIQNDL E+F+ V VN G
Sbjct: 423 RGNGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPG 482
Query: 340 ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLP 399
+LG+ + F K++E PI+R + A++ + K R E+L + ++ ++RRT+ +L+ YLP
Sbjct: 483 VLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADILADYLP 542
Query: 400 VKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
KTE V+ K T+ Q ++Y N++ S + + E+ AL IT LKKLCN P L
Sbjct: 543 PKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSES------ALQLITILKKLCNSPSL 596
Query: 460 VM--DKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKI 517
+ D + ++ ++ LP + SAK+ VLD +L ++ +T +K+
Sbjct: 597 LSLKDANEKPSETIAAILSSLPPNLLRHFSPS-----CSAKIRVLDQLLHYLRTSTSEKV 651
Query: 518 VLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK--TSNEFIFMLSSKA 575
VLVSNYT TLDL L ++RLDGS +KR +VE FN+ S F F+LS+KA
Sbjct: 652 VLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKA 711
Query: 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQ 635
GG GLNLIGA+RLV+FD DWNPA D QAMAR+ RDGQK C +YR L GS+EEK+ QRQ
Sbjct: 712 GGTGLNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEKIWQRQ 771
Query: 636 AHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKC 681
K L+ V++ ++ VA+ FS ELR LF+L+ + THD + C
Sbjct: 772 VTKIGLADSVMEHKDSVAQ-FSRDELRDLFRLDVVSKCQTHDLLAC 816
Score = 41 (19.5 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 55 MTKEEMSEHENLIRQILAKPFKVPIL 80
MTK E +L R + +K VP+L
Sbjct: 171 MTKTEAPTPPSLTRPLPSKKTSVPVL 196
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 258/610 (42%), Positives = 375/610 (61%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIE-DAYGCIMADEMGLGKTLQCITLMW 192
++H VVDP+LS LRPHQREGV+FM++C+ G R GCI+AD+MGLGK++Q IT++W
Sbjct: 270 RIHCVVDPILSQKLRPHQREGVQFMFDCLLGFRGGFKGNGCILADDMGLGKSIQAITILW 329
Query: 193 TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSF 252
TLL+QGP + KA+IVAP +LV NW E+ KWLG V + I +K KL
Sbjct: 330 TLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDGVNTVAIGESTKTG-RAKLTEL 388
Query: 253 MQTYGRRPVNPILVISYETFRSHASVLHK-NEVGLVLCDEGHRLKNCESQTYQALMGLKA 311
+G+ V L+ISY+ R + + K +GLV+CDEGHRLKN E +T +A+ +
Sbjct: 389 --EFGKADV---LIISYDQLRIYCEDICKITSIGLVICDEGHRLKNAEIKTTKAVSMIPT 443
Query: 312 KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKA 371
RRV+LSGTPIQNDL E++++V+FVN G+L F+ Y+ PI+ ++ ASD E+
Sbjct: 444 ARRVILSGTPIQNDLTEFYAMVNFVNPGVLKNVATFKNVYDAPIVASRNPDASDEEKEIG 503
Query: 372 NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS--DAVRR 429
+R +L + ++ ++RRT+ + ++YLP K E V+ K+T LQ +Y +LIK D+
Sbjct: 504 RQRSLELSRLTSQFILRRTAFVNTQYLPPKVEYVIFCKLTPLQLSIYKHLIKEAKDSAFA 563
Query: 430 TMKGGENTKLGMTALSSITSLKKLCNHPDLVM--DKIQTGADGFENAMNILPTGYAASYK 487
+ G AL IT+LKKL N +LV DK +T D + + + P +
Sbjct: 564 STTG---------ALPLITTLKKLSNCAELVYTPDK-ET--DVGTSILKLFPK----EWN 607
Query: 488 SGKLLIELSAKLMVLDTMLAVIKMT-TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
+ S+KL+ +D +LA I+ + + DK V++SNYTQTL++ + K RGY Y +LDG
Sbjct: 608 PKVFQPQYSSKLLFVDRLLANIRNSKSGDKTVIISNYTQTLEVLATMCKTRGYAYFQLDG 667
Query: 547 SMTIKKRAKVVETFNKTSN-EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
S KR ++V +N + EF+F+LSSKAGG GLNLIG N LV+FD DWNPAND Q+MA
Sbjct: 668 STANAKRQQLVNLYNDPARPEFVFLLSSKAGGVGLNLIGGNHLVLFDADWNPANDAQSMA 727
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLF 665
RVWR+GQKK +YR +TG+IEEK+ QRQ K+ALS+ + + + D + F +L+ +F
Sbjct: 728 RVWREGQKKIVSIYRTFTTGTIEEKIFQRQLTKQALSTSITEGDSDNSPSFDSKDLKDIF 787
Query: 666 QLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTD--DLSCWHHVTEKRWLVDP-ILKH 722
L E+T+ DTHD + C +C + K P + D +L+ WHH + + D +
Sbjct: 788 TLREDTLCDTHDMLSC-KCAPTVGGKIPKHKRDTMSISELNSWHHFHQMEKIKDQKVASA 846
Query: 723 CWGAGVSFVF 732
C +FVF
Sbjct: 847 CQDIA-TFVF 855
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 165/429 (38%), Positives = 246/429 (57%)
Query: 73 KPFKVPILN--YTGGGYSTKALGVRRE-GARKALHDPTAPNALVLYTPPQLSAHDLLKID 129
K K PIL + G+ G+ + K LH+P APN+LVL+TP ++ +
Sbjct: 215 KEKKAPILAAAHRPKGFQVPVKGLEKAVRLSKPLHNPLAPNSLVLFTPVDITGEN----- 269
Query: 130 KDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIE-DAYGCIMADEMGLGKTLQCI 188
++H VVDP+LS LRPHQREGV+FM++C+ G R GCI+AD+MGLGK++Q I
Sbjct: 270 ----RIHCVVDPILSQKLRPHQREGVQFMFDCLLGFRGGFKGNGCILADDMGLGKSIQAI 325
Query: 189 TLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK 248
T++WTLL+QGP + KA+IVAP +LV NW E+ KWLG V + I +K K
Sbjct: 326 TILWTLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGDGVNTVAIGESTKTG-RAK 384
Query: 249 LNSFMQTYGRRPVNPILVISYETFRSHASVLHK-NEVGLVLCDEGHRLKNCESQTYQALM 307
L +G+ V L+ISY+ R + + K +GLV+CDEGHRLKN E +T +A+
Sbjct: 385 LTEL--EFGKADV---LIISYDQLRIYCEDICKITSIGLVICDEGHRLKNAEIKTTKAVS 439
Query: 308 GLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAE 367
+ RRV+LSGTPIQNDL E++++V+FVN G+L F+ Y+ PI+ ++ ASD E
Sbjct: 440 MIPTARRVILSGTPIQNDLTEFYAMVNFVNPGVLKNVATFKNVYDAPIVASRNPDASDEE 499
Query: 368 RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS--D 425
+ +R +L + ++ ++RRT+ + ++YLP K E V+ K+T LQ +Y +LIK D
Sbjct: 500 KEIGRQRSLELSRLTSQFILRRTAFVNTQYLPPKVEYVIFCKLTPLQLSIYKHLIKEAKD 559
Query: 426 AVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAAS 485
+ + G L +T L +++ +L PD D + F N P +
Sbjct: 560 SAFASTTGA--LPL-ITTLKKLSNCAELVYTPDKETDVGTSILKLFPKEWN--PKVFQPQ 614
Query: 486 YKSGKLLIE 494
Y S L ++
Sbjct: 615 YSSKLLFVD 623
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 615 (221.5 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 153/425 (36%), Positives = 230/425 (54%)
Query: 42 SVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARK 101
S+ N D K PM K + NL I P+++ L+ G ST R K
Sbjct: 96 SIKNSD---GK-PMGKRVFTATPNLDDVISVGPYELE-LDEKVGSNSTSQTVTRVTHQFK 150
Query: 102 ALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYEC 161
+ PTA + LY A L K K V V +DP L+ +LRPHQ EGVKFMYEC
Sbjct: 151 KVAPPTASSRKPLYDDCA-DAIALPPPPKAKDYVKVNIDPHLAKVLRPHQVEGVKFMYEC 209
Query: 162 VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP--LIDKAIIVAPSSLVKN 219
+ G R +GC++ADEMGLGKTL IT +WTLL+Q P + +++K ++V P +L+ N
Sbjct: 210 LMGYRGFGGHGCLLADEMGLGKTLMTITTIWTLLKQNPFMEKGAVVNKVLVVCPVTLISN 269
Query: 220 WCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV 278
W E KWLG ++ L ++ E + LN +G+ V +LV++YE +H
Sbjct: 270 WRQEFRKWLGANKLNVLTLNNPMSNEKQDILN-----FGKLNVYQVLVVNYEKLVAHFDE 324
Query: 279 LHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQ 338
L + L++CDEGHRLKN ++ L+ L ++++L+GTPIQN+L+E+ +L+ F+N
Sbjct: 325 LSAVKFDLLVCDEGHRLKNSANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNP 384
Query: 339 GILGTAQEFRKQYETPILRGQDSCASDAERTKANERL-EQLIGIVNRCLIRRTSALLSKY 397
G+L + F++ + TPI R +D D E K E + +QLI + ++RRT A+L+ Y
Sbjct: 385 GVLPELKLFQRNFITPISRARDINCFDPEVKKRGEEISQQLIELTQSFILRRTQAILANY 444
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457
L KT+ ++ + T LQ +L+ D + K + A + I KK+CN P
Sbjct: 445 LTQKTDILLFVPPTSLQLKLF------DYITNLKKFNQ-----FEAFTMINLFKKICNSP 493
Query: 458 DLVMD 462
L+ D
Sbjct: 494 SLLAD 498
Score = 445 (161.7 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 92/223 (41%), Positives = 139/223 (62%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ +L +L I + +KIVL+SNYT+TLDL E++ + + RLDGS R+K
Sbjct: 516 SGKINILVPLLLEIA-SLGEKIVLISNYTKTLDLLEQVLRKVSLTFSRLDGSTPNNVRSK 574
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V FN + +F+LSSK+GG G+NL+GA+RL++FD DWNPA D Q+M+R+ RDGQ KP
Sbjct: 575 LVNQFNTNPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSMSRIHRDGQLKP 634
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH-FSMSELRSLFQLEENTISD 674
CF+YR +TG I+EK+ QRQ K LSS +D + F +L+++F+++ +TIS+
Sbjct: 635 CFIYRLFTTGCIDEKIFQRQLVKNKLSSKFLDNDATSKSDVFDNDDLKNIFEIDTSTISN 694
Query: 675 THDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVD 717
THD ++C +G + P +E W E + +D
Sbjct: 695 THDLLECVCEGDGSMLSQPTIEESEPPPKQAWVTALELKKKID 737
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 841 (301.1 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 215/553 (38%), Positives = 321/553 (58%)
Query: 169 DAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK---------PLID---KAIIVAPSSL 216
D GC++AD+MGLGKTL ITL+WTL+RQ P A PL K ++V P +L
Sbjct: 338 DISGCLLADDMGLGKTLMSITLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTL 397
Query: 217 VKNWCNEITKWLG-GRVAALPIDGGSKAEIDNK-LNSFMQTYGRRPVNPILVISYETFRS 274
+ NW E KWL R+ L + + ++D + +F++ +R +L+I YE S
Sbjct: 398 IGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFLKV--QRTYQ-VLIIGYEKLLS 454
Query: 275 HASVLHKNE--VGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSL 332
+ L KN+ + +++CDEGHRLKN S+ L L +R++LL+GTPIQNDL E+F++
Sbjct: 455 VSEELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTI 514
Query: 333 VHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSA 392
+ F+N GILG+ F++++ PI R +D+ + NE L + ++ +I T
Sbjct: 515 IDFINPGILGSFASFKRRFIIPITRARDTA------NRYNEELLEKGEERSKEMIEITKR 568
Query: 393 LLSKYLPVKTEQVVCIKMTD--LQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS---- 446
+ + E+ + K TD L + Y+ I A + ++G G SS
Sbjct: 569 FILRRTNAILEKYLPPK-TDIILFCKPYSQQIL--AFKDILQGAR-LDFGQLTFSSSLGL 624
Query: 447 ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTML 506
IT LKK+CN P LV G+D + + +I T SY S L S KL VL T+L
Sbjct: 625 ITLLKKVCNSPGLV------GSDPYYKS-HIKDTQSQDSY-SRSLN---SGKLKVLMTLL 673
Query: 507 AVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNE 566
I+ T +K+V+VSNYTQTLD+ E L + G + RLDGS+ K+R +V +FN+
Sbjct: 674 EGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSIPAKQRDSIVTSFNRNPAI 733
Query: 567 FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626
F F+LS+K+GG GLNL+GA+RL++FD DWNP+ D QAM+R+ RDGQKKPCF+YR ++TG
Sbjct: 734 FGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGC 793
Query: 627 IEEKMMQRQAHKKALSSCVV-DCE---EDVARH--FSMSELRSLFQLEENTISDTHDKIK 680
I+EK++QRQ K +LS + D E ++ + F+ +L+ LF + +T S+THD I
Sbjct: 794 IDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNTHDLI- 852
Query: 681 CSRCVNGIQVKPP 693
CS G +++ P
Sbjct: 853 CSCDGLGEEIEYP 865
Score = 124 (48.7 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGV 165
+V V+VDP+L LRPHQREGVKFMY+C+ G+
Sbjct: 283 EVDVIVDPLLGKFLRPHQREGVKFMYDCLMGL 314
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 519 (187.8 bits), Expect = 1.2e-82, Sum P(2) = 1.2e-82
Identities = 128/344 (37%), Positives = 197/344 (57%)
Query: 368 RTKANERLEQLIGIVNRCLIRRTSALLS-KYLPVKTEQVVCIKMTDLQKELYTNLIKSDA 426
R ++R EQL +++ C++RRT+A + K+LP K E ++ + +QK +++ +
Sbjct: 401 RKMCSDRPEQLNELIDECMLRRTAADVDLKHLPEKHEYILFCAASPIQKHVHSEICDY-- 458
Query: 427 VRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGAD---GFENAMNILPTGYA 483
M G ALS I ++L NHP L++D ++ + +++ +L A
Sbjct: 459 ----MTGD--------ALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGA 506
Query: 484 ASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVR 543
+ G ++ S KL L M+ ++ + V+VSNY +TLD+ ++L + +K +R
Sbjct: 507 HMPRGG---VKESGKLTALVDMIKCFRLL-QECTVIVSNYIETLDMIQQLCEYLNFKVLR 562
Query: 544 LDGSMTIKKRAKVVETFNKTSNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
LDG + R K+V TFN + IF+LS+KAGG GLNLIGA+RLV+FD DWNPAND Q
Sbjct: 563 LDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQ 622
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE--DVARHFSMSE 660
AMAR+WRDGQ +PC +YR ++TG+IEEKM+QRQ K L CV+D E D F+ +
Sbjct: 623 AMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGLG-CVIDAIEVGDTIATFTDED 681
Query: 661 LRSLFQLEEN-TISDTHDKIKCSRCVNGIQVKPPPLESDCTDDL 703
L+ +F + T +THD +C C ++ E D DD+
Sbjct: 682 LKDIFTFTGSATECNTHDLCECP-CDGCGMLENEMDEEDDGDDV 724
Score = 368 (134.6 bits), Expect = 1.2e-82, Sum P(2) = 1.2e-82
Identities = 95/268 (35%), Positives = 145/268 (54%)
Query: 117 PPQ-LSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVT-GV-RIEDAYGC 173
PP L+ D+L D+ K V VD + LRPHQ+ G++F+++ + G + G
Sbjct: 178 PPFILNEQDIL--DR-KTTSAVTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGA 234
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+AD+MGLGK+LQ + W LL+ A+ L + +I+ PSSLV NW E KW R+
Sbjct: 235 ILADDMGLGKSLQTMAATWALLKGSKTAQQLANSCLIIVPSSLVNNWKAEFDKWW--RLM 292
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
P A N + ++ T + P LVISY+ + H L +++CDEGH
Sbjct: 293 RFPAVIALTA---NDITTYQSTI---KLMPYLVISYDLAQRHVEKLKIIRFDVMVCDEGH 346
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY-E 352
+LKN + + + L+ L+ RR++L+GTP+QND E++SL+ FV + G+ EFRK +
Sbjct: 347 KLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEFRKMCSD 406
Query: 353 TPILRGQ--DSCASDAERTKANERLEQL 378
P + D C RT A+ L+ L
Sbjct: 407 RPEQLNELIDECM--LRRTAADVDLKHL 432
>POMBASE|SPAC22F3.03c [details] [associations]
symbol:rdh54 "ATP-dependent DNA helicase Rdh54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC22F3.03c GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0004003
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007131 KO:K10877 EMBL:AY293737 PIR:S62418
PIR:T38188 RefSeq:NP_593038.2 ProteinModelPortal:Q09772
IntAct:Q09772 STRING:Q09772 EnsemblFungi:SPAC22F3.03c.1
GeneID:2541798 KEGG:spo:SPAC22F3.03c OMA:NTENTRT OrthoDB:EOG4CVKG1
NextBio:20802886 Uniprot:Q09772
Length = 811
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 215/609 (35%), Positives = 325/609 (53%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYE 160
K HDPT ALV+ P K + V VV+DP LS L HQREGV F+Y+
Sbjct: 168 KPRHDPTVLGALVMSRP---------KTWDPRTHVDVVIDPFLSKHLYSHQREGVSFLYD 218
Query: 161 CVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK--PLIDKAIIVAPSSLVK 218
C+ G+ + Y I+ADEMGLGKTLQ IT++WTLL+Q A I+ A++VAP +L+K
Sbjct: 219 CLLGMEGKCGYSAILADEMGLGKTLQTITVVWTLLKQSYYANRSSTINNAMVVAPVTLLK 278
Query: 219 NWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV 278
NW NE WLG + I AE + S +TY I++ YET ++
Sbjct: 279 NWENEFYNWLGHERIHVYI--ARCAEDFQEFTS-NKTYS------IIITGYETVCTYLRN 329
Query: 279 LHKN-EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVN 337
++ L++CDE HRLK+ SQT+ L LK ++R+LL+GTP+QNDL EYFS+V+F+
Sbjct: 330 YGCGIDIDLLICDEAHRLKSMSSQTWITLNKLKTRKRLLLTGTPLQNDLSEYFSMVNFII 389
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
G LGT F+ QYE PILR + AS + + RL++L + +RR + +L+K+
Sbjct: 390 PGSLGTPNSFKAQYERPILRSRSMNASSRDISLGAARLQRLFEFTSNFTLRRKANILAKH 449
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457
LP +T+ V+ IK T Q+ +Y +++ K + K G L +T L K+CN
Sbjct: 450 LPPRTDIVLFIKPTHQQENVYGHVLDG------FKSSVDQK-GYY-LKILTRLSKICNST 501
Query: 458 DLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDT--MLAVIKMTTDD 515
L+ ++ + ++ S KL I L+A L AVI +
Sbjct: 502 ILLRNEKENFLSTELQDKHVFEQENML-LSSSKLQI-LAALLKSFQRGCQKAVIVSQYKE 559
Query: 516 KIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575
+ L+ + L + R KL G + + + +F + S + +LSSKA
Sbjct: 560 TLELIELFLSILHV--RFCKLLGSTPFS-ERDLIVHNFN--TSSFKEFS---VLLLSSKA 611
Query: 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQ 635
GGCGLNL G+ RL++++P WNPA D QA++R++R GQK+P +Y FLS+G ++E++ RQ
Sbjct: 612 GGCGLNLTGSTRLIIYEPSWNPAQDLQALSRIYRSGQKRPVCIYTFLSSGMLDERIFIRQ 671
Query: 636 AHKKALSSCVVDCEEDVARHFSMSE-LRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPP 694
K+ LSS +D + ++F E +++LF + T++ S ++ + K P
Sbjct: 672 NTKQGLSSSFIDSDASQKKNFFTGEDIKTLFSYSKTETCLTYELAFDSDEIDSLTKKKDP 731
Query: 695 LES-DCTDD 702
L D T D
Sbjct: 732 LTKIDHTID 740
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 413 (150.4 bits), Expect = 3.8e-65, Sum P(3) = 3.8e-65
Identities = 123/408 (30%), Positives = 204/408 (50%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 1494 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 1547
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1548 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1604
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G ++ A + + S+M + +++I Y
Sbjct: 1605 VCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1663
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ ++++RR
Sbjct: 1664 EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRR 1723
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1724 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1781
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTM 431
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V +
Sbjct: 1782 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNSS 1841
Query: 432 KGGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
+GG K G L ++ HP L +D I G+ E++M+
Sbjct: 1842 EGGRG-KAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1888
Score = 341 (125.1 bits), Expect = 3.8e-65, Sum P(3) = 3.8e-65
Identities = 78/197 (39%), Positives = 121/197 (61%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 2013 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 2071
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2072 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2131
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2132 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2190
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2191 FEPDLLDDPNSEKKKKR 2207
Score = 53 (23.7 bits), Expect = 3.8e-65, Sum P(3) = 3.8e-65
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 4 LAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKP----LGSVDNEDE--PNSKLPMTK 57
L P LS SP + P K SC + KP LG N++E S++P+
Sbjct: 582 LTPVSLSI-SPIKGADCQEVPQDKDSYKSSCLNPKPENCELGQEKNDNEHLAKSEVPLLS 640
Query: 58 EE 59
EE
Sbjct: 641 EE 642
Score = 50 (22.7 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL-LIELSAKLMVLDTMLAVIKMTT 513
N+P + + ++ A N + P Y ++E S K+++L +L + +
Sbjct: 1956 NNPSVSLKLEESKATSSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAE-EI 2014
Query: 514 DDKIVLVSNYTQTLDLFERLSKL 536
DK+++ S +LDL E +L
Sbjct: 2015 GDKVLVFSQSLISLDLIEDFLEL 2037
Score = 37 (18.1 bits), Expect = 6.5e-25, Sum P(2) = 6.5e-25
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 453 LCNHPDLVMDKIQTGADGFENAMNIL 478
+C HP+ ++D + FEN +L
Sbjct: 261 IC-HPEPLLDLVTACNSVFENLEQLL 285
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 659 (237.0 bits), Expect = 3.9e-65, Sum P(2) = 3.9e-65
Identities = 173/527 (32%), Positives = 281/527 (53%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAK-P 203
+Q+ GV++++E + + A G I+ DEMGLGKT+Q I L ++ +R +G +
Sbjct: 510 YQQTGVRWLWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFE 564
Query: 204 LIDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ +IV P++++ W E T W RVA L G + + + +G
Sbjct: 565 GLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCHG----- 619
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
IL+ SY R + + + V+ DEGH+++N + A + R++LSG+P+
Sbjct: 620 -ILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 678
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +
Sbjct: 679 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 738
Query: 383 NRCLIRR--TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR + +S LP K EQV+ ++TD Q ++Y N + S V R + G
Sbjct: 739 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGE------ 792
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
M S + +L+K+CNHPDL + G +N LP + G + S K++
Sbjct: 793 MQIFSGLIALRKICNHPDLF-------SGGPKNLKG-LPDDELEEDQFGYW--KRSGKMI 842
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
V++++L + +++L S Q LD+ E + + Y Y+++DG+ TI R ++ +
Sbjct: 843 VVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRY 901
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N+ ++ F+F+L+++ GG G+NL GANR+V++DPDWNP+ D QA R WR GQKK VYR
Sbjct: 902 NEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 961
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L
Sbjct: 962 LLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTL 1007
Score = 46 (21.3 bits), Expect = 3.9e-65, Sum P(2) = 3.9e-65
Identities = 18/87 (20%), Positives = 38/87 (43%)
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPN 110
+++P K+E + ++ + A F+ + + + K G + ARKA T P
Sbjct: 250 TQIPQ-KQEKKPRKIMLNE--ASGFEKYLADQAKLSFERKKQGCNKRAARKAPAPVTPPA 306
Query: 111 ALVLYTPPQLSAHDLLKIDKDKIQVHV 137
+ P A L K +++++ H+
Sbjct: 307 PVQNKNKPNKKARVLSK-KEERLKKHI 332
Score = 39 (18.8 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 39 PLGSVDNEDEPNSK---LPMTKEEMSEH 63
P V N+++PN K L +E + +H
Sbjct: 304 PPAPVQNKNKPNKKARVLSKKEERLKKH 331
Score = 39 (18.8 bits), Expect = 2.1e-64, Sum P(2) = 2.1e-64
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 29 KEKRSCTS-RKPLGSVDNEDEPNSKLPMTKEEMSEHENL 66
K +R S +P D+E E + P +EE E + +
Sbjct: 350 KARRPWESDMRPEAEGDSEGEESEYFPTEEEEEEEDDEV 388
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 427 (155.4 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 136/473 (28%), Positives = 223/473 (47%)
Query: 11 KRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQI 70
K+S D G F P K++K+ K S +++ + + K + H IR+I
Sbjct: 334 KKSESDK-GSSDFEPEEKQKKKGRKRIKKTSSGESDGDGDDDKQKNKRK---H---IRKI 386
Query: 71 LAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDL-LKID 129
+ K L+ T TK + RK + D + + ++L L D
Sbjct: 387 I----KTKDLDLT-----TKEAAKEEDDRRKRIEDRQKLYNRIFVKSESVEINELVLDFD 437
Query: 130 KDKIQVHVVVDPVLSNILRPHQREGVKFMYE-CVTGVRIED---AYGCIMADEMGLGKTL 185
++ + + VD L L+PHQ GVKFM++ C ++ GCI+A MGLGKTL
Sbjct: 438 EESKKALLQVDKGLLKKLKPHQVAGVKFMWDACFETLKESQEKPGSGCILAHCMGLGKTL 497
Query: 186 QCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWL--GGR--VAALPIDG-G 240
Q +TL TLL + +D+ +I++P S V NW E T W+ R + I
Sbjct: 498 QVVTLSHTLLVN--TRRTGVDRVLIISPLSTVNNWAREFTSWMKFANRNDIEVYDISRYK 555
Query: 241 SKAEIDNKLNSFMQTYGRRPVNPILVISYETFR----SHASVLHKNE----------VG- 285
K KLN + G + ++ Y+ +R A L K + G
Sbjct: 556 DKPTRIFKLNEWFNEGG------VCILGYDMYRILANEKAKGLRKKQREQLMQALVDPGP 609
Query: 286 -LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTA 344
LV+CDEGH LKN ++ +A+ ++ KRR++L+GTP+QN+L EY+ ++ FV +LGT
Sbjct: 610 DLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTY 669
Query: 345 QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ 404
+E+ ++ PI GQ + +++ + R L ++ C+ RR ++L+ YLP K E
Sbjct: 670 KEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKLLEGCIQRRDYSVLAPYLPPKHEY 729
Query: 405 VVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457
VV +++LQ++LY + + R GG+ G L+++ HP
Sbjct: 730 VVYTTLSELQQKLYGYYMTT---HREQSGGDVVGKGARLFQDFQDLRRIWTHP 779
Score = 315 (115.9 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 55/133 (41%), Positives = 96/133 (72%)
Query: 538 GYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDPDW 595
G Y RLDGS ++++R + + FN +N +F++S++AGG G+NL+ ANR+V+FD W
Sbjct: 960 GKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFDVSW 1019
Query: 596 NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH 655
NP++D Q++ RV+R GQ KPC++YR ++ G++E+K+ +RQ K+A + V+D E+ ++RH
Sbjct: 1020 NPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAKQATAKRVID-EQQISRH 1078
Query: 656 FSMSELRSLFQLE 668
++ ++L L+ E
Sbjct: 1079 YNQTDLMELYSYE 1091
Score = 47 (21.6 bits), Expect = 1.2e-64, Sum P(3) = 1.2e-64
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536
S KL++L +L + DK+++ S Q+LD+ E L
Sbjct: 897 SPKLLILLRLLQQCE-AIGDKLLVFSQSLQSLDVIEHFLSL 936
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 413 (150.4 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 123/408 (30%), Positives = 203/408 (49%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 1514 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 1567
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1568 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1624
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G ++ A + + S+M + +++I Y
Sbjct: 1625 VCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1683
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ ++++RR
Sbjct: 1684 EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRR 1743
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1744 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1801
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTM 431
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V
Sbjct: 1802 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVGNNS 1861
Query: 432 KGGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
+GG K G L ++ HP L +D I G+ E++M+
Sbjct: 1862 EGGRG-KAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1908
Score = 341 (125.1 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 78/197 (39%), Positives = 121/197 (61%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 2032 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 2090
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2091 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2150
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2151 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2209
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2210 FEPDLLDDPNSEKKKKR 2226
Score = 50 (22.7 bits), Expect = 3.0e-34, Sum P(3) = 3.0e-34
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL-LIELSAKLMVLDTMLAVIKMTT 513
N+P + + ++ A N + P Y ++E S K+++L +L + +
Sbjct: 1975 NNPSVSLKLEESKATSSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAE-EI 2033
Query: 514 DDKIVLVSNYTQTLDLFERLSKL 536
DK+++ S +LDL E +L
Sbjct: 2034 GDKVLVFSQSLISLDLIEDFLEL 2056
Score = 48 (22.0 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 26 PV-KKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHEN 65
PV KK+KR+ + ++DN +PN KLP +K+ + +N
Sbjct: 694 PVRKKDKRNSSD----SAIDNP-KPN-KLPKSKQSETVDQN 728
Score = 45 (20.9 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 416 ELYTNLIKSDAVRRTMK----GGE-NTKLGMTALSSITSLKK 452
+L T K D +R K G + +TK G +A SSI S KK
Sbjct: 766 DLKTQAGKDDKGKRKRKSSTSGSDFDTKKGKSAKSSIISKKK 807
Score = 40 (19.1 bits), Expect = 8.9e-64, Sum P(3) = 8.9e-64
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 1 RRSLAPSQLSK--RSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
RR+L+ + +K +S S + KK+K+ +S+K V E + NS TK
Sbjct: 1137 RRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSSKKKAVIV-KEKKRNSLRTSTKR 1195
Query: 59 EMSE 62
+ ++
Sbjct: 1196 KQAD 1199
Score = 38 (18.4 bits), Expect = 6.3e-25, Sum P(3) = 6.3e-25
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 359 QDSCASDAERTKANERLEQLIGIVNR 384
Q+ + DAER + E G V++
Sbjct: 872 QEGSSDDAERKQERETFSSAEGTVDK 897
Score = 37 (18.1 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 453 LCNHPDLVMDKIQTGADGFENAMNIL 478
+C HP+ ++D + FEN +L
Sbjct: 267 IC-HPEPLLDLVTACNSVFENLEQLL 291
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 416 (151.5 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 123/407 (30%), Positives = 201/407 (49%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 1491 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 1544
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1545 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1601
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G A ++ A + + S+M + +++I Y
Sbjct: 1602 VCPLNTALNWMNEFEKWQEGLNDAEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1660
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ +K++RR
Sbjct: 1661 EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRR 1720
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1721 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1778
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMK 432
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY +
Sbjct: 1779 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTAIQCKLYQYYLDHLTGNNNST 1838
Query: 433 GGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
G K G L ++ HP L +D I G+ E++M+
Sbjct: 1839 DGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1885
Score = 336 (123.3 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 77/197 (39%), Positives = 120/197 (60%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 2007 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 2065
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
+ R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2066 NAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2125
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2126 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2184
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2185 FEPDLLDDPNSEKKKKR 2201
Score = 49 (22.3 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 33 SCTSRKPLGSVDNEDEPNSKLPMTKEEMSEH 63
S S KP G +N P K +E S+H
Sbjct: 895 SAGSEKPSGKEENVHSPEDKRVTKSKEKSKH 925
Score = 43 (20.2 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 428 RRTMKGGE-NTKLGMTALSSITSLKKLCNHPD 458
+ + G + +TK G +A SS+ S KK N+ +
Sbjct: 759 KNSTSGSDFDTKKGKSAESSVISKKKRQNYSE 790
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 413 (150.4 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 123/408 (30%), Positives = 204/408 (50%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 1469 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 1522
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1523 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1579
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G ++ A + + S+M + +++I Y
Sbjct: 1580 VCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1638
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ ++++RR
Sbjct: 1639 EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRR 1698
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1699 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1756
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTM 431
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V +
Sbjct: 1757 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNSS 1816
Query: 432 KGGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
+GG K G L ++ HP L +D I G+ E++M+
Sbjct: 1817 EGGRG-KAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1863
Score = 341 (125.1 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 78/197 (39%), Positives = 121/197 (61%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 1988 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 2046
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2047 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2106
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2107 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2165
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2166 FEPDLLDDPNSEKKKKR 2182
Score = 49 (22.3 bits), Expect = 6.5e-34, Sum P(3) = 6.5e-34
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL-LIELSAKLMVLDTMLAVIKMTT 513
N+P + + ++ A N + P Y ++E S K+++L +L + +
Sbjct: 1931 NNPSVSLKLEESKAASSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAE-EI 1989
Query: 514 DDKIVLVSNYTQTLDLFERLSKL 536
DK+++ S +LDL E +L
Sbjct: 1990 GDKVLVFSQSLISLDLIEDFLEL 2012
Score = 45 (20.9 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 19/67 (28%), Positives = 25/67 (37%)
Query: 2 RSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNED--EPNSKLPMTKEE 59
R S K S K P V K S KPL NED NS+ +T +
Sbjct: 61 REEGASSSEKSKSSGSSRSKRKPSIVTKYVES-DDEKPLDEAVNEDASNENSENDITMQS 119
Query: 60 MSEHENL 66
+ + + L
Sbjct: 120 LPKEDGL 126
Score = 41 (19.5 bits), Expect = 5.8e-64, Sum P(3) = 5.8e-64
Identities = 19/62 (30%), Positives = 25/62 (40%)
Query: 4 LAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKP----LGSVDNEDEP--NSKLPMTK 57
L P LS SP + P K S KP LG N++E S++P+
Sbjct: 550 LTPVSLSN-SPVKGADCQEVPQDKDGYKSSGLDTKPEICGLGQEKNDNEHLVESEVPVLS 608
Query: 58 EE 59
EE
Sbjct: 609 EE 610
Score = 38 (18.4 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 359 QDSCASDAERTKANERLEQLIGIVNR 384
Q+ + DAER + E G +++
Sbjct: 833 QEGSSDDAERKQERENFSSTEGTIDK 858
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 413 (150.4 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 123/404 (30%), Positives = 200/404 (49%)
Query: 96 REGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGV 155
RE R+ L + T P ++ +L D++ + V V + L+PHQ +GV
Sbjct: 1064 RERLREKLRETIEVKESSQVTCP-ITTKLVLDEDEETKEPLVQVHRNMVTKLKPHQVDGV 1122
Query: 156 KFMYECVT-GVR-IEDAYG--CIMADEMGLGKTLQCITLMWTLLRQGPLAKPL-IDKAII 210
+FM++C VR +E + G CI+A MGLGKTLQ +TL+ T+L L + L A++
Sbjct: 1123 QFMWDCCCESVRKVEKSAGSGCILAHCMGLGKTLQVVTLLHTVL----LCEKLNFSTALV 1178
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYE 270
V P + V NW NE KW G ++ A + + ++++ YE
Sbjct: 1179 VCPLNTVLNWLNEFEKWQEGLKDEESLEVTELATVKRPQERAYALQRWQEDGGVMIMGYE 1238
Query: 271 TFRSHAS-----------VLHKNEVG--LVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+R+ K V V+CDEGH LKN S +A+ +K +RRV+L
Sbjct: 1239 MYRNLTQGRNIKSKKLKETFQKTLVDPDFVICDEGHVLKNEASAVSKAMNSIKTRRRVVL 1298
Query: 318 SGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKANERL 375
+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K +R
Sbjct: 1299 TGTPLQNNLIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLVDVRVMK--KRA 1356
Query: 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTMKGG 434
L ++ C+ RR L+K+LP K E V+ ++++ +Q +LY + V ++ G
Sbjct: 1357 HILYEMLAGCVQRRDYTALTKFLPPKHEYVLAVRLSPIQCKLYRYYLDHFTGVGSALESG 1416
Query: 435 ENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAM 475
+ + G L ++ HP L +D I G+ E++M
Sbjct: 1417 KG-RAGTKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSM 1459
Score = 325 (119.5 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 71/175 (40%), Positives = 104/175 (59%)
Query: 537 RGYKYVRLDGSMTIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPD 594
R Y RLDGS R K E FN SN +F++S++AG G+NL+ ANR+++FD
Sbjct: 1620 RNIDYYRLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGSLGINLVAANRVIIFDAS 1679
Query: 595 WNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
WNP+ D Q++ RV+R GQ K +VYRFL+ G++EEK+ RQ K++LS VVD ++ + R
Sbjct: 1680 WNPSYDIQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVAKQSLSFRVVD-QQQIER 1738
Query: 655 HFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLE--SDCTDDLSCWH 707
HF+M+EL L+ E + + D +K K R + P E D + C+H
Sbjct: 1739 HFTMNELTELYTFEPDQLDDPSEK-KSKRATPMLPKDPVLAELLHSYKDHIVCYH 1792
Score = 53 (23.7 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538
S K+++L +L + + DDK+++ S +LDL E +L G
Sbjct: 1560 SGKMVLLFEILRLAE-EVDDKVLVFSQSLISLDLIEDFLELAG 1601
Score = 50 (22.7 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 22 TFPPPVKKEKRSCTSRK--PLGSVDNEDEPNSKLPMTKEEMSEH 63
T P PVK++ C+++ P+G + E + +S L + E H
Sbjct: 390 TEPTPVKEDDLDCSTKNHNPVG--EEETQQDSNLADVEMESPPH 431
Score = 40 (19.1 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 35/150 (23%), Positives = 59/150 (39%)
Query: 7 SQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMS---EH 63
+ + SP SP + E++ K G +NE + ++ EE S
Sbjct: 422 ADVEMESPPHSPEKAQEQSEERSEEKE-NEEKENGEKENEAK-EQEIADNFEEGSVPPAE 479
Query: 64 ENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAH 123
E+L + I++ P VP + ++L V++E L D + + T S
Sbjct: 480 ESLDKDIVSIPPSVPEELFE----MVESLAVKKENNDDNLTDSSDNKS---NTEVVESKK 532
Query: 124 DLLKIDKDKIQVHVVVDPVLSNILRPHQRE 153
L K+ K K+ V + P+ I R RE
Sbjct: 533 SLTKLGK-KLVVKLTPVPLKITIKRDKSRE 561
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 655 (235.6 bits), Expect = 4.4e-64, Sum P(2) = 4.4e-64
Identities = 171/527 (32%), Positives = 279/527 (52%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAK-P 203
+Q+ GV++++E + + A G I+ DEMGLGKT+Q I L ++ +R +G +
Sbjct: 506 YQQTGVRWLWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFK 560
Query: 204 LIDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ IIV P++++ W E T W RVA L G + + + +G
Sbjct: 561 GLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTQKKEKLIRDIAHCHG----- 615
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
IL+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+
Sbjct: 616 -ILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 674
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +
Sbjct: 675 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 734
Query: 383 NRCLIRR--TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR + +S LP K EQV+ ++T+ Q ++Y N I S V R + G
Sbjct: 735 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRILNGD------ 788
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
M S + +L+K+CNHPDL + G +N I + K S K++
Sbjct: 789 MQIFSGLVALRKICNHPDLF-------SGGPKNLKTIPDDDEEDQFGYWKR----SGKMI 837
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
V++++L + +++L S Q LD+ E + + Y Y+++DG+ I R ++ +
Sbjct: 838 VVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRY 896
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK VYR
Sbjct: 897 NEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 956
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L
Sbjct: 957 LLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTL 1002
Score = 500 (181.1 bits), Expect = 7.4e-44, Sum P(3) = 7.4e-44
Identities = 133/438 (30%), Positives = 226/438 (51%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
IL+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+Q
Sbjct: 616 ILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQ 675
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +N
Sbjct: 676 NNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTIN 735
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKE-LYTNLIKSD--AVRRTMKGGENTKL- 439
L+RR +K++ + + + D ++ L+ L + + + E ++
Sbjct: 736 PYLLRR----------MKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSKEVYRIL 785
Query: 440 -G-MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSA 497
G M S + +L+K+CNHPDL +G G +N I + K S
Sbjct: 786 NGDMQIFSGLVALRKICNHPDLF-----SG--GPKNLKTIPDDDEEDQFGYWKR----SG 834
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
K++V++++L + +++L S Q LD+ E + + Y Y+++DG+ I R ++
Sbjct: 835 KMIVVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLI 893
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
+N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK
Sbjct: 894 TRYNEDTSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 953
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHD 677
VYR L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L S + +
Sbjct: 954 VYRLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTLTSPGASQSTE 1012
Query: 678 KIKCSRCVNGIQVKPPPL 695
G +V+ P L
Sbjct: 1013 T-SAIFAGTGSEVQTPKL 1029
Score = 40 (19.1 bits), Expect = 4.4e-64, Sum P(2) = 4.4e-64
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 25 PPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENL 66
P KK S K G+ +E E + LP T+EE+ E E +
Sbjct: 356 PKGKKTLESDMRLKVEGN--SEGEESEYLP-TEEELEEAEGV 394
Score = 39 (18.8 bits), Expect = 5.6e-64, Sum P(2) = 5.6e-64
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 28 KKEKRSCTSRKPLGSVDNEDEPNSKL 53
K E+ C S K ++ ED+ N ++
Sbjct: 21 KTEQSQCVSDKQEMTIKQEDDGNMEV 46
Score = 39 (18.8 bits), Expect = 7.4e-44, Sum P(3) = 7.4e-44
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 74 PFKVPILNYTGGGYSTK 90
PF+V IL+ TG Y+ K
Sbjct: 587 PFRVAILHETGS-YTQK 602
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 663 (238.4 bits), Expect = 7.1e-64, P = 7.1e-64
Identities = 173/527 (32%), Positives = 281/527 (53%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAK-P 203
+Q+ GV++++E + + A G I+ DEMGLGKT+Q I L ++ +R +G +
Sbjct: 499 YQQTGVRWLWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFE 553
Query: 204 LIDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ IIV P++++ W E T W RVA L G + + + +G
Sbjct: 554 GLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSFTHKKEKLVRDIAHCHG----- 608
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
IL+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+
Sbjct: 609 -ILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPM 667
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +
Sbjct: 668 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 727
Query: 383 NRCLIRR--TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR + +S LP K EQV+ ++TD Q ++Y N I S V R + G
Sbjct: 728 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGE------ 781
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
M S + +L+K+CNHPDL G F+ +P + G + S K++
Sbjct: 782 MQIFSGLVALRKICNHPDL----FSGGPKNFKG----IPGEELEEDQFGYW--KRSGKMI 831
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
V++++L + +++L S Q LD+ E + + Y Y+++DG+ TI R ++ +
Sbjct: 832 VVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRY 890
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK VYR
Sbjct: 891 NEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 950
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L
Sbjct: 951 LLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTL 996
Score = 507 (183.5 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 133/430 (30%), Positives = 223/430 (51%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
IL+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+Q
Sbjct: 609 ILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQ 668
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +N
Sbjct: 669 NNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTIN 728
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKE-LYTNLIKSD--AVRRTMKGGENTKL- 439
L+RR +K++ + + + D ++ L+ L + + E ++
Sbjct: 729 PYLLRR----------MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRIL 778
Query: 440 -G-MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSA 497
G M S + +L+K+CNHPDL G F+ +P + G + S
Sbjct: 779 NGEMQIFSGLVALRKICNHPDL----FSGGPKNFKG----IPGEELEEDQFGYW--KRSG 828
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
K++V++++L + +++L S Q LD+ E + + Y Y+++DG+ TI R ++
Sbjct: 829 KMIVVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLI 887
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
+N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK
Sbjct: 888 TRYNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 947
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHD 677
VYR L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L T DT
Sbjct: 948 VYRLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTL---TSPDTSQ 1003
Query: 678 KIKCSRCVNG 687
+ S G
Sbjct: 1004 STETSAIFAG 1013
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 661 (237.7 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 173/527 (32%), Positives = 282/527 (53%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAK-P 203
+Q+ GV++++E + + A G I+ DEMGLGKT+Q I L ++ +R +G +
Sbjct: 504 YQQTGVRWLWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFE 558
Query: 204 LIDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ +IV P++++ W E T W RVA L G + + + +G
Sbjct: 559 GLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCHG----- 613
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
+L+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+
Sbjct: 614 -VLITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 672
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL F G LGT F +Q+ PI G S AS + A + L +
Sbjct: 673 QNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 732
Query: 383 NRCLIRR--TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR + +S LP K EQV+ ++TD Q ++Y N I S AV R + G EN
Sbjct: 733 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNG-ENQ--- 788
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
S + +L+K+CNHPDL + G +N + LP + G + S K++
Sbjct: 789 --IFSGLVALRKICNHPDLF-------SGGPKNT-SALPEDGLEEEQFGYW--KRSGKMI 836
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
V++++L + +++L S Q L + E + Y Y+++DG+ TI R ++ +
Sbjct: 837 VVESLLKIWHKQ-GQRVLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKY 895
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK VYR
Sbjct: 896 NEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 955
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L
Sbjct: 956 LLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTL 1001
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 412 (150.1 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 123/408 (30%), Positives = 204/408 (50%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 1510 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 1563
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1564 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1620
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G ++ A + + S+M + +++I Y
Sbjct: 1621 VCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1679
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ ++++RR
Sbjct: 1680 EMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRR 1739
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1740 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1797
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTM 431
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V +
Sbjct: 1798 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNSN 1857
Query: 432 KGGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
+GG K G L ++ HP L +D I G+ E++M+
Sbjct: 1858 EGGRG-KAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1904
Score = 341 (125.1 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 78/197 (39%), Positives = 121/197 (61%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 2029 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 2087
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2088 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2147
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2148 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2206
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2207 FEPDLLDDPNSEKKKKR 2223
Score = 39 (18.8 bits), Expect = 1.5e-63, Sum P(3) = 1.5e-63
Identities = 17/44 (38%), Positives = 18/44 (40%)
Query: 7 SQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPN 50
S+ SK S S K P V K S KPL NED N
Sbjct: 68 SEKSKSS--GSSRSKRKPSVVTKYVES-DDEKPLDETVNEDASN 108
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 416 (151.5 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 124/408 (30%), Positives = 205/408 (50%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L ++ K + +QVH + V+ L+PHQ +G
Sbjct: 1499 REKLREVIEIEDASPTKCPITTKLVLDENEETK--EPLVQVHR--NMVIK--LKPHQVDG 1552
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 1553 VQFMWDCCCESVEKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 1609
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN-KLNSFMQTYGRRPVNPILVISY 269
V P + NW NE KW G ++ A + + S+M + +++I Y
Sbjct: 1610 VCPLNTALNWMNEFEKWQEGLNDNEKLEVSELATVKRPQERSYMLQRWQED-GGVMIIGY 1668
Query: 270 ETFRSHAS-----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRR 314
E +R+ A + +K V V+CDEGH LKN S +A+ +K++RR
Sbjct: 1669 EMYRNLAQGRNVKSRKLKDIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRR 1728
Query: 315 VLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKAN 372
++L+GTP+QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K
Sbjct: 1729 IILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK-- 1786
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTM 431
+R L ++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V +
Sbjct: 1787 KRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTAIQCKLYQYYLDHLTGVGNST 1846
Query: 432 KGGENTKLGMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
+GG K G L ++ HP L +D I G+ E++M+
Sbjct: 1847 EGGRG-KAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 1893
Score = 334 (122.6 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 82/233 (35%), Positives = 136/233 (58%)
Query: 457 PDLVMDKI-QTGADGFENA--MNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
PD D + T A+ E++ M +L + + G ++ S L+ LD + +++ +
Sbjct: 1982 PDWYKDFVTDTDAEVLEHSGKMVLLFEILRMAEEIGDKVLVFSQSLISLDLIEDFLELAS 2041
Query: 514 DDKIVLVSNYTQTLDLFERLSK-LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEF--IFM 570
+K + + L +++ K +R Y RLDGS + R K E FN +N +F+
Sbjct: 2042 REK---TEDKEKPL-IYKGEGKWIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFI 2097
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+S+KAG G+NL+ ANR+++FD WNP+ D Q++ RV+R GQ KP +VYRFL+ G++E+K
Sbjct: 2098 ISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTMEDK 2157
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSR 683
+ RQ K++LS VVD ++ V RHF+M+EL L+ E + + D + + K R
Sbjct: 2158 IYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYTFEPDLLDDPNSEKKKKR 2209
Score = 40 (19.1 bits), Expect = 2.1e-63, Sum P(3) = 2.1e-63
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 57 KEEMSEHENLIRQIL 71
+EE+S+HEN + +L
Sbjct: 622 REEISDHENNVTILL 636
Score = 37 (18.1 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 428 RRTMKGGE-NTKLGMTALSSITSLKKLCNHPD 458
+ + G + +TK G + +SI S KK N+ +
Sbjct: 764 KNSTSGSDFDTKKGKSTETSIISKKKRQNYSE 795
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 397 (144.8 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 98/322 (30%), Positives = 175/322 (54%)
Query: 367 ERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDA 426
++ K E E+ N+C R + L K + +V ++ +Q+++Y I D
Sbjct: 345 KKLKLEEGFEEEEDQENKCPNAREGVEMPS-LTRKNDLIVWTYLSSVQEDIYNKFISLDQ 403
Query: 427 VRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK--IQTGAD-GFENAMNILPTGYA 483
++ + T+ + L+ +T LKKLC+HP L+ + IQ G + G ++ + +
Sbjct: 404 IKELLT---TTR---SPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVHSDESES 457
Query: 484 ASYK----SGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGY 539
A + S LIE S KL + +++ ++ + ++ S + LD+ ER+ + R +
Sbjct: 458 AVSQIDNISDHTLIEESGKLQFVVSLMECLR-EEGHRTLIFSQSRKMLDIMERVLRNRNF 516
Query: 540 KYVRLDGSMT-IKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
+ +RLDG++T + +R K + F IF+L+++ GG G+ L GANR+V+FDP WNPA
Sbjct: 517 RLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPA 576
Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
D QA+ R +R GQ + +YR ++ G++EEK+ +RQ K +L +++ R+FS
Sbjct: 577 TDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSK 636
Query: 659 SELRSLFQLEENTISDTHDKIK 680
ELR LF+LE+ S T +++
Sbjct: 637 QELRELFKLEDTRSSSTQQQLQ 658
Score = 338 (124.0 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 85/249 (34%), Positives = 131/249 (52%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L HQ+EGV F+Y R G I+AD+MGLGKT+Q I+ + G L +
Sbjct: 105 LYDHQKEGVAFLYSLYRDGR----KGGILADDMGLGKTIQVISFL-----SGMYDAELAN 155
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN-PIL 265
++V P+SL+KNW E KW G + G SK E + L + G +L
Sbjct: 156 HTLLVMPTSLIKNWVREFAKWTPG-MRVKEFHGSSKTERNRNLERIQRKGGVIITTYQML 214
Query: 266 VISYETFRSHASVLHKN-EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
+ +YE S+ H+ + V+ DE H++K ++T ++ + AK RVLL+GTP+QN
Sbjct: 215 INNYEQLGSNG---HREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQN 271
Query: 325 DLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
+L E ++L F QG +LGT++ F+ +YE PI R ++ A+ E+ + L I+
Sbjct: 272 NLREMWALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIK 331
Query: 384 RCLIRRTSA 392
+RRT A
Sbjct: 332 PYFLRRTKA 340
Score = 43 (20.2 bits), Expect = 8.0e-26, Sum P(2) = 8.0e-26
Identities = 18/70 (25%), Positives = 29/70 (41%)
Query: 459 LVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDD--- 515
L + T A+ +N N+L SGK + K LD L I + T D
Sbjct: 1386 LPVSSTNTAAEASDNKYNLLVL-------SGKQSLAEGRKQEALDFFLKAIDINTGDPEI 1438
Query: 516 KIVLVSNYTQ 525
+++++ Y Q
Sbjct: 1439 QLLIIQLYRQ 1448
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 403 (146.9 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 145/497 (29%), Positives = 237/497 (47%)
Query: 14 PEDSPGIK-TFP-PPVKKEKRSCTSRKPLGSVDN-EDEPN--SKLPMTKEEMSEHENLIR 68
P+DS T+ P +KK+K+ + S N EDE N SK P + IR
Sbjct: 1372 PDDSSSENNTYRLPDLKKKKKQ--PQYLFSSESNSEDEENDDSKSP------GKGRKKIR 1423
Query: 69 QILAKP-FKVPILNYTGGGYSTKALGVRREGARKALHDPTA-PNALVLYTPPQLSAHDLL 126
+I+ + N + RE R+ L + +A L P ++ +L
Sbjct: 1424 KIIKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDASPLKCP--ITTKLVL 1481
Query: 127 KIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYEC----VTGVRIEDAYGCIMADEMGLG 182
D++ + V V + L+PHQ +GV+FM++C V + GCI+A MGLG
Sbjct: 1482 DEDEETKEPLVQVHRSIVTRLKPHQVDGVQFMWDCCCESVKKTKTSPGSGCILAHCMGLG 1541
Query: 183 KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
KTLQ ++ + T+L L A++V P + NW NE KW G ++
Sbjct: 1542 KTLQVVSFLHTVLLCDKLN---FRTALVVCPLNTALNWLNEFEKWQEGLEDDEKLEVCEL 1598
Query: 243 AEIDN-KLNSFM-QTYGRRPVNPILVISYETFRSHAS-----------VLHKNEVG---- 285
A + + S+M Q + + +++I YE +R+ A + +K V
Sbjct: 1599 ATVKRPQERSYMLQRW--QDEGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKALVDPGPD 1656
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
V+CDEGH LKN S +A+ ++++RR++L+GTP+QN+L+EY +V+F+ + +LG+ +
Sbjct: 1657 FVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIK 1716
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EFR ++ PI GQ DS D K +R L ++ C+ R+ L+K+LP K E
Sbjct: 1717 EFRNRFINPIQNGQCADSTLVDVRVMK--KRAHILYEMLAGCVQRKDYTALTKFLPPKYE 1774
Query: 404 QVVCIKMTDLQKELYTNLIKS-DAVRRTMKGGENTKLGMTALSSITSLKKLCNHP-DLVM 461
V+ ++MT +Q +LY + V +GG K G L ++ HP L +
Sbjct: 1775 YVLEVRMTPIQCKLYQYYLDHLTGVGGGNEGGRG-KAGAKLFQDFQMLSRIWTHPWCLQL 1833
Query: 462 DKIQTGADGF--ENAMN 476
D I G+ E++M+
Sbjct: 1834 DYISKENKGYFDEDSMD 1850
Score = 337 (123.7 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 77/197 (39%), Positives = 119/197 (60%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQT----LDLFERLSK-LRGYKYVRLDGSM 548
EL K++V L + + D + ++N +T +++ K R Y RLDGS
Sbjct: 1975 ELGDKVLVFSQSLISLDLIED--FLELANREKTDKEKPPIYKGEGKWFRNIDYYRLDGST 2032
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 2033 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 2092
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP FVYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 2093 VYRFGQSKPVFVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 2151
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 2152 FEPDLLDDPNSEKKKKR 2168
Score = 58 (25.5 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 22/87 (25%), Positives = 41/87 (47%)
Query: 451 KKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL-LIELSAKLMVLDTMLAVI 509
++L N+P LV+ + A N + P Y ++E S K+++L +L +
Sbjct: 1914 EELGNNPSLVVKSEEGKATSSSNPGSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMA 1973
Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKL 536
+ DK+++ S +LDL E +L
Sbjct: 1974 E-ELGDKVLVFSQSLISLDLIEDFLEL 1999
Score = 38 (18.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 345 QEFRKQYETPILRGQDSCASDAERT 369
++ +K + L+G+ +SDAE++
Sbjct: 898 EKLKKNLKKEALKGKHDESSDAEKS 922
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 327 (120.2 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 71/202 (35%), Positives = 116/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 458 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 517
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 518 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 575
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 576 NVILVRLSQIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 630
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q E +++ G A +
Sbjct: 631 LQKENLANEQDLDVEELGSAGT 652
Score = 292 (107.8 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 58/136 (42%), Positives = 90/136 (66%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 776 VRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 835
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC++YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 836 SWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 894
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 895 LNFTRKEVENLLHFVE 910
Score = 167 (63.8 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 47/134 (35%), Positives = 72/134 (53%)
Query: 120 LSAHD-----LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDA 170
L+ HD L+ ++ + +V + P L+ ++PHQ G++F+Y E + +
Sbjct: 238 LNQHDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSG 297
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
+GCI+A MGLGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL
Sbjct: 298 FGCILAHSMGLGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPA 352
Query: 231 RVAALPIDGGSKAE 244
ALP D SK E
Sbjct: 353 P-EALPAD--SKPE 363
Score = 44 (20.5 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 710 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 753
Score = 40 (19.1 bits), Expect = 3.5e-33, Sum P(4) = 3.5e-33
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 441 QEFRREFEKALCRPGPDVVICD 462
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 327 (120.2 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 71/202 (35%), Positives = 116/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 458 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 517
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 518 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 575
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 576 NVILVRLSQIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 630
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q E +++ G A +
Sbjct: 631 LQKENLANEQDLDVEELGSAGT 652
Score = 292 (107.8 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 58/136 (42%), Positives = 90/136 (66%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 776 VRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 835
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC++YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 836 SWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 894
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 895 LNFTRKEVENLLHFVE 910
Score = 167 (63.8 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 47/134 (35%), Positives = 72/134 (53%)
Query: 120 LSAHD-----LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDA 170
L+ HD L+ ++ + +V + P L+ ++PHQ G++F+Y E + +
Sbjct: 238 LNQHDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSG 297
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
+GCI+A MGLGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL
Sbjct: 298 FGCILAHSMGLGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPA 352
Query: 231 RVAALPIDGGSKAE 244
ALP D SK E
Sbjct: 353 P-EALPAD--SKPE 363
Score = 44 (20.5 bits), Expect = 2.9e-63, Sum P(4) = 2.9e-63
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 710 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 753
Score = 40 (19.1 bits), Expect = 3.5e-33, Sum P(4) = 3.5e-33
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 441 QEFRREFEKALCRPGPDVVICD 462
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 331 (121.6 bits), Expect = 4.3e-63, Sum P(4) = 4.3e-63
Identities = 72/202 (35%), Positives = 116/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 462 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 521
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ L RR +L +LP K E
Sbjct: 522 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLELFLSRRGHTVLKIHLPAKEE 579
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 580 NVILVRLSQIQRDLYTQFM--DRFRDC---GNSGWLGLNPLKAFCVCCKIWNHPDVLYEA 634
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q E +++ G A +
Sbjct: 635 LQKENLANEQDLDVEELGSAGT 656
Score = 290 (107.1 bits), Expect = 4.3e-63, Sum P(4) = 4.3e-63
Identities = 66/166 (39%), Positives = 100/166 (60%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 780 IRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 839
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC +YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 840 SWNPCHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVD-DLNPM 898
Query: 654 RHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDC 699
+F+ E+ +L E + + S V GI K P L+ C
Sbjct: 899 LNFTRKEVENLLHFVEKEPAP-----QTSLNVKGI--KEPVLQLAC 937
Score = 166 (63.5 bits), Expect = 4.3e-63, Sum P(4) = 4.3e-63
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 125 LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMG 180
L+ ++ + +V + P L+ ++PHQ G++F+Y E + + +GCI+A MG
Sbjct: 250 LVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 309
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGG 240
LGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL ALP D
Sbjct: 310 LGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPAP-EALPAD-- 361
Query: 241 SKAE 244
SK E
Sbjct: 362 SKPE 365
Score = 44 (20.5 bits), Expect = 4.3e-63, Sum P(4) = 4.3e-63
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 714 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 757
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 329 (120.9 bits), Expect = 5.7e-63, Sum P(4) = 5.7e-63
Identities = 71/202 (35%), Positives = 117/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 288 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 347
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 348 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 405
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 406 NVILVRLSKIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 460
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q + E +++ G A +
Sbjct: 461 LQKESLANEQDLDVEELGSAGT 482
Score = 292 (107.8 bits), Expect = 5.7e-63, Sum P(4) = 5.7e-63
Identities = 58/136 (42%), Positives = 90/136 (66%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 606 VRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 665
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC++YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 666 SWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 724
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 725 LNFTRKEVENLLHFVE 740
Score = 162 (62.1 bits), Expect = 5.7e-63, Sum P(4) = 5.7e-63
Identities = 41/118 (34%), Positives = 65/118 (55%)
Query: 125 LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMG 180
L+ ++ + +V + P L+ ++PHQ G++F+Y E + + +GCI+A MG
Sbjct: 78 LVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 137
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
LGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL ALP D
Sbjct: 138 LGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPPP-EALPAD 189
Score = 44 (20.5 bits), Expect = 5.7e-63, Sum P(4) = 5.7e-63
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 540 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 583
Score = 40 (19.1 bits), Expect = 1.1e-32, Sum P(4) = 1.1e-32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 271 QEFRREFEKALCRPGPDVVICD 292
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 653 (234.9 bits), Expect = 8.6e-63, P = 8.6e-63
Identities = 173/534 (32%), Positives = 279/534 (52%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAKPL 204
+Q+ GV++++E + + A G I+ DEMGLGKT+Q I L ++ +R +G +
Sbjct: 505 YQQTGVRWLWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRYQ 559
Query: 205 -IDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ +IV P++++ W E T W RVA L G + + +G
Sbjct: 560 GLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIREIASCHG----- 614
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
IL+ SY R +H + V+ DEGH+++N + A + R++LSG+P+
Sbjct: 615 -ILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 673
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL FV G LGT F +Q+ PI G S AS + A + L +
Sbjct: 674 QNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAI 733
Query: 383 NRCLIRRTSA--LLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR A +S LP K EQV+ ++TD Q+++Y N I S V + + G
Sbjct: 734 NPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSKEVYQILNGD------ 787
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTG-YAASYKSGKLLIELSAKL 499
M S + +L+K+CNHPDL G + +P + + G + S K+
Sbjct: 788 MQVFSGLVALRKICNHPDLF--------SGGPKILKCVPDADLEEADQFGYW--KRSGKM 837
Query: 500 MVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVET 559
+V++++L + +++ + Q L + E + R Y Y+R+DG+ TI R ++
Sbjct: 838 IVVESLLKIWHKQ-GHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITR 896
Query: 560 FNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
+N+ + FIF+L+++ GG G+NL GA+R++++DPDWNP+ D QA R WR GQKK VY
Sbjct: 897 YNEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVY 956
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTIS 673
R L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L +S
Sbjct: 957 RLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTLSSPDVS 1009
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 329 (120.9 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 71/202 (35%), Positives = 117/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 459 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 519 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 576
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 577 NVILVRLSKIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 631
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q + E +++ G A +
Sbjct: 632 LQKESLANEQDLDVEELGSAGT 653
Score = 292 (107.8 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 58/136 (42%), Positives = 90/136 (66%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 777 VRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 836
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC++YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 837 SWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 895
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 896 LNFTRKEVENLLHFVE 911
Score = 162 (62.1 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 41/118 (34%), Positives = 65/118 (55%)
Query: 125 LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMG 180
L+ ++ + +V + P L+ ++PHQ G++F+Y E + + +GCI+A MG
Sbjct: 249 LVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
LGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL ALP D
Sbjct: 309 LGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPPP-EALPAD 360
Score = 44 (20.5 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 711 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 754
Score = 40 (19.1 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 442 QEFRREFEKALCRPGPDVVICD 463
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 329 (120.9 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 71/202 (35%), Positives = 117/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 459 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 519 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 576
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 577 NVILVRLSKIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 631
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q + E +++ G A +
Sbjct: 632 LQKESLANEQDLDVEELGSAGT 653
Score = 290 (107.1 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 66/166 (39%), Positives = 100/166 (60%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 777 VRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 836
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC +YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 837 SWNPCHDAQAVCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRVVD-DLNPM 895
Query: 654 RHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDC 699
+F+ E+ +L E + + S V GI K P L+ C
Sbjct: 896 LNFTRKEVENLLHFVEKEPAP-----QASLNVKGI--KEPVLQLAC 934
Score = 164 (62.8 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 41/118 (34%), Positives = 65/118 (55%)
Query: 125 LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMG 180
L+ ++ + +V + P L+ ++PHQ G++F+Y E + + +GCI+A MG
Sbjct: 249 LVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
LGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL ALP D
Sbjct: 309 LGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPAP-EALPAD 360
Score = 44 (20.5 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 711 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 754
Score = 40 (19.1 bits), Expect = 2.2e-32, Sum P(4) = 2.2e-32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 442 QEFRREFEKALCRPGPDVVICD 463
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 326 (119.8 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 71/202 (35%), Positives = 116/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 458 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 517
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 518 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 575
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 576 NVILVRLSQIQRDLYTQFM--DRFRDC---GTSGWLGLNPLKAFCVCCKIWNHPDVLYEA 630
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q E +++ G A +
Sbjct: 631 LQKENLANEQDLDVEELGSAGT 652
Score = 288 (106.4 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 58/136 (42%), Positives = 89/136 (65%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 776 VRNVSYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 835
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC +YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 836 SWNPCHDAQAVCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 894
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 895 LNFTRKEVENLLHFVE 910
Score = 167 (63.8 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 47/134 (35%), Positives = 72/134 (53%)
Query: 120 LSAHD-----LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDA 170
L+ HD L+ ++ + +V + P L+ ++PHQ G++F+Y E + +
Sbjct: 238 LNQHDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSG 297
Query: 171 YGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG 230
+GCI+A MGLGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL
Sbjct: 298 FGCILAHSMGLGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPA 352
Query: 231 RVAALPIDGGSKAE 244
ALP D SK E
Sbjct: 353 P-EALPAD--SKPE 363
Score = 44 (20.5 bits), Expect = 2.0e-62, Sum P(4) = 2.0e-62
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 710 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 753
Score = 40 (19.1 bits), Expect = 1.8e-32, Sum P(4) = 1.8e-32
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 441 QEFRREFEKALCRPGPDVVICD 462
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 349 (127.9 bits), Expect = 5.5e-62, Sum P(3) = 5.5e-62
Identities = 85/230 (36%), Positives = 128/230 (55%)
Query: 444 LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLD 503
L + L+K+CNHPDLV D N Y KSGK+ VL
Sbjct: 579 LMGVDILRKICNHPDLVY------RDTLMKRKN-----YGDPAKSGKM--------QVLK 619
Query: 504 TMLAVIKMTTDDKIVLVSNYTQTLDLFER----LSKLRG--YKYVRLDGSMTIKKRAKVV 557
+L + + + + K +L Q LD+ E+ LS + G + Y+R+DGS I KR +V
Sbjct: 620 NLLRLWQ-SENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKRQMLV 678
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
+ FN+ + +F+L++K GG G+NL GA+R++++DPDWNP+ D QA R WR GQK+
Sbjct: 679 DAFNQDPDMHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQARERAWRLGQKRDIT 738
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
+YR ++TGSIEEK+ RQ K L++ ++ + R F ++L LF L
Sbjct: 739 IYRLMTTGSIEEKIYHRQIFKTFLTNKILK-DPKQRRFFKANDLHDLFTL 787
Score = 300 (110.7 bits), Expect = 5.5e-62, Sum P(3) = 5.5e-62
Identities = 66/197 (33%), Positives = 116/197 (58%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
+LV +Y R ++ + E G V+ DEGH+++N +S +K R++LSGTPIQ
Sbjct: 405 VLVTTYVGLRIYSKHILPREWGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSGTPIQ 464
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L+E +SL FV G LGT F++++ PI G + +++ + A + L +++
Sbjct: 465 NNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYANSNNLQVKTAYKCAVVLRDLIS 524
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
++RR + +++ LP K E V+ +K+T +Q+ELY + ++S+ + +KG N +G
Sbjct: 525 PYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQELYESFLQSEDLESILKGKRNVLMG--- 581
Query: 444 LSSITSLKKLCNHPDLV 460
+ L+K+CNHPDLV
Sbjct: 582 ---VDILRKICNHPDLV 595
Score = 118 (46.6 bits), Expect = 5.5e-62, Sum P(3) = 5.5e-62
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
+Q+ V++++E T G I+ DEMGLGKT+Q I+ + L G L KP++
Sbjct: 274 YQKTCVQWLWELYT-----QKTGGIIGDEMGLGKTIQIISFLAGLHYSGLLDKPVL---- 324
Query: 210 IVAPSSLVKNWCNEITKWLGG-RVAAL-PIDGGSKAEI-DNKLNSFMQT 255
+V P++++ W NE +W R L I G + ++KL ++++
Sbjct: 325 VVVPATVLNQWVNEFHRWWPPLRCIILHSIGSGMNGSVSESKLEEYLES 373
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 324 (119.1 bits), Expect = 6.8e-62, Sum P(4) = 6.8e-62
Identities = 74/204 (36%), Positives = 115/204 (56%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC + T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LG+ Q
Sbjct: 468 VVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGSRQ 527
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANER-LEQLI-GIVNRCLIRRTSALLSKYLPVK 401
EF +E PIL GQ DS D + L L+ G V R L RR +L LP K
Sbjct: 528 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQR-LPRRGHNVLKVQLPSK 586
Query: 402 TEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM 461
E V+ ++++ +Q+ LYT + R G + LG+ L + K+ NHPD++
Sbjct: 587 EEHVILVRLSKIQRALYTEFMN-----RFRDAGNSGWLGLNPLKAFCVCCKIWNHPDVLY 641
Query: 462 DKIQTGADGFENAMNILPTGYAAS 485
+ +Q E +++ G A++
Sbjct: 642 EALQKENLANEQDLDVDDLGTAST 665
Score = 296 (109.3 bits), Expect = 6.8e-62, Sum P(4) = 6.8e-62
Identities = 60/136 (44%), Positives = 89/136 (65%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNE--FIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS + +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 788 VRNISYYRLDGSTSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNLIGANRVVVFDA 847
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC +YR +S ++E+K+ RQ K+ +S VVD V
Sbjct: 848 SWNPCHDAQAVCRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDLNPVL 907
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 908 -NFTRREVENLLHFVE 922
Score = 151 (58.2 bits), Expect = 6.8e-62, Sum P(4) = 6.8e-62
Identities = 39/122 (31%), Positives = 65/122 (53%)
Query: 125 LLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMG 180
++ I+ + + + P L++ ++PHQ G++F+Y E + + +GCI+A MG
Sbjct: 258 IVNINHPPNEEDIFLAPQLAHAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 317
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGG 240
LGKT+Q I+ + L R AK ++ AI+ P + ++NW E WL LP D
Sbjct: 318 LGKTIQVISFLDVLFRHTE-AKTVL--AIV--PVNTLQNWLAEFNMWLPAP-ENLPPDYN 371
Query: 241 SK 242
SK
Sbjct: 372 SK 373
Score = 43 (20.2 bits), Expect = 6.8e-62, Sum P(4) = 6.8e-62
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER-LSK 535
Y++G ++E S K MVL L + DKI++ S TL + E L+K
Sbjct: 724 YQTG--VLENSPK-MVLLFHLVEESVKLGDKILVFSQSLSTLSVIEEFLAK 771
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 376 (137.4 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 103/324 (31%), Positives = 169/324 (52%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+ N+ +Q V+++YE + ++ G I+ DEMGLGKT+Q ++ + +L L
Sbjct: 791 IYKNLFE-YQVTCVRWLYE----LHCQETGG-IVGDEMGLGKTVQIVSFLASLHYSRRLG 844
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDG-GSKAEIDNKLNSFMQTYGRR 259
P A+IVAP++L+ NW E KW RV G G + ++ +
Sbjct: 845 GP----ALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIVKKIAEK 900
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319
IL+ ++++ R + +L K V+ DEGH+++N +++ + L+ RV+LSG
Sbjct: 901 --GHILLTTFDSIRINQEILLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSG 958
Query: 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379
+PIQN L E +SL FV G LGT F+ Q+ PI G + AS + A + L
Sbjct: 959 SPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFSLPISVGGFANASPIQVQAAYKCAVALR 1018
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKL 439
+++ ++RR + + K LP K EQV+ +T Q++LY + S+ ++ + G N
Sbjct: 1019 DLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSVLDGRRN--- 1075
Query: 440 GMTALSSITSLKKLCNHPDLV-MD 462
AL I LKK+CNHPD++ MD
Sbjct: 1076 ---ALYGIDILKKICNHPDILHMD 1096
Score = 354 (129.7 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 77/187 (41%), Positives = 118/187 (63%)
Query: 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER-LSKLRGYKYVRLDGSMTIK 551
IE SAKL V++T+L + DK++L Q LD+ E+ + + Y+R+DG+ +I+
Sbjct: 1109 IERSAKLKVVETILP-LWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIR 1167
Query: 552 KRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
+R +VE FN + FIF+L++K GG GLNL GANR+++FDPDWNP+ D QA RV+R G
Sbjct: 1168 QRQCLVEQFNIDPSLFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIG 1227
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENT 671
QKK +YR ++ G+IEEK+ RQ +K+ L++ ++ + R F + LF +N
Sbjct: 1228 QKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKILK-DPRQKRFFKSKHFKDLFTYTKNK 1286
Query: 672 I-SDTHD 677
S+T D
Sbjct: 1287 KGSETGD 1293
Score = 39 (18.8 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 25 PPVKKEKRSCTSRKPLGSVDNEDEPNS 51
PP K K+S + K + + ++ +P +
Sbjct: 491 PPPKSSKKSNSKLKKISTPKSKSKPKN 517
Score = 39 (18.8 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 17 SPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKL 53
S G K F P+KK ++K + E + K+
Sbjct: 394 SGGSKIFLKPIKKTTNRFDAKKKKVLTEKEKKKQKKM 430
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 324 (119.1 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 72/216 (33%), Positives = 119/216 (55%)
Query: 258 RRPVNPILVI------SYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKA 311
++P P+++ E ++ L + +V+CDEGHR+KNC + T QAL +++
Sbjct: 435 KKPAGPVIIDLDEEDRQQELMKAIERALSRPGPDVVICDEGHRIKNCHASTSQALKNIRS 494
Query: 312 KRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERT 369
+RRV+L+G P+QN+L+EY+ +V FV LGT QEF +E PIL GQ DS D +
Sbjct: 495 RRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVQLM 554
Query: 370 KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRR 429
+ + L ++ + RR +L LP K E V+ ++++ LQ+ LYT + R
Sbjct: 555 RYRSHV--LHSLLEGFVQRRGHDVLRHQLPPKEEHVILVRLSRLQRALYTEFMN-----R 607
Query: 430 TMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQ 465
+ G + LG+ L + K+ NHPD++ + +Q
Sbjct: 608 FREAGNSGWLGLNPLKAFCVCCKIWNHPDVLYEALQ 643
Score = 291 (107.5 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 58/136 (42%), Positives = 88/136 (64%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNE--FIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS + +R +++ FN +N ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 774 VRNINYYRLDGSTSASERERLINQFNDPANTQAWVFLLSTRAGCLGVNLIGANRVVVFDA 833
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQ+KPC +YR + ++E+K+ RQ K+ +S VVD V
Sbjct: 834 SWNPCHDAQAVCRVYRYGQRKPCHIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDLNPVL 893
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ SL E
Sbjct: 894 -NFTRKEVESLLHFVE 908
Score = 158 (60.7 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 42/125 (33%), Positives = 65/125 (52%)
Query: 118 PQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMY----ECVTGVRIEDAYGC 173
P L+ I+ + + + P L+ ++PHQ G++F+Y E + + +GC
Sbjct: 252 PDSQGRVLININHPAEEEDLFLAPQLARAVKPHQIGGIRFLYDNLVESLERYKTSSGFGC 311
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+A MGLGKTLQ I+ + LLR AK ++ AI+ P + ++NW E WL
Sbjct: 312 ILAHSMGLGKTLQVISFIDVLLRHTG-AKTVL--AIV--PVNTLQNWLAEFNLWLPA-AE 365
Query: 234 ALPID 238
ALP D
Sbjct: 366 ALPPD 370
Score = 40 (19.1 bits), Expect = 9.7e-49, Sum P(4) = 9.7e-49
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 68 RQILAKPFKVPILN 81
+Q+L + FKV ILN
Sbjct: 374 QQVLPRTFKVHILN 387
Score = 38 (18.4 bits), Expect = 5.4e-61, Sum P(4) = 5.4e-61
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 36 SRKPLGSVDNEDEPNSKLPMTKEEMSEHE 64
S + + D E NS+ +EEM E E
Sbjct: 2 SEEAISGSDLEPSLNSEEEEEEEEMDEEE 30
Score = 37 (18.1 bits), Expect = 6.8e-61, Sum P(4) = 6.8e-61
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 46 EDEPNSKLPMTKEEMSEHEN 65
E+E S P T+E H N
Sbjct: 227 EEEDRSLTPGTEESSGSHIN 246
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 635 (228.6 bits), Expect = 6.0e-61, P = 6.0e-61
Identities = 167/527 (31%), Positives = 279/527 (52%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT----LMWTLLR-QGPLAKPL 204
+Q+ GV++M+E + + A G I+ DEMGLGKT+Q I L ++ L+ +G +
Sbjct: 487 YQQTGVRWMWE----LHCQQAGG-ILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYA 541
Query: 205 -IDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
+ +IV P++++ W E T W RVA L G ++ + + + ++G
Sbjct: 542 GLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHG----- 596
Query: 263 PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
IL+ SY R + + + V+ DEGH+++N + A + R +LSG+P+
Sbjct: 597 -ILITSYSYIRIMQDYIQRYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPM 655
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+L E +SL FV G LGT F +Q+ PI G + AS + A + L +
Sbjct: 656 QNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYANASPVQVQTAYKCACVLRDTI 715
Query: 383 NRCLIRRTSALLSKYL--PVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
N L+RR A + L P K EQV+ ++T+ Q+++Y + S V + + G
Sbjct: 716 NPYLLRRMKADVKANLSLPDKNEQVLFCRLTEDQRQVYQTFLDSKEVYQILNGD------ 769
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
M S + +L+K+CNHPDL TG + +P + + S K++
Sbjct: 770 MQVFSGLIALRKICNHPDLF-----TGGP---RLLRGIPHDQLTEEEHFGYW-KRSGKMI 820
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
V++++L + +++L + Q L++ E K G+ Y+++DG+ TI R ++ F
Sbjct: 821 VVESLLRLWHKQ-GHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQF 879
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N+ + F+F+L+++ GG G+NL GANR+V++DPDWNP+ D QA R WR GQK+ VYR
Sbjct: 880 NQNKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVYR 939
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
L+ G+IEEK+ RQ K+ L++ V+ + R F +++ LF L
Sbjct: 940 LLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDIYELFTL 985
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 366 (133.9 bits), Expect = 8.6e-61, Sum P(2) = 8.6e-61
Identities = 105/340 (30%), Positives = 172/340 (50%)
Query: 160 ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219
E V + GCI+A MGLGKTLQ ++ + T+L L A++V P + N
Sbjct: 296 ESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALVVCPLNTALN 352
Query: 220 WCNEITKWLGGRVAALPIDGGSK-AEIDN-KLNSFMQTYGRRPVNPILVISYETFRSHAS 277
W NE KW G ++ S+ A + + S+M + +++I YE +R+ A
Sbjct: 353 WMNEFEKWQEGLKDDEKLEKVSELATVKRPQERSYMLQRWQED-GGVMIIGYEMYRNLAQ 411
Query: 278 -----------VLHKNEVG----LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
+ +K V V+CDEGH LKN S +A+ ++++RR++L+GTP+
Sbjct: 412 GRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPL 471
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKANERLEQLIG 380
QN+L+EY +V+F+ + +LG+ +EFR ++ PI GQ DS D K +R L
Sbjct: 472 QNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVRVMK--KRAHILYE 529
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS-DAVRRTMKGGENTKL 439
++ C+ R+ L+K+LP K E V+ ++MT +Q +LY + V + +GG K
Sbjct: 530 MLAGCVQRKDYTALTKFLPPKHEYVLAVRMTPIQCKLYQYYLDHLTGVGNSSEGGRG-KA 588
Query: 440 GMTALSSITSLKKLCNHP-DLVMDKIQTGADGF--ENAMN 476
G L ++ HP L +D I G+ E++M+
Sbjct: 589 GAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMD 628
Score = 341 (125.1 bits), Expect = 8.6e-61, Sum P(2) = 8.6e-61
Identities = 78/197 (39%), Positives = 121/197 (61%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNY-TQTLD---LFERLSK-LRGYKYVRLDGSM 548
E+ K++V L + + +D + L S T+ D +++ K LR Y RLDGS
Sbjct: 753 EIGDKVLVFSQSLISLDLI-EDFLELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGST 811
Query: 549 TIKKRAKVVETFNKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
T + R K E FN +N +F++S+KAG G+NL+ ANR+++FD WNP+ D Q++ R
Sbjct: 812 TAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFR 871
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ 666
V+R GQ KP +VYRFL+ G++E+K+ RQ K++LS VVD ++ V RHF+M+EL L+
Sbjct: 872 VYRFGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVD-QQQVERHFTMNELTELYT 930
Query: 667 LEENTISDTHDKIKCSR 683
E + + D + + K R
Sbjct: 931 FEPDLLDDPNSEKKKKR 947
Score = 162 (62.1 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 55/188 (29%), Positives = 91/188 (48%)
Query: 96 REGARKALH-DPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREG 154
RE R+ + + +P + T L + K + +QVH + V+ L+PHQ +G
Sbjct: 233 REKLREVIEIEDASPTKCPITTKLVLDEDEETK--EPLVQVHR--NMVIK--LKPHQVDG 286
Query: 155 VKFMYEC----VTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAII 210
V+FM++C V + GCI+A MGLGKTLQ ++ + T+L L A++
Sbjct: 287 VQFMWDCCCESVKKTKKSPGSGCILAHCMGLGKTLQVVSFLHTVLLCDKLD---FSTALV 343
Query: 211 VAPSSLVKNWCNEITKWLGGRVAALPIDGGSK-AEIDN-KLNSFMQTYGRRPVNPILVIS 268
V P + NW NE KW G ++ S+ A + + S+M + +++I
Sbjct: 344 VCPLNTALNWMNEFEKWQEGLKDDEKLEKVSELATVKRPQERSYMLQRWQED-GGVMIIG 402
Query: 269 YETFRSHA 276
YE +R+ A
Sbjct: 403 YEMYRNLA 410
Score = 49 (22.3 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 455 NHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL-LIELSAKLMVLDTMLAVIKMTT 513
N+P + + ++ A N + P Y ++E S K+++L +L + +
Sbjct: 696 NNPSVSLKLEESKAASSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAE-EI 754
Query: 514 DDKIVLVSNYTQTLDLFERLSKL 536
DK+++ S +LDL E +L
Sbjct: 755 GDKVLVFSQSLISLDLIEDFLEL 777
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 340 (124.7 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE-RLSKLRGYKYVRLDGSMTIKK 552
E S KL V+ +L + K + +L S Q LD+ E L L Y R+DGS +I
Sbjct: 622 EKSGKLKVIRALLTLWKKQ-GHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIAL 680
Query: 553 RAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612
R +V+ FNK +F+L+++ GG G+NL GA+R+++FDPDWNP+ D QA R WR GQ
Sbjct: 681 RQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQ 740
Query: 613 KKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTI 672
KK VYR ++ G+IEEK+ RQ K+ L++ ++ + R F M++L LF L +N
Sbjct: 741 KKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILK-DPKQRRFFKMTDLHDLFTLGDNKT 799
Query: 673 SDT 675
T
Sbjct: 800 EGT 802
Score = 279 (103.3 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 67/197 (34%), Positives = 112/197 (56%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
IL+ +Y R + ++ E G + DEGH+++N +S+ + ++ R++LSGTPIQ
Sbjct: 415 ILITTYAGLRIYGDLILPREWGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQ 474
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E ++L FV G LGT F+ Q+ PI G + AS+ + A + L +++
Sbjct: 475 NNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACMLRDLIS 534
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
L+RR ++ LP K+EQV+ K+T LQ++ Y + ++ +++ + G K M
Sbjct: 535 PYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILNG----KRQM-- 588
Query: 444 LSSITSLKKLCNHPDLV 460
L I L+K+CNHPDLV
Sbjct: 589 LYGIDILRKICNHPDLV 605
Score = 135 (52.6 bits), Expect = 1.0e-60, Sum P(3) = 1.0e-60
Identities = 38/107 (35%), Positives = 57/107 (53%)
Query: 147 LRPHQREGVKFMYECVTGV---RIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203
+RPH ++ CV + ++A G I+ DEMGLGKT+Q ++ + +L G KP
Sbjct: 273 IRPHL---FRYQVTCVQWLWELYCQEAGG-IIGDEMGLGKTIQIVSFLSSLHHSGKFQKP 328
Query: 204 LIDKAIIVAPSSLVKNWCNEI-TKWLGGRVAALPIDG-GSKAEIDNK 248
A+IV P++L+K W NE T W RV L G G +A + +
Sbjct: 329 ----ALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKR 371
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 373 (136.4 bits), Expect = 9.5e-60, Sum P(3) = 9.5e-60
Identities = 98/298 (32%), Positives = 164/298 (55%)
Query: 134 QVHVVVDPVLSNI-LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMW 192
++ ++ P N L HQREGVKFMY ++ +G I+ D+MGLGKT+Q I +
Sbjct: 125 EIPIIHVPASINCRLLEHQREGVKFMYNLY-----KNNHGGILGDDMGLGKTIQTIAFLA 179
Query: 193 TLL-RQGPLAKPLI---DKA--IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEID 246
+ + G + + DK +I+ PSS++ NW +E ++W ++ G ++ I
Sbjct: 180 AVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSV-YHGSNRDMIL 238
Query: 247 NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL 306
KL + R V +LV S++TFR VL +V+ DE HRLKN +S+ Y+A
Sbjct: 239 EKLKA-------RGVE-VLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEAC 290
Query: 307 MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDA 366
+ +K K+R+ L+GT +QN + E F+L +V G LGT + FR Y+ P+ GQ + A +
Sbjct: 291 LEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPER 350
Query: 367 ERTKANERLEQLIGIVNRCLIRRTSALLSKYLPV-KTEQVVCIKMTDLQKELYTNLIK 423
A++R + L ++ + ++RRT +L + K + VV +M+ LQ+ +Y +I+
Sbjct: 351 FVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQ 408
Score = 327 (120.2 bits), Expect = 9.5e-60, Sum P(3) = 9.5e-60
Identities = 86/257 (33%), Positives = 138/257 (53%)
Query: 444 LSSITSLKKLCNHPDLVM----DKIQTGADGFENAMNILPTGY--AASYKSGKLLIELS- 496
L + L+++ NH +L+ D+ + E + T + K ++LS
Sbjct: 464 LPCLMKLQQISNHLELIKPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSD 523
Query: 497 ----AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKK 552
K+ L+ ++A ++ DKI+L S + LD+ E+ +GY + RLDGS
Sbjct: 524 VKHCGKMRALEKLMASW-ISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNL 582
Query: 553 RAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612
R +V+ FN + ++ +F++S+KAGG GLNL+ ANR+V+FDP+WNP++D QA R +R GQ
Sbjct: 583 RQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQ 642
Query: 613 KKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLE---- 668
K+ V+R LS GS+EE + RQ +K+ LS+ V + + R+F + FQ E
Sbjct: 643 KRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMET-RYFEGVQDCKEFQGELFGI 701
Query: 669 ENTISDTHDKIKCSRCV 685
N D DK+ S V
Sbjct: 702 SNLFRDLSDKLFTSDIV 718
Score = 38 (18.4 bits), Expect = 9.5e-60, Sum P(3) = 9.5e-60
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 26 PVKKEKRSCTSRKPLGSVD-NEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTG 84
P K E + S+ + D NED+ + +EE+ E + R I F P L+
Sbjct: 56 PSKHESK--ISKTQVEDFDHNEDDHKRNIKFDEEEVDEDDE--RSI---EFGRPGLSRAE 108
Query: 85 GGYST--KALGVRREGARKALHDPTAPNALVL 114
YS + L + G +H P + N +L
Sbjct: 109 FDYSGPYEPLMLSSIGEIPIIHVPASINCRLL 140
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 333 (122.3 bits), Expect = 3.7e-59, Sum P(3) = 3.7e-59
Identities = 68/175 (38%), Positives = 111/175 (63%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK-LRGYKYVRLDGSMTIKKRA 554
S K+ V+ ++L + K T K +L + + LD+ E+ K L G+ Y R+DG+ I+ R
Sbjct: 735 SGKMQVVRSLLELWK-ETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHRQ 793
Query: 555 KVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKK 614
+V+ FNK + +F+L++K GG G+NL GA+R++++DPDWNP+ D QA R WR GQK+
Sbjct: 794 TMVDEFNKDPDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKR 853
Query: 615 PCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+YR ++ G+IEEK+ RQ K+ L++ ++ + + F +S+L LF L E
Sbjct: 854 DVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILK-DPKQRQTFQLSDLYDLFALGE 907
Score = 278 (102.9 bits), Expect = 3.7e-59, Sum P(3) = 3.7e-59
Identities = 68/210 (32%), Positives = 113/210 (53%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
+LV +Y +S+AS+L E G + DEGH+++N + L+ R++LSGTP+Q
Sbjct: 528 VLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQ 587
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E +SL FV LGT FR Q+E PI +G + AS+ + A + E L ++
Sbjct: 588 NNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDAIS 647
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
L++R ++ LP K+EQV+ ++T Q++ Y + S+ ++ ++G G
Sbjct: 648 PYLLQRFKIDVAADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQSILRGRRQVLYG--- 704
Query: 444 LSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
+ L+K+CNHPDL K+ + N
Sbjct: 705 ---VDILRKICNHPDLQNHKLLYAKPNYGN 731
Score = 133 (51.9 bits), Expect = 3.7e-59, Sum P(3) = 3.7e-59
Identities = 35/104 (33%), Positives = 55/104 (52%)
Query: 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
+L +Q+ GV++M+E + G I+ DEMGLGKT+Q I + L L KP+I
Sbjct: 397 LLFDYQKTGVQWMWELH-----QQQVGGIIGDEMGLGKTIQAIAFLAGLHYSKRLTKPII 451
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNK 248
+V P++++K W NE +W RV+ L G I ++
Sbjct: 452 ----VVCPATVMKQWVNEFHRWWPPFRVSILHTSGSGMVNIKSE 491
Score = 39 (18.8 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 74 PFKVPILNYTGGGYSTKALGVRREGARK 101
PF+V IL+ +G G + ++ E +R+
Sbjct: 472 PFRVSILHTSGSGM----VNIKSESSRE 495
Score = 39 (18.8 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 261 VNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRV 315
++P+L +T LH+ +VG ++ DE K ++ + L GL +R+
Sbjct: 394 IHPLLFDYQKTGVQWMWELHQQQVGGIIGDEMGLGKTIQAIAF--LAGLHYSKRL 446
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 363 (132.8 bits), Expect = 2.2e-58, Sum P(2) = 2.2e-58
Identities = 89/278 (32%), Positives = 154/278 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + ++ I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 386 KNDLIIWIRLRPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 439
Query: 461 MDK----IQTGADGF----ENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + G+ F EN + + L+E S K++ L +L ++
Sbjct: 440 SARARHLLSLGSVKFSVQGENEGEDASDVDHIDHVTDDTLMEESGKMIFLIELLRRLRDE 499
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S Q L++ ERL K R +K +R+DG++T + +R K + F + + +F+L
Sbjct: 500 GHQTLVF-SQSRQILNIIERLLKNRHFKILRVDGTVTHLVEREKRIHLFQQNKDYSVFLL 558
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 559 TTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENIVVYRLITCGTVEEKI 618
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ K +L +++ R+F+ ELR LF +E+
Sbjct: 619 YRRQVFKDSLIRQTTGDKKNPFRYFTKQELRELFTIED 656
Score = 325 (119.5 bits), Expect = 2.2e-58, Sum P(2) = 2.2e-58
Identities = 84/260 (32%), Positives = 132/260 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK 202
L N L HQ+EGV F+Y R G I+AD+MGLGKT+Q I + G
Sbjct: 114 LHNQLFEHQKEGVAFLYSLYRDGR----KGGILADDMGLGKTVQIIAFL-----SGMFDA 164
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
L+ +++ P++L+ W E KW G + G SK E LN Q G
Sbjct: 165 TLVSHVLLIMPTNLISTWIKEFVKWTPG-MRVKTFHGSSKDERTRNLNRIQQRNG----- 218
Query: 263 PILVISYETFRSH---ASVLHKNEV--GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+++ +Y+ ++ S L+ E V+ DE H++K +++ + A+ R+LL
Sbjct: 219 -VIITTYQMLINNWQQLSSLNGQEFVWDYVILDEAHKIKTSSTKSAICARAVPARNRILL 277
Query: 318 SGTPIQNDLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
+GTPIQN+L E +SL F QG +LGT + F+ +YE PI+R ++ A+ E+ + E
Sbjct: 278 TGTPIQNNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGEKALGLKISE 337
Query: 377 QLIGIVNRCLIRRTSALLSK 396
L+ I+ +RRT + K
Sbjct: 338 NLMAIIKSHFLRRTKEEVQK 357
>UNIPROTKB|G4N791 [details] [associations]
symbol:MGG_06447 "SNF2 family ATP-dependent
chromatin-remodeling factor snf21" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 RefSeq:XP_003717120.1 ProteinModelPortal:G4N791
EnsemblFungi:MGG_06447T0 GeneID:2684602 KEGG:mgr:MGG_06447
Uniprot:G4N791
Length = 1592
Score = 582 (209.9 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 170/542 (31%), Positives = 275/542 (50%)
Query: 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR- 196
V +P+ NI + HQ EGV+FM+ V V + + GC++A MGLGKT+Q I L+ +
Sbjct: 565 VPEPIAQNI-KDHQIEGVRFMWNQV--VNDDRSQGCLLAHTMGLGKTVQVICLLVAIQHA 621
Query: 197 -QGP-------LAKPLI-DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG-GSKAEID 246
Q P + K L + +++ P L+ NW +E ++W+ P D G +ID
Sbjct: 622 AQSPDPSVVSQIPKELQRSQTLVLCPPGLLNNWLDEFSRWVE------PYDALGRIYKID 675
Query: 247 NKLNSFMQTYGRRP-VNP--ILVISYETFRSHASVLHKN------EV-GLVLCDEGHRLK 296
+++ + + P VN IL++ Y FRS S E+ +V+ DE H +K
Sbjct: 676 SEIPAEARAASIEPWVNTGGILLMGYSLFRSLVSSGDSKMQTWLTELPSIVVADEAHTIK 735
Query: 297 NCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPIL 356
N S+ +A+ KAK ++ ++G+P+ N + +YFS++++V LG +EF + +PI
Sbjct: 736 NERSKISEAMANFKAKAKIAMTGSPLANSVGDYFSMINWVAPNYLGPRKEFTHFFASPIQ 795
Query: 357 RGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKE 416
G +S AE+ +A + L+ L V+ + R T+ L LP K E V+ + +T+ QK
Sbjct: 796 EGLFVDSSPAEKRRAMKLLKALKDTVSPKVHRMTTTALRGQLPEKREYVIVVPLTEYQKS 855
Query: 417 LYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMN 476
Y ++ A R + T + + L I L L HP + + A+ ++ +
Sbjct: 856 AYEVYMRWVATR-----ADATTVSL--LGYICQLSTLLVHPRIFLQYFVELANEYDKDVR 908
Query: 477 ILPTGYAAS-YKSGKLLIEL----------SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQ 525
+G + G L+ E+ S K+ VL +L K DK+++ S+
Sbjct: 909 KSDSGREIPRHVIGNLIAEVNRRDIHNLDHSYKITVLTRILDEAKRV-GDKVLIFSSRIP 967
Query: 526 TLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA 585
L+ E L K++ Y RLDG I R V FN ++E ++++S+ AGG GLN+ GA
Sbjct: 968 VLNFLENLMKMQKRPYSRLDGETKISTRQASVANFNANNDE-VYLISTNAGGVGLNIQGA 1026
Query: 586 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645
NR+VM D W PAN+ QA+ R +R GQ KP +VY + G+ E K+ K L+S V
Sbjct: 1027 NRVVMMDFQWQPANEQQAIGRAYRIGQTKPVYVYWLIVGGTYEPKLHAAAIFKTQLASRV 1086
Query: 646 VD 647
VD
Sbjct: 1087 VD 1088
Score = 43 (20.2 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 46 EDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGA-RKALH 104
E++PN + EN + + L ++ +L+ T VRRE A R L
Sbjct: 364 EEDPNFRSKDVVTVRQAFENTVYEKLETEWRADLLSRTSEPERVVTRRVRREKAPRVVLE 423
Query: 105 D 105
D
Sbjct: 424 D 424
Score = 41 (19.5 bits), Expect = 3.7e-58, Sum P(3) = 3.7e-58
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 1 RRSLAPSQLSKRSPEDSP-GIKTFPPPVKKEKRSCTSRK 38
+R +AP+QLS+ P I T +K S +RK
Sbjct: 137 KRRIAPTQLSETPVHAEPVRILTEADVIKHADASSINRK 175
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 369 (135.0 bits), Expect = 3.7e-58, Sum P(2) = 3.7e-58
Identities = 91/278 (32%), Positives = 154/278 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + ++ I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 342 KNDLIIWIRLVPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 395
Query: 461 MDK----IQTGADGFENAMNILPTGYAA----SYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + GA F I + S + L+E S K+ L +L ++
Sbjct: 396 SARACQLLNLGAVRFSVQDEIEGEDSSGVDHIDQVSDETLMEESGKMTFLMDLLKRLRDE 455
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S Q L++ ERL K R +K +R+DG++T + +R K + F + + +F+L
Sbjct: 456 GHQTLVF-SQSRQILNILERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLL 514
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A+R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 515 TTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 574
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ K +L +++ R+FS ELR LF +E+
Sbjct: 575 YRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTIED 612
Score = 316 (116.3 bits), Expect = 3.7e-58, Sum P(2) = 3.7e-58
Identities = 83/260 (31%), Positives = 132/260 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK 202
L N L +Q+EGV F+Y R G I+AD+MGLGKT+Q I + G
Sbjct: 70 LHNQLFEYQKEGVAFLYSLYRDGR----RGGILADDMGLGKTVQIIAFL-----SGMFDA 120
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
L++ +++ P+SL+ W E KW G + G SK E L+ Q G
Sbjct: 121 SLVNHVLLIMPTSLISTWLREFVKWTPG-MRVKTFHGPSKDERTRNLSRIQQRNG----- 174
Query: 263 PILVISYETFRSH---ASVLHKNEV--GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+++ +Y+ ++ S L+ E V+ DE H++K +++ + A+ R+LL
Sbjct: 175 -VIITTYQMLINNWQQLSSLNGREFVWDYVILDEAHKIKTSSTKSAICARAIPARNRILL 233
Query: 318 SGTPIQNDLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
+GTPIQN+L E +SL F QG +LGT + F+ +YE PI R ++ A+ E+ + E
Sbjct: 234 TGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISE 293
Query: 377 QLIGIVNRCLIRRTSALLSK 396
L+ I+ +RRT + K
Sbjct: 294 NLMAIIKPYFLRRTKEEVQK 313
Score = 37 (18.1 bits), Expect = 7.5e-29, Sum P(2) = 7.5e-29
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 17 SPG--IKTFPPPVKKEKRSCTSR 37
+PG +KTF P K E+ SR
Sbjct: 146 TPGMRVKTFHGPSKDERTRNLSR 168
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 370 (135.3 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 90/290 (31%), Positives = 161/290 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + +V I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 365 KNDLIVWIRLLPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 418
Query: 461 MDK----IQTGADGF----ENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + G F EN + + + K LI+ S K++ L ++L ++
Sbjct: 419 SARACRLLNLGTATFSAQDENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDE 478
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S + L++ ERL K + +K +R+DG++T + +R K ++ F + +F+L
Sbjct: 479 GHQTLVF-SQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLL 537
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 538 TTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 597
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKC 681
+RQ K +L +++ R+F+ EL+ LF + + S T +++C
Sbjct: 598 YRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTVGDLQKSATQMQLQC 647
Score = 311 (114.5 bits), Expect = 1.0e-57, Sum P(2) = 1.0e-57
Identities = 78/247 (31%), Positives = 129/247 (52%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
HQ+EG+ F+Y R G I+AD+MGLGKT+Q I + G L++ +
Sbjct: 100 HQKEGIAFLYSLYKDGR----KGGILADDMGLGKTVQIIAFL-----SGMFDASLVNHVL 150
Query: 210 IVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISY 269
++ P++L+ W NE KW G + G SK+E L Q G +++ +Y
Sbjct: 151 LIMPTNLINTWVNEFAKWTPG-MRVKTFHGSSKSERTRSLTRIQQRNG------VVITTY 203
Query: 270 ETFRSH----ASVLHKNEV-GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
+ ++ AS + V V+ DE H++K+ +++ + A R+LL+GTP+QN
Sbjct: 204 QMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQN 263
Query: 325 DLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
+L E +SL F QG +LGT + F+ +YE PI+R ++ A+ E+ + E L+ I+
Sbjct: 264 NLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIK 323
Query: 384 RCLIRRT 390
+RRT
Sbjct: 324 PYFLRRT 330
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 321 (118.1 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 84/232 (36%), Positives = 125/232 (53%)
Query: 444 LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLD 503
L I L+K+CNHPDL+ D N P Y +SGK+ + L+
Sbjct: 617 LFGIDILRKICNHPDLL--------DRDTKRHN--PD-YGDPKRSGKMQVVKQLLLLWHK 665
Query: 504 TMLAVIKMTTDDKIV-LVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK 562
+ T +++ ++ + T D LS L Y+R+DG+ IK R +V+ FN
Sbjct: 666 QGYKALLFTQSRQMLDILEEFISTKD--PDLSHLN---YLRMDGTTNIKGRQSLVDRFNN 720
Query: 563 TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFL 622
S + +F+L+++ GG G+NL GANR+++FDPDWNP+ D QA R WR GQK+ +YR +
Sbjct: 721 ESFD-VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLM 779
Query: 623 STGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLE-ENTIS 673
GSIEEK+ RQ K+ L++ ++ + R F + EL LF L EN S
Sbjct: 780 VGGSIEEKIYHRQIFKQFLTNRILT-DPKQKRFFKIHELHDLFSLGGENGYS 830
Score = 276 (102.2 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 67/197 (34%), Positives = 105/197 (53%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
IL+ +Y R H+ L K + + DEGH+++N +S+ LK R++LSGTPIQ
Sbjct: 443 ILITTYVGLRIHSDKLLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQ 502
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E +SL F+ G LGT F++Q+ PI G + A++ + + L +++
Sbjct: 503 NNLTELWSLFDFIFPGKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLIS 562
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
L+RR A ++K LP K E V+ K+T Q+ Y + S + + G N G
Sbjct: 563 PYLLRRVKADVAKDLPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFG--- 619
Query: 444 LSSITSLKKLCNHPDLV 460
I L+K+CNHPDL+
Sbjct: 620 ---IDILRKICNHPDLL 633
Score = 129 (50.5 bits), Expect = 2.2e-57, Sum P(3) = 2.2e-57
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 145 NILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPL 204
++L +Q+ V+++YE + G I+ DEMGLGKT+Q I + L G L P+
Sbjct: 295 SLLFNYQKTCVQWLYELY-----QQNCGGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPV 349
Query: 205 IDKAIIVAPSSLVKNWCNEITKW 227
+ IV P++++K WCNE W
Sbjct: 350 L----IVCPATVMKQWCNEFQHW 368
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 366 (133.9 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 91/278 (32%), Positives = 154/278 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + ++ I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 364 KNDLIIWIRLVPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 417
Query: 461 MDK----IQTGA----DGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + G DG E + P + L+E S K++ L +L ++
Sbjct: 418 SARACCLLNLGTFSAQDGNEGEDS--PDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDE 475
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S Q L++ ERL K R +K +R+DG++T + +R K + F + + +F+L
Sbjct: 476 GHQTLVF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLL 534
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 535 TTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 594
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ K +L +++ R+FS ELR LF +E+
Sbjct: 595 YRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIED 632
Score = 312 (114.9 bits), Expect = 2.3e-57, Sum P(2) = 2.3e-57
Identities = 82/260 (31%), Positives = 129/260 (49%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK 202
L N L HQ+EG+ F+Y R G I+AD+MGLGKT+Q I + G
Sbjct: 92 LHNQLFEHQKEGIAFLYSLYRDGR----KGGILADDMGLGKTVQIIAFL-----SGMFDA 142
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
L++ +++ P++L+ W E KW G + G SK E LN Q G
Sbjct: 143 SLVNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNG----- 196
Query: 263 PILVISYETFRSH---ASVLHKNEV--GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+++ +Y+ ++ S E V+ DE H++K +++ + A R+LL
Sbjct: 197 -VIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLL 255
Query: 318 SGTPIQNDLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
+GTPIQN+L E +SL F QG +LGT + F+ +YE PI R ++ A+ E+ + E
Sbjct: 256 TGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISE 315
Query: 377 QLIGIVNRCLIRRTSALLSK 396
L+ I+ +RRT + K
Sbjct: 316 NLMAIIKPYFLRRTKEDVQK 335
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 366 (133.9 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 90/278 (32%), Positives = 154/278 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + ++ I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 364 KNDLIIWIRLVPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 417
Query: 461 MDK----IQTGADGFENAMNILPTGYA----ASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + GA F I + S L+E S K++ L +L ++
Sbjct: 418 SARACGLLNLGAAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDE 477
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S + L++ ERL K R +K +R+DG++T + +R K + F + + +F+L
Sbjct: 478 GHQTLVF-SQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLL 536
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A+R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 537 TTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 596
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ K +L +++ R+FS ELR LF +E+
Sbjct: 597 YRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTIED 634
Score = 311 (114.5 bits), Expect = 2.8e-57, Sum P(2) = 2.8e-57
Identities = 82/260 (31%), Positives = 131/260 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK 202
L N L +Q+EG+ F+Y R G I+AD+MGLGKT+Q I + G
Sbjct: 92 LHNQLYEYQKEGIAFLYSLYRDGR----RGGILADDMGLGKTVQIIAFL-----SGMFDA 142
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVN 262
L++ +++ P+SL+ W E KW G + G SK E L Q G
Sbjct: 143 SLVNHVLLIMPTSLISTWLREFVKWTPG-MRVKTFHGPSKDERTRNLCRIQQRNG----- 196
Query: 263 PILVISYETFRSH---ASVLHKNEV--GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+++ +Y+ ++ S L+ E V+ DE H++K+ +++ + A R+LL
Sbjct: 197 -VIITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPASNRILL 255
Query: 318 SGTPIQNDLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
+GTPIQN+L E +SL F QG +LGT + F+ +YE PI R ++ A+ E+ + E
Sbjct: 256 TGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISE 315
Query: 377 QLIGIVNRCLIRRTSALLSK 396
L+ I+ +RRT + K
Sbjct: 316 NLMAIIKPYFLRRTKEEVQK 335
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 370 (135.3 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 90/292 (30%), Positives = 164/292 (56%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + +V I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 364 KNDLIVWIRLVPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 417
Query: 461 MDK----IQTGADGF----ENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + G F EN + + S L++ S K++ L +A+++
Sbjct: 418 SARACHLLNLGTVTFSAEDENEQEDASNMGSIDHLSDNALMQESGKMIFL---MALLERL 474
Query: 513 TDD--KIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIF 569
D+ + ++ S Q L++ ERL K + +K +R+DG++T + +R K ++ F + +F
Sbjct: 475 QDEGHQTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVF 534
Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629
+L+++ GG GL L A+R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EE
Sbjct: 535 LLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEE 594
Query: 630 KMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKC 681
K+ +RQ K +L +++ R+F+ EL+ LF + + S T +++C
Sbjct: 595 KIYRRQVFKDSLIRQTTGDKKNPFRYFTKQELKELFTVGDLLNSATQMQLQC 646
Score = 305 (112.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 78/247 (31%), Positives = 127/247 (51%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
HQ+EG+ F+Y R G I+AD+MGLGKT+Q I + G L++ +
Sbjct: 99 HQKEGIAFLYSLYKNGR----KGGILADDMGLGKTVQIIAFL-----SGMFDASLVNHVL 149
Query: 210 IVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISY 269
++ P++L+ W E KW G + G SK E L Q G +++ +Y
Sbjct: 150 LIMPTNLINTWVKEFAKWTPG-MRVKTFHGSSKNERIRNLTRIQQRNG------VVITTY 202
Query: 270 ETFRSH----ASVLHKNEV-GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
+ ++ AS + V V+ DE H++K+ +++ + A R+LL+GTPIQN
Sbjct: 203 QMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQN 262
Query: 325 DLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
+L E +SL F QG +LGT + F+ +YE PI+R ++ A+ E+ + E L+ I+
Sbjct: 263 NLQELWSLFDFACQGSLLGTLKTFKMEYENPIIRAREKDATPGEKALGFKMSENLMEIIK 322
Query: 384 RCLIRRT 390
+RRT
Sbjct: 323 PYFLRRT 329
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 317 (116.6 bits), Expect = 4.9e-57, Sum P(4) = 4.9e-57
Identities = 76/210 (36%), Positives = 120/210 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSK--------- 535
+Y SG LI S K+ + +L + D+I+L S TL+L E K
Sbjct: 951 NYVSG--LISNSPKMEIFFCILKE-SLNLGDRILLFSQSLLTLNLLEVYLKSSYVPGSNQ 1007
Query: 536 --LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+ Y RLDGS + ++R ++V FN SN +F++S++AG G+NL GANR+++FD
Sbjct: 1008 LWTKNSSYFRLDGSTSSQERERLVNEFNANSNVKLFLISTRAGSLGINLTGANRVIIFDA 1067
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD-CEEDV 652
WNP +D QA+ R++R GQ KPCFVYR + +E+K+ RQ K+ +S +VD C +
Sbjct: 1068 SWNPCHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVDECNPEA 1127
Query: 653 ARHFSMSELRSLFQLEENTISDTHDKIKCS 682
H SM ++ +L Q + ++ DT +++ S
Sbjct: 1128 --HLSMKDITNLCQ-DYDSDEDTVEEVNKS 1154
Score = 276 (102.2 bits), Expect = 4.9e-57, Sum P(4) = 4.9e-57
Identities = 72/191 (37%), Positives = 104/191 (54%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
LV+CDEGHR+KN + AL ++ +RR++L+G P+QN+LLEY+ +V FV LGT
Sbjct: 565 LVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRT 624
Query: 346 EFRKQYETPILRGQ--DSCASDAE--RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVK 401
EF +E PI GQ DS D + R +A+ L+G V R R+ +L LP K
Sbjct: 625 EFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQR----RSHTVLQLTLPQK 680
Query: 402 TEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV- 460
E V+ +KMT Q++LY + +D VR TK L + K+ NHPD++
Sbjct: 681 YEYVILVKMTAFQRKLYDTFM-TDVVR--------TKAFPNPLKAFAVCCKIWNHPDVLY 731
Query: 461 --MDKIQTGAD 469
+ K +T D
Sbjct: 732 NFLKKCETDLD 742
Score = 142 (55.0 bits), Expect = 4.9e-57, Sum P(4) = 4.9e-57
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYE-CVTGVRI---ED 169
+Y P + ++ + + + + + P ++ +++PHQ GV+F+Y+ + R
Sbjct: 358 IYNVPDENGQVVVNMAHPEGEETLYLAPQIAKVIKPHQIGGVRFLYDNIIESTRRYNKSS 417
Query: 170 AYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWL 228
+GCI+A MGLGKTLQ ++ LR AK ++ V P + ++NW +E W+
Sbjct: 418 GFGCILAHSMGLGKTLQVVSFCDIFLRHTS-AKTVL----CVMPINTLQNWLSEFNMWI 471
Score = 42 (19.8 bits), Expect = 4.9e-57, Sum P(4) = 4.9e-57
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 15 EDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSE 62
ED K +EK++ RK + V NE+ ++ + E SE
Sbjct: 178 EDQAANKKLSMAAAEEKKNSHLRKNIRDVMNENNLDTTTLAAQREESE 225
Score = 40 (19.1 bits), Expect = 4.5e-28, Sum P(4) = 4.5e-28
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 557 VETFNKTSNEFIFMLSSKA 575
+ETF+K N+ +F + + +
Sbjct: 786 IETFSKAENQTLFNIPASS 804
Score = 38 (18.4 bits), Expect = 1.3e-56, Sum P(4) = 1.3e-56
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 6 PSQLSKRSPEDSPGI---KTFPPPVKKEKRSCT-SRKPLGSVDNEDEPNSKLPMTKEEMS 61
P ++ + PE S + + P + K + K S + N KL M E
Sbjct: 135 PVKMPEYCPETSQPVEPDRVINPLAEVAKNTVPYGHKRKNSAGEDQAANKKLSMAAAEEK 194
Query: 62 EHENLIRQI 70
++ +L + I
Sbjct: 195 KNSHLRKNI 203
Score = 38 (18.4 bits), Expect = 7.2e-28, Sum P(4) = 7.2e-28
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 477 ILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQT 526
++PT A ++++ ++MVL + + KI+ + +T
Sbjct: 1346 VIPTNSA---DKANIILKAGQRVMVLKSAKGIYMQLDSGKIIAIRTTAKT 1392
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 278 (102.9 bits), Expect = 5.3e-56, Sum P(3) = 5.3e-56
Identities = 65/196 (33%), Positives = 105/196 (53%)
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+ E + S L + LV+CDEGH++KN ++ L + KRR++L+G P+QN+L
Sbjct: 440 VRQEAYSLIRSALLEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNL 499
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNR 384
LEYF ++ FV LGT + F ++E PI GQ DS D + A +R L+ +V
Sbjct: 500 LEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPDDVKI--ALQRTHVLVELVKG 557
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTAL 444
+ RRT LL K LP E V+ ++ + +Q++LY N + + + N L
Sbjct: 558 FVQRRTHHLLKKILPESKEYVLLLRKSQIQRQLYRNFV----LWAKNEIAANNDAVFNPL 613
Query: 445 SSITSLKKLCNHPDLV 460
+ ++ K+ NHPD++
Sbjct: 614 MAFSACSKIWNHPDIL 629
Score = 266 (98.7 bits), Expect = 5.3e-56, Sum P(3) = 5.3e-56
Identities = 69/209 (33%), Positives = 109/209 (52%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTD--DKIVLVSNYTQTLDLFERLSK---LRGY- 539
Y+ G ++E K+++ L ++ +T +KI++ S LD+ E + K +RG
Sbjct: 768 YQEG--VLENGYKIVI---SLEILDESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKD 822
Query: 540 ----------KYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLV 589
Y+RLDG+ + R K++ FN +F++S++AG G+NL+ ANR +
Sbjct: 823 GPGQRWEKNRNYLRLDGTTSGADREKLINRFNSEPGLSLFLISTRAGSLGINLVSANRCI 882
Query: 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
+ D WNP +D QA+ RV+R GQ+K FVYR + S+E + RQ K L VVD +
Sbjct: 883 IIDACWNPCHDAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVVD-D 941
Query: 650 EDVARHFSMSELRSLFQLEENTISDTHDK 678
V + S EL +L +E HDK
Sbjct: 942 AQVDANISQKELETLLMYDEAQ-DVNHDK 969
Score = 175 (66.7 bits), Expect = 5.3e-56, Sum P(3) = 5.3e-56
Identities = 43/143 (30%), Positives = 76/143 (53%)
Query: 143 LSNILRPHQREGVKFMY----ECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQG 198
L+++L+PHQ G++FMY E + + D +GCI+A MGLGKT+Q IT LR
Sbjct: 252 LTHVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHSMGLGKTIQVITFSEIFLR-A 310
Query: 199 PLAKPLIDKAIIVAPSSLVKNWCNEITKWL------GGRVAALPID--GGSKAEIDNKLN 250
AK K +++ P + ++NW +E KW+ G R+ + + G D ++N
Sbjct: 311 TKAK----KVLVIVPINTIQNWYSEYDKWIPKFSDTGDRIRSFEVFLLGDGVKTFDQRVN 366
Query: 251 SFMQTYGRRPVNPILVISYETFR 273
++ + + ++++ Y+ FR
Sbjct: 367 -LIEQWDQ--TGGVMLVGYDMFR 386
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 329 (120.9 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 71/202 (35%), Positives = 117/202 (57%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+V+CDEGHR+KNC++ T QAL ++++RRV+L+G P+QN+L+EY+ +V FV LGT Q
Sbjct: 153 VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 212
Query: 346 EFRKQYETPILRGQ--DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
EF +E PIL GQ DS D + + L ++ + RR +L +LP K E
Sbjct: 213 EFSNMFERPILNGQCIDSTPQDVRLMRYRSHV--LHSLLEGFVQRRGHTVLKIHLPAKEE 270
Query: 404 QVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
V+ ++++ +Q++LYT + D R G + LG+ L + K+ NHPD++ +
Sbjct: 271 NVILVRLSKIQRDLYTQFM--DRFRDC---GSSGWLGLNPLKAFCVCCKIWNHPDVLYEA 325
Query: 464 IQTGADGFENAMNILPTGYAAS 485
+Q + E +++ G A +
Sbjct: 326 LQKESLANEQDLDVEELGSAGT 347
Score = 292 (107.8 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 58/136 (42%), Positives = 90/136 (66%)
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRLVMFDP 593
+R Y RLDGS +R +++ FN SN ++F+LS++AG G+NLIGANR+V+FD
Sbjct: 471 VRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDA 530
Query: 594 DWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVA 653
WNP +D QA+ RV+R GQKKPC++YR ++ ++E+K+ RQ K+ +S VVD + +
Sbjct: 531 SWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD-DLNPM 589
Query: 654 RHFSMSELRSLFQLEE 669
+F+ E+ +L E
Sbjct: 590 LNFTRKEVENLLHFVE 605
Score = 90 (36.7 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
MGLGKTLQ I+ + L R P AK ++ AI+ P + ++NW E WL ALP D
Sbjct: 1 MGLGKTLQVISFIDVLFRHTP-AKTVL--AIV--PVNTLQNWLAEFNMWLPPP-EALPAD 54
Score = 44 (20.5 bits), Expect = 8.9e-56, Sum P(4) = 8.9e-56
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE 531
+Y++G ++E S K+++L ++ + DKI++ S TL L E
Sbjct: 405 NYQTG--VLENSPKMVLLFHLIEE-SVKLGDKILVFSQSLSTLALIE 448
Score = 40 (19.1 bits), Expect = 1.4e-25, Sum P(4) = 1.4e-25
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 345 QEFRKQYETPILR-GQDSCASD 365
QEFR+++E + R G D D
Sbjct: 136 QEFRREFEKALCRPGPDVVICD 157
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 351 (128.6 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 79/212 (37%), Positives = 124/212 (58%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKR 553
E S K+ V+ +L V K +++L S Q LD+ E Y Y R+DG +K+R
Sbjct: 724 ERSGKMKVVAEVLKVWKQQ-GHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQR 782
Query: 554 AKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613
+++ FN + + F+F+L++K GG G NL GANR+++FDPDWNP+ND QA R WR GQK
Sbjct: 783 MALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQK 842
Query: 614 KPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE---- 669
K VYR ++ G+IEEK+ RQ +K L++ ++ + R F +++ LF L++
Sbjct: 843 KDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARDMKDLFILKDDGDS 901
Query: 670 NTISDTHDKI-KCSRCVN--GIQVKPPPLESD 698
N ++T + + + +N G+Q P ESD
Sbjct: 902 NASTETSNIFSQLAEEINIVGVQSDKKP-ESD 932
Score = 248 (92.4 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 63/197 (31%), Positives = 96/197 (48%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
+L+ +YE R L E G + DEGHR++N S L+ R++++G PIQ
Sbjct: 519 LLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQ 578
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N L E +SL FV G LG F ++ PI G + AS + + A L ++
Sbjct: 579 NKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIM 638
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
L+RR A ++ +L KTE V+ +T Q+ Y + S V + G N+ G
Sbjct: 639 PYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYG--- 695
Query: 444 LSSITSLKKLCNHPDLV 460
I ++K+CNHPDL+
Sbjct: 696 ---IDVMRKICNHPDLL 709
Score = 111 (44.1 bits), Expect = 9.0e-56, Sum P(3) = 9.0e-56
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
+QR GV++++E + + A G I+ DEMGLGKT+Q ++ + +L + KP +I
Sbjct: 388 YQRVGVQWLWE----LHCQRAGG-IIGDEMGLGKTIQVLSFLGSL-HFSKMYKP----SI 437
Query: 210 IVAPSSLVKNWCNEITKW 227
I+ P +L++ W E KW
Sbjct: 438 IICPVTLLRQWRREAQKW 455
Score = 37 (18.1 bits), Expect = 4.8e-48, Sum P(3) = 4.8e-48
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 42 SVDNEDEPNSK 52
SVD++ EP SK
Sbjct: 490 SVDSDHEPKSK 500
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 288 (106.4 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 59/154 (38%), Positives = 97/154 (62%)
Query: 531 ERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSN--EFIFMLSSKAGGCGLNLIGANRL 588
E S L G Y+ +DGS+ KR V +FN N + ++S++AG G N++ ANR+
Sbjct: 1006 ETWSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRV 1065
Query: 589 VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDC 648
++FD WNP++D Q++ RV+R GQ KP ++YRF++ G++EE++ +RQ K++ S VVD
Sbjct: 1066 IIFDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTKESTSMRVVD- 1124
Query: 649 EEDVARHFSMSELRSLFQLEENTISDTHDKIKCS 682
E + RH+ ++L L+Q +T D +I C+
Sbjct: 1125 EAQIQRHYLGNDLTELYQFTPSTF-DPDVEISCA 1157
Score = 248 (92.4 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 56/158 (35%), Positives = 90/158 (56%)
Query: 270 ETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEY 329
E FR + L +V+CDE H+LKN +S + ++ + KRR+ L+GTP+QN+L+EY
Sbjct: 619 EDFRKY---LQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEY 675
Query: 330 FSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRR 389
+V+FV G+LGT EF ++ I RG+ AS E + R L + +C+ R+
Sbjct: 676 HCMVNFVKPGLLGTKTEFANRFVNIINRGRTKDASPLEVSFMKRRCHVLYDHLKKCVDRK 735
Query: 390 TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
+L++ +P K E V+ ++ T+ Q LY N +D V
Sbjct: 736 DYRVLTEAIPPKQEYVINVRQTERQCALY-NAFLNDIV 772
Score = 174 (66.3 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 48/157 (30%), Positives = 81/157 (51%)
Query: 124 DLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGV--RIE-DAYGCIMADEMG 180
D +D++ + V V L IL+PHQ G++FMY+C R++ + G I+A MG
Sbjct: 441 DSSTVDEES-KKPVEVHNSLVRILKPHQAHGIQFMYDCACESLDRLDTEGSGGILAHCMG 499
Query: 181 LGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALP-IDG 239
LGKTLQ IT + T+L + + + ++V P +++ NW E KWL L ID
Sbjct: 500 LGKTLQVITFLHTVLMHEKIGEKC-KRVLVVVPKNVIINWFKEFQKWLVDNDEELDTIDV 558
Query: 240 G---SKAEIDNKLNSFMQTYGRRPVNPILVISYETFR 273
S I+++ + + + + +++I Y+ FR
Sbjct: 559 NELDSYKTIEDRRRALKAWHSSKTPS-VMIIGYDLFR 594
Score = 51 (23.0 bits), Expect = 1.4e-55, Sum P(4) = 1.4e-55
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 8 QLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDE-PN--SKLPMTKEEMSEHE 64
Q S S E+S + K +++S R +EDE P+ SK + K+ SE E
Sbjct: 150 QTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESE 209
Query: 65 N 65
+
Sbjct: 210 S 210
Score = 44 (20.5 bits), Expect = 7.4e-55, Sum P(4) = 7.4e-55
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 24 PPPVKK--EKRSCTSRKPLGSVDNEDEPN-SKLPMTKEEMSEHEN 65
PPP K+ +KR +S + D E+ P S K SE E+
Sbjct: 49 PPPKKRPAKKRKASSSEE-DDDDEEESPRKSSKKSRKRAKSESES 92
Score = 44 (20.5 bits), Expect = 7.4e-55, Sum P(4) = 7.4e-55
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 1 RRSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKE 58
+ S S S++S E+ ++ P P K+K+ +K ++E+ LP K+
Sbjct: 252 KTSSEESSESEKSDEEEEEKESSPKP--KKKKPLAVKKLSSDEESEESDVEVLPQKKK 307
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 566 (204.3 bits), Expect = 6.2e-55, Sum P(2) = 6.2e-55
Identities = 158/563 (28%), Positives = 284/563 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAK 202
++ +L PHQREG+ +++ T G I+ D+MGLGKT+Q + + G
Sbjct: 373 IATMLYPHQREGLNWLWSLHT-----QGKGGILGDDMGLGKTMQICSFL-----AGLFHS 422
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV- 261
LI +A++VAP +L+ +W E+ +G G S + L+ +Q G
Sbjct: 423 KLIKRALVVAPKTLLPHWMKELAT-VGLSQMTREYYGTSTKAREYDLHHILQGKGILLTT 481
Query: 262 -----NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
N + + + N+ ++ DEGH +KN +Q ++L+ + + R++
Sbjct: 482 YDIVRNNTKALQGDDHYTDEDDEDGNKWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRII 541
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
+SGTPIQN+L E ++L +F G+LG F++ YE ILRG D A+D E+ + +
Sbjct: 542 ISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTVAK 601
Query: 377 QLIGIVNRCLIRRTSALL------SKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRT 430
L + +RR + + + L K E VV +++T Q++LY + S+ V
Sbjct: 602 NLREHIQPFFLRRLKSEVFGDDGATSKLSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSA 661
Query: 431 MKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGA-DGFENAMNILPTGYA---ASY 486
G + L+++T LKK+C+HP L+ + +G ++ + G A A +
Sbjct: 662 FDG--------SPLAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEAGVAERLAMH 713
Query: 487 KSGKLLIE--------LSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRG 538
+ + + +S KL + ++L + + ++++ S + L+L + G
Sbjct: 714 IADNVDTDDFQTKNDSISCKLSFIMSLLENL-IPEGHRVLIFSQTRKMLNLIQDSLTSNG 772
Query: 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
Y ++R+DG+ R K VE F + IF+L+S+ GG GL L A+R+++ DP WNP+
Sbjct: 773 YSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 832
Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
D+Q++ R +R GQ K VYR +++ ++EEK+ ++Q +K L + +E + R+FS
Sbjct: 833 TDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQI-RYFSQ 891
Query: 659 SELRSLFQLEEN--TISDTHDKI 679
+LR LF L + +S T ++
Sbjct: 892 QDLRELFSLPKGGFDVSPTQQQL 914
Score = 37 (18.1 bits), Expect = 6.2e-55, Sum P(2) = 6.2e-55
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 645 VVDCEEDVAR 654
V+D EED++R
Sbjct: 1073 VIDLEEDISR 1082
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 338 (124.0 bits), Expect = 6.4e-55, Sum P(2) = 6.4e-55
Identities = 98/314 (31%), Positives = 163/314 (51%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG--- 198
++ LR +QREG +F+Y G I GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 130 INRYLRDYQREGTRFLY----GHYIHGG-GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 184
Query: 199 ------P------LAK-PLIDKA----IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS 241
P + K PL A +IVAP S++ NW +E+ W RV L G
Sbjct: 185 DIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVL--HGNR 242
Query: 242 KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301
K DN+L Q R I + +YET R L+ E V+ DE HR+KN +++
Sbjct: 243 K---DNELIRVKQ----RKCE-IALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKAR 294
Query: 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDS 361
+ + LK R+ L+GT +QN++ E + ++ + G+LG+ F+KQ+ P+ GQ
Sbjct: 295 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRH 354
Query: 362 CASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL 421
A+ E + +++L ++ +RRT L+ LP K +++V +TD QK +Y +
Sbjct: 355 TATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 414
Query: 422 IKSDAVRRTMKGGE 435
++++ V ++ E
Sbjct: 415 LETEDVTLILQSSE 428
Score = 309 (113.8 bits), Expect = 6.4e-55, Sum P(2) = 6.4e-55
Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D K++L S T+ LD+ ++ G Y RLDGS ++R K
Sbjct: 518 SGKMKVLQQLLNHCRKNRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLK 576
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN T + I ++S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +
Sbjct: 577 IVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 636
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V R +S G++EE M RQ +K+ L CVV E+ R+F
Sbjct: 637 VKVLRLISLGTVEEIMYLRQIYKQQLH-CVVVGSENAKRYF 676
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 337 (123.7 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 106/347 (30%), Positives = 174/347 (50%)
Query: 101 KALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYE 160
K L P P+ + P L++ L D D I ++ LR +QREG +F+Y
Sbjct: 86 KDLEKPYFPDRKI----PSLASAFQLSEDGDSIPY------TINRYLRDYQREGAQFLYR 135
Query: 161 CVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG---------P--LAKPLIDKA 208
IE GCI+ D+MGLGKT+Q I+ + +L ++G P L K + K
Sbjct: 136 HY----IEGR-GCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSMKKKP 190
Query: 209 --------IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRP 260
+IVAP S++ NW +E+ W RV L GSK DN+L Q R
Sbjct: 191 PSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTVLH---GSKK--DNELLRLKQ----RK 241
Query: 261 VNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320
I + +YET R L+ E ++ DE HR+KN +++ + + +K K R+ L+GT
Sbjct: 242 CE-IALTTYETLRLCLEELNSLEWSAIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGT 300
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIG 380
+QN++ E + ++ + G+LG+ F+KQ+ P+ GQ A+ E + + +L
Sbjct: 301 VLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAK 360
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
++ +RRT L+ LP K +++V +TD QK +Y +++++ V
Sbjct: 361 KMSGWFLRRTKTLIKGQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 407
Score = 305 (112.4 bits), Expect = 2.0e-54, Sum P(2) = 2.0e-54
Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D K++L S T+ LD+ ++ G Y RLDGS ++R K
Sbjct: 505 SGKMKVLQQLLNHFRKQRD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLK 563
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN + + I ++S+ AGG GLN +GAN +++FDP WNPAND QA+ R +R GQ +
Sbjct: 564 IVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRD 623
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V R +S G++EE M RQ +K+ L CVV E+ R+F
Sbjct: 624 VKVLRLISLGTVEEIMYLRQVYKQQLH-CVVVGSENAKRYF 663
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 325 (119.5 bits), Expect = 5.5e-54, Sum P(2) = 5.5e-54
Identities = 94/314 (29%), Positives = 160/314 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG--- 198
++ LR +QREG +F+Y GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 57 INRYLRDYQREGAQFLY-----AHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTRE 111
Query: 199 ------P------LAK-PLIDKA----IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS 241
P + K P A +IVAP S++ NW +E+ W RV L G
Sbjct: 112 DIENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFRVTIL--HGNK 169
Query: 242 KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301
K DN+L Q R I + +YET R L+ E V+ DE H++KN +++
Sbjct: 170 K---DNELVRVKQ----RKCE-IALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKAR 221
Query: 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDS 361
+ + LK R+ L+GT +QN++ E + ++ + G+LG+ F+KQ+ P+ GQ
Sbjct: 222 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRH 281
Query: 362 CASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL 421
A+ E + +++L +++ +RRT L+ LP K +++V +TD QK +Y +
Sbjct: 282 TATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 341
Query: 422 IKSDAVRRTMKGGE 435
+++ V ++ E
Sbjct: 342 LETKDVTLILQSSE 355
Score = 319 (117.4 bits), Expect = 5.5e-54, Sum P(2) = 5.5e-54
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D KI+L S T+ LD+ ++ G+ Y RLDGS ++R K
Sbjct: 445 SGKMKVLQQLLNHCRKNKD-KILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIK 503
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN T + I ++S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +
Sbjct: 504 IVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 563
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V+R +S G++EE M RQ +K+ L CVV E+ R+F
Sbjct: 564 VKVFRLISLGTVEEIMYLRQVYKQQLH-CVVVGSENAKRYF 603
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 338 (124.0 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 101/343 (29%), Positives = 176/343 (51%)
Query: 125 LLKIDKDKIQVHVVVDPV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGK 183
LLK ++ + ++ P+ ++ ++P+Q EG+ ++Y+ +I I+ADEMGLGK
Sbjct: 299 LLKDANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYR-FKING----ILADEMGLGK 353
Query: 184 TLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKA 243
TLQ I+L+ LR K + K+II+ P S + NW EI KW + A G
Sbjct: 354 TLQTISLL-CYLR---FNKNIKKKSIIICPRSTLDNWYEEIKKWCTP-MKAFKYYGNKDQ 408
Query: 244 EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303
+ N + +L+ +YE S L+ + ++ DE HR+KN +S
Sbjct: 409 RKELNRNLLHSDFD------VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLS 462
Query: 304 QALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCA 363
++ L+++ R+L++GTP+ N+L E +SL++F+ I ++EF + + D+
Sbjct: 463 SSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDN-- 520
Query: 364 SDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI- 422
K +E + QL I+ ++RR + + LP K E + + M+ LQK+LY++++
Sbjct: 521 ------KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILS 574
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQ 465
K+ V M G +N L + + L+K CNHP L D I+
Sbjct: 575 KNIDVLNAMTGSKNQMLNI-----LMQLRKCCNHPYL-FDGIE 611
Score = 311 (114.5 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 70/196 (35%), Positives = 114/196 (58%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y G LIE S K+ +LD +L +K + +++L S T+ LD+ + + + Y Y+R+D
Sbjct: 615 YIEGNHLIETSGKMSLLDKLLPRLKKE-NSRVLLFSQMTRLLDIIDDYCRWKNYPYLRID 673
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS +R + FN+ +++ FIF+LS++AGG G+NL A+ +++FD D+NP D QAM
Sbjct: 674 GSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAM 733
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE---DVARHFSMSEL 661
R R GQKK VYRF++ S+EEK+++R A K L S ++ + + A+ + EL
Sbjct: 734 DRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQEL 793
Query: 662 RSLFQLEENTISDTHD 677
+ + T D
Sbjct: 794 HDILNFGAPEVYKTQD 809
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 338 (124.0 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 101/343 (29%), Positives = 176/343 (51%)
Query: 125 LLKIDKDKIQVHVVVDPV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGK 183
LLK ++ + ++ P+ ++ ++P+Q EG+ ++Y+ +I I+ADEMGLGK
Sbjct: 299 LLKDANEEDEAIILKQPMNINGTMKPYQLEGLNWLYQLYR-FKING----ILADEMGLGK 353
Query: 184 TLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKA 243
TLQ I+L+ LR K + K+II+ P S + NW EI KW + A G
Sbjct: 354 TLQTISLL-CYLR---FNKNIKKKSIIICPRSTLDNWYEEIKKWCTP-MKAFKYYGNKDQ 408
Query: 244 EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303
+ N + +L+ +YE S L+ + ++ DE HR+KN +S
Sbjct: 409 RKELNRNLLHSDFD------VLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLS 462
Query: 304 QALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCA 363
++ L+++ R+L++GTP+ N+L E +SL++F+ I ++EF + + D+
Sbjct: 463 SSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLFNISKISTNDN-- 520
Query: 364 SDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI- 422
K +E + QL I+ ++RR + + LP K E + + M+ LQK+LY++++
Sbjct: 521 ------KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILS 574
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQ 465
K+ V M G +N L + + L+K CNHP L D I+
Sbjct: 575 KNIDVLNAMTGSKNQMLNI-----LMQLRKCCNHPYL-FDGIE 611
Score = 311 (114.5 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 70/196 (35%), Positives = 114/196 (58%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y G LIE S K+ +LD +L +K + +++L S T+ LD+ + + + Y Y+R+D
Sbjct: 615 YIEGNHLIETSGKMSLLDKLLPRLKKE-NSRVLLFSQMTRLLDIIDDYCRWKNYPYLRID 673
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS +R + FN+ +++ FIF+LS++AGG G+NL A+ +++FD D+NP D QAM
Sbjct: 674 GSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAM 733
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE---DVARHFSMSEL 661
R R GQKK VYRF++ S+EEK+++R A K L S ++ + + A+ + EL
Sbjct: 734 DRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQEL 793
Query: 662 RSLFQLEENTISDTHD 677
+ + T D
Sbjct: 794 HDILNFGAPEVYKTQD 809
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 325 (119.5 bits), Expect = 7.1e-54, Sum P(2) = 7.1e-54
Identities = 94/314 (29%), Positives = 160/314 (50%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG--- 198
++ LR +QREG +F+Y GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 119 INRYLRDYQREGAQFLY-----AHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGTRE 173
Query: 199 ------P------LAK-PLIDKA----IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS 241
P + K P A +IVAP S++ NW +E+ W RV L G
Sbjct: 174 DIENNMPEFLLRSMKKEPPSSTAKKMFLIVAPLSVLYNWRDELDTWGYFRVTIL--HGNK 231
Query: 242 KAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ 301
K DN+L Q R I + +YET R L+ E V+ DE H++KN +++
Sbjct: 232 K---DNELVRVKQ----RKCE-IALTTYETLRLCLDELNSLEWSAVIVDEAHKIKNPKAR 283
Query: 302 TYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDS 361
+ + LK R+ L+GT +QN++ E + ++ + G+LG+ F+KQ+ P+ GQ
Sbjct: 284 VTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRH 343
Query: 362 CASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL 421
A+ E + +++L +++ +RRT L+ LP K +++V +TD QK +Y +
Sbjct: 344 TATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTV 403
Query: 422 IKSDAVRRTMKGGE 435
+++ V ++ E
Sbjct: 404 LETKDVTLILQSSE 417
Score = 319 (117.4 bits), Expect = 7.1e-54, Sum P(2) = 7.1e-54
Identities = 70/161 (43%), Positives = 101/161 (62%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D KI+L S T+ LD+ ++ G+ Y RLDGS ++R K
Sbjct: 507 SGKMKVLQQLLNHCRKNKD-KILLFSFSTKLLDVLQQYCMAAGFDYRRLDGSTKSEERIK 565
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN T + I ++S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +
Sbjct: 566 IVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 625
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V+R +S G++EE M RQ +K+ L CVV E+ R+F
Sbjct: 626 VKVFRLISLGTVEEIMYLRQVYKQQLH-CVVVGSENAKRYF 665
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 331 (121.6 bits), Expect = 2.4e-53, Sum P(2) = 2.4e-53
Identities = 102/335 (30%), Positives = 171/335 (51%)
Query: 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
V V ++ LR +QREG+KF+Y+ R GCI+ D+MGLGKT+Q I + +L+
Sbjct: 50 VKVPYTINRYLRDYQREGIKFIYQNYAKSR-----GCILGDDMGLGKTVQVIGFLAAVLQ 104
Query: 197 Q-G---------P---LA-KPL--IDKA-IIVAPSSLVKNWCNEITKWLGGRVAALPIDG 239
+ G P L+ KP + K +IVAP S++ NW +E+ W G + + G
Sbjct: 105 KTGTWKDVENNRPQFLLSQKPSERVQKVFVIVAPLSVLYNWKDELDTW--GHFRVVVVHG 162
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
K D +L + GR I + +YET R + V+ DE H++KN +
Sbjct: 163 VRK---DEELARVQR--GRCE---IALTTYETLRLCLDQFNSINWAAVIVDEAHKIKNHK 214
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
S+ QA+ ++ K R+ L+GT +QN+L E + ++++ LG+ F+ ++ PI +GQ
Sbjct: 215 SKITQAVKQMRCKVRIGLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSDPIEKGQ 274
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
+ + + +++L ++R +RRT +L+S LP K ++VV +TD Q+ +Y
Sbjct: 275 KHTVTKRALAEGRKAVQELAKKLSRWFLRRTKSLISDQLPKKDDRVVYCSLTDFQRTVYR 334
Query: 420 NLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC 454
++ SD V ++ G SS KK C
Sbjct: 335 AVLDSDDVTLMLQSS-----GKCPCSSGRPRKKCC 364
Score = 311 (114.5 bits), Expect = 2.4e-53, Sum P(2) = 2.4e-53
Identities = 67/161 (41%), Positives = 101/161 (62%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ V+ +L + DK++L S T+ LD+ E G +Y RLDG+ K R K
Sbjct: 441 SGKMKVMQKLLNHF-IAKKDKVLLFSLSTKLLDVLESYCMAEGLEYHRLDGNTKSKDRVK 499
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN + + + ++S+ AGG GLN IGAN +V+FDP WNPAND QA+ RV+R GQ +
Sbjct: 500 IVKEFNSSRDVNLCLVSTLAGGLGLNFIGANVVVLFDPTWNPANDLQAIDRVYRIGQCRD 559
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V+R +S G++EE + RQ +K+ L S V+ +E+ R+F
Sbjct: 560 VTVFRLISLGTVEEIIYLRQVYKQQLQSSVIG-QENARRYF 599
Score = 47 (21.6 bits), Expect = 7.0e-25, Sum P(3) = 7.0e-25
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 627 IEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCV 685
+ + +QR++HK + C + V +E RS ++E + SD +K RCV
Sbjct: 781 VSDGELQRRSHKDSTKDGKNHCRKRV----KFAE-RSEDEIEHFSWSDDEGFLKAVRCV 834
Score = 38 (18.4 bits), Expect = 7.0e-25, Sum P(3) = 7.0e-25
Identities = 21/113 (18%), Positives = 50/113 (44%)
Query: 426 AVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAAS 485
A+ R + G+ + + L S+ +++++ + ++Q+ G ENA
Sbjct: 547 AIDRVYRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQENARRYFEAVQGTD 606
Query: 486 YKSGKLL-IELSAKLMVLDTMLA--VIKMTTDDKIVLVSNYTQTLDLFERLSK 535
+G+L I +L T L +++ ++ +++ TQ +D ER+ +
Sbjct: 607 GYAGELFGIRNLFRLQTDGTCLTHRILEREGQLEVGIMTARTQAVD--ERMQE 657
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 322 (118.4 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 67/162 (41%), Positives = 104/162 (64%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + LI S K++VLD +LA ++ +++L S T+ LD+ E RGY+Y RLD
Sbjct: 399 YTTDTHLITNSGKMLVLDKLLAKLR-EQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLD 457
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++R + ++TFN S++FIFMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 458 GQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 517
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKKP V+R ++ ++EE++++R K L S V+
Sbjct: 518 DRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 559
Score = 316 (116.3 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 100/327 (30%), Positives = 156/327 (47%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
V LR +Q G+ +M E+ I+ADEMGLGKTLQ I L+ L +
Sbjct: 102 VKGGTLRDYQVRGLNWMISLY-----ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIP 156
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRP 260
P +++ P S + NW NE +W+ R L D ++A + M G
Sbjct: 157 GP----HMVLVPKSTLHNWMNEFKRWVPSLRAVCLIGDKDARAAF---IRDVMMP-GEWD 208
Query: 261 VNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320
V V SYE SV K ++ DE HR+KN +S+ + + K R+LL+GT
Sbjct: 209 V---CVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 265
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIG 380
P+QN+L E ++L++F+ + +A +F ++T +C D K ERL
Sbjct: 266 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTK------NCLGDQ---KLVERLH---A 313
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
++ L+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K
Sbjct: 314 VLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKD-IDILNSAGKMDK-- 370
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTG 467
M L+ + L+K CNHP L D + G
Sbjct: 371 MRLLNILMQLRKCCNHPYL-FDGAEPG 396
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 323 (118.8 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
Identities = 103/335 (30%), Positives = 163/335 (48%)
Query: 128 IDKDKIQVHVVVDP--VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTL 185
+D + + V P V S LR +Q +G+ ++ E+ I+ADEMGLGKTL
Sbjct: 163 VDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLH-----ENKLSGILADEMGLGKTL 217
Query: 186 QCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEI 245
Q I+ + L + P + I+ P S + NW E KW V L + G
Sbjct: 218 QTISFLGYLRYVKQIEGPFL----IIVPKSTLDNWRREFLKWTPN-VNVLVLHGDKDTRA 272
Query: 246 DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
D N ++ R V L+ SYE + L + ++ DE HR+KN +S Q
Sbjct: 273 DIVRNIILEA--RFDV---LITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQI 327
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
+ +K R+L++GTP+QN+L E ++L++F+ I G ++ F + +E Q++ D
Sbjct: 328 IRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE------QNNSEQD 381
Query: 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD 425
E ++QL ++N L+RR A + K L K E V + MTD+Q + Y +L++ D
Sbjct: 382 QEIV-----IQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKD 436
Query: 426 AVRRTMKGGENTKLGMTALSSIT-SLKKLCNHPDL 459
+ G + G T L +I L+K CNHP L
Sbjct: 437 I--DAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL 469
Score = 316 (116.3 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
Identities = 62/162 (38%), Positives = 106/162 (65%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + LI S K+++LD +L +K ++++ S ++ LD+ E R ++Y R+D
Sbjct: 479 YTTDEHLIFNSGKMIILDKLLKRLK-EKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRID 537
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS + ++R + ++ +NK ++E F+F+L+++AGG G+NL+ A+ +++FD DWNP D QAM
Sbjct: 538 GSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAM 597
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK VYRF++ +IEEK+++R A K L V+
Sbjct: 598 DRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVI 639
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 323 (118.8 bits), Expect = 7.5e-53, Sum P(2) = 7.5e-53
Identities = 95/313 (30%), Positives = 163/313 (52%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG--- 198
++ LR +QREG +F+Y G I+ GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 57 INRYLRDYQREGAQFLY----GHFIQGR-GCILGDDMGLGKTVQVISFLAAVLGKKGTRE 111
Query: 199 ------P------LAK--PLIDKA--IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
P + K P K +IVAP S++ NW +E+ W RV L G K
Sbjct: 112 DIENNMPEFLLRNMKKDPPSTAKKMFLIVAPLSVLYNWKDELDTWGYFRVTIL--HGNKK 169
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
D++L Q R I + +YET R L+ E V+ DE HR+KN +++
Sbjct: 170 ---DSELIRVKQ----RKCE-IALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARV 221
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
+ + L+ R+ L+GT +QN++ E + ++ + G+LG+ F+KQ+ P+ GQ
Sbjct: 222 TEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHT 281
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
A+ E + +++L ++ +RRT L+ LP K +++V +TD QK +Y ++
Sbjct: 282 ATKRELATGRKAMQRLARKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVL 341
Query: 423 KSDAVRRTMKGGE 435
+++ V ++ E
Sbjct: 342 ETEDVSLILQSSE 354
Score = 310 (114.2 bits), Expect = 7.5e-53, Sum P(2) = 7.5e-53
Identities = 69/161 (42%), Positives = 99/161 (61%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D K++L S T+ LD+ ++ G Y RLDGS ++R K
Sbjct: 444 SGKMKVLQQLLNHCRKNKD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIK 502
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN T + I ++S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +
Sbjct: 503 IVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 562
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHF 656
V R +S G++EE M RQ +K+ L CVV E+ R+F
Sbjct: 563 VKVLRLISLGTVEEIMYLRQVYKQQLH-CVVVGSENAKRYF 602
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 359 (131.4 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 101/318 (31%), Positives = 164/318 (51%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+L + LR +Q G+ ++ VT E I+ADEMGLGKT+ I L+ L +
Sbjct: 531 LLKHSLREYQHIGLDWL---VT--MYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIW 585
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P +IV P+S++ NW E KW L G +K + KL Q + +
Sbjct: 586 GP----HLIVVPTSVMLNWETEFLKWCPA-FKILTYFGSAK---ERKLKR--QGWMKLNS 635
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTP 321
+ + +Y + + + + ++ DE H +KN +SQ +Q L+ +KRR+LL+GTP
Sbjct: 636 FHVCITTYRLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTP 695
Query: 322 IQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
+QNDL+E +SL+HF+ + + QEF+ + PI G E+ E +++L +
Sbjct: 696 LQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPIA-GM---VEGQEKIN-KEVIDRLHNV 750
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ L+RR + K LP K E V+ +++ Q+ LY + I S + T+ G + GM
Sbjct: 751 LRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSG--SFFGM 808
Query: 442 TALSSITSLKKLCNHPDL 459
+S I L+K+CNHPDL
Sbjct: 809 --ISIIMQLRKVCNHPDL 824
Score = 286 (105.7 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 65/213 (30%), Positives = 110/213 (51%)
Query: 486 YKSGKLLIELSA-KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRL 544
Y + LI+ KL L +L +K + ++ + T+ LD+ E L GY Y+RL
Sbjct: 1063 YFPDRRLIQFDCGKLQELAMLLRKLKFG-GHRALIFTQMTKMLDVLEAFINLYGYTYMRL 1121
Query: 545 DGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
DGS ++R +++ FN F+F+LS+++GG G+NL+GA+ ++ +D DWNPA D QA
Sbjct: 1122 DGSTPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQ 1181
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
R R GQ + +YR +S +IEE ++++ K+ L + V+ E F + L
Sbjct: 1182 DRCHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMEL 1241
Query: 665 FQLEENTISDTHDKIKCSRCVNGIQVKPPPLES 697
F ++ +K C I + +E+
Sbjct: 1242 FS-GHKALTTKDEKETSKHCGADIPLSNADVEA 1273
Score = 44 (20.5 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 44 DNED--EPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRRE 97
D+ED E + K TK E E ++ + P + + YT G S + V+ E
Sbjct: 223 DDEDTIEEDEK-HFTKRERQEELEALQNEVDLPVEELLRRYTSGRVSRETSPVKDE 277
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 326 (119.8 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 94/310 (30%), Positives = 163/310 (52%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQGP-- 199
++ LR +QREG +F+Y G I+ GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 57 INRYLRDYQREGAQFLY----GHFIQGR-GCILGDDMGLGKTVQVISFLAAVLGKKGTRE 111
Query: 200 -----LAKPLI-------DKAI--IVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEI 245
+ + L+ +K + IVAP S++ NW +E+ W RV L G K
Sbjct: 112 DIENNMPEFLLRTKDGRREKKLFLIVAPLSVLYNWRDELDTWGYFRVTIL--HGNKK--- 166
Query: 246 DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
DN+L Q R I + +YET R L+ E V+ DE HR+KN +++ +
Sbjct: 167 DNELIRVKQ----RKCE-IALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITEV 221
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
+ LK R+ L+GT +QN++ E + ++ + G+LG+ F+K + P+ GQ A+
Sbjct: 222 MKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTATK 281
Query: 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD 425
E + +++L ++ +RRT L+ LP K +++V +TD QK +Y +++++
Sbjct: 282 RELATGRKAMQRLAIKMSGWFLRRTKILIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETE 341
Query: 426 AVRRTMKGGE 435
V ++ E
Sbjct: 342 DVSLILQSSE 351
Score = 303 (111.7 bits), Expect = 2.1e-52, Sum P(2) = 2.1e-52
Identities = 68/160 (42%), Positives = 98/160 (61%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K+ VL +L + D K++L S T+ LD+ ++ G Y RLDGS ++R K
Sbjct: 441 SGKMKVLQQLLNHCRKNKD-KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERIK 499
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ FN T + I ++S+ AGG GLN +GAN +V+FDP WNPAND QA+ R +R GQ +
Sbjct: 500 IVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRD 559
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH 655
V R +S G++EE M RQ +K+ L CVV E+ R+
Sbjct: 560 VKVLRLISLGTVEEIMYLRQLYKQQLH-CVVVGSENAKRY 598
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 321 (118.1 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 65/162 (40%), Positives = 103/162 (63%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + ++ S K++VLD +LA +K ++++ S T+ LD+ E RGY+Y RLD
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLK-EQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLD 536
Query: 546 GSMTIKKRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++R + +E FN S+ FIFMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 537 GQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 596
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKKP V+R ++ ++EE++++R K L S V+
Sbjct: 597 DRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 638
Score = 305 (112.4 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 97/322 (30%), Positives = 155/322 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I L+ L + P
Sbjct: 186 LRDYQIRGLNWLISLY-----ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP--- 237
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+++ P S + NW NE +W+ RV D ++A + M G V
Sbjct: 238 -HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAF---IRDEMMP-GEWDV---C 289
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
V SYE SV K ++ DE HR+KN +S+ + + K+ R+LL+GTP+QN+
Sbjct: 290 VTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN 349
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + +A +F ++T +C D K ERL ++
Sbjct: 350 LHELWALLNFLLPDVFNSADDFDSWFDTK------NCLGDQ---KLVERLH---AVLKPF 397
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
L+RR + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 398 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKD-IDVLNSAGKMDK--MRLLN 454
Query: 446 SITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 455 ILMQLRKCCNHPYL-FDGAEPG 475
Score = 60 (26.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 49/222 (22%), Positives = 87/222 (39%)
Query: 4 LAPSQLSKRSPEDSPGIKTFPPPVKKE-KRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSE 62
+ PS +++SP IK P +KK+ K+S S E E + +L E +
Sbjct: 112 IQPS--AQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEEL---LSESRK 166
Query: 63 HENLIRQILAKPFKV---PILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQ 119
N+ + P V P+ +Y G + + + G L D L T
Sbjct: 167 TSNVCVRFEVSPSYVKGGPLRDYQIRGLNW-LISLYENGVNGILADEMGLGK-TLQTIAL 224
Query: 120 LSAHDLLKIDKDKIQVHVVVDP--VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMAD 177
L LK ++ H+V+ P L N + +R C G + DA + D
Sbjct: 225 LG---YLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDK--DARAAFIRD 279
Query: 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219
EM G+ C+T ++++ + K + +++ + +KN
Sbjct: 280 EMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKN 321
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 338 (124.0 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 98/313 (31%), Positives = 166/313 (53%)
Query: 143 LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-RQG--- 198
++ LR +QREG +F+Y R GCI+ D+MGLGKT+Q I+ + +L ++G
Sbjct: 30 INRYLRGYQREGAQFLYWHYANKR-----GCILGDDMGLGKTVQVISFLAAVLHKKGTRE 84
Query: 199 ------P--LAKPLIDKA--------IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
P L + + ++ +IVAP S++ NW +E+ W +V+ L GSK
Sbjct: 85 DIENNMPEFLQRTMKKESKCNPKKTFLIVAPLSVLYNWKDELDTWGYFKVSVLH---GSK 141
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
E D LN Q G+ V + +YET R + L+ V+ DE HR+KN +SQ
Sbjct: 142 KEGD--LNRIKQ--GKCEV---ALTTYETLRLYLDELNNIGWSAVIVDEVHRIKNPKSQI 194
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
Q + LK R+ L+GT +QN++ E + ++ + G+LG+ F+K++ P+ RGQ
Sbjct: 195 TQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKKKFSDPLERGQRHT 254
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
A+ E + + +L ++ +RRT L+S LP K +++V +T+ QK +Y ++
Sbjct: 255 ATKRELATGRKAMVKLARKMSSWFLRRTKVLISDQLPKKEDRMVYCSLTEFQKAVYRAVL 314
Query: 423 KSDAVRRTMKGGE 435
K++ V ++ E
Sbjct: 315 KTEDVSLVLRARE 327
Score = 289 (106.8 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 81/252 (32%), Positives = 124/252 (49%)
Query: 400 VKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
+KTE V + + I+ + + GE K LS +T L+K+ NH L
Sbjct: 314 LKTEDVSLVLRAREPCSCNSGRIRKNCCYKINSHGETVK--SLQLSYLTILQKVANHVAL 371
Query: 460 VM-DKIQTGADGF-----ENAMNILPTGYAASYKSGKLLI---ELSAKLMVLDTMLAVIK 510
+ D + + P S + I + S K+ VL +L +
Sbjct: 372 LQTDNTSKQQETHIKRVCNEVFSSFPDFMQLSKDAAFETISDPKYSGKMRVLQQLLNHFR 431
Query: 511 MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570
D K++L S T+ LD+ E+ G + RLDGS + R ++V FN+ I +
Sbjct: 432 KNKD-KVLLFSFSTKLLDVLEQYCIASGLDFRRLDGSTKSEDRIRIVREFNRVPEINICL 490
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
+S+ AGG GLN +GAN +++FDP WNPAND QA+ R +R GQ K V+R +S G++EE
Sbjct: 491 VSTMAGGLGLNFVGANVVILFDPTWNPANDLQAIDRAYRIGQCKDVKVFRLISLGTVEEM 550
Query: 631 MMQRQAHKKALS 642
M RQ +K+ L+
Sbjct: 551 MYLRQVYKQLLA 562
Score = 45 (20.9 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 312 KRRVLLSGT-PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTK 370
+ +VL+S P + D + Y SL F Q + A + + + +LR ++ C+ ++ R +
Sbjct: 281 RTKVLISDQLPKKEDRMVYCSLTEF--QKAVYRAV-LKTEDVSLVLRAREPCSCNSGRIR 337
Query: 371 AN 372
N
Sbjct: 338 KN 339
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 366 (133.9 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 91/278 (32%), Positives = 154/278 (55%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + ++ I++ LQ+E+Y + D ++ + T+ + L+ + LKKLC+HP L+
Sbjct: 241 KNDLIIWIRLVPLQEEIYRKFVSLDHIKELLM---ETR---SPLAELGVLKKLCDHPRLL 294
Query: 461 MDK----IQTGA----DGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMT 512
+ + G DG E + P + L+E S K++ L +L ++
Sbjct: 295 SARACCLLNLGTFSAQDGNEGEDS--PDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDE 352
Query: 513 TDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFML 571
+V S Q L++ ERL K R +K +R+DG++T + +R K + F + + +F+L
Sbjct: 353 GHQTLVF-SQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLL 411
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKM 631
+++ GG GL L A R+V+FDP WNPA D QA+ RV+R GQK+ VYR ++ G++EEK+
Sbjct: 412 TTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI 471
Query: 632 MQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ K +L +++ R+FS ELR LF +E+
Sbjct: 472 YRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIED 509
Score = 261 (96.9 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 68/224 (30%), Positives = 110/224 (49%)
Query: 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
MGLGKT+Q I + G L++ +++ P++L+ W E KW G +
Sbjct: 1 MGLGKTVQIIAFL-----SGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFH 54
Query: 239 GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSH---ASVLHKNEV--GLVLCDEGH 293
G SK E LN Q G +++ +Y+ ++ S E V+ DE H
Sbjct: 55 GPSKDERTRNLNRIQQRNG------VIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAH 108
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQG-ILGTAQEFRKQYE 352
++K +++ + A R+LL+GTPIQN+L E +SL F QG +LGT + F+ +YE
Sbjct: 109 KIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYE 168
Query: 353 TPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSK 396
PI R ++ A+ E+ + E L+ I+ +RRT + K
Sbjct: 169 NPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQK 212
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 348 (127.6 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 108/331 (32%), Positives = 164/331 (49%)
Query: 133 IQVHVVVDPVL--SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITL 190
IQ V P L LR +Q EG+++M D Y I+ADEMGLGKT+Q I L
Sbjct: 370 IQEKVTKQPSLLQGGELRSYQLEGLQWMVSLYNN----D-YNGILADEMGLGKTIQTIAL 424
Query: 191 MWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250
+ LL L P +I+AP +++ NW NE W ++A DG + + +
Sbjct: 425 IAYLLESKDLHGP----HLILAPKAVLPNWENEFALWAPS-ISAFLYDGSKEKRTEIRA- 478
Query: 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGL 309
+ G + N +L+ Y+ + L K + ++ DEGHRLKN E + L G
Sbjct: 479 ---RIAGGK-FN-VLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGY 533
Query: 310 KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369
+ KRR+LL+GTPIQN L E +SL++F+ I + F + + TP + +D E
Sbjct: 534 RIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEEL 593
Query: 370 KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRR 429
RL ++ L+RR + + K+LP KT+ ++ M+ QK Y + +D R
Sbjct: 594 LIINRLHH---VIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQV--TDVGRV 648
Query: 430 TMKGGENTKLGMTALSSIT-SLKKLCNHPDL 459
+ G N K +L ++T L+K CNHP L
Sbjct: 649 GLHSG-NGK--SKSLQNLTMQLRKCCNHPYL 676
Score = 279 (103.3 bits), Expect = 4.0e-52, Sum P(2) = 4.0e-52
Identities = 61/156 (39%), Positives = 93/156 (59%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
++ S K +LD +L +K +I+L S T+ +DL E L Y Y+RLDGS
Sbjct: 690 IVRASGKFELLDRLLPKLKKA-GHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTD 748
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
+R +++ FN+ + F+F+LS++AGG GLNL A+ +++FD DWNP D QA R R
Sbjct: 749 QRGILLKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRI 808
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK V+ +S GSIEE +++R K + + V+
Sbjct: 809 GQKKEVRVFVLVSIGSIEEVILERAKQKMGIDAKVI 844
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 321 (118.1 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 65/162 (40%), Positives = 103/162 (63%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + ++ S K++VLD +LA +K ++++ S T+ LD+ E RGY+Y RLD
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLK-EQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLD 536
Query: 546 GSMTIKKRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++R + +E FN S+ FIFMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 537 GQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 596
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKKP V+R ++ ++EE++++R K L S V+
Sbjct: 597 DRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 638
Score = 305 (112.4 bits), Expect = 7.3e-52, Sum P(2) = 7.3e-52
Identities = 97/322 (30%), Positives = 155/322 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I L+ L + P
Sbjct: 186 LRDYQIRGLNWLISLY-----ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP--- 237
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+++ P S + NW NE +W+ RV D ++A + M G V
Sbjct: 238 -HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAF---IRDEMMP-GEWDV---C 289
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
V SYE SV K ++ DE HR+KN +S+ + + K+ R+LL+GTP+QN+
Sbjct: 290 VTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN 349
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + +A +F ++T +C D K ERL ++
Sbjct: 350 LHELWALLNFLLPDVFNSADDFDSWFDTK------NCLGDQ---KLVERLH---AVLKPF 397
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
L+RR + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 398 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKD-IDVLNSAGKMDK--MRLLN 454
Query: 446 SITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 455 ILMQLRKCCNHPYL-FDGAEPG 475
Score = 60 (26.2 bits), Expect = 3.8e-26, Sum P(2) = 3.8e-26
Identities = 49/222 (22%), Positives = 87/222 (39%)
Query: 4 LAPSQLSKRSPEDSPGIKTFPPPVKKE-KRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSE 62
+ PS +++SP IK P +KK+ K+S S E E + +L E +
Sbjct: 112 IQPS--AQKSPTSPLNIKLGRPRIKKDDKQSLISAGDYRHRRTEQEEDEEL---LSESRK 166
Query: 63 HENLIRQILAKPFKV---PILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQ 119
N+ + P V P+ +Y G + + + G L D L T
Sbjct: 167 TSNVCVRFEVSPSYVKGGPLRDYQIRGLNW-LISLYENGVNGILADEMGLGK-TLQTIAL 224
Query: 120 LSAHDLLKIDKDKIQVHVVVDP--VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMAD 177
L LK ++ H+V+ P L N + +R C G + DA + D
Sbjct: 225 LG---YLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDK--DARAAFIRD 279
Query: 178 EMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKN 219
EM G+ C+T ++++ + K + +++ + +KN
Sbjct: 280 EMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKN 321
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 327 (120.2 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 79/209 (37%), Positives = 120/209 (57%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
M L+ + L+K CNHP L DG E P Y + + ++ S K++
Sbjct: 460 MRLLNILMQLRKCCNHPYLF--------DGAE------P---GPPYTTDEHIVSNSGKMV 502
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK--VVE 558
VLD +LA +K ++++ S T+ LD+ E RGY+Y RLDG ++R K +E
Sbjct: 503 VLDKLLAKLK-EQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIE 561
Query: 559 TFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
FN S++FIFMLS++AGG G+NL A+ ++++D DWNP D QAM R R GQKKP
Sbjct: 562 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 621
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
V+R ++ ++EE++++R K L S V+
Sbjct: 622 VFRLITDNTVEERIVERAEIKLRLDSIVI 650
Score = 296 (109.3 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 98/323 (30%), Positives = 155/323 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I L+ L + P
Sbjct: 195 LRDYQIRGLNWLISLY-----ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP--- 246
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+++ P S + NW NE +W+ RV D ++A + M G V
Sbjct: 247 -HMVLVPKSTLYNWMNEFKRWVPSLRVICFVGDKDARAAF---IRDEMMP-GEWDV---C 298
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
V SYE SV K ++ DE HR+KN +S+ + + K+ R+LL+GTP+QN+
Sbjct: 299 VTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN 358
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + +A +F ++T +C D K ERL ++
Sbjct: 359 LHELWALLNFLLPDVFNSADDFDSWFDTK------NCLGDQ---KLVERLH---AVLKPF 406
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKEL-YTNLIKSDAVRRTMKGGENTKLGMTAL 444
L+RR + K LP K E V + ++ +Q+E YT ++ D + G+ K M L
Sbjct: 407 LLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKD-IDVLNSAGKMDK--MRLL 463
Query: 445 SSITSLKKLCNHPDLVMDKIQTG 467
+ + L+K CNHP L D + G
Sbjct: 464 NILMQLRKCCNHPYL-FDGAEPG 485
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 321 (118.1 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 100/323 (30%), Positives = 155/323 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q +G+ ++ E+ I+ADEMGLGKTLQ I+ + LR K +
Sbjct: 139 LREYQIQGLNWLISLY-----ENRLSGILADEMGLGKTLQTISFLG-YLRY---IKHIDG 189
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
I++ P S + NW E KW V L D +A I Q Y + +L
Sbjct: 190 PFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKD-----QLYTAK--FDVL 242
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+ S+E S L K ++ DE HR+KN +S + + ++ R+L++GTP+QN+
Sbjct: 243 ITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNN 302
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + G + +F + ++ D + KA L QL+ +
Sbjct: 303 LHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL---SPF 359
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
L+RR A + K L K E V I MTD+Q E Y L++ D + G + G T L
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDI--DAVNGVVGKREGKTRLL 417
Query: 446 SIT-SLKKLCNHPDLVMDKIQTG 467
+I L+K CNHP L D + G
Sbjct: 418 NIVMQLRKCCNHPYL-FDGAEPG 439
Score = 302 (111.4 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 61/162 (37%), Positives = 101/162 (62%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + L+ S K+++LD ML K ++++ S ++ LD+ E R Y+Y R+D
Sbjct: 442 YTTDEHLVYNSGKMIILDKMLKKFK-AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRID 500
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS + + R + ++ +N +E FIF+L+++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 501 GSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAM 560
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+RF++ +IEEK+++R A K L V+
Sbjct: 561 DRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 321 (118.1 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 100/323 (30%), Positives = 155/323 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q +G+ ++ E+ I+ADEMGLGKTLQ I+ + LR K +
Sbjct: 139 LREYQIQGLNWLISLY-----ENRLSGILADEMGLGKTLQTISFLG-YLRY---IKHIDG 189
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
I++ P S + NW E KW V L D +A I Q Y + +L
Sbjct: 190 PFIVIVPKSTLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKD-----QLYTAK--FDVL 242
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+ S+E S L K ++ DE HR+KN +S + + ++ R+L++GTP+QN+
Sbjct: 243 ITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNN 302
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + G + +F + ++ D + KA L QL+ +
Sbjct: 303 LHELWALLNFLLPDVFGDSDQFDEAFDNQNSEELDEEEKQRRQDKAVSELHQLL---SPF 359
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
L+RR A + K L K E V I MTD+Q E Y L++ D + G + G T L
Sbjct: 360 LLRRVKADVEKSLLPKIETNVYIGMTDMQVEWYKRLLEKDI--DAVNGVVGKREGKTRLL 417
Query: 446 SIT-SLKKLCNHPDLVMDKIQTG 467
+I L+K CNHP L D + G
Sbjct: 418 NIVMQLRKCCNHPYL-FDGAEPG 439
Score = 302 (111.4 bits), Expect = 1.5e-51, Sum P(2) = 1.5e-51
Identities = 61/162 (37%), Positives = 101/162 (62%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + L+ S K+++LD ML K ++++ S ++ LD+ E R Y+Y R+D
Sbjct: 442 YTTDEHLVYNSGKMIILDKMLKKFK-AEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRID 500
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS + + R + ++ +N +E FIF+L+++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 501 GSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAM 560
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+RF++ +IEEK+++R A K L V+
Sbjct: 561 DRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVI 602
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 314 (115.6 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 121/465 (26%), Positives = 212/465 (45%)
Query: 7 SQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENL 66
S L KR D + PP + R ++K V + D + M KE++++ +
Sbjct: 307 SNLRKRKVSDKTRVVNKHPPSLRRSRRFFAKKSYNHVSDLD--GEVIVMKKEDITDGVST 364
Query: 67 IRQIL-AKPFKVPILNYTGGGYSTKAL---GVRREGARKALHDPTAPNALVLYTPPQLSA 122
+ + +VP L+ TG S L V + R+ D A + Q
Sbjct: 365 KKDLNDGDQNEVP-LHDTGSSSSLSLLYNEDVASKKKRRVNDDGLARKKSIAGISEQRKF 423
Query: 123 HDLLKIDKDKIQVHVVVDPVL-SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGL 181
+ + + + P L LR +Q+ G++++ T + + G I+ADEMGL
Sbjct: 424 DE--PNGSPVLHANKIQVPFLFRGTLREYQQYGLEWL----TALHDSNTNG-ILADEMGL 476
Query: 182 GKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS 241
GKT+Q I L+ L + P +I+ P+S++ NW E K+L G L G
Sbjct: 477 GKTIQTIALLAHLACEKENWGP----HLIIVPTSVMLNWEMEFKKFLPG-FKILTYYGNP 531
Query: 242 KAEIDNKLNSFMQTYGRRPVN-PILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
+ E K + + Y +P + + SY+ + H K ++L DE H +KN
Sbjct: 532 Q-ERKEKRSGW---Y--KPDTWHVCITSYQLVLQDHQPFRRKKWQYMIL-DEAHNIKNFR 584
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQ-GILGTAQEFR--KQYETPIL 356
SQ +Q+L+ A+ R+LL+GTP+QN+L+E +SL++F+ G+ F K ++
Sbjct: 585 SQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFS 644
Query: 357 RGQDSCASDAE--RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQ 414
+ D + + +A + +L ++ L+RR + K +P K E VV +++ Q
Sbjct: 645 KPMDRLIEEGQDMNPEAMNTVAKLHRVLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQ 704
Query: 415 KELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
+ LY + I R + G M+ ++ + L+K+CNHP+L
Sbjct: 705 RFLYDDFINRARTREILASGNF----MSIINCLMQLRKVCNHPNL 745
Score = 306 (112.8 bits), Expect = 6.3e-51, Sum P(2) = 6.3e-51
Identities = 62/200 (31%), Positives = 113/200 (56%)
Query: 473 NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER 532
N ++ T A ++ +LL KL VLD +L + ++ ++++ + T+ LD+ E+
Sbjct: 967 NPLHQASTRLAIAFPDKRLLQYDCGKLQVLDRLLKDL-VSNGHRVLIFTQMTKVLDILEQ 1025
Query: 533 LSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFD 592
+ G++Y+RLDG+ I++R + E FN +F+LS+++GG G+NL GA+ ++ +D
Sbjct: 1026 FLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYD 1085
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
DWNP D QA R R GQ + +YR +S ++E M++R K+ L V+ E
Sbjct: 1086 SDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFT 1145
Query: 653 ARHFSMSELRSLFQLEENTI 672
F +++ LF L++ ++
Sbjct: 1146 TEWFRKADVLDLFDLDDESL 1165
Score = 45 (20.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 343 TAQEFRKQY---ETPILRGQDSCASDAERTKANERLEQLI 379
TA E RK++ E + R + A++A+R E+L ++
Sbjct: 179 TAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQLANIL 218
Score = 40 (19.1 bits), Expect = 5.0e-23, Sum P(2) = 5.0e-23
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 639 KALSSCVVDCEEDVARHFSMSELRSLF 665
KAL SC++ EE R +M E+ F
Sbjct: 911 KALRSCILSTEE---RASNMKEIIQRF 934
Score = 39 (18.8 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 28 KKEKRSCTSRKPLGSVD--NEDEP-NSKLPMTKEEMSEHENLIRQ 69
++E + +PL S D NEDE + + K ++S+ ++ +
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNK 323
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 331 (121.6 bits), Expect = 7.1e-51, Sum P(2) = 7.1e-51
Identities = 88/286 (30%), Positives = 145/286 (50%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+ I+L+ L Q + P +IV PSS++ NW E +W G +
Sbjct: 803 ILADEMGLGKTIMTISLIAYLAVQKGVWGP----HLIVVPSSVLFNWEMEFKRWCPG-LK 857
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
G S+ D K N + + + + + SY S + + + ++ DE H
Sbjct: 858 IFTYHGTSR---DRKANR--KGWSKSNAFHVCITSYSMVMSDHLIFRRKKWVYMILDEAH 912
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
+KN ++Q +Q ++ +RR+LL+GTP+QN+L+E +SL+HF+ I + +EF+ +
Sbjct: 913 VIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHREFQDWFSN 972
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
P+ G D N RL ++ L+RR + K +P K +V M+
Sbjct: 973 PVT-GMIEGGDDVNEDIIN-RLH---AVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRR 1027
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
QK LY I S + + T+ G + ++ + L+K+CNHPDL
Sbjct: 1028 QKFLYEEFINSSSTQSTLSSGSFFSI----INILMQLRKVCNHPDL 1069
Score = 297 (109.6 bits), Expect = 7.1e-51, Sum P(2) = 7.1e-51
Identities = 66/189 (34%), Positives = 106/189 (56%)
Query: 486 YKSGKLLIELSA-KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRL 544
Y K LI+ KL L +L +K + ++ + T+ LD+FE L Y Y+RL
Sbjct: 1367 YFPDKRLIQYDCGKLQQLAILLRRLKQQ-GHRALIFTQMTKMLDIFETFLNLHAYTYLRL 1425
Query: 545 DGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
DGS I KR + E FN F+F+LS+++GG GLNL GA+ ++ +D DWNP+ D QA
Sbjct: 1426 DGSTKIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQ 1485
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE---DVARHFSMSEL 661
R R GQ + +YRF++ +IEE ++++ K+ L V+ E D ++ ++S
Sbjct: 1486 DRCHRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNLNLSTK 1545
Query: 662 RSLFQLEEN 670
S+ +++N
Sbjct: 1546 SSIDTIKDN 1554
Score = 37 (18.1 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 263 PILVISYETFRSHASVLHKNEVGLV 287
PI ++ Y S H+NEV L+
Sbjct: 1322 PITLLQYGASPSKLLEEHRNEVLLI 1346
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 319 (117.4 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 102/331 (30%), Positives = 157/331 (47%)
Query: 131 DKIQVHVVVDP--VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCI 188
D + V P + + LR +Q G+ +M E+ I+ADEMGLGKTLQ I
Sbjct: 125 DNVLVRFEESPSYIKNGTLRDYQIRGLNWMISLY-----ENGINGILADEMGLGKTLQTI 179
Query: 189 TLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK 248
L+ L + P +++ P S + NW NE +W+ A I G+K E
Sbjct: 180 ALLGYLKHYRNIPGP----HMVLVPKSTLHNWMNEFKRWVPTLKAVCLI--GNKDERAAF 233
Query: 249 LNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMG 308
+ M G V V SYE SV K ++ DE HR+KN +S+ +
Sbjct: 234 IRDVMMP-GEWDV---CVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIARE 289
Query: 309 LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAER 368
K R+LL+GTP+QN+L E +SL++F+ + +A +F ++T +C D
Sbjct: 290 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDT-------NCLGDQ-- 340
Query: 369 TKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVR 428
K ERL ++ L+RR A + K LP K E + + ++ +Q+E YT ++ D +
Sbjct: 341 -KLVERLH---AVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKD-ID 395
Query: 429 RTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
G+ K M L+ + L+K CNHP L
Sbjct: 396 ILNSAGKMDK--MRLLNILMQLRKCCNHPYL 424
Score = 296 (109.3 bits), Expect = 1.0e-50, Sum P(2) = 1.0e-50
Identities = 60/162 (37%), Positives = 101/162 (62%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++ LD +L ++ ++++ S T+ LD+ E RG++Y RLD
Sbjct: 434 YTTDTHLVINSGKMVALDKLLPKVQ-EQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLD 492
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G+ + R + ++ FN S++FIFMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 493 GNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 552
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ+KP V+R ++ ++EE++++R K L S V+
Sbjct: 553 DRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVI 594
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 313 (115.2 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 64/162 (39%), Positives = 103/162 (63%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + ++ S K++ LD +LA IK ++++ S T+ LD+ E RGY+Y RLD
Sbjct: 479 YTTDEHIVGNSGKMVALDKLLARIK-EQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLD 537
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++R + ++ FN S++FIFMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 538 GQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 597
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKKP V+R ++ ++EE++++R K L S V+
Sbjct: 598 DRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 639
Score = 302 (111.4 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 97/322 (30%), Positives = 154/322 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I L+ L + P
Sbjct: 187 LRDYQIRGLNWLISLY-----ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGP--- 238
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+++ P S + NW NE +W+ RV D +A + M G V
Sbjct: 239 -HMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAF---IRDEMMP-GEWDV---C 290
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
V SYE SV K ++ DE HR+KN +S+ + + K+ R+LL+GTP+QN+
Sbjct: 291 VTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNN 350
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + +A +F ++T +C D K ERL ++
Sbjct: 351 LHELWALLNFLLPDVFNSADDFDSWFDTK------NCLGDQ---KLVERLH---AVLKPF 398
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
L+RR + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 399 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKD-IDVLNSSGKMDK--MRLLN 455
Query: 446 SITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 456 ILMQLRKCCNHPYL-FDGAEPG 476
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 321 (118.1 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 85/253 (33%), Positives = 133/253 (52%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
HQREGV F+Y + E G I+AD+MGLGKT+Q I + G LI +
Sbjct: 83 HQREGVAFLYR----LHREGRPGGILADDMGLGKTIQIIAFL-----SGMFDSELIRHVL 133
Query: 210 IVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISY 269
++ P++LV +W E +W G + G SK E L + G I++ SY
Sbjct: 134 LIMPTTLVSSWLAEFARWTPG-LRVKEFHGTSKTERTRNLEKIQRKNG------IVITSY 186
Query: 270 E----TFRSHASVLHKNEV-GLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
+ ++ AS ++ V ++ DE H++K ++T + + + AK R+LL+GTP+QN
Sbjct: 187 QMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAKHRLLLTGTPLQN 246
Query: 325 DLLEYFSLVHFVNQG-ILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
+L E +SL F QG +LGTA+ FR +YE PI R ++ A+ E+ + E L+ I+
Sbjct: 247 NLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDATVGEKALGLKISENLMTIIK 306
Query: 384 RCLIRRTSALLSK 396
+RRT + K
Sbjct: 307 PYFLRRTKDDIKK 319
Score = 280 (103.6 bits), Expect = 1.3e-50, Sum P(2) = 1.3e-50
Identities = 72/234 (30%), Positives = 125/234 (53%)
Query: 388 RRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSI 447
R SA + L K + VV + + +Q+++Y N + D V+ + T+ + L+ +
Sbjct: 334 REPSAPVMPSLTRKNDFVVWVYLAPVQEKIYRNFLCLDHVKEVLT---TTR---SPLAEL 387
Query: 448 TSLKKLCNHPDLVMDKI--QTGADG-------FENAMNILPTGYAASYKSGKLLIELSAK 498
T LKKLC+HP L+ + Q DG E+ +L + S + LI+ S K
Sbjct: 388 TVLKKLCDHPRLLSARACTQLDLDGQEYLEQDHESEAAVLSGANKIDHLSDETLIQESGK 447
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVV 557
++ L +L ++ + ++ S + LD+ ER+ R +K +R+DG++T + +R K +
Sbjct: 448 MLFLVGLLGRLR-EEGHRTLVFSQSRKMLDIIERVLSSRQFKIMRIDGTVTHLTEREKRI 506
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
F + +F+L+++ GG G+ L ANR+V+FDP WNPA D QA+ R +R G
Sbjct: 507 NAFQSNKDYSVFLLTTQVGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIG 560
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 318 (117.0 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 104/348 (29%), Positives = 179/348 (51%)
Query: 122 AHDLLKIDKDKIQVHVVVDPVLSN--ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEM 179
AH + K D ++ + P+L L +Q GVK++ +D I+ DEM
Sbjct: 368 AHTVTK-DFERCTEGPLQLPLLKEGCTLHDYQLIGVKWLIMMYN----KDL-NAILGDEM 421
Query: 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG 239
GLGKT+Q + + + L+Q P +IV PSS ++NW E KW + L G
Sbjct: 422 GLGKTIQIVAFL-SYLKQIGKTGP----HLIVVPSSTIENWIGEFHKWCPS-IQLLTYYG 475
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYE--TFRSHASVLHKN-EVGLVLCDEGHRLK 296
D + + + ++ +++ +Y T +S KN + V+ DEGH LK
Sbjct: 476 SQ----DERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLK 531
Query: 297 NCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE--TP 354
NC+S+ Y+ LM +K K+++LL+GTP+QN+L+E SL++FV ++ F K E T
Sbjct: 532 NCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFV------LSKVFNKYCEDITH 585
Query: 355 ILRG--QDSCASDAERTKA---NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIK 409
+L+ Q A D + KA +R+E+ I+ ++RR + LP K+EQ++ ++
Sbjct: 586 LLQHFKQLGPALDT-KNKALYQQDRIEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVE 644
Query: 410 MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457
M QK+LY N++ +A++++ + G++ S+ L++ NHP
Sbjct: 645 MKKPQKQLYDNIV--EALQQSEESGDS-------YGSLMRLRQAANHP 683
Score = 294 (108.6 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
Identities = 75/216 (34%), Positives = 110/216 (50%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S K LD ML I+ DK+++ S +T LD+ E +RGY Y RLDG + R +
Sbjct: 752 SGKCEQLDVMLPEIQKK-GDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDRQE 810
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
++ FN + + F+F+LS++AGG G+NL AN +++ D D+NP ND QA R R GQ+KP
Sbjct: 811 MINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMGQEKP 870
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD-----CEEDVARHFSMSEL------RSL 664
V R +S G++E M+ K L V D +ED R E R L
Sbjct: 871 VHVTRLVSKGTVEVGMLALAKKKLQLEKQVTDGVKGQLDEDALRELKEEEGGEQCGGRDL 930
Query: 665 FQLEENTISDTHDKIK--CSRCVNGIQVKPPPLESD 698
+L + IS +D ++ NGI + + D
Sbjct: 931 SKLLSSAISGRYDDVEDDSGDSKNGIDAEEAAKKED 966
Score = 38 (18.4 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 40 LGSVDNEDEPNSKLPMTKEEMSEHENLIRQI 70
LGS+ ++ E ++ M K + ++N++ +
Sbjct: 630 LGSLPSKSEQIIEVEMKKPQKQLYDNIVEAL 660
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 338 (124.0 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 101/335 (30%), Positives = 170/335 (50%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+L+ L+ +Q +G+ ++ E I+ADEMGLGKT+Q I++M L +
Sbjct: 793 MLTAKLKEYQLKGLNWLVNLY-----EQGINGILADEMGLGKTIQSISVMAYLAEVHNIW 847
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK-LNSFMQ----TY 256
P + ++AP+S + NW EITK++ + LP G +K D K L F TY
Sbjct: 848 GPFL----VIAPASTLHNWQQEITKFVPN-IKVLPYWGNAK---DRKILRKFWDRKHITY 899
Query: 257 GRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
+ +LV SY+ A K + ++ DE +K+ +S +++L+G + R+L
Sbjct: 900 TKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLL 959
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE-RL 375
L+GTPIQN++ E ++L+HF+ + + EF + + I +S A TK NE +L
Sbjct: 960 LTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKDI----ESHAQS--NTKLNEDQL 1013
Query: 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS----DAVRRTM 431
+L I+ ++RR + + L K E+ V +T Q+ LYTNL D + +
Sbjct: 1014 RRLHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNLRNRVSIMDLIEKAA 1073
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQT 466
G E T ++ + +K+CNHPDL ++ +T
Sbjct: 1074 VGDETDST--TLMNLVMQFRKVCNHPDL-FERAET 1105
Score = 278 (102.9 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 57/151 (37%), Positives = 87/151 (57%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S KL LD +L +K +++L T+ +DL E R YKY RLDGS ++ R
Sbjct: 1320 SGKLAKLDELLRELK-AGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRD 1378
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
V F + + F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R GQ +
Sbjct: 1379 TVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQ 1438
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
VYR ++ +IEE++ +R K+ + V+
Sbjct: 1439 VTVYRLITRSTIEERIRKRALQKEEVQRVVI 1469
Score = 49 (22.3 bits), Expect = 2.3e-50, Sum P(3) = 2.3e-50
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 19 GIKTFPPPVKKEKRS--CTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFK 76
G T P K++K++ + +++N DEP LP+ E E+L + K
Sbjct: 493 GPVTRPKKSKEQKQAEKDAAEAAYAAMEN-DEP---LPLAPREDPRKESLKKDAKGGRSK 548
Query: 77 ----VPILNYTGGGYSTKALGVRREGARK 101
VP+ Y GY+ + R+ ARK
Sbjct: 549 EATPVPVSTYESKGYNQIYEQIWRDIARK 577
Score = 39 (18.8 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 16 DSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEH 63
+ P I P + EK + K + +DN ++ + + P ++E +
Sbjct: 277 EPPKILRPPRRIMSEKETEMVNKYMVEIDNAEKSDVEAPGFEQERERY 324
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 329 (120.9 bits), Expect = 5.4e-50, Sum P(3) = 5.4e-50
Identities = 79/210 (37%), Positives = 119/210 (56%)
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T L+ +T LKK CNHP L ++NA + G S +I S KL++
Sbjct: 1024 TLLNIMTELKKTCNHPYL-----------YQNARDECELGAKDLLDS---MIRASGKLVL 1069
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L +K T ++++ S + LD+ K R +++ RLDGSM+ +KR++ ++ FN
Sbjct: 1070 LDKLLIRLK-ETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFN 1128
Query: 562 KT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
S +F F+LS+KAGG G+NL A+ +++FD DWNP ND QA AR R GQK +YR
Sbjct: 1129 AVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYR 1188
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEE 650
+S S+EE +++R K L V+ E
Sbjct: 1189 LVSKSSVEEDILERAKQKMVLDHLVIQTME 1218
Score = 290 (107.1 bits), Expect = 5.4e-50, Sum P(3) = 5.4e-50
Identities = 85/303 (28%), Positives = 152/303 (50%)
Query: 142 VLSNILRPHQREGVKFM-YECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200
+ + LR +Q EG+ ++ + + + I+ADEMGLGKT+Q I+ + L + +
Sbjct: 750 ISAGTLRDYQMEGLNWLVHSWMNNTNV------ILADEMGLGKTIQTISFLSYLFNEQDI 803
Query: 201 AKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQT--YGR 258
P + +V P S ++NW E KW + G +I +L F T G+
Sbjct: 804 KGPFL----VVVPLSTIENWQREFAKWAPAMNVIVYTGTGQSRDII-RLYEFYTTNRLGK 858
Query: 259 RPVN-PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
+ +N +L+ +Y+ + L + + DE HRLKN ES ++ L R+L+
Sbjct: 859 KKLNFNVLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLV 918
Query: 318 SGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377
+GTP+QN L E ++L++F+ + ++F+ QY SD K N+++ Q
Sbjct: 919 TGTPLQNSLKELWNLLNFLMPNKFTSLKDFQDQY------------SDL---KENDQIAQ 963
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG-GEN 436
L ++ L+RR + K LP KTE+++ + ++++QK+ Y ++ + + KG GE
Sbjct: 964 LHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKN-FQELNKGKGEK 1022
Query: 437 TKL 439
T L
Sbjct: 1023 TTL 1025
Score = 46 (21.3 bits), Expect = 5.4e-50, Sum P(3) = 5.4e-50
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 10 SKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTK 57
S+ E+S + P KK+K+ RK G+ N + N +P T+
Sbjct: 358 SESDSEESESDSDYEPN-KKKKKQTNGRKRKGN--NFQKENWTIPATR 402
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 312 (114.9 bits), Expect = 6.6e-50, Sum P(2) = 6.6e-50
Identities = 90/302 (29%), Positives = 154/302 (50%)
Query: 168 EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKW 227
E I+ADEMGLGKT+Q I++M L + P + ++AP+S + NW EIT++
Sbjct: 858 EQGINGILADEMGLGKTVQSISVMAYLAETHNIWGPFL----VIAPASTLHNWQQEITRF 913
Query: 228 LGGRVAALPIDGGSKAEIDNK-LNSFM----QTYGRRPVNPILVISYETFRSHASVLHKN 282
+ ++ +P G +K D K L F TY ++V SY+ A
Sbjct: 914 VP-KLKCIPYWGSTK---DRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQYFQSV 969
Query: 283 EVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILG 342
+ ++ DE +K+ S +++L+ K + R+LL+GTPIQN + E ++L+HF+ +
Sbjct: 970 KWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFD 1029
Query: 343 TAQEFRKQYETPILRGQDSCASDAERTKANER-LEQLIGIVNRCLIRRTSALLSKYLPVK 401
+ EF + + I +S A T+ NE+ L++L I+ ++RR + L K
Sbjct: 1030 SHNEFSEWFSKDI----ESHAQS--NTQLNEQQLKRLHMILKPFMLRRVKKNVQSELGEK 1083
Query: 402 TEQVVCIKMTDLQKELYTNLIK----SDAVRRTMKGGENTKLGMTALSSITSLKKLCNHP 457
E+ V +T QK LY L + ++ + + + GG++T + L + +K+CNHP
Sbjct: 1084 IEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTVASIMNL--VMQFRKVCNHP 1141
Query: 458 DL 459
DL
Sbjct: 1142 DL 1143
Score = 301 (111.0 bits), Expect = 6.6e-50, Sum P(2) = 6.6e-50
Identities = 60/151 (39%), Positives = 92/151 (60%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S KL LD +L +K D ++++ T+ +DL E R YKY+RLDGS I +R
Sbjct: 1428 SGKLSKLDKLLVELK-ANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRD 1486
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V + F+F+LS++AGG G+NL A+ ++ +D DWNP+ D QAM R R GQ+K
Sbjct: 1487 MVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQ 1546
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
VYRF++ G+IEE+++ R K+ + V+
Sbjct: 1547 VTVYRFITRGTIEERIVIRAKEKEEVQKVVI 1577
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 335 (123.0 bits), Expect = 7.3e-50, Sum P(3) = 7.3e-50
Identities = 100/326 (30%), Positives = 165/326 (50%)
Query: 138 VVDPV---LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTL 194
VV PV L + LR +Q G+ ++ VT E I+ADEMGLGKT+Q I L+ L
Sbjct: 902 VVTPVPFLLKHSLREYQHIGLDWL---VT--MNERKLNGILADEMGLGKTIQTIALLAHL 956
Query: 195 LRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQ 254
AK +IV PSS++ NW E KW G L G K + KL
Sbjct: 957 A----CAKGNWGPHLIVVPSSVMLNWEMEFKKWCPG-FKILTYYGSQK---ERKLKRVGW 1008
Query: 255 TYGRRP-VNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKR 313
T +P + + SY+ + + ++ DE +KN +SQ +Q L+ +R
Sbjct: 1009 T---KPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTER 1065
Query: 314 RVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373
R+LL+GTP+QNDL+E +SL+HF+ + + +EF++ + P + G + T
Sbjct: 1066 RLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNP-MTGMIEGNMEYNETLIT- 1123
Query: 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
RL + ++ L+RR + K +P K E V+ ++++ Q+ LY + + R T++
Sbjct: 1124 RLHK---VIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQT 1180
Query: 434 GENTKLGMTALSSITSLKKLCNHPDL 459
G N ++ ++ + L+K+CNHP++
Sbjct: 1181 G-NL---LSVINVLMQLRKVCNHPNM 1202
Score = 290 (107.1 bits), Expect = 7.3e-50, Sum P(3) = 7.3e-50
Identities = 56/173 (32%), Positives = 100/173 (57%)
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
KL +D +L +K+ ++++ + T+ LD+ E G+ Y+RLDGS +++R ++
Sbjct: 1659 KLQTMDRLLRQLKVN-GHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILM 1717
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
E FN F F+LS+++GG G+NL GA+ ++ +D DWNP D QA R R GQ +
Sbjct: 1718 ERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1777
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEEN 670
+YR +S +IE ++++ K+ LS ++ +F S ++ LF +E++
Sbjct: 1778 IYRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQS 1830
Score = 47 (21.6 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 24/108 (22%), Positives = 44/108 (40%)
Query: 476 NILPTGYAASYKSGKLL-IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLS 534
N+LP+G S + + ++ K +V+++++ TT S+ T L + S
Sbjct: 1329 NLLPSGRVLKRVSASINPVNMALKPVVINSVV-----TTTSSSTTASSPTGALSVLSN-S 1382
Query: 535 KLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNL 582
KL G + + AKV +T F ++ +G G L
Sbjct: 1383 KLLGAR-----SQINAPTPAKVAKTMQDGKPFFYLTPATNSGAAGARL 1425
Score = 46 (21.3 bits), Expect = 7.3e-50, Sum P(3) = 7.3e-50
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 1 RRSLAPSQLSKRSPE-DSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEE 59
RR LAP R PE DS T ++ + + T D ED K EE
Sbjct: 795 RRKLAP-----RDPELDSDDDSTAVDSTEESEDAATE-------DEEDLSTVKTDTDMEE 842
Query: 60 MSEHENLIRQILA 72
E E+ ++ ++A
Sbjct: 843 QDEQEDGLKSLMA 855
Score = 44 (20.5 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCI 188
++H V+ P L L+ + + YE V R+ + + D M KT + +
Sbjct: 1124 RLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETL 1178
Score = 37 (18.1 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 419 TNLIKSDAVRRTMKGGENTKLGMTALSSITSLKK 452
+N++ S E L TAL + +LKK
Sbjct: 155 SNIVSSLLPASVASSSEVGGLSSTALQDLNALKK 188
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 331 (121.6 bits), Expect = 8.7e-50, Sum P(2) = 8.7e-50
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193
QV + +L LR +Q G+ ++ VT E I+ADEMGLGKT+Q I+L+
Sbjct: 615 QVKTPIPLLLRGQLREYQHIGLDWL---VT--MYEKKLNGILADEMGLGKTIQTISLLAH 669
Query: 194 LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253
L + P +I+ P+S++ NW E+ +W L G K + KL
Sbjct: 670 LACEKGNWGP----HLIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQK---ERKLKR-- 719
Query: 254 QTYGRRPVNPILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAK 312
Q + + + + SY+ + H + KN L+L DE +KN +SQ +Q+L+ ++
Sbjct: 720 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLIL-DEAQNIKNFKSQRWQSLLNFNSQ 778
Query: 313 RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372
RR+LL+GTP+QN L+E +SL+HF+ + + +EF++ + P L G + + N
Sbjct: 779 RRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTGMIEGSQEY-----N 832
Query: 373 ERL-EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
E L ++L ++ L+RR + K +P K E V+ +++ Q+ LY + + + T+
Sbjct: 833 EGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETL 892
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDL 459
G M+ ++ + L+K+CNHP+L
Sbjct: 893 ATGHF----MSVINILMQLRKVCNHPNL 916
Score = 287 (106.1 bits), Expect = 8.7e-50, Sum P(2) = 8.7e-50
Identities = 58/178 (32%), Positives = 99/178 (55%)
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKR 553
+ + KL L +L +K ++++ + T+ LD+ E+ G+ Y+RLDGS +++R
Sbjct: 2028 DCAGKLQTLAVLLRQLK-AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQR 2086
Query: 554 AKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQK 613
++E FN F F+LS+++GG G+NL GA+ +V +D DWNP D QA R R GQ
Sbjct: 2087 QALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 2146
Query: 614 KPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ--LEE 669
+ +YR +S ++EE ++++ K+ L ++ +F +R LF LEE
Sbjct: 2147 RDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEE 2204
Score = 45 (20.9 bits), Expect = 2.1e-24, Sum P(2) = 2.1e-24
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDV--ARHFSMSELRSLFQLEEN 670
EE + +Q H + C + EED+ A ++ L + EN
Sbjct: 2218 EETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2262
Score = 44 (20.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 445 SSITSLKKLCNHPD 458
SS+T K C HPD
Sbjct: 385 SSVTQCNKQCWHPD 398
Score = 41 (19.5 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 93 GVRREGARKALHDPTAPNALVLYTPPQLSAHDLL-KIDKDKIQ-VHVVVDPVLSNILRP 149
GV + AL T P AL +PPQ S H LL + ++ V P S +L P
Sbjct: 1499 GVSPSVSALALGLATTP-AL---SPPQTSGHSLLLATTSSHVPGLNSAVAPACSPVLVP 1553
Score = 39 (18.8 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSG 489
HP L + + Q +DG + + P ++ SG
Sbjct: 9 HPQLPILQTQMVSDGMTGSNPVSPASSSSPASSG 42
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 534 (193.0 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 170/559 (30%), Positives = 278/559 (49%)
Query: 147 LRPHQREGVKFMYE-CVTGVRIEDAYGCIMADEMGLGKTLQCIT-LMWTLLRQGPLAKPL 204
L+PHQ EGV ++ + + GV + + D+MGLGKTLQ I+ L + RQG L P
Sbjct: 51 LKPHQVEGVSWLIQKYLLGVNV-----VLELDQMGLGKTLQAISFLSYLKFRQG-LPGPF 104
Query: 205 IDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSF--MQTYGRRPVN 262
+ ++ P S+ W +EI ++ + L G +D + + + ++ +
Sbjct: 105 L----VLCPLSVTDGWVSEINRFTPN-LEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFL 159
Query: 263 P--ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMG-LKAKRRVLLSG 319
P +L+ +Y+ L + + DE RLKN S Y L+ RR+L++G
Sbjct: 160 PFDVLLTTYDIALVDQDFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITG 219
Query: 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379
TPIQN+L E ++L+HF + GT +F ++ G D K E + L
Sbjct: 220 TPIQNNLTELWALMHFCMPLVFGTLDQFLSAFKET---GDGLSGLDVSNDK--ETYKSLK 274
Query: 380 GIVNRCLIRRTSALLSK----YLPVKTEQVVCIKMTDLQKELYTNLIKSD--AVRRTMKG 433
I+ ++RRT +LL + LP TE V + + LQK++YT++++ + + G
Sbjct: 275 FILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSG 334
Query: 434 GENTKLGMTALSSIT-SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLL 492
G N T+L +I L+K C+HP L G E P ++ G+ L
Sbjct: 335 GSNH----TSLQNIVIQLRKACSHPYLF--------PGIE------PE----PFEEGEHL 372
Query: 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKK 552
++ S KL+VLD +L + + +++L S T TLD+ + +LR Y Y RLDGS+ ++
Sbjct: 373 VQASGKLLVLDQLLKRLH-DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEE 431
Query: 553 RAKVVETFN-KT----------SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDD 601
R ++ F+ KT SN F+FM+S++AGG GLNL+ A+ ++ ++ DWNP D
Sbjct: 432 RFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDK 491
Query: 602 QAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV-DCEEDVARHFSMSE 660
QA+ R R GQ ++ S+EE +++R K LS VV D E+ + +
Sbjct: 492 QALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERKLQLSHNVVGDNMEE--KEEDGGD 549
Query: 661 LRSL-FQLEENTISDTHDK 678
LRSL F L+ + H++
Sbjct: 550 LRSLVFGLQRFDPEEIHNE 568
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 331 (121.6 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193
QV + +L LR +Q G+ ++ VT E I+ADEMGLGKT+Q I+L+
Sbjct: 605 QVKTPIPLLLRGQLREYQHIGLDWL---VT--MYEKKLNGILADEMGLGKTIQTISLLAH 659
Query: 194 LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253
L + P +I+ P+S++ NW E+ +W L G K + KL
Sbjct: 660 LACEKGNWGP----HLIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQK---ERKLKR-- 709
Query: 254 QTYGRRPVNPILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAK 312
Q + + + + SY+ + H + KN L+L DE +KN +SQ +Q+L+ ++
Sbjct: 710 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLIL-DEAQNIKNFKSQRWQSLLNFNSQ 768
Query: 313 RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372
RR+LL+GTP+QN L+E +SL+HF+ + + +EF++ + P L G + + N
Sbjct: 769 RRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTGMIEGSQEY-----N 822
Query: 373 ERL-EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
E L ++L ++ L+RR + K +P K E V+ +++ Q+ LY + + + T+
Sbjct: 823 EGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETL 882
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDL 459
G M+ ++ + L+K+CNHP+L
Sbjct: 883 ATGHF----MSVINILMQLRKVCNHPNL 906
Score = 286 (105.7 bits), Expect = 1.1e-49, Sum P(2) = 1.1e-49
Identities = 59/178 (33%), Positives = 99/178 (55%)
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
KL L +L +K ++++ + T+ LD+ E+ G+ Y+RLDGS +++R ++
Sbjct: 2044 KLQTLAVLLRQLK-AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
E FN F F+LS+++GG G+NL GA+ +V +D DWNP D QA R R GQ +
Sbjct: 2103 ERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 2162
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ--LEENTIS 673
+YR +S ++EE ++++ K+ L ++ +F +R LF LEE + S
Sbjct: 2163 IYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSS 2220
Score = 45 (20.9 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDV--ARHFSMSELRSLFQLEEN 670
EE + +Q H + C + EED+ A ++ L + EN
Sbjct: 2230 EETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2274
Score = 39 (18.8 bits), Expect = 7.0e-19, Sum P(2) = 7.0e-19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSG 489
HP L + + Q +DG + + P ++ SG
Sbjct: 9 HPQLPVLQTQMVSDGMTGSNPVSPASSSSPASSG 42
Score = 37 (18.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 4 LAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKL-PMTKEEM 60
LAP + SP +P + + PV S T L S P L P + + M
Sbjct: 1606 LAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTM 1663
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 331 (121.6 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193
QV + +L LR +Q G+ ++ VT E I+ADEMGLGKT+Q I+L+
Sbjct: 612 QVKTPIPLLLRGQLREYQHIGLDWL---VT--MYEKKLNGILADEMGLGKTIQTISLLAH 666
Query: 194 LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253
L + P +I+ P+S++ NW E+ +W L G K + KL
Sbjct: 667 LACEKGNWGP----HLIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQK---ERKLKR-- 716
Query: 254 QTYGRRPVNPILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAK 312
Q + + + + SY+ + H + KN L+L DE +KN +SQ +Q+L+ ++
Sbjct: 717 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLIL-DEAQNIKNFKSQRWQSLLNFNSQ 775
Query: 313 RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372
RR+LL+GTP+QN L+E +SL+HF+ + + +EF++ + P L G + + N
Sbjct: 776 RRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTGMIEGSQEY-----N 829
Query: 373 ERL-EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
E L ++L ++ L+RR + K +P K E V+ +++ Q+ LY + + + T+
Sbjct: 830 EGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETL 889
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDL 459
G M+ ++ + L+K+CNHP+L
Sbjct: 890 ATGHF----MSVINILMQLRKVCNHPNL 913
Score = 285 (105.4 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 58/174 (33%), Positives = 97/174 (55%)
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
KL L +L +K ++++ + T+ LD+ E+ G+ Y+RLDGS +++R ++
Sbjct: 2044 KLQTLAVLLRQLK-AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
E FN F F+LS+++GG G+NL GA+ +V +D DWNP D QA R R GQ +
Sbjct: 2103 ERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 2162
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ--LEE 669
+YR +S ++EE ++++ K+ L ++ +F +R LF LEE
Sbjct: 2163 IYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEE 2216
Score = 45 (20.9 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDV--ARHFSMSELRSLFQLEEN 670
EE + +Q H + C + EED+ A ++ L + EN
Sbjct: 2230 EETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2274
Score = 42 (19.8 bits), Expect = 4.5e-24, Sum P(2) = 4.5e-24
Identities = 24/99 (24%), Positives = 36/99 (36%)
Query: 572 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTG-SIEEK 630
+S+A G++ GA L + P + D+ R G P ST S
Sbjct: 1817 ASQASSLGVSASGAAPLPVTMVSRLPVSKDEPETLTLRSGPPSPP------STATSFSGP 1870
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+RQ S +D E+ + L +FQL E
Sbjct: 1871 RPRRQPPPPPRSPFYLDSLEEKRKQQRSERLERIFQLSE 1909
Score = 39 (18.8 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSG 489
HP L + + Q +DG + + P ++ SG
Sbjct: 9 HPQLPILQTQMVSDGMTGSNPVSPASSSSPASSG 42
Score = 38 (18.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 5 APSQLSKRSPEDSPGIKTFPPPVKKEKRSC----TSRKPLGSVDNEDEPNSKL 53
AP + P + P K+E R+ + R PLG V P S+L
Sbjct: 988 APDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNSPRTPLGPVPVRPPPGSEL 1040
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 331 (121.6 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 98/328 (29%), Positives = 170/328 (51%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193
QV + +L LR +Q G+ ++ VT E I+ADEMGLGKT+Q I+L+
Sbjct: 613 QVKTPIPLLLRGQLREYQHIGLDWL---VT--MYEKKLNGILADEMGLGKTIQTISLLAH 667
Query: 194 LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253
L + P +I+ P+S++ NW E+ +W L G K + KL
Sbjct: 668 LACEKGNWGP----HLIIVPTSVMLNWEMELKRWCPS-FKILTYYGAQK---ERKLKR-- 717
Query: 254 QTYGRRPVNPILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAK 312
Q + + + + SY+ + H + KN L+L DE +KN +SQ +Q+L+ ++
Sbjct: 718 QGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLIL-DEAQNIKNFKSQRWQSLLNFNSQ 776
Query: 313 RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372
RR+LL+GTP+QN L+E +SL+HF+ + + +EF++ + P L G + + N
Sbjct: 777 RRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP-LTGMIEGSQEY-----N 830
Query: 373 ERL-EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
E L ++L ++ L+RR + K +P K E V+ +++ Q+ LY + + + T+
Sbjct: 831 EGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETL 890
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDL 459
G M+ ++ + L+K+CNHP+L
Sbjct: 891 ATGHF----MSVINILMQLRKVCNHPNL 914
Score = 285 (105.4 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 58/174 (33%), Positives = 97/174 (55%)
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
KL L +L +K ++++ + T+ LD+ E+ G+ Y+RLDGS +++R ++
Sbjct: 2055 KLQTLAVLLRQLK-AEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2113
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
E FN F F+LS+++GG G+NL GA+ +V +D DWNP D QA R R GQ +
Sbjct: 2114 ERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 2173
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQ--LEE 669
+YR +S ++EE ++++ K+ L ++ +F +R LF LEE
Sbjct: 2174 IYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEE 2227
Score = 45 (20.9 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 628 EEKMMQRQAHKKALSSCVVDCEEDV--ARHFSMSELRSLFQLEEN 670
EE + +Q H + C + EED+ A ++ L + EN
Sbjct: 2241 EETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNEN 2285
Score = 43 (20.2 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 16/73 (21%), Positives = 28/73 (38%)
Query: 2 RSLAPSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMS 61
R P L P P + P P+ S TSR P ++ + P + + ++
Sbjct: 1073 RPPGPVLLPPLQPNSGPLPQVLPSPLGV--LSGTSRPPTPTLSLKPAPPAPVRLSPAPPP 1130
Query: 62 EHENLIRQILAKP 74
NL++ + P
Sbjct: 1131 GSSNLLKPLTVPP 1143
Score = 39 (18.8 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSG 489
HP L + + Q +DG + + P ++ SG
Sbjct: 9 HPQLPILQTQMVSDGMTGSNPVSPASSSSPASSG 42
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 307 (113.1 bits), Expect = 3.6e-49, Sum P(2) = 3.6e-49
Identities = 101/343 (29%), Positives = 165/343 (48%)
Query: 129 DKDKIQVHVVVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
D + I+ P N LRP+Q +GV ++ + G I+ADEMGLGKTLQ
Sbjct: 177 DDESIEFQFRESPAYVNGQLRPYQIQGVNWL----VSLHKNKIAG-ILADEMGLGKTLQT 231
Query: 188 ITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGS--KAEI 245
I+ + L + P + ++AP S + NW EI +W V A + G +AE+
Sbjct: 232 ISFLGYLRYIEKIPGPFL----VIAPKSTLNNWLREINRWTPD-VNAFILQGDKEERAEL 286
Query: 246 DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
K + G +++ SYE S L K ++ DE HR+KN ES Q
Sbjct: 287 IQK-----KLLGCD--FDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQV 339
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
L ++ R+L++GTP+QN+L E ++L++F+ I AQ+F + + +S D
Sbjct: 340 LREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSS------ESTEED 393
Query: 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD 425
++ ++QL ++ L+RR + + L K E + + M+ +QK+ Y +++ D
Sbjct: 394 QDKI-----VKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKD 448
Query: 426 AVRRTMKGGENTKLGMTALSSIT-SLKKLCNHPDLVMDKIQTG 467
+ G +K T L +I L+K CNHP L D + G
Sbjct: 449 L--DAVNGSNGSKESKTRLLNIMMQLRKCCNHPYL-FDGAEPG 488
Score = 295 (108.9 bits), Expect = 3.6e-49, Sum P(2) = 3.6e-49
Identities = 60/162 (37%), Positives = 99/162 (61%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + L+ +AKL VLD +L +K ++++ S ++ LD+ E R Y+Y R+D
Sbjct: 491 YTTDEHLVYNAAKLQVLDKLLKKLK-EEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRID 549
Query: 546 GSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS + R + ++ +N S +F+F+L+++AGG G+NL A+ +V++D DWNP D QAM
Sbjct: 550 GSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAM 609
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+R ++ S+EEK+++R K L V+
Sbjct: 610 DRAHRIGQKKQVKVFRLVTDNSVEEKILERATQKLRLDQLVI 651
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 303 (111.7 bits), Expect = 4.5e-49, Sum P(2) = 4.5e-49
Identities = 92/315 (29%), Positives = 152/315 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 495 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKGPHLI- 548
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
V P+S + NW E+ W + L G + + N Y N ++V
Sbjct: 549 ----VVPASTIDNWLREVNLWCP-TLNVLCYYGSQEERKQIRFN-IHNKY--EDYN-VIV 599
Query: 267 ISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
+Y S + S+ + ++ + DEGH LKN S YQ LM + A+ R+LL+GTP+Q
Sbjct: 600 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQ 659
Query: 324 NDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
N+LLE SL++FV + ++ E R+ + + + +D + ER+ I+
Sbjct: 660 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKPADEQSIYEKERIAHAKQII 713
Query: 383 NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMT 442
++RR + K LP K +Q+ M++ Q++LY+ L R K N +
Sbjct: 714 KPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLYSGLFN-----RLKKSINNLEKNTE 768
Query: 443 ALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 769 MCNVMMQLRKMANHP 783
Score = 297 (109.6 bits), Expect = 4.5e-49, Sum P(2) = 4.5e-49
Identities = 72/197 (36%), Positives = 110/197 (55%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y SY+ LI S K L +L+ +K
Sbjct: 812 NPDLIFEDMEVMTD-FE--LHVLCKQYQHINSYQLDMDLILDSGKFRTLGCILSELKQK- 867
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 868 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 927
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 928 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 987
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 988 INQQKLKLEQDMTTVDE 1004
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 304 (112.1 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 91/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKGPHLI- 550
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 551 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN------VI 600
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + ++D + ER+ I
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKSADEQSIYEKERIAHAKQI 714
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +Q+ M++ Q++LY L R K N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN-----RLKKSINNIEKST 769
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 770 EMCNVMMQLRKMANHP 785
Score = 294 (108.6 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 814 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 869
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 929
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 930 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 990 INQQKLKLEQDMTTVDE 1006
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 304 (112.1 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 91/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKGPHLI- 550
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 551 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN------VI 600
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + ++D + ER+ I
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKSADEQSIYEKERIAHAKQI 714
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +Q+ M++ Q++LY L R K N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN-----RLKKSINNIEKST 769
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 770 EMCNVMMQLRKMANHP 785
Score = 294 (108.6 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 814 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 869
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 929
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 930 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 990 INQQKLKLEQDMTTVDE 1006
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 304 (112.1 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 91/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKGPHLI- 550
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 551 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN------VI 600
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + ++D + ER+ I
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKSADEQSIYEKERIAHAKQI 714
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +Q+ M++ Q++LY L R K N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN-----RLKKSINNIEKST 769
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 770 EMCNVMMQLRKMANHP 785
Score = 294 (108.6 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 814 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 869
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 929
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 930 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 990 INQQKLKLEQDMTTVDE 1006
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 304 (112.1 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 91/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 500 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKGPHLI- 553
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 554 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN------VI 603
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 604 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 663
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + ++D + ER+ I
Sbjct: 664 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKSADEQSIYEKERIAHAKQI 717
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +Q+ M++ Q++LY L R K N +
Sbjct: 718 IKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFN-----RLKKSINNMEKNT 772
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 773 EMCNVMMQLRKMANHP 788
Score = 294 (108.6 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 817 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 872
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 873 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 932
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 933 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 992
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 993 INQQKLKLEQDMTTIDE 1009
>ASPGD|ASPL0000044476 [details] [associations]
symbol:AN2255 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001660 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50105 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000037 RefSeq:XP_659859.1
ProteinModelPortal:Q5BB25 EnsemblFungi:CADANIAT00008947
GeneID:2874753 KEGG:ani:AN2255.2 HOGENOM:HOG000172620 OMA:ADEAHKM
OrthoDB:EOG4S7NZ2 Uniprot:Q5BB25
Length = 1832
Score = 274 (101.5 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 55/155 (35%), Positives = 96/155 (61%)
Query: 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKK 552
+ELS + ++ ++ + DK+++ S TLD ERL K+ +Y RLDG
Sbjct: 1344 VELSVRAVITKRIIDE-SIRAGDKVLVFSQSLHTLDYLERLLKVTNRQYSRLDGQTPAAT 1402
Query: 553 RAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612
R + FN+ + ++++S++AGG GLN+ GANR+++FD ++P ++QA+ R +R GQ
Sbjct: 1403 RQAATKKFNQGEKQ-VYLISTRAGGLGLNITGANRVIIFDFSFSPIWEEQAIGRAYRLGQ 1461
Query: 613 KKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
+KP FVYRF++ G+ +E + ++ +K L+ VVD
Sbjct: 1462 QKPVFVYRFIAGGTFQEIIHEKATYKTQLAVRVVD 1496
Score = 241 (89.9 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 60/192 (31%), Positives = 102/192 (53%)
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQ 345
+++ DE H++KN +S T QA M ++K R+ L+G+P+ N+L +Y+++V++++ LG+
Sbjct: 1109 IIIADEAHKMKNPDSATSQAAMQFRSKSRIALTGSPLANNLGDYYTMVNWISYDYLGSFL 1168
Query: 346 EFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQV 405
EF+ Y PI G + ++ E+ K+ +L+ L I+ + R L LP K E V
Sbjct: 1169 EFKANYIEPIKEGLYADSTYGEKRKSLMKLQVLKQILEPKINRADITALEGDLPPKVEFV 1228
Query: 406 VCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLC-NHPDLVMDKI 464
+ + +T +QKE Y D + G ++ T L S S+ LC NHP DK+
Sbjct: 1229 LTVPLTKIQKEAY------DMYAAFILQGRMDEVTQTQLWSWLSILGLCCNHPACFQDKL 1282
Query: 465 QTGADGFENAMN 476
+ A G N
Sbjct: 1283 VSQAQGSSKKTN 1294
Score = 141 (54.7 bits), Expect = 9.0e-49, Sum P(3) = 9.0e-49
Identities = 42/154 (27%), Positives = 77/154 (50%)
Query: 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL- 195
V + P + ++ HQ G++FM+ + + ++ GC++A MGLGKT+Q I+L+ T+
Sbjct: 929 VYLHPHIGQRVKLHQLSGIQFMWRELVEDKSQE--GCLLAHTMGLGKTMQVISLLVTITA 986
Query: 196 ----------RQGPLA-KPLID----KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGG 240
+Q P +P D + +++ PSSL++NW +E W V
Sbjct: 987 AANSPDPRIQQQVPEGFRPRNDLPEARTLVICPSSLIENWRDEFVMWTPQDVLLTVRQVS 1046
Query: 241 SKAEIDNKLNSFMQTYGRRPVNPILVISYETFRS 274
S+ +D +L Y + +L+IS++ FR+
Sbjct: 1047 SEDNMDVRLAEVSMWYEK---GGVLLISFDIFRN 1077
Score = 48 (22.0 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 21/92 (22%), Positives = 34/92 (36%)
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
L F+ VH + L K+ +R D ++ + LE+L+ + NR
Sbjct: 1332 LRIFANVHDLKAVELSVRAVITKRIIDESIRAGDKVLVFSQSLHTLDYLERLLKVTNRQY 1391
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
R L P T Q K +K++Y
Sbjct: 1392 SR-----LDGQTPAATRQAATKKFNQGEKQVY 1418
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 309 (113.8 bits), Expect = 9.0e-49, Sum P(2) = 9.0e-49
Identities = 95/321 (29%), Positives = 159/321 (49%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 165 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 216
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW NE +W+ A I G K D + +F++ + V
Sbjct: 217 -HMVLVPKSTLHNWMNEFKRWVPTLRAVCLI--GDK---DQRA-AFVRDVLLPGEWDVCV 269
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 270 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 329
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ + ++++F ++T ++C D K ERL ++ L
Sbjct: 330 HELWALLNFLLPDVFNSSEDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 377
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 378 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKLDK--MRLLNI 434
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 435 LMQLRKCCNHPYL-FDGAEPG 454
Score = 288 (106.4 bits), Expect = 9.0e-49, Sum P(2) = 9.0e-49
Identities = 60/162 (37%), Positives = 98/162 (60%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 457 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 515
Query: 546 GSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + +N+ S++F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 516 GQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 575
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 576 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 617
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 300 (110.7 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 91/315 (28%), Positives = 152/315 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 492 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLFQEGNKGPHLI- 545
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
V P+S + NW E+ W + L G + + N Y N ++V
Sbjct: 546 ----VVPASTIDNWLREVNLWCPS-LNVLCYYGSQEERKQIRFN-IHNKY--EDYN-VIV 596
Query: 267 ISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
+Y S + S+ + ++ + DEGH LKN S YQ LM + A+ R+LL+GTP+Q
Sbjct: 597 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQ 656
Query: 324 NDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
N+LLE SL++FV + ++ E R+ + + + +D + ER+ I+
Sbjct: 657 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKPADEQSIYEKERIAHAKQII 710
Query: 383 NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMT 442
++RR + K LP K +++ M++ Q++LY+ L R K N +
Sbjct: 711 KPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFN-----RLKKSINNLEKNTE 765
Query: 443 ALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 766 MCNVMMQLRKMANHP 780
Score = 297 (109.6 bits), Expect = 9.5e-49, Sum P(2) = 9.5e-49
Identities = 72/197 (36%), Positives = 110/197 (55%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y SY+ LI S K L +L+ +K
Sbjct: 809 NPDLIFEDMEVMTD-FE--LHVLCKQYQHINSYQLDMDLILDSGKFRALGCILSELKQK- 864
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 865 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 924
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 925 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 984
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 985 INQQKLKLEQDMTTVDE 1001
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 311 (114.5 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 105/390 (26%), Positives = 188/390 (48%)
Query: 89 TKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKI--QVHVVVD-PVL-- 143
T+A+ +++ N+ L P +S D +D K+ ++H V+ P +
Sbjct: 809 TRAVRIQQSNIHSGNTSGKGSNSAELEAP--ISEEDK-NLDYFKVAHRIHEEVEQPKIFV 865
Query: 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203
L+ +Q +G+++M + G I+ADEMGLGKT+Q I + L+ + P
Sbjct: 866 GGTLKDYQLKGLEWMLSLYNN----NLNG-ILADEMGLGKTIQTIAFITYLIEKKNQQGP 920
Query: 204 LIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNP 263
+ I+ P S + NW E KW V + G + L +Q+ R
Sbjct: 921 FL----IIVPLSTLTNWIMEFEKWAPS-VKKIAYKGPPQ------LRKTLQSQIRSSNFN 969
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL-KAKRRVLLSGTPI 322
+L+ ++E +L + + ++ DEGHR+KN +S+ L ++ R++L+GTP+
Sbjct: 970 VLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPL 1029
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR--GQDSCASDAERTKANERLEQLIG 380
QN+L E ++L++FV I + + F + + TP GQD + E +A +++L
Sbjct: 1030 QNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEE--EALLIIKRLHK 1087
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
++ L RR + K LP K E+V+ ++ LQ +LY + K + GE K G
Sbjct: 1088 VLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGML---FVDGEKGKTG 1144
Query: 441 MTAL-SSITSLKKLCNHPDLVMDKIQTGAD 469
+ L +++ LKK+CNHP + + ++ D
Sbjct: 1145 IKGLQNTVMQLKKICNHP-FIFEDVERAID 1173
Score = 290 (107.1 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 81/248 (32%), Positives = 125/248 (50%)
Query: 434 GENTKLGMTAL-SSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLL 492
GE K G+ L +++ LKK+CNHP + + ++ D P+G LL
Sbjct: 1138 GEKGKTGIKGLQNTVMQLKKICNHP-FIFEDVERAID---------PSGTNVD-----LL 1182
Query: 493 IELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKK 552
+ K +LD +L + +T K ++ TQ + + E + + +KY+RLDGS
Sbjct: 1183 WRAAGKFELLDRILPKLFLT-GHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDD 1241
Query: 553 RAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
R ++ FN ++ +IFMLS++AGG GLNL A+ +++FD DWNP D QA R R G
Sbjct: 1242 RCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIG 1301
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLF--QLEE 669
Q K + R ++ SIEE ++ R +K L V+ + + S E R F L E
Sbjct: 1302 QTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNK--STPEEREAFLRSLLE 1359
Query: 670 NTISDTHD 677
+ D HD
Sbjct: 1360 HDGDDDHD 1367
Score = 38 (18.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 514 DDKI-VLVSNYTQTLDLFERLSKLR 537
DD++ L+S + L LF++L K R
Sbjct: 1375 DDELNELISRTDEELVLFKKLDKER 1399
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 304 (112.1 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 91/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 499 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNKGPHLI- 552
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 553 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYN------VI 602
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 603 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 662
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + +D + ER+ I
Sbjct: 663 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKPADEQSIYEKERIAHAKQI 716
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +++ M++ Q++LY NL R K N +
Sbjct: 717 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFN-----RLKKSINNMEKNT 771
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 772 EMCNVMMQLRKMANHP 787
Score = 290 (107.1 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 70/197 (35%), Positives = 110/197 (55%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 816 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 871
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 872 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 931
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + + G+IEE M++
Sbjct: 932 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLK 991
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 992 INQQKLKLEQDMTTVDE 1008
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 306 (112.8 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 95/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 179 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 230
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E KW+ + I G K + +F++ + V
Sbjct: 231 -HMVLVPKSTLHNWMSEFKKWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 283
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 284 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 343
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 344 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 391
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 392 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 448
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 449 LMQLRKCCNHPYL-FDGAEPG 468
Score = 288 (106.4 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 471 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 529
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 530 GQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 589
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 590 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 385 (140.6 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 91/278 (32%), Positives = 154/278 (55%)
Query: 365 DAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS 424
D A+E+L +L ++ ++RRT + LP KTE+++ ++++D+Q E Y N++
Sbjct: 638 DLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTK 697
Query: 425 DAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAA 484
+ +G + K + L+ + LKK NHP + +G ++L
Sbjct: 698 NYAALN-EGTKGQKQSL--LNIMMELKKASNHPFMFPSAETKILEGSTRREDVL------ 748
Query: 485 SYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRL 544
+ LI S K+M+LD +LA +K ++++ S + LD+ + RGY Y RL
Sbjct: 749 -----RALITSSGKMMLLDQLLAKLKRD-GHRVLIFSQMVKMLDILGDYMEYRGYTYQRL 802
Query: 545 DGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQA 603
DG++ R +E +N S++F F+LS++AGG G+NL+ A+ +++FD DWNP D QA
Sbjct: 803 DGTIPSASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQA 862
Query: 604 MARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKAL 641
MAR R GQ KP VYR +S ++EE++++R +K L
Sbjct: 863 MARAHRIGQTKPVSVYRLVSKDTVEEEVIERARNKLLL 900
Score = 209 (78.6 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 64/202 (31%), Positives = 100/202 (49%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLM-W---TLLRQGPLAK 202
L+ Q +GV FM V+ + ++ADEMGLGKT+Q + + W +QGP
Sbjct: 446 LKEFQVKGVNFM--AFNWVKNRNV---VLADEMGLGKTVQTVAFISWLRHVRRQQGPF-- 498
Query: 203 PLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSF-MQTYG--RR 259
++V P S + +W W + G++A N L + + G RR
Sbjct: 499 ------VVVVPLSTMPSWAETFDNWSPD--LNYVVYNGNEAS-RNVLKEYELMVDGNPRR 549
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319
P +L+ +YE +S L + + DE HRLKN +SQ Y L + R+L++G
Sbjct: 550 PKFNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITG 609
Query: 320 TPIQNDLLEYFSLVHFVNQGIL 341
TPIQN+L E +L+ F+N G++
Sbjct: 610 TPIQNNLAELSALLDFLNPGLV 631
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 306 (112.8 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 63/162 (38%), Positives = 99/162 (61%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + + L+ S K++VLD +L +K ++++ S ++ LD+ E R YKY R+D
Sbjct: 479 YTTDEHLVYNSGKMVVLDKLLKRLK-AQGSRVLIFSQMSRVLDILEDYCVFREYKYSRID 537
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G + R ++ +NK +E F+F+L+++AGG G+NL A+ +++FD DWNP D QAM
Sbjct: 538 GGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAM 597
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K +VYRFL +IEEK+++R A K L V+
Sbjct: 598 DRAHRIGQTKQVYVYRFLVDNTIEEKVLERAAQKLHLDRLVI 639
Score = 288 (106.4 bits), Expect = 2.5e-48, Sum P(2) = 2.5e-48
Identities = 102/370 (27%), Positives = 172/370 (46%)
Query: 97 EGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVV--DPV-LSNILRPHQRE 153
+G + A A + V T + A +LLK +K V P + +R +Q
Sbjct: 134 KGKKGASRQGGASSGRVRRTEAEEDA-ELLKDEKHGGSAETVFRESPAFIQGTMRDYQIA 192
Query: 154 GVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAP 213
G+ ++ E+ I+ADEMGLGKTLQ I+ + L + P +++ P
Sbjct: 193 GLNWLISLH-----ENGISGILADEMGLGKTLQTISFLGYLRHIMGITGP----HLVIVP 243
Query: 214 SSLVKNWCNEITKWLGGRVAALPIDGGSK---AEIDNKLNSFMQTYGRRPVNPILVISYE 270
S + NW E KW V L + G + A I +L +++ + + SYE
Sbjct: 244 KSTLDNWKREFGKWTP-EVNVLVLQGAKEERAALIAERLVD--ESFD------VCITSYE 294
Query: 271 TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYF 330
S L K ++ DE HR+KN ES Q + ++ R+L++GTP+QN++ E +
Sbjct: 295 MILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELW 354
Query: 331 SLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRT 390
+L++F+ + G ++ F + + GQDS + ++QL ++ L+RR
Sbjct: 355 ALLNFLLPDVFGDSEAFDQWFSG---EGQDS----------DTVVQQLHRVLRPFLLRRV 401
Query: 391 SALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSIT-S 449
A + K L K E + +KMT++Q+ Y +++ D + G + T L +I
Sbjct: 402 KADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDI--DAVNGANGKRESKTRLLNIVMQ 459
Query: 450 LKKLCNHPDL 459
L+K CNHP L
Sbjct: 460 LRKCCNHPYL 469
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 303 (111.7 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 94/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 180 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 231
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E +W+ + I G K + +F++ + V
Sbjct: 232 -HMVLVPKSTLHNWMSEFKRWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 284
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 285 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 392
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 449
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 450 LMQLRKCCNHPYL-FDGAEPG 469
Score = 290 (107.1 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 60/162 (37%), Positives = 98/162 (60%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 530
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 531 GQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 590
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 591 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 303 (111.7 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 94/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 180 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 231
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E +W+ + I G K + +F++ + V
Sbjct: 232 -HMVLVPKSTLHNWMSEFKRWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 284
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 285 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 392
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 449
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 450 LMQLRKCCNHPYL-FDGAEPG 469
Score = 290 (107.1 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 60/162 (37%), Positives = 98/162 (60%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 530
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 531 GQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 590
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 591 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 303 (111.7 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 94/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 180 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 231
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E +W+ + I G K + +F++ + V
Sbjct: 232 -HMVLVPKSTLHNWMSEFKRWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 284
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 285 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 392
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 449
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 450 LMQLRKCCNHPYL-FDGAEPG 469
Score = 290 (107.1 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 60/162 (37%), Positives = 98/162 (60%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 530
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 531 GQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 590
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 591 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 298 (110.0 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 90/316 (28%), Positives = 153/316 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+P+Q+ G+ ++ V G I+ADEMGLGKT+Q I + L ++G LI
Sbjct: 497 LKPYQKVGLNWL----ALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLI- 550
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E+ W +V + +I ++S + Y ++
Sbjct: 551 ----VVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYN------VI 600
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S + S+ + ++ + DEGH LKN S YQ LM + A R+LL+GTP+
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 323 QNDLLEYFSLVHFVNQGILGTA-QEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
QN+LLE SL++FV + ++ E R+ + + + ++D + ER+ I
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK------TKSADEQSIYEKERIAHAKQI 714
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ ++RR + K LP K +++ M++ Q++LY L R K N +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFN-----RLKKSINNLEKNT 769
Query: 442 TALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 770 EMCNVMMQLRKMANHP 785
Score = 294 (108.6 bits), Expect = 3.3e-48, Sum P(2) = 3.3e-48
Identities = 71/197 (36%), Positives = 111/197 (56%)
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAA--SYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
+PDL+ + ++ D FE +++L Y +++ LI S K VL +L+ +K
Sbjct: 814 NPDLIFEDMEVMTD-FE--LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK- 869
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
D++VL S +T LD+ E L K ++Y+RLDG I +R +++ FN + F+F+LS+
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 929
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQ 633
KAGG G+NL AN +++ D D NP ND QA R R GQ K V + +S G+IEE M++
Sbjct: 930 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Query: 634 RQAHKKALSSCVVDCEE 650
K L + +E
Sbjct: 990 INQQKLKLEQDMTTVDE 1006
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 331 (121.6 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 99/324 (30%), Positives = 164/324 (50%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ--CITLMWTLLRQGPLAKPL 204
LR +Q++GV ++ + +G I+ D+MGLGKTLQ CI LR+ K
Sbjct: 1272 LRKYQQDGVNWL----AFLNKYHLHG-ILCDDMGLGKTLQTICIIASDQYLRKEDYEKTR 1326
Query: 205 -IDK----AIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRR 259
++ ++I+ P SL +W NE ++ + + GG + L +
Sbjct: 1327 SVESRALPSLIICPPSLTGHWENEFDQY-APFLKVVVYAGGPTVRLT--LRPQLSDAD-- 1381
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319
I+V SY+ R+ +VL+K E + DEGH +KN +S+ +A+ + A R++L+G
Sbjct: 1382 ----IIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTG 1437
Query: 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379
TPIQN++LE +SL F+ G LGT + F++++ PI ++S S E+ LE L
Sbjct: 1438 TPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALH 1497
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS--DAVRRTMKGGENT 437
V ++RR + LP K Q ++ DLQK+LY + K + V + ++ E
Sbjct: 1498 KQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIA 1557
Query: 438 KLGMTALSSITSLKKLCNHPDLVM 461
++ ++KLCNHP LV+
Sbjct: 1558 DGKQHIFQALQYMRKLCNHPALVL 1581
Score = 272 (100.8 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 81/273 (29%), Positives = 130/273 (47%)
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVM-----------DKI-QTGADG 470
+ + V + ++ E ++ ++KLCNHP LV+ D + QTG D
Sbjct: 1543 QKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTGLD- 1601
Query: 471 FENAMNI--LPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLD 528
+ +N L ++ G ++ K D + + + + ++ LD
Sbjct: 1602 LHDIINAPKLSALRTLLFECGIGEEDIDKKASQ-DQNFPIQNVISQHRALIFCQLKDMLD 1660
Query: 529 LFER-LSK--LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA 585
+ E L K + Y+RLDGS+ + R KVV FN+ + +L++K GG GLNL GA
Sbjct: 1661 MVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGA 1720
Query: 586 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645
+ ++ + DWNP ND QAM R R GQKK VYR ++ G++EEK+M Q K ++S V
Sbjct: 1721 DTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTV 1780
Query: 646 VDCEEDVARHFSMSELRSLFQLEENTISDTHDK 678
V+ + +L LF + T D +K
Sbjct: 1781 VNQQNSGLASMDTHQLLDLFDPDNVTSQDNEEK 1813
Score = 44 (20.5 bits), Expect = 3.5e-48, Sum P(3) = 3.5e-48
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 41 GSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPI 79
G D + P + + E + ++ AKPFK+PI
Sbjct: 1228 GIADPKGLPEELVASRERERDFIQQMMDPSKAKPFKLPI 1266
>UNIPROTKB|Q47YP1 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 336 (123.3 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 99/335 (29%), Positives = 177/335 (52%)
Query: 130 KDKIQVHVVVDPV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCI 188
KD QV + P L+ LR +Q +G+ ++ +R G I+AD+MGLGKT+Q +
Sbjct: 644 KDFQQVTTIPVPEGLNATLRTYQHQGLNWLQF----LREYQLNG-ILADDMGLGKTIQTL 698
Query: 189 TLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK 248
+ +QG L KP++ IVAP+S++ NW NEI K+ +++ + G + E
Sbjct: 699 AHLLIEKQQGRLTKPIL----IVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGC 753
Query: 249 LNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMG 308
L G V+ I++ SY + + ++ DE H +KN +++ YQA +
Sbjct: 754 LEGVEN--GENQVD-IIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLT 810
Query: 309 LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAER 368
LKA+ ++ L+GTP++N L E+++ +F+ G LG ++F K + TPI + + ER
Sbjct: 811 LKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPIEKH-----GELER 865
Query: 369 TKA-NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-IKSDA 426
+ N+R++ I +RRT ++ LP KTE + +++ Q ELY ++ + D+
Sbjct: 866 KQLLNQRIKPFI-------LRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDS 918
Query: 427 VRRTMKGGENTKLG-MTALSSITSLKKLCNHPDLV 460
+ + + K + L ++ L+++CNHP L+
Sbjct: 919 RLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Score = 255 (94.8 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 65/174 (37%), Positives = 98/174 (56%)
Query: 489 GKLLIELSAKLMVLDTMLAVIKMTTDD--KIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
G + SAKL D ++ + D+ KI++ S +T L L E G YV+L G
Sbjct: 957 GAKKVNQSAKL---DYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG 1013
Query: 547 SMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
S T KR +VV+ F + +F++S +AGG GLNL A+ ++ FDP WNPA ++QA R
Sbjct: 1014 STT--KRQEVVDKFQRGEVP-VFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDR 1070
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE 660
+R GQ KP FVY+ + SIEEK+ + Q +K L+ ++ EE S+++
Sbjct: 1071 AYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAKALLS-EEVSDNKLSLTD 1123
Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 467 GADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLD 503
G + EN ++I+ T YA K + +VLD
Sbjct: 756 GVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLD 792
>TIGR_CMR|CPS_3404 [details] [associations]
symbol:CPS_3404 "Snf2 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:YP_270079.1 ProteinModelPortal:Q47YP1 STRING:Q47YP1
GeneID:3519815 KEGG:cps:CPS_3404 PATRIC:21469757
HOGENOM:HOG000294304 BioCyc:CPSY167879:GI48-3433-MONOMER
Uniprot:Q47YP1
Length = 1134
Score = 336 (123.3 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 99/335 (29%), Positives = 177/335 (52%)
Query: 130 KDKIQVHVVVDPV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCI 188
KD QV + P L+ LR +Q +G+ ++ +R G I+AD+MGLGKT+Q +
Sbjct: 644 KDFQQVTTIPVPEGLNATLRTYQHQGLNWLQF----LREYQLNG-ILADDMGLGKTIQTL 698
Query: 189 TLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK 248
+ +QG L KP++ IVAP+S++ NW NEI K+ +++ + G + E
Sbjct: 699 AHLLIEKQQGRLTKPIL----IVAPTSVIFNWANEIDKFTP-QLSYQVLHGNKRHEQFGC 753
Query: 249 LNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMG 308
L G V+ I++ SY + + ++ DE H +KN +++ YQA +
Sbjct: 754 LEGVEN--GENQVD-IIITSYALITKDLAHYTDRKFYYLVLDEAHYIKNTKTKLYQAFLT 810
Query: 309 LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAER 368
LKA+ ++ L+GTP++N L E+++ +F+ G LG ++F K + TPI + + ER
Sbjct: 811 LKAQHKLCLTGTPMENHLGEFWAQFNFLLPGFLGGQRQFTKLFRTPIEKH-----GELER 865
Query: 369 TKA-NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-IKSDA 426
+ N+R++ I +RRT ++ LP KTE + +++ Q ELY ++ + D+
Sbjct: 866 KQLLNQRIKPFI-------LRRTKDKIATELPPKTEIIQTLRIEGKQAELYESVRLAMDS 918
Query: 427 VRRTMKGGENTKLG-MTALSSITSLKKLCNHPDLV 460
+ + + K + L ++ L+++CNHP L+
Sbjct: 919 RLKDIIADKGLKRSQIEVLDALLKLRQVCNHPKLL 953
Score = 255 (94.8 bits), Expect = 3.6e-48, Sum P(2) = 3.6e-48
Identities = 65/174 (37%), Positives = 98/174 (56%)
Query: 489 GKLLIELSAKLMVLDTMLAVIKMTTDD--KIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
G + SAKL D ++ + D+ KI++ S +T L L E G YV+L G
Sbjct: 957 GAKKVNQSAKL---DYLMETLPEQIDEGRKILIFSQFTSMLSLIEDELIDAGIGYVKLTG 1013
Query: 547 SMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
S T KR +VV+ F + +F++S +AGG GLNL A+ ++ FDP WNPA ++QA R
Sbjct: 1014 STT--KRQEVVDKFQRGEVP-VFLISLRAGGVGLNLTAADTVIHFDPWWNPAVENQATDR 1070
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE 660
+R GQ KP FVY+ + SIEEK+ + Q +K L+ ++ EE S+++
Sbjct: 1071 AYRIGQNKPVFVYKLIIENSIEEKIQKIQQNKAELAKALLS-EEVSDNKLSLTD 1123
Score = 37 (18.1 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 467 GADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLD 503
G + EN ++I+ T YA K + +VLD
Sbjct: 756 GVENGENQVDIIITSYALITKDLAHYTDRKFYYLVLD 792
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 304 (112.1 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 97/347 (27%), Positives = 172/347 (49%)
Query: 127 KIDKDKIQV-HVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTL 185
K+ ++++ V V V +L LR +Q++G+ ++ G I+ADEMGLGKT+
Sbjct: 675 KVQEEQLSVVDVPVPSLLRGNLRTYQKQGLNWLASLYNN----HTNG-ILADEMGLGKTI 729
Query: 186 QCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEI 245
Q I+L+ L + P +IV P+S++ NW E ++ G L G +
Sbjct: 730 QTISLLAYLACEKENWGP----HLIVVPTSVLLNWEMEFKRFAPG-FKVLTYYGSPQQRK 784
Query: 246 DNKLNSFMQTYGRRPVNPILVISYE-TFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQ 304
+ + + + + + ++SY+ + S K +VL DE H +KN S +Q
Sbjct: 785 EKR-----KGWNKPDAFHVCIVSYQLVVQDQHSFKRKRWQYMVL-DEAHNIKNFRSTRWQ 838
Query: 305 ALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFV-------NQGILGTAQ--EFRKQYETP- 354
AL+ +RR+LL+GTP+QN+L E +SL++F+ + + G A F++ + P
Sbjct: 839 ALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVIDGKKVSGFADLDAFQQWFGRPV 898
Query: 355 --ILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTD 412
I+ + D E K +L Q ++ L+RR A + K +P K E +V K++
Sbjct: 899 DKIIETGQNFGQDKETKKTVAKLHQ---VLRPYLLRRLKADVEKQMPAKYEHIVYCKLSK 955
Query: 413 LQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
Q+ LY + + + T+ G M+ ++ + L+K+CNHP+L
Sbjct: 956 RQRFLYDDFMSRAQTKATLASGNF----MSIVNCLMQLRKVCNHPNL 998
Score = 292 (107.8 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 67/210 (31%), Positives = 109/210 (51%)
Query: 463 KIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSN 522
K+ N ++ L T ++ LL KL L +L +K + ++ +
Sbjct: 1212 KVMQNCFEVSNPLHQLQTKLTIAFPDKSLLQYDCGKLQKLAILLQQLK-DNGHRALIFTQ 1270
Query: 523 YTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNL 582
T+ LD+ E+ GY Y+RLDG+ I+ R + E FN S +F+LSS++GG G+NL
Sbjct: 1271 MTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINL 1330
Query: 583 IGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALS 642
GA+ ++ +D DWNPA D Q R R GQ + +YRF+S +IE ++++ K+ L
Sbjct: 1331 TGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLD 1390
Query: 643 SCVVDCEEDVARHFSMSELRSLF--QLEEN 670
+ V+ + +FS +R L +L EN
Sbjct: 1391 NVVIQEGDFTTDYFSKLSVRDLLGSELPEN 1420
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 300 (110.7 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 100/369 (27%), Positives = 176/369 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 163 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 214
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW NE +W+ A I G + E +F++ + V
Sbjct: 215 -HMVLVPKSTLYNWMNEFKRWVPSLKAVCLI--GDREE----RTAFIRDTLLPGEWDVCV 267
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE +V K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 268 TSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 327
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ + ++++F ++T ++C D TK ERL ++ L
Sbjct: 328 HELWALLNFLLPDVFNSSEDFDAWFDT------NNCLGD---TKLVERLHT---VLRPFL 375
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K L K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 376 LRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKD-IDILNSAGKMDK--MRLLNV 432
Query: 447 ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY-KSGKLLIELSAKLMVLDTM 505
+ L+K CNHP L D + G + ++ +G K L E +++++ M
Sbjct: 433 LMQLRKCCNHPYL-FDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQGSRVLIFSQM 491
Query: 506 LAVIKMTTD 514
V+ + D
Sbjct: 492 TRVLDILED 500
Score = 291 (107.5 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 62/162 (38%), Positives = 99/162 (61%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y Y RLD
Sbjct: 455 YTTDLHLVVNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLD 513
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++R + FN+ S++F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 514 GQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAM 573
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+RF++ ++EE++++R K L S V+
Sbjct: 574 DRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVI 615
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 303 (111.7 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 94/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 179 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 230
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E +W+ + I G K + +F++ + V
Sbjct: 231 -HMVLVPKSTLHNWMSEFKRWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 283
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 284 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 343
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 344 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 391
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 392 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 448
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 449 LMQLRKCCNHPYL-FDGAEPG 468
Score = 288 (106.4 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 471 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 529
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 530 GQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 589
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 590 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 631
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 303 (111.7 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 94/321 (29%), Positives = 157/321 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q G+ ++ E+ I+ADEMGLGKTLQ I+L+ + + P
Sbjct: 180 LRDYQVRGLNWLISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP--- 231
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++ P S + NW +E +W+ + I G K + +F++ + V
Sbjct: 232 -HMVLVPKSTLHNWMSEFKRWVPTLRSVCLI--GDKEQ----RAAFVRDVLLPGEWDVCV 284
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
SYE SV K ++ DE HR+KN +S+ + + K R+LL+GTP+QN+L
Sbjct: 285 TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 344
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL++F+ + +A +F ++T ++C D K ERL ++ L
Sbjct: 345 HELWSLLNFLLPDVFNSADDFDSWFDT------NNCLGDQ---KLVERLHM---VLRPFL 392
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A + K LP K E + + ++ +Q+E YT ++ D + G+ K M L+
Sbjct: 393 LRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKD-IDILNSAGKMDK--MRLLNI 449
Query: 447 ITSLKKLCNHPDLVMDKIQTG 467
+ L+K CNHP L D + G
Sbjct: 450 LMQLRKCCNHPYL-FDGAEPG 469
Score = 288 (106.4 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K++VLD +L +K ++++ S T+ LD+ E R Y+Y RLD
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLK-EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 530
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G +R + +N+ S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 531 GQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 590
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K V+RF++ ++EE++++R K L S V+
Sbjct: 591 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 336 (123.3 bits), Expect = 6.5e-48, Sum P(3) = 6.5e-48
Identities = 102/328 (31%), Positives = 165/328 (50%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWT 193
QV V ++ LR +Q G+ +M VT E I+ADEMGLGKT+Q I+L+
Sbjct: 545 QVKTPVPFLIRGQLREYQMVGLDWM---VT--LYEKNLNGILADEMGLGKTIQTISLLAH 599
Query: 194 LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFM 253
+ + P +IV P+S++ NW E KW + L G +K + K +M
Sbjct: 600 MACSESIWGP----HLIVVPTSVILNWEMEFKKWCPA-LKILTYFGTAKERAE-KRKGWM 653
Query: 254 QTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKR 313
+ + + SY+T + ++ DE +KN +SQ +QAL+ ++A+R
Sbjct: 654 KPNCFH----VCITSYKTVTQDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARR 709
Query: 314 RVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANE 373
R+LL+GTP+QN L+E +SL+HF+ I + +F+ + P L G +
Sbjct: 710 RLLLTGTPLQNSLMELWSLMHFLMPTIFSSHDDFKDWFSNP-LTGMMEGNMEFNAPLIG- 767
Query: 374 RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
RL + ++ ++RR + K LP KTE +V ++ Q+ LY + + RR+ K
Sbjct: 768 RLHK---VLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMS----RRSTK- 819
Query: 434 GENTKLG--MTALSSITSLKKLCNHPDL 459
EN K G M+ L+ + L+K CNHP+L
Sbjct: 820 -ENLKSGNMMSVLNIVMQLRKCCNHPNL 846
Score = 267 (99.0 bits), Expect = 6.5e-48, Sum P(3) = 6.5e-48
Identities = 59/188 (31%), Positives = 100/188 (53%)
Query: 492 LIELSA-KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTI 550
LIE KL L +L + + + ++ + ++ LD+ + GY+Y RLDG+ +
Sbjct: 1182 LIEYDCGKLQTLAVLLRQLYLYKH-RCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGV 1240
Query: 551 KKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
++R ++E FN F F+LS+++GG G+NL GA+ ++ +D DWNP D QA R R
Sbjct: 1241 EQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRI 1300
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE-LRSLFQLEE 669
GQ + +YR +S +IEE ++++ K+ L +D F S+ +R LF E
Sbjct: 1301 GQTRNVSIYRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLFDGEN 1360
Query: 670 NTISDTHD 677
++ D
Sbjct: 1361 VEVTAVAD 1368
Score = 45 (20.9 bits), Expect = 6.5e-48, Sum P(3) = 6.5e-48
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 462 DKIQTGADGFENAMNILPTGYAASYKSGKLLIE 494
D + A N+ GY +S +S K LIE
Sbjct: 876 DPSSSSASQIPEIFNLSKIGYQSSVRSAKPLIE 908
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 351 (128.6 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 84/262 (32%), Positives = 143/262 (54%)
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
++RR + K LP K+E+++ ++++D+Q E Y N++ + R + G + + ++ L+
Sbjct: 605 ILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNY--RALTGHTDGRGQLSLLN 662
Query: 446 SITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTM 505
+ LKK+ NHP L + G + G +I S K+++LD +
Sbjct: 663 IVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRG----------IIMNSGKMVLLDKL 712
Query: 506 LAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-S 564
L +K ++++ S + L++ LRGY Y RLDG++ R ++ FN S
Sbjct: 713 LQRLKHD-GHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDS 771
Query: 565 NEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLST 624
+F+F+LS++AGG G+NL A+ +++FD DWNP D QAMAR R GQK VYRFLS
Sbjct: 772 PDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSK 831
Query: 625 GSIEEKMMQRQAHKKALSSCVV 646
++EE +++R K L ++
Sbjct: 832 DTVEEDILERARRKMILEYAII 853
Score = 248 (92.4 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 73/250 (29%), Positives = 122/250 (48%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q + + L+ P + IV P S V W + W +
Sbjct: 412 ILADEMGLGKTVQTVCFLSYLVHSLKQHGPFL----IVVPLSTVPAWQETLANWTPD-LN 466
Query: 234 ALPIDGGSKAEID-NKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEG 292
++ G +++ + + ++ T R+ IL+ +YE L+ + DE
Sbjct: 467 SICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEA 526
Query: 293 HRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE 352
HRLKN ES Y+ L + R+L++GTP+QN+L E SLV+F+ G E ++
Sbjct: 527 HRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELN--FD 584
Query: 353 TPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTD 412
P Q+ D + ERL+ I +RR + K LP K+E+++ ++++D
Sbjct: 585 QPNAE-QERDIRDLQ-----ERLQPFI-------LRRLKKDVEKSLPSKSERILRVELSD 631
Query: 413 LQKELYTNLI 422
+Q E Y N++
Sbjct: 632 MQTEWYKNIL 641
Score = 43 (20.2 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 329 YFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIR 388
Y + +++ Q I+ +E R E P +D A D ER + N E+ IV R +
Sbjct: 258 YKKVDNYIKQNIIYD-REIR---EDPTTTFEDIEALDIERERKNMLFEEY-KIVERIVAS 312
Query: 389 RTS 391
T+
Sbjct: 313 ETN 315
Score = 38 (18.4 bits), Expect = 7.5e-48, Sum P(3) = 7.5e-48
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 26 PVKKEKRSCTSRKPLGSVDNEDE 48
P+ K+++S + K SV ++DE
Sbjct: 126 PIPKKRKSKPAPKQKKSVASDDE 148
Score = 38 (18.4 bits), Expect = 1.0e-14, Sum P(3) = 1.0e-14
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSL 450
++ L +N K+ + +RT + T M L+++ +L
Sbjct: 1281 KRALRSNSGKAASNKRTTRNSMKTHSAMDTLTAVAAL 1317
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 325 (119.5 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 100/338 (29%), Positives = 171/338 (50%)
Query: 133 IQVHVVVDPVL--SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITL 190
IQ ++ P L L+P+Q +G+++M ++ I+ADEMGLGKT+Q I L
Sbjct: 1695 IQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNN-KLNG----ILADEMGLGKTIQTIAL 1749
Query: 191 MWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250
+ L+ P + +V P S + NW E +KW +V + + G K +K
Sbjct: 1750 VSYLIEVKKNNGPFL----VVVPLSTLSNWGQEFSKW-APKVKRV-LYYGDKPARKSKFE 1803
Query: 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLK 310
F+ G+ N + V +YE + L K + ++ DEGHR+KN S+ ++G
Sbjct: 1804 EFIAP-GQ--FNAV-VTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKL-SIILGTS 1858
Query: 311 --AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR-GQDSCASDAE 367
++ R+LL+GTP+QN L E ++L++F+ I ++F + + P + G+ ++ E
Sbjct: 1859 YSSRYRLLLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNEEE 1918
Query: 368 RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
+ +RL + ++ L+RR + LP K E+V+ M+ Q ++Y +LIK+ V
Sbjct: 1919 QLLIIQRLHK---VLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMY-DLIKTKGV 1974
Query: 428 RR-TMKGGE--NTKLGMTALSSITSLKKLCNHPDLVMD 462
+ GG N KL ++ L+K+CNHP L D
Sbjct: 1975 SKLASSGGADGNPKLAKGLKNTYVQLRKICNHPYLFYD 2012
Score = 275 (101.9 bits), Expect = 7.6e-48, Sum P(2) = 7.6e-48
Identities = 61/166 (36%), Positives = 95/166 (57%)
Query: 482 YAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKY 541
Y Y LI + K +LD +L +K ++++ S TQ +++ E + YK+
Sbjct: 2011 YDDEYNIDDNLIRYAGKFDLLDRLLPKLK-AAGHRVLIFSQMTQLINILEVFFAYKDYKF 2069
Query: 542 VRLDGSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
+RLDGS +R ++E FN ++E FIF+LS++AGG GLNL A+ +++FD DWNP D
Sbjct: 2070 LRLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMD 2129
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
QA R R GQK+ V R ++ S+EE ++ R KK L ++
Sbjct: 2130 LQAQDRAHRIGQKQTVRVLRLVTAHSVEESILARANFKKELDKKII 2175
Score = 38 (18.4 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 51 SKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGV 94
SK +E++ E L+ KP+++ L + Y+ K G+
Sbjct: 1690 SKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGI 1733
Score = 37 (18.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL 309
NP V ++ S A + ++ + EG +LK + Q Q ++ L
Sbjct: 1678 NPTYVSKAHSYYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSL 1725
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 314 (115.6 bits), Expect = 8.8e-48, Sum P(2) = 8.8e-48
Identities = 104/353 (29%), Positives = 180/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 76 LDGKKLENYKIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 129
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ R P+
Sbjct: 130 ICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT 188
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 189 GPPTE---RIR--LQHQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 241
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 242 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 301
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 302 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 361
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 362 DFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 414
Score = 266 (98.7 bits), Expect = 8.8e-48, Sum P(2) = 8.8e-48
Identities = 79/255 (30%), Positives = 129/255 (50%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMD----KIQTGAD--GFENAMNILPTGYAASY 486
E KL T ++ L+KLCNHP LV+ + +T A+ +N+ ++ +A
Sbjct: 386 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNS-SLHDIQHAPKL 444
Query: 487 KSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFER-LSK--LRGYKYV 542
+ K L+ L L T + + + +I++ LD+ E L K L Y+
Sbjct: 445 SALKQLL-LDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL 503
Query: 543 RLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D Q
Sbjct: 504 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 563
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELR 662
AM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +L
Sbjct: 564 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 623
Query: 663 SLFQLEENTISDTHD 677
LF L+++ ++ D
Sbjct: 624 DLFTLDKDGKAEKAD 638
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 305 (112.4 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 84/264 (31%), Positives = 136/264 (51%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNIL----PTGYAASYK-SGKLLIEL 495
M I +L+ L NH L++ KI D E ++ L P + YK LI++
Sbjct: 506 MLVFPCILTLQNLANHLTLIVPKIGEPGDKAEKSLARLRICVPDKWEQLYKLRDSPLIQM 565
Query: 496 S----AKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
K VL +L + DK+++ S+ + L + L + Y Y LDGS+ I+
Sbjct: 566 DPEFCGKWRVLKDLLKFWE-GNGDKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIE 624
Query: 552 KRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
+R ++V+ FN +F+F++S+KAGG GLN+ AN++V+FDP WNP+ D QA R +R G
Sbjct: 625 ERQQIVDDFNSDPQQFVFLISTKAGGVGLNITSANKVVIFDPHWNPSWDLQAQDRAYRIG 684
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS-----MSELRSLFQ 666
Q + V+R +S G+IEE + RQ +K+ ++ + + R+F+ S +F
Sbjct: 685 QTRDVDVFRLVSQGTIEEIVYARQIYKQQQANIGYNASNE-RRYFTGVQQDNSRKGEIFG 743
Query: 667 LEENTISDTHDKIKCSRCVNGIQV 690
LE N + D++ VN V
Sbjct: 744 LE-NIFTFRPDRVVLRDIVNKTNV 766
Score = 283 (104.7 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 87/311 (27%), Positives = 150/311 (48%)
Query: 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-R 196
++ ++ LR +Q +GV FM+E R GCI+ D+MGLGKT+Q + +
Sbjct: 185 IIPAPIAQYLRDYQVDGVSFMHEAFVYQR-----GCILGDDMGLGKTVQVAAFLTAAFGK 239
Query: 197 QGPL--------AKPL---IDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEI 245
G K L K ++V PSS+++NW E+ +W +V + G K ++
Sbjct: 240 TGDFRDSKRMRKVKRLGRRYYKVLVVCPSSVMENWRQELARWGWWKVESY--HGPGKDDV 297
Query: 246 DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
+ S GR V ++ + T+R ++ V+ DE H +K S+ +A
Sbjct: 298 LDTAKS-----GRLEV---MLTTPATYRLQKERVNTVSWDAVVVDECHNIKERRSEITKA 349
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
+ + A R+ L+GT IQN E ++L+++ N G GT E++ P+ GQ A+
Sbjct: 350 MTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEWKTSISRPLTLGQSHNATL 409
Query: 366 AERTKANERLEQLI-GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS 424
E + A + ++L+ ++ +RR +L++ LP K ++VV +TDLQ Y I S
Sbjct: 410 QELSMARKTAKKLVQNLLPDYFLRRMKSLIAHQLPKKRDRVVFCPLTDLQTTAYERFIAS 469
Query: 425 DAVRRTMKGGE 435
+ V + E
Sbjct: 470 EEVELVRRSHE 480
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 317 (116.6 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 107/355 (30%), Positives = 178/355 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ- 186
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1258 LDGRKLENYKIPVPIKAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1311
Query: 187 -CITLMWTLLR-------QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
CI LR + P + PL +I+V P +L +W +E+ K+ P+
Sbjct: 1312 ICILAGDHFLRAQEYTRTKAPDSCPL--PSIVVCPPTLTGHWVDEVGKFCSKEFLN-PLH 1368
Query: 239 -GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKN 297
G E + +Q ++ + ++V SY+ R+ + + DEGH +KN
Sbjct: 1369 YTGPPTE-----RARLQHQVKK--HNLIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKN 1421
Query: 298 CESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR 357
+++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL
Sbjct: 1422 GKTKLSKAIKQLTANYRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILA 1481
Query: 358 GQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKEL 417
+D+ +S E+ +E L V L+RR + + LP K Q ++ LQ +L
Sbjct: 1482 SRDAKSSSREQEAGVLAMEALHRQVLPFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQL 1541
Query: 418 YTNLIKSDA---------VRRTMKGGENTKLGMTA--LSSITSLKKLCNHPDLVM 461
Y + KS A T + E KL T ++ L+KLCNHP LV+
Sbjct: 1542 YEDFAKSRAKVNVDDVISTASTQEDEEKPKLKATGHVFQALQYLRKLCNHPALVL 1596
Score = 276 (102.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 81/262 (30%), Positives = 132/262 (50%)
Query: 430 TMKGGENTKLGMTA--LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYK 487
T + E KL T ++ L+KLCNHP LV+ +++ L T ++ S +
Sbjct: 1563 TQEDEEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE---YKHITEQLSTQHS-SLR 1618
Query: 488 SGKLLIELSA-KLMVLDTMLAVI--------KMTTDDKIVLVSNYTQTLDLFER-LSK-- 535
+ +LSA K ++LD L + ++++ LD+ E+ L K
Sbjct: 1619 DIQHAPKLSALKQLLLDCGLGSAGASDSGTEAVVAQHRVLIFCQLKSMLDIVEQDLLKPQ 1678
Query: 536 LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDW 595
L G Y+RLDGS+ R +V FN + + +L++ GG GLNL GA+ +V + DW
Sbjct: 1679 LPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1738
Query: 596 NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH 655
NP D QAM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E +
Sbjct: 1739 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENASLQS 1798
Query: 656 FSMSELRSLFQLEENTISDTHD 677
+L +LF L+++ ++ D
Sbjct: 1799 MGTEQLLNLFTLDKDDKAEKCD 1820
Score = 42 (19.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 246 DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
D +LNS + RP + + S S L + V +V+C+ K CE
Sbjct: 703 DPRLNS--SSLELRPAESLAQLLLFHLNSK-SALQRIAVSMVICEWAGLQKECE 753
Score = 40 (19.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 359 QDSCASDAERTKANERL 375
+D+CAS RT+ + L
Sbjct: 175 EDACASSTNRTQPGKSL 191
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 293 (108.2 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 65/162 (40%), Positives = 99/162 (61%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G+ L+E S KL +LD+MLA ++ ++L S T+ LD+ + + RGY Y RLD
Sbjct: 325 FEMGEHLVEASGKLSLLDSMLAYLQ-EGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLD 383
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F+ T + FIF+LS+KAGG G+NL A+ ++ D D+NP ND QA A
Sbjct: 384 GSVRGEERNLAIKNFS-TKDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAA 442
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ +P V R L +IEE + R K L+ V++
Sbjct: 443 RAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIE 484
Score = 293 (108.2 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 95/316 (30%), Positives = 157/316 (49%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LRP+Q +GVK++ C+ ++ GCI+ DEMGLGKT Q I+L+ +G L +
Sbjct: 35 LRPYQLDGVKWLSLCM-----KNQQGCILGDEMGLGKTCQTISLL--AYARGSLK--MNG 85
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+++ P ++++NW E+ ++ V D +AE+ L S P +L
Sbjct: 86 PFLVLCPLAVLENWRQELERFCPSLSVICYTGDKEKRAELQQNLKS-------DPRFHVL 138
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+ +YE A L + +++ DE HRLKN ES +Q L RVLL+GTPIQN+
Sbjct: 139 LTTYEMCLKDARYLKSWKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNN 198
Query: 326 LLEYFSLVHFVNQGIL--GTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
L E +SL+ F+ + ++F Y +D + A +++L ++
Sbjct: 199 LQEVYSLLTFIQPSVFLPEAVEDFVNAY------------ADIQTEPA--LVDELHQVLQ 244
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
L+RR A ++ LP KTE VV ++ LQK Y ++ D + ++TK +
Sbjct: 245 PFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDL--DAFRTDQSTKTRL-- 300
Query: 444 LSSITSLKKLCNHPDL 459
L+ + L+K +HP L
Sbjct: 301 LNVLMQLRKCVDHPYL 316
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 523 (189.2 bits), Expect = 2.8e-47, P = 2.8e-47
Identities = 171/547 (31%), Positives = 272/547 (49%)
Query: 141 PV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ--CITLMWTLLRQ 197
PV +S LR +Q+ G+ +++ + + +G I+ D+MGLGKTLQ CI + RQ
Sbjct: 1344 PVPISVELRCYQQAGINWLWF----LNKYNLHG-ILCDDMGLGKTLQTICILAGDHMHRQ 1398
Query: 198 GPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYG 257
L ++++ P +L +W E+ K+L P+ KL S + T
Sbjct: 1399 TANLANL--PSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGT-- 1454
Query: 258 RRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLL 317
N ++V SY+T R + DEGH +KN ++++ +A+ LKA R++L
Sbjct: 1455 --KCN-LVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLIL 1511
Query: 318 SGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ 377
SGTPIQN++LE +SL F+ G LGT ++F +++ PIL +D+ +S E+ +E
Sbjct: 1512 SGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEA 1571
Query: 378 LIGIVNRCLIRRTSALLSKYLPVK-TEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGEN 436
L V L+RR + K LP K T+ ++C +++ LQ LY + K G++
Sbjct: 1572 LHRQVLPFLLRRVKEDVLKDLPPKITQDLLC-ELSPLQLRLYEDFSNKHLKDCLDKLGDS 1630
Query: 437 TKLGMTA--LSSITS-------LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYK 487
+ M LS+ T L+ +CNHP LV+ + E + T A
Sbjct: 1631 SSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQS-------EELTKV--TSQLALSN 1681
Query: 488 SGKLLIELSAKL-----MVLDTMLAV-IKMTTDDKIVLVSNYTQTLDLFER--LSK-LRG 538
S IE SAKL ++LD + V + + + ++ LD+ E+ L + L
Sbjct: 1682 SSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPS 1741
Query: 539 YKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA 598
Y+RLDGS+ +R +V FN + + +L++ GG GLNL GA+ ++ + DWNP
Sbjct: 1742 VTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPM 1801
Query: 599 NDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSM 658
D QAM R R GQKK VYR ++ S+EEK+M Q K ++ VV E +
Sbjct: 1802 KDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGT 1861
Query: 659 SELRSLF 665
S++ LF
Sbjct: 1862 SQIFDLF 1868
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 294 (108.6 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 73/191 (38%), Positives = 107/191 (56%)
Query: 454 CN-HPDLVMDKIQTGADGFE--NAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIK 510
C+ +PDL+ + ++ D FE N T + YK K LI S K +L+ +L+ IK
Sbjct: 788 CDANPDLIFEDMEVMTD-FELHRLCNEFTT--LSQYKLEKELILDSGKFNILEKLLSDIK 844
Query: 511 MTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFM 570
D++VL S +T LD+ E + ++YVRLDG I +R +++ FN + FIF+
Sbjct: 845 KK-GDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHLIDEFNTDMDIFIFL 903
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
LS+KAGG G+NL AN +++ D D NP ND QA R R GQ K V + + G+IEE
Sbjct: 904 LSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEES 963
Query: 631 MMQRQAHKKAL 641
M++ K L
Sbjct: 964 MLKISQQKLRL 974
Score = 287 (106.1 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 89/315 (28%), Positives = 153/315 (48%)
Query: 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
+L+P+Q+ G+ ++ + + I+ADEMGLGKT+Q I + L G L+
Sbjct: 473 VLKPYQKIGLNWL-----ALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSGPHLV 527
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
V P+S + NW E +W L GS+ E + + N ++
Sbjct: 528 -----VVPASTMDNWIREFNQWCPSMNILLYY--GSQEERKHLRYDILNKVVE--FN-VI 577
Query: 266 VISYETFRSHA---SVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPI 322
V +Y S A S+ + ++ + DEGH LKN + YQ LM L A+ R+LL+GTP+
Sbjct: 578 VTTYNCAISSAEDRSLFRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPV 637
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
QN+LLE SL++FV + ++ K+ L + ++D + ER+ I+
Sbjct: 638 QNNLLELMSLLNFVMPHMFSSSTSEIKR-----LFSSKAKSTDEQTIFEKERIAHAKQIM 692
Query: 383 NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMT 442
++RR + + K LP K +++ +M+ Q++LY SD + + K + T+
Sbjct: 693 KPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLY-----SDLLNKLKKSIDATEKNSE 747
Query: 443 ALSSITSLKKLCNHP 457
+ + L+K+ NHP
Sbjct: 748 LCNVMMHLRKMANHP 762
Score = 61 (26.5 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 34/141 (24%), Positives = 60/141 (42%)
Query: 219 NWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASV 278
N C EI++ L +V L DG I+ S M N +L + + ++
Sbjct: 436 NKCEEISRTLTKQVTQLTEDGECGWNIEQP--SIMSE------NLVLKPYQKIGLNWLAL 487
Query: 279 LHKNEVGLVLCDEGHRLKNCESQTYQA---LMGLKAKRRVLLSGTPIQNDLLEYFSLVHF 335
LHK++V ++L DE K ++ + A + G V++ + + N + E+
Sbjct: 488 LHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSGPHLVVVPASTMDNWIREFNQWCPS 547
Query: 336 VNQGILGTAQEFRKQYETPIL 356
+N + +QE RK IL
Sbjct: 548 MNILLYYGSQEERKHLRYDIL 568
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 345 (126.5 bits), Expect = 5.5e-47, Sum P(3) = 5.5e-47
Identities = 102/334 (30%), Positives = 173/334 (51%)
Query: 141 PV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ--CITLMWTLLRQ 197
PV + LR +Q+EGV ++ + +G I+ D+MGLGKTLQ CI +R+
Sbjct: 1295 PVTIKATLRKYQQEGVNWL----AFLNKYHLHG-ILCDDMGLGKTLQTICIVSSDHHIRE 1349
Query: 198 GPLAKPLIDK-----AIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSF 252
+ + ++++ P SL+ +W EI ++ + L G I +
Sbjct: 1350 ENFKETGSAEYRKLPSLVICPPSLIGHWEQEINQY-APFMKVLVYAGSPSIRIPLR---- 1404
Query: 253 MQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAK 312
G+ P ++V SY+ R+ L K++ + DEGH +KN S+ +++ +KA+
Sbjct: 1405 ----GQIPDADVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAE 1460
Query: 313 RRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKAN 372
R++LSGTPIQN++LE +SL F+ G LGT + F +++ PI ++S S E+
Sbjct: 1461 HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGA 1520
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS--DAVRRT 430
+E L V ++RR + LP K Q +++DLQK+LY + K+ + ++
Sbjct: 1521 LAMESLHKQVLPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQKKLYKDFAKTQKETIKTD 1580
Query: 431 MKGGENTKLGMT-ALSSITSLKKLCNHPDLVMDK 463
++G E K G T ++ ++KLCNHP LVM +
Sbjct: 1581 VQGSE--KEGKTHVFQALQYMRKLCNHPALVMSE 1612
Score = 241 (89.9 bits), Expect = 5.5e-47, Sum P(3) = 5.5e-47
Identities = 54/160 (33%), Positives = 90/160 (56%)
Query: 513 TDDKIVLVSNYTQTLDLFER--LSK-LRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569
++ + ++ LD+ E L K L ++RLDGS + R +V FN+ + +
Sbjct: 1685 SEHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNEDPSIDVL 1744
Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629
+L++K GG GLNL GA+ ++ + DWNP ND QAM R R GQKK VYR ++ ++EE
Sbjct: 1745 LLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEE 1804
Query: 630 KMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
K+M Q K ++S +V+ + + ++L LF +++
Sbjct: 1805 KIMGLQKFKMNIASTIVNQQNAGLQSMDTNQLLDLFDVDD 1844
Score = 49 (22.3 bits), Expect = 5.5e-47, Sum P(3) = 5.5e-47
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 7 SQLSKRSPEDSPGI--KTFP--PPVKKEKRSCTSRKPLGSVDNED--EPNSKLPMTKEEM 60
S L+K PED+ + + +P K E R +R G V+N +PNS+ + E+
Sbjct: 28 SDLAKAHPEDTINLLGRVYPYLKSKKWETRISAARAFGGIVNNAPLWDPNSEKQIKLEKD 87
Query: 61 SEHENLIRQILAKP 74
+E + +I P
Sbjct: 88 AEQVFVKEEIETDP 101
Score = 46 (21.3 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 450 LKKLCNHPDLVMDKIQTGADGFENAM-NILP 479
L KLC+H +++ Q + EN+ N++P
Sbjct: 552 LAKLCSHKEVIEIMQQDANENKENSFENLVP 582
Score = 40 (19.1 bits), Expect = 4.8e-46, Sum P(3) = 4.8e-46
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 3 SLAPSQLSK--RSPEDSPGIKTFPPPVKKEKRSC 34
+L L+K + PE P + P +K + SC
Sbjct: 819 TLLSGSLNKVLQEPESLPHFRELVPTLKAVRTSC 852
Score = 39 (18.8 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 267 ISYETF---RSHASVLHKNEVGLVLCDEGHRL 295
I ETF + H S H+ L D HR+
Sbjct: 896 ICNETFVKLKKHLSATHRLSANQALEDAKHRI 927
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 310 (114.2 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 69/197 (35%), Positives = 111/197 (56%)
Query: 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509
L+K CNHP L+ I P +K + L+ S K ++LD ML +
Sbjct: 567 LRKCCNHPYLIEYPID-------------PV--TQEFKIDEELVTNSGKFLILDRMLPEL 611
Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569
K+ K++L S T+ LD+ R + + RLDGSM+ +R K + +FN + FIF
Sbjct: 612 KIR-GHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIF 670
Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629
++S++AGG G+NL A+ ++++D DWNP +D QA R R GQ KP VYR ++ +I++
Sbjct: 671 LVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQ 730
Query: 630 KMMQRQAHKKALSSCVV 646
K+++R A K+ L ++
Sbjct: 731 KIVERAAAKRKLEKLII 747
Score = 266 (98.7 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 75/279 (26%), Positives = 143/279 (51%)
Query: 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
++R +Q EG++++ + E+ I+ADEMGLGKT+QCI + ++++G + P +
Sbjct: 222 VMRWYQVEGMEWLR-----MLWENGINGILADEMGLGKTVQCIATIALMIQRG-VPGPFL 275
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+ P S + NW E ++ + + + GS+ E +N + G ++P++
Sbjct: 276 ----VCGPLSTLPNWMAEFQRFTP-EIPTM-LYHGSQQERRKLVNHIHKRKGTLQIHPVV 329
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+ S+E +VL ++ DEGHR+KN + + + L A ++LL+GTP+QN+
Sbjct: 330 ITSFEIAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNN 389
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILR--GQDSCASDAERTKANERLEQLIGIVN 383
L E +SL++F+ + + F ++ L +D A + E+ L L I+
Sbjct: 390 LSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNV----LHMLHQILT 445
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
L+RR + ++ +P K E VV ++ Q+ YT ++
Sbjct: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIV 484
Score = 49 (22.3 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 348 RKQYETPILRGQDSCASDAERT----KANERLEQLIGIVNRCLIRRTSALLSKYLPVKTE 403
RK+ + +G++S + E T K R ++ I + + + ++K +TE
Sbjct: 102 RKKESLKVTKGKNSIDASEENTVVMRKKRGREDESYNI-SEVMSKEEILSVAKKNKKETE 160
Query: 404 -QVVCIKMT--DLQKELYTNLIKSDAVRRTMKGGENTK 438
+ C + DLQK +N I D + +T++ +NTK
Sbjct: 161 NESSCSNLCVEDLQKNRDSNSIIKDRLSQTVR--QNTK 196
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 294 (108.6 bits), Expect = 9.7e-47, Sum P(2) = 9.7e-47
Identities = 60/151 (39%), Positives = 91/151 (60%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S KL LD +L +K +I++ T+ + +FE + YKY+RLDGS TI+ R +
Sbjct: 1235 SGKLAKLDELLIDLKRG-GHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRRE 1293
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V+ + FIFMLS++AGG GLNL A+ ++ +D DWNP D QAM R R GQ K
Sbjct: 1294 MVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQ 1353
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
V+R ++ +IE+K+++R K+ + VV
Sbjct: 1354 VKVFRLVTRNTIEQKILERAKEKEEIQKLVV 1384
Score = 288 (106.4 bits), Expect = 9.7e-47, Sum P(2) = 9.7e-47
Identities = 94/326 (28%), Positives = 159/326 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+L L+ +Q +G+ ++ E I+ADEMGLGKT+Q I+++ L +
Sbjct: 667 MLKCTLKEYQLKGLNWLANLY-----EQGINGILADEMGLGKTVQSISVLAYLAETYNMW 721
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK-LNSFMQTYGRR- 259
P + +V P+S + NW EITK++ LP G +K D K L F R
Sbjct: 722 GPFL----VVTPASTLHNWQQEITKFVP-EFKVLPYWGNAK---DRKILRKFWDRKSLRY 773
Query: 260 -PVNP--ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
+P +LV SY+ + + K + ++ DE +K+ S +++L+ L + R+L
Sbjct: 774 DKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLL 833
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
L+GTPIQN + E ++L+HF+ I + EF + I S S E ++L
Sbjct: 834 LTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKDIESHAQSNTSLDE-----QQLR 888
Query: 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRT--MKGG 434
+L I+ ++RR + L K E V +T QK+LY L ++ T ++
Sbjct: 889 RLHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELE 948
Query: 435 ENTKLGMTALSSIT-SLKKLCNHPDL 459
N+ ++L+++ +K+CNHPDL
Sbjct: 949 SNSTSSDSSLANLVMQFRKVCNHPDL 974
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 320 (117.7 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 108/355 (30%), Positives = 181/355 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQ- 186
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1241 LDGKKLENYKIPVPIKAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1294
Query: 187 -CITLMWTLLRQGPLAKP-LIDK----AIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
CI LR A+ L+D +++V P +L +W +E+ K+ P+
Sbjct: 1295 ICILAGDHCLRAQEYARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKEYLN-PLHYT 1353
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E + +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1354 GPPTE-----RARLQYQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1406
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1407 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1466
Query: 360 DSCASDAERTKANE-RLEQLIGIVNRCLIRRTSALLSKYLPVKTEQ-VVCIKMTDLQKEL 417
D+ +S E+ +E L V L+RR + + LP K Q C+ ++ LQ +L
Sbjct: 1467 DARSSSREQEAVGVLAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCV-LSPLQVQL 1525
Query: 418 YTNLIKSDA---VRRTMKG------GENTKLGMTA--LSSITSLKKLCNHPDLVM 461
Y + KS A + T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1526 YEDFAKSRAKCDIDETVSSISLREETEKPKLKATGHVFQALQYLRKLCNHPALVL 1580
Score = 263 (97.6 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 77/249 (30%), Positives = 122/249 (48%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLL 492
E KL T ++ L+KLCNHP LV+ T ++ L + +S + +
Sbjct: 1552 EKPKLKATGHVFQALQYLRKLCNHPALVLT---TQHPEYKRITEQL-AAHNSSLRDIQHA 1607
Query: 493 IELSA-KLMVLDTMLA--------VIKMTTDDKIVLVSNYTQTLDLFER---LSKLRGYK 540
+LSA K ++LD L + +I++ LD+ E +L
Sbjct: 1608 PKLSALKQLLLDCGLGNGGSSESGTEAVVAQHRILIFCQLKSMLDIVEHDLLRPQLPSVT 1667
Query: 541 YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
Y+RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D
Sbjct: 1668 YLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD 1727
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE 660
QAM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +
Sbjct: 1728 LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENASLQSMGTEQ 1787
Query: 661 LRSLFQLEE 669
L LF L++
Sbjct: 1788 LLDLFTLDK 1796
Score = 43 (20.2 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 30/147 (20%), Positives = 57/147 (38%)
Query: 195 LRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEI-DNKLNSFM 253
LRQG + + I S+ ++ + R+ A + G I D +N+
Sbjct: 635 LRQGQTQNKEVIQEYIAGADSIAEDPATRDYVVMRARMMAAKLLGALCCCICDPGVNTVT 694
Query: 254 QTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY---QALMGLK 310
Q +P + + S S L + V LV+C+ K C + L+G+
Sbjct: 695 QEI--KPAESLAQLLLFHLNSK-SALQRISVALVICEWAALQKECRTVAICVQPCLLGVL 751
Query: 311 AKR----RVLLSGTPIQNDLLEYFSLV 333
++ + + T +QN+ + SL+
Sbjct: 752 SEHLYYDEIAVPFTRMQNECKQLISLL 778
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 510 (184.6 bits), Expect = 1.5e-46, P = 1.5e-46
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 59 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 111
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 112 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 171
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 172 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 228
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 229 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 285
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 286 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 336
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 337 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 395
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 396 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 455
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 456 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 513
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 514 EVPDDETVN 522
Score = 308 (113.5 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 1 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 55
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 56 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 105
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 106 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 164
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 165 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 222
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 223 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 281
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 282 GGTK---TLMNTIMQLRKICNHP 301
Score = 37 (18.1 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 582 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 624
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 302 (111.4 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 63/162 (38%), Positives = 99/162 (61%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y +G+ LI+ S K+ +LD +L +K ++++ S ++ LD+ E RGYKY R+D
Sbjct: 570 YTTGEHLIDNSGKMALLDKLLKKLK-ERGSRVLIFSQMSRMLDILEDYMLYRGYKYARID 628
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
GS R +E +NK ++ F F+L+++AGG G+ L A+ +++FD DWNP D QA
Sbjct: 629 GSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQ 688
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ KP VYRF++ S+EEKM+++ K L + V+
Sbjct: 689 DRAHRIGQTKPVTVYRFVTENSMEEKMVEKAEMKLQLDALVI 730
Score = 287 (106.1 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 93/321 (28%), Positives = 156/321 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+ S +R +Q G+ ++ + E I+ADEMGLGKTLQ I+L+ L +
Sbjct: 271 IKSGTMRDYQVYGLNWLIQLY-----ERGINGILADEMGLGKTLQTISLLGYLSEYKGIR 325
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P +I+AP S + W E T+W + + G + D K N + + + V
Sbjct: 326 GP----HLIIAPKSTLSGWAKEFTRWCPF-LRVVRFHGSKEEREDIKKNQLI--FKKFDV 378
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTP 321
+ +YE S K ++ DE HR+KN S + + ++ R+L++GTP
Sbjct: 379 ---CITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTP 435
Query: 322 IQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
+QN+L E +SL++F+ + ++ +F K ++ A++ E + E +++L +
Sbjct: 436 LQNNLHELWSLLNFLLPDVFSSSDDFDKWFDL---------ANNTENQQ--EVIDKLHKV 484
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD--AVRRTMKGGENTKL 439
+ L+RR + K LP K E + + ++ +QKE Y L+ D AV KG NT
Sbjct: 485 LRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDLDAVVVGAKG--NT-- 540
Query: 440 GMTALSSIT-SLKKLCNHPDL 459
G L +I L+K CNHP L
Sbjct: 541 GRVRLLNICMQLRKACNHPYL 561
Score = 37 (18.1 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 42 SVDNEDEPNSKLPMTKEEMSEHE 64
S++N++E M +EE+ ++E
Sbjct: 62 SMENDNENEEDEVMEEEEVDDNE 84
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 312 (114.9 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 93/345 (26%), Positives = 170/345 (49%)
Query: 124 DLLKIDKDKIQVHVV-VDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLG 182
D+L + D + H+ + P++ LR +Q G+ ++ + G I+ADEMGLG
Sbjct: 640 DILTCNMD--EKHLTKIPPIIKATLRDYQHAGLHWLLYLYKN----NING-ILADEMGLG 692
Query: 183 KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
KTLQCI+L+ L + P +++ P+S++ NW E+ ++ L G
Sbjct: 693 KTLQCISLLSYLAYYFNIWGP----HLVIVPTSILINWEIELKRFCPC-FKILSYYGNQN 747
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
++ F + I + SY T V + ++ DE H +KN ++
Sbjct: 748 ERYKKRVGWF-----NKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKR 802
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
+ ++ LK +L++GTP+QN L E +SL+HF+ I + +F++ + P+ +
Sbjct: 803 WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEK- 861
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
S +K E +++L ++ ++RR + K +P K E ++ K+T Q+ LY I
Sbjct: 862 -SKIHHSK--ELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI 918
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK-IQT 466
+ V+ T+ G +G+ ++ + L+K+CNH DL +K IQT
Sbjct: 919 NNKNVQNTLNTGNY--IGL--MNILIQLRKVCNHCDLFTNKYIQT 959
Score = 271 (100.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 55/151 (36%), Positives = 90/151 (59%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S KL L+ +L+ K +K +L + + + LD+ E Y ++RLDGS +++R K
Sbjct: 1767 SGKLCALEKLLSKCKRE-GNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQK 1825
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V FN + FIF+ S+++G G+NL AN ++ +D DWNP+ D QAM R R GQ K
Sbjct: 1826 IVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKD 1885
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSS-CV 645
V+RF+ ++EE + ++Q K+ L + C+
Sbjct: 1886 VHVFRFVCEYTVEENIWKKQLQKRKLDNICI 1916
Score = 37 (18.1 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 29 KEKRSCTSRKPLGSVDNE 46
KE+ + T+++ LG ++N+
Sbjct: 1426 KEEGTLTNQQSLGDINNK 1443
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 312 (114.9 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 93/345 (26%), Positives = 170/345 (49%)
Query: 124 DLLKIDKDKIQVHVV-VDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLG 182
D+L + D + H+ + P++ LR +Q G+ ++ + G I+ADEMGLG
Sbjct: 640 DILTCNMD--EKHLTKIPPIIKATLRDYQHAGLHWLLYLYKN----NING-ILADEMGLG 692
Query: 183 KTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK 242
KTLQCI+L+ L + P +++ P+S++ NW E+ ++ L G
Sbjct: 693 KTLQCISLLSYLAYYFNIWGP----HLVIVPTSILINWEIELKRFCPC-FKILSYYGNQN 747
Query: 243 AEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQT 302
++ F + I + SY T V + ++ DE H +KN ++
Sbjct: 748 ERYKKRVGWF-----NKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKR 802
Query: 303 YQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
+ ++ LK +L++GTP+QN L E +SL+HF+ I + +F++ + P+ +
Sbjct: 803 WNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEK- 861
Query: 363 ASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
S +K E +++L ++ ++RR + K +P K E ++ K+T Q+ LY I
Sbjct: 862 -SKIHHSK--ELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI 918
Query: 423 KSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK-IQT 466
+ V+ T+ G +G+ ++ + L+K+CNH DL +K IQT
Sbjct: 919 NNKNVQNTLNTGNY--IGL--MNILIQLRKVCNHCDLFTNKYIQT 959
Score = 271 (100.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
Identities = 55/151 (36%), Positives = 90/151 (59%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
S KL L+ +L+ K +K +L + + + LD+ E Y ++RLDGS +++R K
Sbjct: 1767 SGKLCALEKLLSKCKRE-GNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQK 1825
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V FN + FIF+ S+++G G+NL AN ++ +D DWNP+ D QAM R R GQ K
Sbjct: 1826 IVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKD 1885
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSS-CV 645
V+RF+ ++EE + ++Q K+ L + C+
Sbjct: 1886 VHVFRFVCEYTVEENIWKKQLQKRKLDNICI 1916
Score = 37 (18.1 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 6/18 (33%), Positives = 14/18 (77%)
Query: 29 KEKRSCTSRKPLGSVDNE 46
KE+ + T+++ LG ++N+
Sbjct: 1426 KEEGTLTNQQSLGDINNK 1443
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 314 (115.6 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 104/353 (29%), Positives = 180/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1247 LDGKKLENYKIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1300
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ R P+
Sbjct: 1301 ICILAGDHCQRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT 1359
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1360 GPPTE---RIR--LQHQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1412
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1413 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1472
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 1473 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 1532
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1533 DFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1585
Score = 266 (98.7 bits), Expect = 2.7e-46, Sum P(2) = 2.7e-46
Identities = 81/257 (31%), Positives = 125/257 (48%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLL 492
E KL T ++ L+KLCNHP LV+ F+N L +S +
Sbjct: 1557 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE---FKNTTEKLAV-QNSSLHDIQHA 1612
Query: 493 IELSA-KLMVLDTMLA--------VIKMTTDDKIVLVSNYTQTLDLFER-LSK--LRGYK 540
+LSA K ++LD L + +I++ LD+ E L K L
Sbjct: 1613 PKLSALKQLLLDCGLGNGTSSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1672
Query: 541 YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
Y+RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D
Sbjct: 1673 YLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD 1732
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE 660
QAM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +
Sbjct: 1733 LQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQ 1792
Query: 661 LRSLFQLEENTISDTHD 677
L LF L+++ ++ D
Sbjct: 1793 LLDLFTLDKDGKAEKAD 1809
Score = 38 (18.4 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQT 302
S L + LV+C+ K C++ T
Sbjct: 721 SALQRISAALVICEWAALQKECKAVT 746
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 314 (115.6 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 104/353 (29%), Positives = 180/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1248 LDGKKLENYKIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1301
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ R P+
Sbjct: 1302 ICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT 1360
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1361 GPPTE---RIR--LQHQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1413
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1414 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1473
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 1474 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 1533
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1534 DFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1586
Score = 266 (98.7 bits), Expect = 2.8e-46, Sum P(2) = 2.8e-46
Identities = 79/255 (30%), Positives = 129/255 (50%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMD----KIQTGAD--GFENAMNILPTGYAASY 486
E KL T ++ L+KLCNHP LV+ + +T A+ +N+ ++ +A
Sbjct: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNS-SLHDIQHAPKL 1616
Query: 487 KSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFER-LSK--LRGYKYV 542
+ K L+ L L T + + + +I++ LD+ E L K L Y+
Sbjct: 1617 SALKQLL-LDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL 1675
Query: 543 RLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D Q
Sbjct: 1676 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1735
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELR 662
AM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +L
Sbjct: 1736 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 1795
Query: 663 SLFQLEENTISDTHD 677
LF L+++ ++ D
Sbjct: 1796 DLFTLDKDGKAEKAD 1810
Score = 42 (19.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQT 302
S L + V LV+C+ K C++ T
Sbjct: 722 SALQRISVALVICEWAALQKECKAVT 747
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 350 (128.3 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 87/264 (32%), Positives = 143/264 (54%)
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
++RR + K LP K+E+++ ++++DLQ Y N++ + T +++ + L+
Sbjct: 589 ILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISL--LN 646
Query: 446 SITSLKKLCNHPDLVMDKIQTGADGFENA--MNILPTGYAASYKSGKLLIELSAKLMVLD 503
+ LKK NHP L DG E + I G G LI S K+++LD
Sbjct: 647 IVVELKKASNHPYLF--------DGVEESWMQKINSQGRRDEVLKG--LIMNSGKMVLLD 696
Query: 504 TMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK- 562
+L+ ++ ++++ S + LD+ LRGY + RLDG++ R ++ FN
Sbjct: 697 KLLSRLRRD-GHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAP 755
Query: 563 TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFL 622
S +F+F+LS++AGG G+NL+ A+ +++FD DWNP D QAMAR R GQK VYR L
Sbjct: 756 NSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLL 815
Query: 623 STGSIEEKMMQRQAHKKALSSCVV 646
S +IEE +++R K L ++
Sbjct: 816 SKDTIEEDVLERARRKMILEYAII 839
Score = 234 (87.4 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 75/253 (29%), Positives = 119/253 (47%)
Query: 174 IMADEMGLGKTLQCITLMWTL---LRQ-GPLAKPLIDKAIIVAPSSLVKNWCNEITKWLG 229
I+ADEMGLGKT+Q + + L LRQ GP ++V P S V W + W
Sbjct: 397 ILADEMGLGKTVQTVAFLSYLAHSLRQHGPF--------LVVVPLSTVPAWQETLALWAS 448
Query: 230 GRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLC 289
+ + ++ ++ + N +L+ +YE SVL + +
Sbjct: 449 DMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFN-LLLTTYEYVLKDRSVLSNIKWQYMAI 507
Query: 290 DEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRK 349
DE HRLKN ES Y+AL K R+L++GTP+QN++ E +LV F+ G E R+
Sbjct: 508 DEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKF----EIRE 563
Query: 350 QYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIK 409
+ L D +A E L+ I +RR + K LP K+E+++ ++
Sbjct: 564 EIN---LEAPDE-EQEAYIRSLQEHLQPYI-------LRRLKKDVEKSLPSKSERILRVE 612
Query: 410 MTDLQKELYTNLI 422
++DLQ Y N++
Sbjct: 613 LSDLQMYWYKNIL 625
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(3) = 3.0e-46
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 42 SVDNEDEPNSKLPMTKEEMSE 62
+++ D ++ P K+EMSE
Sbjct: 15 AIEQLDHVQTETPNLKQEMSE 35
Score = 37 (18.1 bits), Expect = 8.6e-26, Sum P(3) = 8.6e-26
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 348 RKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLS-KYLPVKTEQVV 406
R+ E P +D A D E+ + E E+ V+R + + ++ S +YL VK +Q++
Sbjct: 257 REIREDPTTTREDIEAMDIEKERKRENYEEYKQ-VDRIVAKHLNSDGSVEYL-VKWKQLL 314
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 297 (109.6 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 112/393 (28%), Positives = 181/393 (46%)
Query: 120 LSAHDLLKIDKDKIQVHVVVDPVLSNI-LRPHQREGVKFMYECVTGVRIEDAYGCIMADE 178
L A D + + ++Q + + L+ I LR +Q EGV ++ +C G GCI+ DE
Sbjct: 12 LRAGDRPEPVRTRVQEQDLQEWGLTGIRLRSYQLEGVNWLVQCFHGQN-----GCILGDE 66
Query: 179 MGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID 238
MGLGKT Q I L+ L+ + P + I+ P S++ NW E+ ++ G ++ +
Sbjct: 67 MGLGKTCQTIALLIYLVGRLNDEGPFL----ILCPLSVLSNWKEEMERFAPG-LSCVTYT 121
Query: 239 GGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNC 298
G K E + Q G +L+ +YE AS L ++ DE HRLKN
Sbjct: 122 G-DKEERARRQQDLRQESGFH----VLLTTYEICLKDASFLKSFSWSVLAVDEAHRLKNQ 176
Query: 299 ESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRG 358
S ++ L R+LL+GTPIQN L E +SL+ V + R+Q E +
Sbjct: 177 SSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEPDLF-----CREQVEDFV--- 228
Query: 359 QDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
C D E K ++ +L ++ L+RR A ++ LP KTE V+ M+ LQK+ Y
Sbjct: 229 --QCYQDIE--KESKSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYY 284
Query: 419 TNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV----MDKIQTGADGFENA 474
++ D + + KL + +T L+K +HP L + + G E +
Sbjct: 285 KAILMKDLDAFENETAKKVKLQ----NVLTQLRKCVDHPYLFDGVEPEPFEVGEHLIEAS 340
Query: 475 --MNILPTGYAASYKSGKLLIELSAKLMVLDTM 505
+++L A Y G ++ S +LD +
Sbjct: 341 GKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDIL 373
Score = 273 (101.2 bits), Expect = 4.5e-46, Sum P(2) = 4.5e-46
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G+ LIE S KL +LD +LA + + +++L S T LD+ + RGY Y R+D
Sbjct: 330 FEVGEHLIEASGKLHLLDRLLAFL-YSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVD 388
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F K F+F+LS++AGG G+NL A+ ++ D D+NP ND QA A
Sbjct: 389 GSVRGEERHLAIKNFGKQPI-FVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAA 447
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ K V R + ++EE + ++ A K L++ V++
Sbjct: 448 RAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIE 489
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 366 (133.9 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 90/282 (31%), Positives = 161/282 (57%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K + VV K+ D Q ELY ++SD V+ + T+ + L+++T LKK+C+HP L+
Sbjct: 719 KNDFVVWTKLADSQIELYRTFLESDEVKDALN---KTQ---SPLAALTVLKKICDHPHLL 772
Query: 461 MDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
++++ + + M L + S +S L+ S K +L +L + ++++
Sbjct: 773 REEMKMIS---LDEMKDLLSKVGGSSRSINSLVNNSGKFQLLLKLLPNLHQD-GHRVLMF 828
Query: 521 SNYTQTLDLFERLSKLRGYKYVRLDGSMT-IKKRAKVVETFNKTSNEFIFMLSSKAGGCG 579
S + L+ FE L G Y+R+DGS++ KKR ++++ +N + F F+++ + G G
Sbjct: 829 SQSVKMLEDFEILLDHLGLTYLRIDGSISSTKKRQEIIDLYNTDMSYFAFIMTIQVGALG 888
Query: 580 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639
LNL A+R+++ DP WN D+QA+ R +R GQKK VYR +S G+IEEK+ ++Q K
Sbjct: 889 LNLTSADRVLILDPSWNTI-DNQAVDRAYRIGQKKDVVVYRLMSCGTIEEKIYRKQVFKG 947
Query: 640 ALSSCVVD-CEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
+L +++ R+FS ++LR +F L++ IS T +++
Sbjct: 948 SLMKTMLNNTMSGQHRYFSSNDLREMFTLDDTNISVTQQQLE 989
Score = 213 (80.0 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 63/246 (25%), Positives = 119/246 (48%)
Query: 150 HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAI 209
+QR+GV +++ A G I+ D+MGLGKT+Q + + ++ QG ++ L+
Sbjct: 396 YQRDGVNWLWNLFC----RHAGG-ILGDDMGLGKTMQICSFLNSMHSQGHISHTLL---- 446
Query: 210 IVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISY 269
V P L+++W E ++ + G + E + L M G I++ +Y
Sbjct: 447 -VMPVGLIEHWLKEFNRF-NPKYLVRVFHGNNTIERNKSLKRVMNEGG------IIITTY 498
Query: 270 ETFRSHA-SVLHKNEVGL----VLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
S+ S++ V+ DEGH++K ++Q + + AK +++L+GT IQN
Sbjct: 499 GMVVSNVDSMIENGRKSFIWDYVILDEGHKIKETKTQISKTMHRFNAKHKIILTGTAIQN 558
Query: 325 DLLEYFSLVHFV-NQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
+L E ++L +V +LG+ + F + PI++ S +S ++ + E L I+
Sbjct: 559 NLRELWALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDSSQDQKITGSAIAEDLRNIIA 618
Query: 384 RCLIRR 389
+RR
Sbjct: 619 PHFLRR 624
Score = 39 (18.8 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 31 KRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYT 83
K+S T K +K TK++ ++ E + KP K P+ T
Sbjct: 193 KKSTTKEKTSKPTTTTTTTTTKTT-TKDDTTDTEEEYSEEDIKPIKKPVSKVT 244
Score = 37 (18.1 bits), Expect = 7.4e-46, Sum P(3) = 7.4e-46
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 26 PVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAK 73
P+KK T ++ S +E+E + K+E + E+ I K
Sbjct: 235 PIKKPVSKVTKKQIQESEGSEEEISDSEEDIKQEEEKSESSEEDIKPK 282
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 302 (111.4 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 75/208 (36%), Positives = 116/208 (55%)
Query: 446 SITSLKKLCNH-PDLVMDKIQTGADGF-ENA---MNILP-TGYAASYKSGK-LLIELSAK 498
S+ + + L N P+L D + + F E A ++I P G++ GK LI S K
Sbjct: 1040 SLAAKQCLLNGAPELATDWLNRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGK 1099
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVE 558
L LD +L +K + ++++ S T+ +DL E R + Y+RLDGS I +R +V
Sbjct: 1100 LYALDILLTRLK-SQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVA 1158
Query: 559 TFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618
F ++ F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R GQ K V
Sbjct: 1159 DFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTV 1218
Query: 619 YRFLSTGSIEEKMMQRQAHKKALSSCVV 646
YR + G+IEE+++QR K + V+
Sbjct: 1219 YRLICKGTIEERILQRAKEKSEIQRMVI 1246
Score = 274 (101.5 bits), Expect = 5.2e-46, Sum P(2) = 5.2e-46
Identities = 86/328 (26%), Positives = 159/328 (48%)
Query: 138 VVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+ P + N L+ +Q +G+ ++ E I+ADEMGLGKT+Q I L+ L
Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLY-----EQGINGILADEMGLGKTVQSIALLAHLAE 564
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTY 256
+ + P + I++P+S + NW E T+++ + LP G D K + T
Sbjct: 565 RENIWGPFL----IISPASTLNNWHQEFTRFVP-KFKVLPYWGNPH---DRKKKKTLYTQ 616
Query: 257 GRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
P + +++ SY+ + + ++ DE LK+ S ++ L+ + + R+L
Sbjct: 617 DA-PFH-VVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLL 674
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
L+GTPIQN + E ++L+HF+ + + +EF + + I +S A + N+ L
Sbjct: 675 LTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHAENKSAIDENQ-LS 729
Query: 377 QLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGE- 435
+L I+ ++RR + L K E ++ ++T QK LY L ++ ++
Sbjct: 730 RLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMG 789
Query: 436 NTKLGMTALSSITSL----KKLCNHPDL 459
+T+ SS+ +L +K+CNHP+L
Sbjct: 790 STQQAQNTTSSLMNLVMQFRKVCNHPEL 817
Score = 38 (18.4 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 684 CVNGIQVKPPPLESDCTD 701
CV +V PL+S C D
Sbjct: 1008 CVASPRVTAVPLDSYCND 1025
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 294 (108.6 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 99/374 (26%), Positives = 178/374 (47%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+ S +R +Q G+ +M E+ I+ADEMGLGKTLQ I+L+ L A
Sbjct: 123 IKSGEMRDYQIRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLLGYLKHFKNQA 177
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P I++ P S ++NW NE KW A I G + D + N+F++
Sbjct: 178 GP----HIVIVPKSTLQNWVNEFKKWCPSLRAVCLI--GDQ---DTR-NTFIRDVLMPGE 227
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTP 321
+ V SYE SV K ++ DE HR+KN +S+ + L K R+L++GTP
Sbjct: 228 WDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTP 287
Query: 322 IQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGI 381
+QN+L E ++L++F+ + ++++F + + T ++C D + + +L +
Sbjct: 288 LQNNLHELWALLNFLLPDVFNSSEDFDEWFNT------NTCLGD------DALITRLHAV 335
Query: 382 VNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM 441
+ L+RR A + K L K E + + ++ +Q++ YT ++ D + G+ K+ +
Sbjct: 336 LKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKD-IDVVNGAGKVEKMRL 394
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY-KSGKLLIELSAKLM 500
+ + L+K NHP L D + G + + +G A K L E ++++
Sbjct: 395 QNI--LMQLRKCTNHPYL-FDGAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVL 451
Query: 501 VLDTMLAVIKMTTD 514
+ M ++ + D
Sbjct: 452 IFSQMTRMLDILED 465
Score = 277 (102.6 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 59/162 (36%), Positives = 95/162 (58%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y + L+ S K+ +LD +L ++ ++++ S T+ LD+ E R Y Y RLD
Sbjct: 420 YTTDTHLVYNSGKMAILDKLLPKLQ-EQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLD 478
Query: 546 GSMTIKKRAKVVETFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G + R + ++ FN S +F+FMLS++AGG G+NL A+ ++++D DWNP D QAM
Sbjct: 479 GQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAM 538
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+R ++ ++EEK+++R K L V+
Sbjct: 539 DRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVI 580
Score = 38 (18.4 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 233 AALPIDGGSKAEIDNKLNS 251
AA G +AE DNK+ +
Sbjct: 23 AATSSSGEKEAEFDNKIEA 41
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 294 (108.6 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 93/315 (29%), Positives = 160/315 (50%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LRP+Q +GV ++ +C +++ +GCI+ DEMGLGKT Q I+L+ L ++ L +
Sbjct: 46 LRPYQLDGVNWLVQCY---QVQ--HGCILGDEMGLGKTCQTISLLLYLTKK--LTNK--E 96
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+++I+ P S++ NW E+ ++ G ++ + G + + N Q++ R +L+
Sbjct: 97 RSLILCPLSVLSNWKEELERFAPG-LSFVTYVGNKEERYKLQQNLKEQSHFR-----VLL 150
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE A+ L + ++ DE HRLKN S Y+ L L +LL+GTPIQN L
Sbjct: 151 TTYEICLKDAAFLKFFDWAALVVDEAHRLKNQNSLLYETLTELPVGFSLLLTGTPIQNSL 210
Query: 327 LEYFSLVHFVNQGILGTAQ--EFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNR 384
E +SL+ F+ I Q EF + Y+ E K +E ++L ++
Sbjct: 211 QELYSLLSFIEPDIFPRKQVKEFVEYYQA------------VE--KESEPAKELHNLLQP 256
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTAL 444
L+RR + ++ LP K E V+ M+ LQ++ Y ++ D +GG K+ + +
Sbjct: 257 FLLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILTKDL--DAFEGGTGRKVMLQNV 314
Query: 445 SSITSLKKLCNHPDL 459
+ L+K HP L
Sbjct: 315 --LIQLRKCVAHPYL 327
Score = 275 (101.9 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 58/162 (35%), Positives = 98/162 (60%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G ++E S KL +LD +L+ + +++L S T+ LD+ + RGY Y RLD
Sbjct: 336 FEIGDHIVEASGKLCLLDKLLSFL-YDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLD 394
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F + F+F+LS++AGG G+NL A+ ++ D D+NP ND QA+A
Sbjct: 395 GSVRGEERHLAIKNFGQQPI-FVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIA 453
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ KP + R + ++EE + +R A K L++ +V+
Sbjct: 454 RAHRIGQHKPVKIIRLIGRDTVEEIIYRRAASKLRLTNAIVE 495
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 313 (115.2 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
Identities = 104/353 (29%), Positives = 180/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1244 LDGKKLENYKIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1297
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ R P+
Sbjct: 1298 ICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT 1356
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1357 GPPTE---RIR--LQHQVKR--HNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1409
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1410 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1469
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 1470 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 1529
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1530 DFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1582
Score = 263 (97.6 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
Identities = 81/257 (31%), Positives = 124/257 (48%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLL 492
E KL T ++ L+KLCNHP LV+ F+N L +S +
Sbjct: 1554 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPE---FKNTTEKL-AAQNSSLHDIQHA 1609
Query: 493 IELSA-KLMVLDTMLA--------VIKMTTDDKIVLVSNYTQTLDLFER-LSK--LRGYK 540
+LSA K ++LD L + +I++ LD+ E L K L
Sbjct: 1610 PKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVT 1669
Query: 541 YVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
Y+RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D
Sbjct: 1670 YLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRD 1729
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSE 660
QAM R R GQ K VYR ++ G++EEK+M Q K +++ V+ E + +
Sbjct: 1730 LQAMDRAHRIGQVKVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQ 1789
Query: 661 LRSLFQLEENTISDTHD 677
L LF L+++ ++ D
Sbjct: 1790 LLDLFTLDKDGKAEKAD 1806
Score = 41 (19.5 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQT 302
S L + V LV+C+ K C + T
Sbjct: 717 SALQRISVALVICEWAALQKECRAVT 742
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 506 (183.2 bits), Expect = 7.8e-46, P = 7.8e-46
Identities = 146/497 (29%), Positives = 240/497 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 140 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 192
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 193 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 252
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 253 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 309
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 310 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 366
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 367 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 417
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 418 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 476
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 477 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 536
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE S H
Sbjct: 537 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDES-RHC 595
Query: 678 KIKCSRCVNGIQVKPPP 694
S + PPP
Sbjct: 596 STG-SGSASFAHTAPPP 611
Score = 308 (113.5 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 82 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 136
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 137 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 186
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 187 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 245
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 246 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 303
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 304 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 362
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 363 GGTK---TLMNTIMQLRKICNHP 382
Score = 37 (18.1 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 696 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 738
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 313 (115.2 bits), Expect = 9.3e-46, Sum P(2) = 9.3e-46
Identities = 104/353 (29%), Positives = 180/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1249 LDGKKLENYEIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1302
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ R P+
Sbjct: 1303 ICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCS-REYLNPLHYT 1361
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1362 GPPTE---RVR--LQHQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1414
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1415 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1474
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 1475 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 1534
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1535 DFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1587
Score = 262 (97.3 bits), Expect = 9.3e-46, Sum P(2) = 9.3e-46
Identities = 79/255 (30%), Positives = 126/255 (49%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMD------KIQTGADGFENAMNILPTGYAASY 486
E KL T ++ L+KLCNHP LV+ K T +N+ ++ +A
Sbjct: 1559 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNS-SLHDIQHAPKL 1617
Query: 487 KSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFER-LSK--LRGYKYV 542
+ K L+ L L T + + + +I++ LD+ E L K L Y+
Sbjct: 1618 SALKQLL-LDCGLGNGSTSESGTESIVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL 1676
Query: 543 RLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D Q
Sbjct: 1677 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1736
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELR 662
AM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +L
Sbjct: 1737 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 1796
Query: 663 SLFQLEENTISDTHD 677
LF L+++ ++ D
Sbjct: 1797 DLFTLDKDGKAEKAD 1811
Score = 41 (19.5 bits), Expect = 4.6e-17, Sum P(2) = 4.6e-17
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQT 302
S L + V LV+C+ K C + T
Sbjct: 722 SALQRISVALVICEWAALQKECRAVT 747
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 294 (108.6 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 109/370 (29%), Positives = 169/370 (45%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LRP+Q EGV ++ +C ++ GCI+ DEMGLGKT Q I + L A L D
Sbjct: 48 LRPYQLEGVNWLAQCF---HYQN--GCILGDEMGLGKTCQTIAVFIYL------AGRLND 96
Query: 207 KA--IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPI 264
+ +I+ P S++ NW E+ + G G K E + Q G +
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERCAPGLCCVTY--AGDKEERAHLQQDLKQESGFH----V 150
Query: 265 LVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
L+ +YE AS L +++ DE HRLKN S +++L R+LL+GTPIQN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQN 210
Query: 325 DLLEYFSLVHFVNQGILGT--AQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIV 382
L E +SL+ FV + ++F ++YE D E K +E +L ++
Sbjct: 211 SLQELYSLLSFVEPDLFSKEEVEDFVQRYE------------DIE--KESESASELYKLL 256
Query: 383 NRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMT 442
L+RR A ++ LP KTE V+ M+ LQK+ Y ++ D EN
Sbjct: 257 QPFLLRRVKAEVAAELPKKTEVVIYHGMSALQKKYYKAILMKDL--EISDAFENEMAKKV 314
Query: 443 ALSSITS-LKKLCNHPDLV----MDKIQTGADGFENA--MNILPTGYAASYKSGKLLIEL 495
L ++ S L+K +HP L + + G E + +++L A Y G ++
Sbjct: 315 KLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLF 374
Query: 496 SAKLMVLDTM 505
S +LD +
Sbjct: 375 SQMTQMLDIL 384
Score = 273 (101.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G LIE S KL +LD +LA + + +++L S TQ LD+ + RGY Y R+D
Sbjct: 341 FEIGDHLIEASGKLHLLDKLLAFL-YSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVD 399
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F + FIF+LS++AGG G+NL A+ ++ D D+NP ND QA A
Sbjct: 400 GSVRGEERHLAIKNFGQQPI-FIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAA 458
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ K V R + ++EE + ++ A K L++ +++
Sbjct: 459 RAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIE 500
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 295 (108.9 bits), Expect = 9.9e-46, Sum P(2) = 9.9e-46
Identities = 115/408 (28%), Positives = 183/408 (44%)
Query: 142 VLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200
+L N IL+P+Q EG+ ++ +T E+ I+ADEMGLGKT+Q I L+ + +
Sbjct: 216 LLKNCILKPYQLEGLNWL---IT--LYENGLNGILADEMGLGKTVQSIALL-AFIYEMDT 269
Query: 201 AKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGR 258
P + + AP S + NW NE K+ + L G G K E KL +F + +G
Sbjct: 270 KGPFL----VTAPLSTLDNWMNEFAKFAPD-LPVLKYYGTNGYK-ERSAKLKNFFKQHGG 323
Query: 259 RPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLS 318
I++ SYE ++ ++ DEGHRLKN + + L + R+LL+
Sbjct: 324 ---TGIVITSYEIILRDTDLIMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLT 380
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQ- 377
GTP+QN+L E +SL++F+ I + F K ++ L S+A N+ L++
Sbjct: 381 GTPLQNNLAELWSLLNFIMPDIFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKN 440
Query: 378 LIG----IVNRCLIRRTS-ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMK 432
LI I+ L+RR +L+ LP K E ++ MT Q++ Y + +++TM
Sbjct: 441 LISNLHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGK-LKKTMF 499
Query: 433 GGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTG-ADGFENAMNILPTGYAASYKSGKL 491
E K T + D + K+ +N +N YK L
Sbjct: 500 K-ELIKDFFTLNDEYIGHVSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKN-L 557
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDL-FERLSKLRG 538
+E+S K L M+ ++ D + Y DL E L K G
Sbjct: 558 QMEISNKK--LQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSG 603
Score = 271 (100.5 bits), Expect = 9.9e-46, Sum P(2) = 9.9e-46
Identities = 57/156 (36%), Positives = 92/156 (58%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
L++ S KL +L ++ + ++ K+++ S + LDL E L + R+DGS+ +
Sbjct: 598 LLKTSGKLQILQKLIPPL-ISEGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNE 656
Query: 552 KRAKVVETFNKTSNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R +E FN + ++ IF+LS++A G G+NL+GA+ +V+FD DWNP D QAM R R
Sbjct: 657 TRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRI 716
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQ+ P VYR +IE ++ R A+K+ L V+
Sbjct: 717 GQESPVIVYRLCCDNTIEHVILTRAANKRNLERMVI 752
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 303 (111.7 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 75/208 (36%), Positives = 116/208 (55%)
Query: 446 SITSLKKLCNH-PDLVMDKIQTGADGF-ENA---MNILP-TGYAASYKSGK-LLIELSAK 498
S+ + + L N P+L D + + F E A ++I P G++ GK LI S K
Sbjct: 1046 SLAAKQCLLNGAPELATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGK 1105
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVE 558
L LD +L +K + ++++ S T+ +DL E R + Y+RLDGS I +R +V
Sbjct: 1106 LYALDVLLTRLK-SQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVA 1164
Query: 559 TFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618
F ++ F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R GQ K V
Sbjct: 1165 DFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTV 1224
Query: 619 YRFLSTGSIEEKMMQRQAHKKALSSCVV 646
YR + G+IEE+++QR K + V+
Sbjct: 1225 YRLICKGTIEERILQRAKEKSEIQRMVI 1252
Score = 270 (100.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 84/329 (25%), Positives = 158/329 (48%)
Query: 138 VVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+ P + N L+ +Q +G+ ++ E I+ADEMGLGKT+Q I L+ L
Sbjct: 510 IPQPTIFNGKLKGYQLKGMNWLANLY-----EQGINGILADEMGLGKTVQSIALLAHLAE 564
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQT 255
+ + P + I++P+S + NW E T+++ + LP G ++ + S
Sbjct: 565 RENIWGPFL----IISPASTLNNWHQEFTRFVP-KFKVLPYWGNPHDRKVIRRFWSQKTL 619
Query: 256 YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRV 315
Y + +++ SY+ + + ++ DE LK+ S ++ L+ + + R+
Sbjct: 620 YTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRL 679
Query: 316 LLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375
LL+GTPIQN + E ++L+HF+ + + +EF + + I +S A + N+ L
Sbjct: 680 LLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHAENKSAIDENQ-L 734
Query: 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGE 435
+L I+ ++RR + L K E + ++T QK LY L ++ ++
Sbjct: 735 SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSM 794
Query: 436 -NTKLGMTALSSITSL----KKLCNHPDL 459
+T+ SS+ +L +K+CNHP+L
Sbjct: 795 GSTQQAQNTTSSLMNLVMQFRKVCNHPEL 823
Score = 38 (18.4 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 684 CVNGIQVKPPPLESDCTD 701
CV +V PL+S C D
Sbjct: 1014 CVASPRVTAVPLDSYCND 1031
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 298 (110.0 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 81/283 (28%), Positives = 140/283 (49%)
Query: 141 PVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPL 200
PV +R +Q EG++++ + + G I+ADEMGLGKT+Q I+L+ ++ +
Sbjct: 196 PVTGGKMRKYQLEGLEWL----KSLWMNGLCG-ILADEMGLGKTVQAISLI-AFFKEHNV 249
Query: 201 AKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRR- 259
+ P + I AP S V NW +E +W G L G++ E FM ++
Sbjct: 250 SGPFL----ISAPLSTVSNWVDEFARWTPGIKTVLY--HGTRDERAQLRKKFMNLRDQKS 303
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319
P P++ SYE + L + + ++ DEGHRLKN + + L+ + R+L++G
Sbjct: 304 PDFPVVCTSYEICMNDRKFLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITG 363
Query: 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379
TP+QN++ E +SL+HF+ I F+ ++ + + ER K + +
Sbjct: 364 TPLQNNITELWSLLHFLLPEIFNDLNSFQNWFDFSSVLDNNGQTDMIERRKRT-LVSTMH 422
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
I+ L+RR + LP K E ++ +T QK+LY ++
Sbjct: 423 SILKPFLLRRVKTDVESALPKKREYILYAPLTLEQKDLYREIL 465
Score = 267 (99.0 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 52/156 (33%), Positives = 93/156 (59%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER-LSKLRGYKYVRLDGSMTI 550
L+ S K+++LD ++ + + KI++ S + LD+ + + LR + R+DG+++
Sbjct: 621 LVTASGKMLLLDRLIPCL-LNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQ 679
Query: 551 KKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R ++ FN + IF+LS++AGG G+NL+ A+ +++FD DWNP D QA R R
Sbjct: 680 ADRQAQIKAFNTDKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRI 739
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQ KP VYR + G++E+ ++++ K+ L V+
Sbjct: 740 GQTKPVIVYRLATKGTVEQTLLEKADSKRRLERLVI 775
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 301 (111.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 95/337 (28%), Positives = 164/337 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+L+ L+ +Q +G+ ++ + I+ADEMGLGKT+Q I+++ L +
Sbjct: 701 ILACTLKEYQLKGLNWLANLY-----DQGINGILADEMGLGKTVQSISVLAHLAENHNIW 755
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNK-LNSFMQT----Y 256
P + +V P+S + NW NEI+K+L + LP G + D K L F Y
Sbjct: 756 GPFL----VVTPASTLHNWVNEISKFLP-QFKILPYWGNAN---DRKVLRKFWDRKNLRY 807
Query: 257 GRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
+ ++V SY+ + A+ L K + ++ DE +K+ +S ++ L+ + R+L
Sbjct: 808 NKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLL 867
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAE-RTKANER- 374
L+GTPIQN + E ++L+HF+ + + EF + + I S AE TK N++
Sbjct: 868 LTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWFSKDI-------ESHAEANTKLNQQQ 920
Query: 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS------DAVR 428
L +L I+ ++RR + L K E V +T Q +LY ++KS DA+
Sbjct: 921 LRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLY-QVLKSQISTNYDAIE 979
Query: 429 R------TMKGGENTKLGMTALSSITSLKKLCNHPDL 459
T N+ ++++ +K+CNHPDL
Sbjct: 980 NAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDL 1016
Score = 279 (103.3 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 57/152 (37%), Positives = 88/152 (57%)
Query: 496 SAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAK 555
SAKL LD +L +K + ++++ T+ +DL E R Y ++RLDGS ++ R
Sbjct: 1298 SAKLRKLDELLVKLK-SEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRD 1356
Query: 556 VVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKP 615
+V + F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R GQ +
Sbjct: 1357 LVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQ 1416
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
VYR L G+IEE+M R K+ + V++
Sbjct: 1417 VTVYRLLVRGTIEERMRDRAKQKEQVQQVVME 1448
Score = 50 (22.7 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 428 RRTMKGGENTKLGMTALSSITSLK 451
+R+ +TKL M +LS ITS K
Sbjct: 298 KRSSSSSSSTKLSMNSLSLITSKK 321
Score = 40 (19.1 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 44 DNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGV 94
+ EDE N + P + E++ + I K +++ LN+ Y G+
Sbjct: 678 EEEDELNFQNPTSLGEITIEQPKILACTLKEYQLKGLNWLANLYDQGINGI 728
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 506 (183.2 bits), Expect = 1.5e-45, P = 1.5e-45
Identities = 146/497 (29%), Positives = 240/497 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 606 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 658
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 659 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 718
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 719 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 775
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 776 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 832
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 833 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 883
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 884 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 942
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 943 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1002
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE S H
Sbjct: 1003 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDES-RHC 1061
Query: 678 KIKCSRCVNGIQVKPPP 694
S + PPP
Sbjct: 1062 STG-SGSASFAHTAPPP 1077
Score = 308 (113.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 548 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 602
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 603 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 652
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 653 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 711
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 712 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 769
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 770 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 828
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 829 GGTK---TLMNTIMQLRKICNHP 848
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 310 (114.2 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 69/197 (35%), Positives = 110/197 (55%)
Query: 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509
L+K CNHP L+ I P +K + L+ S K ++LD ML +
Sbjct: 568 LRKCCNHPYLIEYPID-------------PV--TQEFKIDEELVTNSGKFLILDRMLPEL 612
Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIF 569
K K++L S T+ LD+ R + + RLDGSM+ +R K + +FN + FIF
Sbjct: 613 K-ARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIF 671
Query: 570 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEE 629
++S++AGG G+NL A+ ++++D DWNP +D QA R R GQ KP VYR ++ +I++
Sbjct: 672 LVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQ 731
Query: 630 KMMQRQAHKKALSSCVV 646
K+++R A K+ L ++
Sbjct: 732 KIVERAAAKRKLEKLII 748
Score = 253 (94.1 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 72/279 (25%), Positives = 142/279 (50%)
Query: 146 ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
++R +Q EG++++ + E+ I+ADEMGLGKT+QCI + ++++G + P +
Sbjct: 223 VMRWYQVEGMEWLR-----MLWENGINGILADEMGLGKTVQCIATIALMIQRG-VPGPFL 276
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+ P S + NW E ++ + + + G++ E + + + G ++P++
Sbjct: 277 ----VCGPLSTLPNWMAEFQRFTPD-IPTM-LYHGTQQERRKLVKNIHKRKGTLQIHPVV 330
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+ S+E + L ++ DEGHR+KN + + + L A ++LL+GTP+QN+
Sbjct: 331 ITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNN 390
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILR--GQDSCASDAERTKANERLEQLIGIVN 383
L E +SL++F+ + + F ++ L +D A + E+ L L I+
Sbjct: 391 LSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNV----LHMLHQILT 446
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
L+RR + ++ +P K E VV ++ Q+ YT ++
Sbjct: 447 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIV 485
Score = 45 (20.9 bits), Expect = 9.8e-24, Sum P(2) = 9.8e-24
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 406 VCIKMTDLQKELYTNLIKSDAVRRTMKGGENTK 438
+C++ DLQK +N I D + +T++ +NTK
Sbjct: 169 LCVE--DLQKNKDSNSIIKDRLSQTVR--QNTK 197
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 311 (114.5 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 103/353 (29%), Positives = 179/353 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
+D K++ + + P+ + LR +Q++GV ++ + ++ +G I+ D+MGLGKTLQ
Sbjct: 1248 LDGKKLENYKIPVPINAE-LRKYQQDGVNWL-AFLNKYKL---HG-ILCDDMGLGKTLQS 1301
Query: 188 ITLMW-------TLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPID-G 239
I ++ + LA+ + +++V P +L +W +E+ K+ P+
Sbjct: 1302 ICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKEYLN-PLHYT 1360
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
G E ++ +Q +R + ++V SY+ R+ + + DEGH +KN +
Sbjct: 1361 GPPTE---RIR--LQHQVKR--HNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGK 1413
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L A R++LSGTPIQN++LE +SL F+ G LGT ++F +Y PIL +
Sbjct: 1414 TKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASR 1473
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S E+ ++ L V L+RR + + LP K Q ++ LQ +LY
Sbjct: 1474 DARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYE 1533
Query: 420 NLIKSDA---VRRTMKGG------ENTKLGMTA--LSSITSLKKLCNHPDLVM 461
+ KS A V T+ E KL T ++ L+KLCNHP LV+
Sbjct: 1534 DFAKSRAKCDVDETVSSAALSEETEKPKLKATGHVFQALQYLRKLCNHPALVL 1586
Score = 262 (97.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 79/255 (30%), Positives = 126/255 (49%)
Query: 435 ENTKLGMTA--LSSITSLKKLCNHPDLVMD------KIQTGADGFENAMNILPTGYAASY 486
E KL T ++ L+KLCNHP LV+ K T +N+ ++ +A
Sbjct: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKSTTEKLAVQNS-SLHDIQHAPKL 1616
Query: 487 KSGKLLIELSAKLMVLDTMLAVIK-MTTDDKIVLVSNYTQTLDLFER-LSK--LRGYKYV 542
+ K L+ L L T + + + +I++ LD+ E L K L Y+
Sbjct: 1617 SALKQLL-LDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYL 1675
Query: 543 RLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
RLDGS+ +R +V FN + + +L++ GG GLNL GA+ +V + DWNP D Q
Sbjct: 1676 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1735
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELR 662
AM R R GQK+ VYR ++ G++EEK+M Q K +++ V+ E + +L
Sbjct: 1736 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 1795
Query: 663 SLFQLEENTISDTHD 677
LF L+++ ++ D
Sbjct: 1796 DLFTLDKDGKAEKAD 1810
Score = 42 (19.8 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQT 302
S L + V LV+C+ K C++ T
Sbjct: 722 SALQRISVALVICEWAALQKECKAVT 747
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 502 (181.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 130/418 (31%), Positives = 220/418 (52%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQ 323
IL+ SY R + +++ V+ DEGH+++N + A + R++LSG+P+Q
Sbjct: 611 ILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQ 670
Query: 324 NDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVN 383
N+L E +SL F+ G LGT F +Q+ PI G S AS + A + L +N
Sbjct: 671 NNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTIN 730
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKE-LYTNLIKSD--AVRRTMKGGENTKL- 439
L+RR +K++ + + + D ++ L+ L + + E ++
Sbjct: 731 PYLLRR----------MKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRIL 780
Query: 440 -G-MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSA 497
G M S + +L+K+CNHPDL +G G +N I P + G + S
Sbjct: 781 NGEMQIFSGLVALRKICNHPDLF-----SG--GPKNLKGI-PDEELGEDQFGYW--KRSG 830
Query: 498 KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
K++V++++L + +++L S Q LD+ E + + Y Y+++DG+ I R ++
Sbjct: 831 KMIVVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLI 889
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
+N+ ++ F+F+L+++ GG G+NL GANR++++DPDWNP+ D QA R WR GQKK
Sbjct: 890 TRYNEDTSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVT 949
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDT 675
VYR L+ G+IEEK+ RQ K+ L++ V+ + R F ++L LF L S +
Sbjct: 950 VYRLLTAGTIEEKIYHRQIFKQFLTNRVLK-DPKQRRFFKSNDLYELFTLSSPDTSQS 1006
Score = 311 (114.5 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 83/254 (32%), Positives = 128/254 (50%)
Query: 209 IIVAPSSLVKNWCNEI-TKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVI 267
IIV P++++ W E T W RVA L G + + + + +G IL+
Sbjct: 561 IIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGSFTHKKEKLVRDIARCHG------ILIT 614
Query: 268 SYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLL 327
SY R + +++ V+ DEGH+++N + A + R++LSG+P+QN+L
Sbjct: 615 SYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLR 674
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLI 387
E +SL F+ G LGT F +Q+ PI G S AS + A + L +N L+
Sbjct: 675 ELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLL 734
Query: 388 RR--TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
RR + +S LP K EQV+ ++TD Q ++Y N I S V R + G M S
Sbjct: 735 RRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGE------MQIFS 788
Query: 446 SITSLKKLCNHPDL 459
+ +L+K+CNHPDL
Sbjct: 789 GLVALRKICNHPDL 802
Score = 51 (23.0 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 29 KEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSE 62
K+ C R P D+EDE + LP T+EE+ E
Sbjct: 354 KKPWDCDVR-PNAQGDSEDEESEYLP-TEEELEE 385
>DICTYBASE|DDB_G0293120 [details] [associations]
symbol:DDB_G0293120 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293120
GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000199 RefSeq:XP_629344.1
ProteinModelPortal:Q54C75 EnsemblProtists:DDB0233083 GeneID:8629068
KEGG:ddi:DDB_G0293120 InParanoid:Q54C75 OMA:KGCILAH Uniprot:Q54C75
Length = 2205
Score = 323 (118.8 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 90/339 (26%), Positives = 169/339 (49%)
Query: 137 VVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+++DP + L+PHQ GV+F+++ + + GCI+A MGLGK+LQ I + T R
Sbjct: 1503 ILLDPEIGCFLKPHQHSGVQFLWDNM----VFKGKGCILAHSMGLGKSLQVIAFLHTHNR 1558
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWL--GGRVAALPIDGGSKAEIDNKLNSFMQ 254
K L+ + P++ + NW E KWL + + + ++ + +F
Sbjct: 1559 YHKGTKYLL-----IVPANTLYNWEKEFKKWLPKSEKSTNIRVFAPRHKDLVRRFPTFDN 1613
Query: 255 TYGRRPVNPILVISYETFRS---------HASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
+ +L +++E+F S H S+ E ++ DEGHRLK+ +++ A
Sbjct: 1614 WFSG---GGVLAMTFESFSSTINRHIKERHPSIAKILETDFLIVDEGHRLKSTKTKISDA 1670
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
+K R+VLL+G P+QN+L+EY++++ ++ LG +EF+ ++ PI G S +++
Sbjct: 1671 ANLIKTHRKVLLTGYPLQNNLMEYYTMIDYIRPLHLGNEKEFKDRFVKPIAAGTKSESNE 1730
Query: 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPV-KTEQVVCIKMTDLQKELYTNLIKS 424
+ RL L ++ + R +L + + V K+E+++ +K TD+Q +L I
Sbjct: 1731 RDIKLMRGRLAALQSLIKDFVQRLGPEVLDREMQVSKSEKMILVKRTDIQSKLLEISI-- 1788
Query: 425 DAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDK 463
+N+ + L +CNHPD +++K
Sbjct: 1789 ----------QNSNFN-DHFAQYEVLTVVCNHPDGLLEK 1816
Score = 250 (93.1 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 59/170 (34%), Positives = 94/170 (55%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFER-LSKLRGYK---- 540
Y+ G ++E S K ++ +ML ++++V S TL+ E + K G+K
Sbjct: 1882 YRRG--IVERSNKFVLFFSMLKHFNQN-NERVVTFSFSISTLNQLEYFIQKKLGWKAGRD 1938
Query: 541 YVRLDGSMTIKKRAKVVETFNKTSNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 599
Y RLDGS K R ++++ FN +N+ +F++S+KAG G NL G R+++ D WNP +
Sbjct: 1939 YFRLDGSTPTKTRQRLIDQFNDMANDIKLFLISTKAGSLGTNLTGGTRVILMDLSWNPVH 1998
Query: 600 DDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
D QA+ R +R GQK VY + G+ E+K + +K+ LS VD E
Sbjct: 1999 DRQAVYRCYRMGQKNQVHVYTLVMAGTGEQKTYTQMIYKQTLSKRAVDSE 2048
Score = 45 (20.9 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
Identities = 19/87 (21%), Positives = 40/87 (45%)
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
P+ R + S ++D ER ++ + I + +S+ +K +K + ++ +
Sbjct: 535 PMTRSR-STSTDNERDGKGKKSNKKETISKKSSSSSSSSSTTKQFDIKPKNDENNRLLKI 593
Query: 414 QKELYTNLIKSDAVR-RTMKGGENTKL 439
++E N+ KSD + + K E KL
Sbjct: 594 EEEKAPNVYKSDKEKNKEKKKLEKEKL 620
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 299 (110.3 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 738 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 781
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 782 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 840
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 841 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 900
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 901 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 936
Score = 272 (100.8 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 501 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 556
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 557 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 614
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 615 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 674
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 675 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 717
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 718 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 768
Score = 37 (18.1 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1248 FDIDWGKEDDSNLLIGIYEYG 1268
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 299 (110.3 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 737 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 780
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 781 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 839
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 840 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 899
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 900 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 935
Score = 272 (100.8 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 500 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 555
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 556 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 613
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 614 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 673
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 674 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 716
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 717 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 767
Score = 37 (18.1 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1247 FDIDWGKEDDSNLLIGIYEYG 1267
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 279 (103.3 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 58/176 (32%), Positives = 100/176 (56%)
Query: 490 KLLIELSA-KLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSM 548
K L++ KL L T+L + + + ++ + T+ LD+ E+ + GY+Y+RLDG+
Sbjct: 1358 KTLLQYDCGKLQKLATLLQELT-SQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGAT 1416
Query: 549 TIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVW 608
I+ R + E FN+ +F+LS+++GG G+NL GA+ ++ +D DWNPA D Q R
Sbjct: 1417 KIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCH 1476
Query: 609 RDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
R GQ + +YRF+S +IE ++++ K+ L + V+ E +F +R L
Sbjct: 1477 RIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDL 1532
Score = 235 (87.8 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 73/281 (25%), Positives = 135/281 (48%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
++ K++ V + +L LRP+Q++G+ ++ + G I+ADEMGLGKT+Q
Sbjct: 805 VNGSKVK-DVPIPSLLRGTLRPYQKQGLNWLASLYNN----NTNG-ILADEMGLGKTIQT 858
Query: 188 ITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDN 247
I+L+ L + P +I+ P+S++ NW E K+ G L G +
Sbjct: 859 ISLLAYLACEHHKWGP----HLIIVPTSVMLNWEMEFKKFAPG-FKVLTYYGSPQQRAQK 913
Query: 248 KLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALM 307
+ + + + + + SY+ + ++ DE H +KN S ++AL+
Sbjct: 914 R-----KGWNKPDAFHVCITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALL 968
Query: 308 GLKAKRRVLLSGTPIQNDLLEYFSLVHF------VNQGI---LGTAQEFRKQYETPILRG 358
+ R+LL+GTP+QN+L+E +SL++F VNQ + +F++ + P+ R
Sbjct: 969 NFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKVNQAMPEGFANLDDFQQWFGKPVNRI 1028
Query: 359 -QDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYL 398
+ + A +++ NER Q + R + R +L YL
Sbjct: 1029 LEQTSAGNSDLIDENERTTQKMDEETRNTVARLHQVLRPYL 1069
Score = 105 (42.0 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 365 DAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKS 424
D E RL Q ++ L+RR + K +P K E +V +++ Q+ LY + +
Sbjct: 1051 DEETRNTVARLHQ---VLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSR 1107
Query: 425 DAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL 459
+ T+ G ++ ++ + L+K+CNHPDL
Sbjct: 1108 AKTKETLASGNF----LSIINCLMQLRKVCNHPDL 1138
Score = 48 (22.0 bits), Expect = 2.5e-45, Sum P(4) = 2.5e-45
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 39 PLGSVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREG 98
PL + +DE + +T++ + N + + VP N+T Y+T + + +
Sbjct: 312 PLEIIQLKDEVIAAPKLTEKLQNFLNNDFKTPIIDESNVPDYNFTRDEYNT-IMSQQEKL 370
Query: 99 ARKALHDPTAPNALVL 114
RK H N+L L
Sbjct: 371 LRKLYHKVNIENSLEL 386
Score = 38 (18.4 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 3 SLAPSQLSKRSPEDSPGIKTFPPPVK--KEKRSCTSRKPLGSVDNED 47
SL+ +L K+ + ++ V KE+ S TS + S D++D
Sbjct: 605 SLSVEELRKKYADLETSVEPLSSNVTSDKERESETSSEDAESSDDDD 651
Score = 37 (18.1 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 134 QVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCI 188
++H V+ P L L+ + + YE + R+ + D M KT + +
Sbjct: 1060 RLHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETL 1114
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 299 (110.3 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 721 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 764
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 765 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 823
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 824 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 883
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 884 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 919
Score = 272 (100.8 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 484 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 539
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 540 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 597
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 598 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 657
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 658 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 700
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 701 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 751
Score = 37 (18.1 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1231 FDIDWGKEDDSNLLIGIYEYG 1251
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 299 (110.3 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 751 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 794
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 795 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 853
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 854 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 913
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 914 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 949
Score = 272 (100.8 bits), Expect = 2.7e-45, Sum P(2) = 2.7e-45
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 514 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 569
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 570 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 627
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 628 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 687
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 688 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 730
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 731 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 781
Score = 37 (18.1 bits), Expect = 9.5e-18, Sum P(2) = 9.5e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1259 FDIDWGKEDDSNLLIGIYEYG 1279
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 299 (110.3 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 735 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDD---NEFYNKQEAL-----------QH 778
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 779 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 837
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 838 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 897
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 898 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 933
Score = 271 (100.5 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 88/291 (30%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 498 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWAPQMN 553
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE S L + DE
Sbjct: 554 AVVYLGDITSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDE 611
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 612 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 671
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 672 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 714
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 715 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 765
Score = 38 (18.4 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1245 FDIDWGKEDDSNLLVGIYEYG 1265
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 296 (109.3 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 61/155 (39%), Positives = 92/155 (59%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL LD +L +K + ++++ S T+ +DL E R + Y+RLDGS I
Sbjct: 1104 LITDSGKLHALDLLLTRLK-SQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1162
Query: 552 KRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
+R +V F ++ F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R G
Sbjct: 1163 ERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1222
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
Q K VYR + G+IEE+++QR K + V+
Sbjct: 1223 QTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI 1257
Score = 273 (101.2 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 88/331 (26%), Positives = 159/331 (48%)
Query: 138 VVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+ P + N L+ +Q +G+ ++ E I+ADEMGLGKT+Q I L+ L
Sbjct: 513 IPQPTIFNGKLKGYQLKGMNWLANLY-----EQGINGILADEMGLGKTVQSIALLAHLAE 567
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQT 255
+ + P + I++P+S + NW E +++ + LP G ++ K S
Sbjct: 568 RENIWGPFL----IISPASTLNNWHQEFARFVP-KFKVLPYWGNPHDRKVIRKFWSQKTL 622
Query: 256 YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRV 315
Y + +++ SY+ + + ++ DE LK+ S ++ L+ + + R+
Sbjct: 623 YTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRL 682
Query: 316 LLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375
LL+GTPIQN + E ++L+HF+ + + +EF + + I +S A + N+ L
Sbjct: 683 LLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHAENKSAIDENQ-L 737
Query: 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT---NLIKSDAVRRTMK 432
+L I+ ++RR + L K E ++ + T QK LY N I D + ++
Sbjct: 738 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSM 797
Query: 433 GGENTKLGMTALSSITSL----KKLCNHPDL 459
G T+ T SS+ +L +K+CNHP+L
Sbjct: 798 G--TTQQAQTTTSSLMNLVMQFRKVCNHPEL 826
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 328 (120.5 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 91/301 (30%), Positives = 158/301 (52%)
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI-KSDAVRRTM 431
E++ +L I+ +RR + + P K E ++ + MT +QK LY +++ K+ ++ R +
Sbjct: 755 EKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNI 814
Query: 432 KGGENTKLG----MTALSSIT-SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASY 486
G NT T+L++I L+K HP + I+ N LP Y +
Sbjct: 815 TGYANTSSSGGQRTTSLNNILMQLRKTLAHPYIYSPDIED-----RN----LP--YELAM 863
Query: 487 KSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
+S L E S K ++L ++ + +T +I+L S + Q LD+ E + + Y R DG
Sbjct: 864 RS---LEEASCKFLILRLLVPKL-ITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDG 919
Query: 547 SMTIKKRAKVVETFNKTSNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
+ + +R +++FN ++E F+LS++AGG G+NL A+ +++ DPD+NP D QA+A
Sbjct: 920 ASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIA 979
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLF 665
R R GQKK V+ + S+EEK++Q K L +V+ + H S +L S+
Sbjct: 980 RAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVESLDQ--NHNSEKDLESIL 1037
Query: 666 Q 666
+
Sbjct: 1038 R 1038
Score = 238 (88.8 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 62/205 (30%), Positives = 105/205 (51%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L P+Q +G+ ++Y +R + CI+ADEMGLGKT+Q I+ + L + P++
Sbjct: 556 LMPYQLKGLNWLY-----LRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCF-PVL- 608
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
++ P + V NW E+ KW + + + Q + +LV
Sbjct: 609 ---VIVPHATVANWERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLV 665
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
IS S+L K + +++ DEG RLKN +S + L +K+ ++LL+GTP+QN++
Sbjct: 666 ISASNVEREISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNV 725
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQY 351
E F+L+ F+N + A E K+Y
Sbjct: 726 RELFNLLQFLNPMKINAA-ELEKRY 749
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 510 (184.6 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 799 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 851
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 852 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 911
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 912 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 968
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 969 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1025
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1026 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1076
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1077 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1135
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1136 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1195
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1196 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1253
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1254 EVPDDETVN 1262
Score = 308 (113.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 741 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 795
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 796 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 845
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 846 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 904
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 905 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 962
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 963 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1021
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1022 GGTK---TLMNTIMQLRKICNHP 1041
Score = 40 (19.1 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1322 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1364
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 510 (184.6 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1261
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1262 EVPDDETVN 1270
Score = 308 (113.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1330 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1372
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 510 (184.6 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1261
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1262 EVPDDETVN 1270
Score = 308 (113.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1330 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1372
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 510 (184.6 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1261
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1262 EVPDDETVN 1270
Score = 308 (113.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1330 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1372
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 510 (184.6 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1261
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1262 EVPDDETVN 1270
Score = 308 (113.5 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 3.4e-45, Sum P(2) = 3.4e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.4e-21, Sum P(3) = 4.4e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1330 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1372
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 510 (184.6 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 143/489 (29%), Positives = 239/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1261
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1262 EVPDDETVN 1270
Score = 308 (113.5 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 3.5e-45, Sum P(2) = 3.5e-45
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 504 (182.5 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 139/487 (28%), Positives = 237/487 (48%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q IT ++ + +G + P + ++AP S + NW E W V
Sbjct: 1033 CILADEMGLGKTIQSITFLYEIYLKG-IHGPFL----VIAPLSTIPNWEREFRTWTELNV 1087
Query: 233 AALPIDGGSKAEIDNKLNSFMQTYGRRPVNPI----LVISYETFRSHASVLHKNEVGLVL 288
S+ I + T GR ++ ++E + L V+
Sbjct: 1088 VVYHGSQASRKTIQAYEMYYRDTQGRIIKGAYKFHAVITTFEMILTDCPELRNVPWRCVI 1147
Query: 289 CDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFR 348
DE HRLKN + + L + + +VLL+GTP+QN + E FSL++F+ + F
Sbjct: 1148 IDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPDRFPSESTFM 1207
Query: 349 KQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCI 408
+++ D K E++++L GI+ ++RR + K L K E ++ +
Sbjct: 1208 QEF------------GDL---KTEEQVQKLQGILKPMMLRRLKEDVEKNLAPKEETIIEV 1252
Query: 409 KMTDLQKELYTNLIKSDAV---RRTMKGGENTKLGMTA---LSSITSLKKLCNHPDLVMD 462
++T++QK+ Y +++ + + GG G L+++ L+K CNHP L+
Sbjct: 1253 ELTNVQKKYYRAILEKNFAFLSKSGAGGGSGGGGGSNVPNLLNTMMELRKCCNHPYLI-- 1310
Query: 463 KIQTGADGFENAMNILPTGYAASYKSGKL--LIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
GA+ E M + L +I+ + KL+++D +L +K ++++
Sbjct: 1311 ---NGAE--EKIMEEFRETHPLDQPEFHLQAMIQAAGKLVLIDKLLPKLK-AGGHRVLIF 1364
Query: 521 SNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCG 579
S + LD+ E R Y Y R+DG + R ++ F++ S+ F+F+L ++AGG G
Sbjct: 1365 SQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLG 1424
Query: 580 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639
+NL A+ ++FD DWNP ND QA AR R GQ K +YR ++ S E +M + + K
Sbjct: 1425 INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKL 1484
Query: 640 ALSSCVV 646
L V+
Sbjct: 1485 GLDKAVL 1491
Score = 235 (87.8 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 86/322 (26%), Positives = 145/322 (45%)
Query: 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203
+N LR +Q EGV ++ R CI+ADEMGLGKT+Q IT ++ + +G + P
Sbjct: 1009 ANALREYQLEGVNWLLFNWYNTR-----NCILADEMGLGKTIQSITFLYEIYLKG-IHGP 1062
Query: 204 LIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNP 263
+ ++AP S + NW E W V S+ I + T GR
Sbjct: 1063 FL----VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIKGA 1118
Query: 264 I----LVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSG 319
++ ++E + L V+ DE HRLKN + + L + + +VLL+G
Sbjct: 1119 YKFHAVITTFEMILTDCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTG 1178
Query: 320 TPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLI 379
TP+QN + E FSL++F+ + F +++ L+ ++ + L +L
Sbjct: 1179 TPLQNTVEELFSLLNFLEPDRFPSESTFMQEFGD--LKTEEQ-VQKLQGILKPMMLRRLK 1235
Query: 380 GIVNRCLIRRTSALLSKYLP-VKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTK 438
V + L + ++ L V+ + I L+K + L KS A + GG +
Sbjct: 1236 EDVEKNLAPKEETIIEVELTNVQKKYYRAI----LEKN-FAFLSKSGAGGGSGGGGGSNV 1290
Query: 439 LGMTALSSITSLKKLCNHPDLV 460
+ L+++ L+K CNHP L+
Sbjct: 1291 PNL--LNTMMELRKCCNHPYLI 1310
Score = 55 (24.4 bits), Expect = 3.8e-45, Sum P(2) = 3.8e-45
Identities = 28/100 (28%), Positives = 41/100 (41%)
Query: 25 PPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSE-HENLIRQILAKP--FKVPILN 81
P KK K+ ++P + + K P T +E E E ++ KP K P
Sbjct: 692 PAEKKSKKKPKEKEPKEPKEPKTPKTPKTPKTPKEPKEPKEKKVKTATPKPKSSKKPSAK 751
Query: 82 YTGG--GYSTKALGVRREGARKALHDPTAPNALVLYTPPQ 119
+ G STK +E RK +P+ + V TPPQ
Sbjct: 752 KSDSESGNSTK-----KEAKRK--REPSVTSD-VEKTPPQ 783
Score = 48 (22.0 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 579 GLNLIGANRLVMFD-PDWNPANDDQAMARVWRDGQKKPCFV----YRFLSTGSI--EEKM 631
G + GA M D P W N + A+A W D K+ F+ + L TG + EE +
Sbjct: 2755 GRKMGGAMAPPMKDLPRWLVENPEYAIAPDWTDIVKQSGFLPESMFDRLLTGPVVREEGV 2814
Query: 632 MQRQAHKKA 640
+R KA
Sbjct: 2815 RRRGRRPKA 2823
Score = 48 (22.0 bits), Expect = 7.7e-15, Sum P(3) = 7.7e-15
Identities = 35/156 (22%), Positives = 53/156 (33%)
Query: 578 CGLNLIGANRLVMFDPDW-NPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA 636
C L+ G + F D P D Q+ G P R G + R
Sbjct: 1702 CLLHYRGDENIKGFIWDLITPTEDGQSRTLTNHSGLSAPVPRGRKGKKGKLPVAQT-RMP 1760
Query: 637 HKKALSSCVVDC---EEDVARHFS------MSELRSLFQLEENTISDTHDKIKCSRCVNG 687
L+ C D E+ RH + +R L+ L + I D D+I +
Sbjct: 1761 QADWLADCNPDLLLQEDSYKRHLKHHCNKVLLRVRMLYYLRQEVIGDQADRILEGTDSSE 1820
Query: 688 IQVK-PPPLESDCTDDLSCWHHVTEKRWLVDPILKH 722
+ + P P +D D W +K L+ + KH
Sbjct: 1821 LDIWIPQPFHADVPTDW--WDLDADKSLLIG-VFKH 1853
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 507 (183.5 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 144/489 (29%), Positives = 237/489 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +LV +
Sbjct: 819 LIIVPLSTLSNWVYEFDKWAPS-VVKVSYKGSPAAR-----RAFLPILRSGKFN-VLVTT 871
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE VL K ++ DEGHR+KN + Q L A RRVLL+GTP+QN L
Sbjct: 872 YEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLP 931
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 932 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 988
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 989 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1045
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1046 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGSDLYRASGKFEL 1096
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E R +KY+RLDG+ + R +++ FN
Sbjct: 1097 LDRILPKLR-ATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFN 1155
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
S++ FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1156 DPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1215
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + D
Sbjct: 1216 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ--DEEED 1273
Query: 678 KIKCSRCVN 686
++ VN
Sbjct: 1274 EVPDDETVN 1282
Score = 316 (116.3 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 107/350 (30%), Positives = 166/350 (47%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I L+ L+ L P + I+ P S + NW E KW V
Sbjct: 788 ILADEMGLGKTIQTIALITYLMEFKRLNGPFL----IIVPLSTLSNWVYEFDKWAPS-VV 842
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
+ G A +F+ N +LV +YE VL K ++ DEGH
Sbjct: 843 KVSYKGSPAAR-----RAFLPILRSGKFN-VLVTTYEYIIKDKQVLAKLRWKYMIVDEGH 896
Query: 294 RLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE 352
R+KN + Q L A RRVLL+GTP+QN L E ++L++F+ I + F + +
Sbjct: 897 RMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN 956
Query: 353 TPI-LRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT 411
P + G+ ++ E RL + ++ L+RR + LP K E V+ M+
Sbjct: 957 APFAMTGEKVDLNEEETILIIRRLHK---VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMS 1013
Query: 412 DLQKELYTNL-----IKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQT 466
LQ+ LY ++ + +D + KG TK T +++I L+K+CNHP + ++
Sbjct: 1014 ALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK---TLMNTIMQLRKICNHPYMFQHIEES 1070
Query: 467 GAD--GFENAMNILPTGYAASYKSGKLLIELSAKLMVLD-TMLAVIKMTT 513
++ GF + Y AS K +LL + KL + +L +MTT
Sbjct: 1071 FSEHLGFTGGIVQGSDLYRASGKF-ELLDRILPKLRATNHKVLLFCQMTT 1119
Score = 42 (19.8 bits), Expect = 5.4e-45, Sum P(2) = 5.4e-45
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP 49
PPP ++ S PLG D+ P
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSDHAPSP 133
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 326 (119.8 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
Identities = 97/351 (27%), Positives = 178/351 (50%)
Query: 128 IDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQC 187
++ K++ + P+ ++ LR +Q+EGV ++ + + +G I+ D+MGLGKTLQ
Sbjct: 1340 LNPSKVEAFSIPVPISAD-LRKYQQEGVNWL----AFLNKYELHG-ILCDDMGLGKTLQT 1393
Query: 188 ITLMWT-------LLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDG 239
I ++ + L + K ++IV PS+L +W E++ + +V+A
Sbjct: 1394 ICIVASDHYNRQKLFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPP 1453
Query: 240 GSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCE 299
+A+I +K+ + ++V SY+ R+ L K + + DEGH +KN
Sbjct: 1454 AERAKIRSKMKK----------SDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNAR 1503
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQ 359
++ +A+ L++ R++LSGTPIQN++LE +SL F+ G LGT + F++++ PI +
Sbjct: 1504 AKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASR 1563
Query: 360 DSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT 419
D+ +S ER + LE + V ++RR + LP K Q M+DLQ++L
Sbjct: 1564 DAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLN 1623
Query: 420 NLIKSDAVRRTMKGGENTKLGMTA---------LSSITSLKKLCNHPDLVM 461
+ + + ++ E K T ++ ++KLCNHP L++
Sbjct: 1624 DFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALIL 1674
Score = 252 (93.8 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
Identities = 78/288 (27%), Positives = 135/288 (46%)
Query: 410 MTDLQKELYTNL-IKSDAVRRTMKGGENTKLGMTA--LSSITSLKKLCNHPDLVMDKIQT 466
+ D +L N ++ D +T G K A ++ ++KLCNHP L++ +
Sbjct: 1622 LNDFVSQLNINEELEDDETEKTQ--GTRKKKSQKAHIFQALQYMRKLCNHPALILTEKHP 1679
Query: 467 GADGFENAMNILPTG-----YAASYKS-GKLLIEL-----SAKLMVLDTMLAVIKMTTDD 515
+ + +G +A + G+LL + S +D+ A+ ++
Sbjct: 1680 KRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDS--ALTNAVSEH 1737
Query: 516 KIVLVSNYTQTLDLFER---LSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLS 572
++++ LD+ E+ + + Y+RLDGS+ KR + V FN + + +L+
Sbjct: 1738 RVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLT 1797
Query: 573 SKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMM 632
+ GG GLNL GA+ ++ + DWNP D QAM R R GQKK VYR ++ G +EEK+M
Sbjct: 1798 THVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKIM 1857
Query: 633 QRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
Q K ++S VV+ + ++ LF NT +D ++
Sbjct: 1858 GLQRFKMNVASTVVNQQNAGLSSIGTDQILDLF----NTTADEQQTVQ 1901
Score = 39 (18.8 bits), Expect = 6.2e-45, Sum P(3) = 6.2e-45
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 41 GSVDNED--EPNSKLPMTKEEMSEHENLIRQILAKPF 75
G V+N PN P+ KEE + + KPF
Sbjct: 67 GIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPF 103
Score = 38 (18.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 352 ETPILRGQDSCASDAERTKANERLEQLIG-IVNR 384
+ P+L G + KA R L+G I+ R
Sbjct: 771 DEPMLNGDVEFVGEERMLKARLRASSLLGRIIGR 804
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 296 (109.3 bits), Expect = 6.5e-45, Sum P(2) = 6.5e-45
Identities = 61/155 (39%), Positives = 92/155 (59%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL LD +L +K + ++++ S T+ +DL E R + Y+RLDGS I
Sbjct: 1127 LITDSGKLHTLDLLLTRLK-SQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1185
Query: 552 KRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
+R +V F ++ F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R G
Sbjct: 1186 ERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1245
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
Q K VYR + G+IEE+++QR K + V+
Sbjct: 1246 QTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI 1280
Score = 270 (100.1 bits), Expect = 6.5e-45, Sum P(2) = 6.5e-45
Identities = 84/329 (25%), Positives = 158/329 (48%)
Query: 138 VVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+ P + N L+ +Q +G+ ++ E I+ADEMGLGKT+Q I L+ L
Sbjct: 509 IPQPTIFNGKLKGYQLKGMNWLANLY-----EQGINGILADEMGLGKTVQSIALLAHLAE 563
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSK-AEIDNKLNSFMQT 255
+ + P + I++P+S + NW E ++++ + LP G ++ K S
Sbjct: 564 RENIWGPFL----IISPASTLNNWHQEFSRFVP-KFKVLPYWGNPHDRKVIRKFWSQKTL 618
Query: 256 YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRV 315
Y + +++ SY+ + + ++ DE LK+ S ++ L+ + + R+
Sbjct: 619 YTQNAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRL 678
Query: 316 LLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL 375
LL+GTPIQN + E ++L+HF+ + + +EF + + I +S A + N+ L
Sbjct: 679 LLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDI----ESHAENKSAIDENQ-L 733
Query: 376 EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYT---NLIK-SDAVRRTM 431
+L I+ ++RR + L K E + ++T Q+ LY N I D ++ +M
Sbjct: 734 SRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNKISIEDLLQSSM 793
Query: 432 KGGENTKLGMTALSSIT-SLKKLCNHPDL 459
+ ++L ++ +K+CNHPDL
Sbjct: 794 GSAQQAHSTTSSLMNLVMQFRKVCNHPDL 822
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 299 (110.3 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 75/216 (34%), Positives = 118/216 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 739 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 782
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 783 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 841
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 842 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 901
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQKK +YR ++ GS+EE +++R K L V+
Sbjct: 902 GQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 937
Score = 267 (99.0 bits), Expect = 7.8e-45, Sum P(2) = 7.8e-45
Identities = 89/291 (30%), Positives = 143/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 502 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 557
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + QT R N IL+ +YE + L + DE
Sbjct: 558 AVVYLGDINSRNMIRTHEWTHHQTK-RLKFN-ILLTTYEILLKDKAFLGGLNWAFIGVDE 615
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 616 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 675
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 676 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 718
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 719 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 769
Score = 37 (18.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1249 FDIDWGKEDDSNLLIGIYEYG 1269
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 295 (108.9 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 96/317 (30%), Positives = 155/317 (48%)
Query: 375 LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG- 433
LE+ I I R +L+ +L + ++ V +KEL + S + K
Sbjct: 410 LEKFQDINKEEQISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAV 469
Query: 434 -GEN----TKLGMTALSSIT-SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYK 487
N TK +S++ L+++C+HP L+ D FE P A+
Sbjct: 470 ITNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLPD--------FE------PRFEDANEA 515
Query: 488 SGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGS 547
KLL E S KL +LD M+ +K ++++ + + TL L E + + Y R+DG
Sbjct: 516 FTKLL-EASGKLQLLDKMMVKLK-EQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGK 573
Query: 548 MTIKKRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 606
++ +R ++ FN + SN F F+LS++AGG G+NL A+ ++++D DWNP D QAMAR
Sbjct: 574 ISGPERQVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMAR 633
Query: 607 VWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD----CEEDVARHFSMSELR 662
V R GQ +YR + G++EE+MM+ +K L VV C++++ +
Sbjct: 634 VHRLGQTNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGS-K 692
Query: 663 SLFQLEENTISDTHDKI 679
LF EEN + KI
Sbjct: 693 ELFS-EENDEAGRSGKI 708
Score = 266 (98.7 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 68/207 (32%), Positives = 110/207 (53%)
Query: 143 LSNILRPHQREGVKFM-YECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
L+ L +Q EG+ F+ Y + I+ADEMGLGKT+Q I + +L +
Sbjct: 221 LTGTLHTYQLEGLNFLRYSWSKKTNV------ILADEMGLGKTIQSIAFLASLFEEN--- 271
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
+ ++VAP S ++NW E W + + G S+A + F + GR+
Sbjct: 272 ---LSPHLVVAPLSTIRNWEREFATW-APHMNVVMYTGDSEARDVIWEHEFYFSEGRKSK 327
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTP 321
+L+ +YE SVL + ++ DEGHRLKN +S+ Y +L +K VLL+GTP
Sbjct: 328 FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTP 387
Query: 322 IQNDLLEYFSLVHFVNQGILGTAQEFR 348
+QN+L E F+L+HF++ G+ ++F+
Sbjct: 388 LQNNLNELFALMHFLDADKFGSLEKFQ 414
Score = 38 (18.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 629 EKMMQRQAHKKALSSCVVDCEEDVARH 655
EK++ QA + + VD E+++ ++
Sbjct: 1087 EKILAEQAKAETKGTSFVDAEKEMLKN 1113
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 289 (106.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 109/365 (29%), Positives = 171/365 (46%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EGV ++ +C ++ GCI+ DEMGLGKT Q I L+ L+ + P +
Sbjct: 40 LRSYQLEGVNWLVQCF---HCQN--GCILGDEMGLGKTCQTIALLIYLVGRLNDEGPFL- 93
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
++ P S++ NW E+ ++ G ++ + G K E Q G +L+
Sbjct: 94 ---VLCPLSVLSNWKEEMERFAPG-LSCVTYTG-DKEERARLQQDLRQESGFH----VLL 144
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE AS L ++ DE HRLKN S ++ L A R+LL+GTPIQN L
Sbjct: 145 TTYEICLKDASFLKSFSWSVLAVDEAHRLKNQSSLLHRTLSEFSAVFRLLLTGTPIQNSL 204
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+ V + R+Q E + R QD + E A+E L +L+ L
Sbjct: 205 RELYSLLCVVEPDLF-----CREQVEDFVQRYQDI---EKESKSASE-LHRLL---QPFL 252
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS 446
+RR A ++ LP KTE VV M+ LQK+ Y ++ D + + KL +
Sbjct: 253 LRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQ----NI 308
Query: 447 ITSLKKLCNHPDLV----MDKIQTGADGFENA--MNILPTGYAASYKSGKLLIELSAKLM 500
+T L+K +HP L + + G E + +++L A Y G ++ S
Sbjct: 309 LTQLRKCVDHPYLFDGVEPEPFEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTH 368
Query: 501 VLDTM 505
+LD +
Sbjct: 369 MLDIL 373
Score = 268 (99.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 59/162 (36%), Positives = 96/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G+ LIE S KL +LD +LA + + +++L S T LD+ + RGY Y R+D
Sbjct: 330 FEVGEHLIEASGKLHLLDRLLAFL-YSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVD 388
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F F+F+LS++AGG G+NL A+ ++ D D+NP ND QA A
Sbjct: 389 GSVRGEERHLAIKNFGNQPI-FVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAA 447
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ K V R + ++EE + ++ A K L++ V++
Sbjct: 448 RAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIE 489
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 506 (183.2 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 146/497 (29%), Positives = 240/497 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE S H
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDES-RHC 1262
Query: 678 KIKCSRCVNGIQVKPPP 694
S + PPP
Sbjct: 1263 STG-SGSASFAHTAPPP 1278
Score = 308 (113.5 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
Score = 37 (18.1 bits), Expect = 4.8e-21, Sum P(3) = 4.8e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 628 EEKMMQRQA-HKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIK 680
EEKM R + H+K VD + S++E + L +EE T+ + ++++
Sbjct: 1363 EEKMFGRGSRHRKE-----VDYSD------SLTEKQWLKAIEEGTLEEIEEEVR 1405
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 506 (183.2 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 146/497 (29%), Positives = 240/497 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW V + G A +F+ N +L+ +
Sbjct: 807 LIIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKFN-VLLTT 859
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 860 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 919
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 920 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK---VLRPFL 976
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGGENTKLGM 441
+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG TK
Sbjct: 977 LRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTK--- 1033
Query: 442 TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMV 501
T +++I L+K+CNHP + I+ + F + G+ G L S K +
Sbjct: 1034 TLMNTIMQLRKICNHP-YMFQHIE---ESFSEHL-----GFTGGIVQGLDLYRASGKFEL 1084
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
LD +L ++ T+ K++L T + + E RG+KY+RLDG+ + R +++TFN
Sbjct: 1085 LDRILPKLR-ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFN 1143
Query: 562 KTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
+ +E FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V R
Sbjct: 1144 EPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLR 1203
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHD 677
+ S+EEK++ +K + V+ ++ + H + L+++ + EE S H
Sbjct: 1204 LCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDES-RHC 1262
Query: 678 KIKCSRCVNGIQVKPPP 694
S + PPP
Sbjct: 1263 STG-SGSASFAHTAPPP 1278
Score = 308 (113.5 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 93/323 (28%), Positives = 157/323 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ +L+ +Q +G++++ + G I+ADEMGLGKT+Q I L+ L+ +
Sbjct: 749 MVNGVLKQYQIKGLEWLVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRIN 803
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW V + G A +F+
Sbjct: 804 GPFL----IIVPLSTLSNWAYEFDKWAPS-VVKVSYKGSPAAR-----RAFVPQLRSGKF 853
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 854 N-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHK-- 970
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNL-----IKSDAVRRTMKGG 434
++ L+RR + LP K E V+ M+ LQ+ LY ++ + +D + KG
Sbjct: 971 -VLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGK 1029
Query: 435 ENTKLGMTALSSITSLKKLCNHP 457
TK T +++I L+K+CNHP
Sbjct: 1030 GGTK---TLMNTIMQLRKICNHP 1049
Score = 40 (19.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEP-NSKLPMTKEEMS 61
PPP ++ S PLG ++ P + P + +MS
Sbjct: 108 PPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMS 146
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 301 (111.0 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 75/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN IL +
Sbjct: 744 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEILLS----------- 787
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 788 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 846
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 847 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 906
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 907 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 950
Score = 257 (95.5 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 486 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 539
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 540 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 596 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 656 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 699
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 700 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 731
Score = 46 (21.3 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 6 PSQLSKRSPEDSPGIKTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
P Q ++ P +T P P VKK+ K RK S D++DE
Sbjct: 169 PEQKKVKARRPVPR-RTVPKPRVKKQPKTQRGKRKKQDSSDDDDE 212
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 282 (104.3 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 107/367 (29%), Positives = 170/367 (46%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LRP+Q +GV ++ +C ++ GCI+ DEMGLGKT Q I L L A L D
Sbjct: 48 LRPYQLQGVNWLAQCF---HCQN--GCILGDEMGLGKTCQTIALFIYL------AGRLND 96
Query: 207 KA--IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPI 264
+ +I+ P S++ NW E+ ++ G ++ + G K +K Q + +
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERFAPG-LSCVTY-AGDK----DKRACLQQDLKQESRFHV 150
Query: 265 LVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
L+ +YE AS L +++ DE HRLKN S ++ L +LL+GTPIQN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQN 210
Query: 325 DLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNR 384
L E +SL+ FV + ++Q E + R QD K +E +L ++
Sbjct: 211 SLQELYSLLSFVEPDLFS-----KEQVEDFVQRYQDI-------EKESESASELYKLLQP 258
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTAL 444
L+RR A ++ LP KTE V+ M+ LQK+ Y ++ D + + KL L
Sbjct: 259 FLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKL-QNVL 317
Query: 445 SSITSLKKLCNHPDLV----MDKIQTGADGFENA--MNILPTGYAASYKSGKLLIELSAK 498
S L+K +HP L + + G E + +++L A Y G ++ S
Sbjct: 318 SQ---LRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQM 374
Query: 499 LMVLDTM 505
+LD +
Sbjct: 375 TQMLDIL 381
Score = 274 (101.5 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 60/162 (37%), Positives = 97/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G LIE S KL +LD +LA + + +++L S TQ LD+ + RGY Y R+D
Sbjct: 338 FEIGDHLIEASGKLHLLDKLLAFL-YSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVD 396
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F + F F+LS++AGG G+NL A+ ++ FD D+NP ND QA A
Sbjct: 397 GSVRGEERHLAIKNFGQQPI-FTFLLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAA 455
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ K V R + ++EE + ++ A K L++ +++
Sbjct: 456 RAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 497
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 491 (177.9 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 170/522 (32%), Positives = 258/522 (49%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I + L +G + P +I PSS + NW E+ W +
Sbjct: 470 ILADEMGLGKTIQAIAFLAHLYEKG-IKGP----HLITVPSSTLDNWVRELGLWCPS-LK 523
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYE-TF-RSH-ASVLHKNEVGLVLCD 290
L I GS E L + T G N I+V +Y T H S+ K ++ + D
Sbjct: 524 VL-IYYGS-VEDRKYLRQDILT-GLIDFN-IIVSTYNLTIGNDHDRSLFRKLKLKYAVFD 579
Query: 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTA-QEFRK 349
EGH LKN S Y+ LM + A+ R+LL+GTP+QN+LLE SL++F+ + ++ + K
Sbjct: 580 EGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSSTSQISK 639
Query: 350 QYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIK 409
+ T +S+ E + +R+ Q I+ ++RR + + K LP K E++
Sbjct: 640 MFSTR--------SSEEESSFHKDRIAQARLIMKPFILRRVKSEVLKELPPKMEKIEMCP 691
Query: 410 MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDL-----VMDKI 464
M+D Q +LY L K +++T G+ +L + + L+K+ NHP L DK+
Sbjct: 692 MSDAQHKLYDILFKR--LKKT-PNGDKREL----CNVMMQLRKMANHPLLHRQYYTSDKL 744
Query: 465 QT------------GADG--FENAMNILPT----GYAASYKS--G----KLLIELSAKLM 500
AD + M ++ Y S G K LI S K
Sbjct: 745 AAMSKAMLKEPTHYDADPALIQEDMEVMSDFELHNLCREYSSISGFQLEKALILDSGKFA 804
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+L LA +K D++VL S +T LD+ E L K ++YVRLDGS + +R +++ +
Sbjct: 805 LLTKTLAKLK-EKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGLIDKY 863
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N F+F+LS++AGG G+NL AN +++ D D NP ND QA R R GQ + V +
Sbjct: 864 NTNPEIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTVQVIK 923
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCE-EDVARHFSMSEL 661
+S SIE+ M++ K L + E ED A M+EL
Sbjct: 924 LISKDSIEDCMLRVGQEKLKLEQDMTTDEGEDGAITEQMAEL 965
Score = 46 (21.3 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 41 GSVDNEDEPNSKLPMTKEEMSEHEN 65
G D++D+P K + + + SE E+
Sbjct: 136 GRSDDDDQPKKKRKIQRSDSSESED 160
Score = 37 (18.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 26 PVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEE 59
P KK K + D+EDE + + K+E
Sbjct: 144 PKKKRKIQRSDSSESEDEDSEDEESEEPSREKQE 177
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 502 (181.8 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 137/424 (32%), Positives = 229/424 (54%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ-TYQALMGLKAKRRVLLSGTPI 322
+L+ +YE S+L K++ ++ DEGHR+KN +S+ ++ + + R++L+GTP+
Sbjct: 571 VLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPL 630
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR-G-QDSCASDAERTKANERLEQLIG 380
QN+L E ++L++FV I +A+ F + TP G Q+ E T R +L
Sbjct: 631 QNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIR--RLHK 688
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGEN-TKL 439
++ L+RR + K LP K E+V+ K++ LQ++LY ++K +A+ G E TK
Sbjct: 689 VLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALF-VGAGTEGATKG 747
Query: 440 GMTALSS-ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAK 498
G+ L++ I L+K+CNHP V D++ E +N P S + LL ++ K
Sbjct: 748 GIKGLNNKIMQLRKICNHP-FVFDEV-------EGVVN--P-----SRGNSDLLFRVAGK 792
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVE 558
+LD +L K + ++++ TQ +D+ E +++ KY+RLDGS ++R +++
Sbjct: 793 FELLDRVLPKFK-ASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLN 851
Query: 559 TFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
FN ++ F F+LS++AGG GLNL A+ +++FD DWNP D QA R R GQK
Sbjct: 852 AFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVR 911
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE-DVARHFSMSE--LRSLFQLEENTISD 674
+ R ++T S+EE +++R K + V+ + D E LR L + E N D
Sbjct: 912 ILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNR--D 969
Query: 675 THDK 678
DK
Sbjct: 970 DDDK 973
Score = 333 (122.3 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
Identities = 105/341 (30%), Positives = 179/341 (52%)
Query: 130 KDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCIT 189
K+KI + ++ L+ +Q G+++M G I+ADEMGLGKT+Q I+
Sbjct: 455 KEKIDKQPSI--LVGGTLKEYQLRGLEWMVSLYNN----HLNG-ILADEMGLGKTIQSIS 507
Query: 190 LMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKL 249
L+ T L + K I +++ P S + NW E KW + + G N+
Sbjct: 508 LI-TYLYE---VKKDIGPFLVIVPLSTITNWTLEFEKWAPS-LNTIIYKG-----TPNQR 557
Query: 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQ-TYQALMG 308
+S +Q R +L+ +YE S+L K++ ++ DEGHR+KN +S+ ++
Sbjct: 558 HS-LQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHY 616
Query: 309 LKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILR-G-QDSCASDA 366
+ + R++L+GTP+QN+L E ++L++FV I +A+ F + TP G Q+
Sbjct: 617 YRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTE 676
Query: 367 ERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDA 426
E T R +L ++ L+RR + K LP K E+V+ K++ LQ++LY ++K +A
Sbjct: 677 EETLLIIR--RLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNA 734
Query: 427 VRRTMKGGEN-TKLGMTALSS-ITSLKKLCNHPDLVMDKIQ 465
+ G E TK G+ L++ I L+K+CNHP V D+++
Sbjct: 735 LF-VGAGTEGATKGGIKGLNNKIMQLRKICNHP-FVFDEVE 773
Score = 39 (18.8 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 702 DLSCWHHVTEKRWLVDPILKHC 723
D + V EK +D ILK+C
Sbjct: 1286 DYPDYFKVIEKPMAIDIILKNC 1307
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 283 (104.7 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 81/269 (30%), Positives = 138/269 (51%)
Query: 450 LKKLCNHPDLVMDKIQTGADGFENAMNIL----PTGYAASYKSGKLLI-----ELSAKLM 500
L+KL NH +++ + + E +L P + Y++ +I E K
Sbjct: 568 LQKLSNHLAILIPQSTDSFEKQEKDKEMLEIAVPDEWERLYRTRDSIINYADAEYCGKWK 627
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
VL +L DK+++ S+ + L + + L Y LDGSMT + RAKVV+ F
Sbjct: 628 VLRKLLKWWH-GNGDKVLVFSHSVRLLKMLQMLFNHTSYNVSYLDGSMTYETRAKVVDEF 686
Query: 561 NKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYR 620
N +F+F++S++AGG GLN+ AN++V+ DP+WNP++D QA R +R GQ + V+R
Sbjct: 687 NSDPRQFVFLISTRAGGVGLNITSANKVVIVDPNWNPSHDLQAQDRAYRIGQTRNVEVFR 746
Query: 621 FLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS-MSE----------LRSLFQLEE 669
+S G+IEE + RQ +K+ ++ + + R+F + E L+++F+ +
Sbjct: 747 LISAGTIEEIVYARQIYKQQQANIGYNASSE-RRYFKGVQEKKDQKGEIFGLQNIFEYQN 805
Query: 670 NTI--SDTHDKIKCSRCVNGIQVKPPPLE 696
+ I D +K + G+QV LE
Sbjct: 806 DNIVLRDIVNKTNIAESKAGVQVMDIELE 834
Score = 271 (100.5 bits), Expect = 3.8e-44, Sum P(2) = 3.8e-44
Identities = 81/305 (26%), Positives = 150/305 (49%)
Query: 138 VVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLL-- 195
V+ ++ LRP+Q EG F+++ + G I+ D+MGLGKT+Q I +
Sbjct: 236 VIPAPIAQWLRPYQVEGAAFLHQLFVYQK-----GGILGDDMGLGKTVQVIAFLTAAYGK 290
Query: 196 --------RQGPLAKPLID----KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKA 243
R + + D + +I+ P +L++NW +E+++W A G +K
Sbjct: 291 TGDERDDKRMRKMRRSEGDLWYPRTLIICPGTLIENWKSEMSRWGWWHFDAY--QGSNKD 348
Query: 244 EIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTY 303
+ + S GR V IL+ +Y T+ + ++ + V+ DE H +K S+T
Sbjct: 349 LVLHAAKS-----GR--VE-ILITTYSTYLKNRDAVNMVDWDCVIADECHAIKERSSETT 400
Query: 304 QALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCA 363
+A+ + A R+ L+GT IQN E ++L+++ N G +G ++ P+ GQ A
Sbjct: 401 KAMNDINALCRIGLTGTAIQNRYEELWTLLNWTNPGRMGPVTTWKSHVSEPLKIGQSHDA 460
Query: 364 SDAERTKANERLEQLI-GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI 422
+ + +A ++L+ ++ + +RR L++ LP K ++VV +TD Q + Y L+
Sbjct: 461 TVQQLRRARVTAKKLVENLLPQFFLRRMKTLIADQLPKKIDRVVFCPLTDTQAQAYERLL 520
Query: 423 KSDAV 427
SD +
Sbjct: 521 DSDII 525
Score = 46 (21.3 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 27/102 (26%), Positives = 45/102 (44%)
Query: 592 DPDW--NPANDDQAM----ARVWRDGQKKPCFVYRFLSTGSIEEKMMQR-----QAHKKA 640
D W NP +DD+AM AR+ + + F +R ST + +Q
Sbjct: 842 DGSWSRNPDDDDEAMSQLAARIRGETDDEVIFPHRQQSTTPSKHDPIQAILAGAGVEYTH 901
Query: 641 LSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHDKI 679
L++ VV EE ++R ++E SL L+ D+ D++
Sbjct: 902 LNNEVVGSSKVEEQLSRQAQLAEDDSLANLQ--VFCDSQDEV 941
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 489 (177.2 bits), Expect = 4.9e-44, P = 4.9e-44
Identities = 126/387 (32%), Positives = 209/387 (54%)
Query: 287 VLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQE 346
V+ DEGH+++N + A + R++LSG+P+QN+L E +SL F+ G LGT
Sbjct: 13 VILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPV 72
Query: 347 FRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVV 406
F +Q+ PI G S AS + A + L +N L+RR +K++ +
Sbjct: 73 FMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRR----------MKSDVKM 122
Query: 407 CIKMTDLQKE-LYTNLIKSD--AVRRTMKGGENTKL--G-MTALSSITSLKKLCNHPDLV 460
+ + D ++ L+ L + + E ++ G M S + +L+K+CNHPDL
Sbjct: 123 SLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLF 182
Query: 461 MDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
+G G +N LP + G + S K++V++++L + +++L
Sbjct: 183 -----SG--GPKNLKG-LPDDELEEDQFGYW--KRSGKMIVVESLLKIWHKQ-GQRVLLF 231
Query: 521 SNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGL 580
S Q LD+ E + + Y Y+++DG+ TI R ++ +N+ ++ F+F+L+++ GG G+
Sbjct: 232 SQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGV 291
Query: 581 NLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKA 640
NL GANR+V++DPDWNP+ D QA R WR GQKK VYR L+ G+IEEK+ RQ K+
Sbjct: 292 NLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQF 351
Query: 641 LSSCVVDCEEDVARHFSMSELRSLFQL 667
L++ V+ + R F ++L LF L
Sbjct: 352 LTNRVLK-DPKQRRFFKSNDLYELFTL 377
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 301 (111.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 62/162 (38%), Positives = 101/162 (62%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
Y +G L+ + K+++LD +L +K D ++++ S T+ LD+ E RGY+Y R+D
Sbjct: 484 YTTGDHLVTNAGKMVLLDKLLPKLK-DRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRID 542
Query: 546 GSMTIKKRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G+ +R +E +NK +E F+F+LS++AGG G+NL A+ ++++D DWNP D QA
Sbjct: 543 GNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQ 602
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQKK V+RF + +IE K+++R K AL + V+
Sbjct: 603 DRAHRIGQKKEVQVFRFCTENAIEAKVIERAYKKLALDALVI 644
Score = 251 (93.4 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 82/294 (27%), Positives = 149/294 (50%)
Query: 147 LRPHQREGVKFMYECVTGVRI-EDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
LR +Q G+ ++ +R+ E+ I+ADEMGLGKTLQ I+L+ L + P
Sbjct: 194 LRDYQLAGLNWL------IRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGP-- 245
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
++VAP S + NW NEI ++ + A+ G + + + G+ I
Sbjct: 246 --HMVVAPKSTLGNWMNEIRRFCPV-LRAVKFLGNPEER--RHIREELLVAGKFD---IC 297
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
V S+E + L + ++ DE HR+KN S + + R+L++GTP+QN+
Sbjct: 298 VTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNN 357
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L++F+ + +A+ F + ++ + G++ D + E ++QL ++
Sbjct: 358 LHELWALLNFLLPEVFSSAETFDEWFQ---ISGEN----DQQ-----EVVQQLHKVLRPF 405
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKL 439
L+RR + + K LP K E ++ + M+ +QK+ Y L++ D + GGE +L
Sbjct: 406 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD-LEVVNGGGERKRL 458
Score = 113 (44.8 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 29/87 (33%), Positives = 48/87 (55%)
Query: 373 ERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMK 432
E ++QL ++ L+RR + + K LP K E ++ + M+ +QK+ Y L++ D +
Sbjct: 393 EVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKD-LEVVNG 451
Query: 433 GGENTKLGMTALSSITSLKKLCNHPDL 459
GGE +L L+ L+K CNHP L
Sbjct: 452 GGERKRL----LNIAMQLRKCCNHPYL 474
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 299 (110.3 bits), Expect = 8.2e-44, Sum P(3) = 8.2e-44
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN + L +
Sbjct: 744 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGIETLQS----------- 787
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 788 LIRSSGKLILLDKLLTRLR-DRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 846
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 847 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 906
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 907 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 950
Score = 256 (95.2 bits), Expect = 8.2e-44, Sum P(3) = 8.2e-44
Identities = 73/245 (29%), Positives = 121/245 (49%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I+ + L Q L P + +V P S + +W E W +
Sbjct: 508 ILADEMGLGKTIQTISFLSYLFHQHQLYGPFL----VVVPLSTLTSWQREFEVW-APEIN 562
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
+ G + + ++ + +R L+ +YE +VL + DE H
Sbjct: 563 VVVYIGDLMSRNMIREYEWIHSQSKRLKFNALITTYEILLKDKAVLGSISWAFLGVDEAH 622
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF I+ EF + +E
Sbjct: 623 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF----IMPEKFEFWEDFEE 678
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
+G+++ + L ++ L+RR + K LP K EQ++ ++M+ L
Sbjct: 679 DHGKGREN------------GYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSAL 726
Query: 414 QKELY 418
QK+ Y
Sbjct: 727 QKQYY 731
Score = 56 (24.8 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 393 LLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRR-TMKGGENTKL 439
L K LPV+T++ K + + L+K D ++ MK GE KL
Sbjct: 1296 LSDKILPVETDKKPQGKQLQTRVDYLLKLLKKDLEKKENMKDGEEGKL 1343
Score = 51 (23.0 bits), Expect = 8.2e-44, Sum P(3) = 8.2e-44
Identities = 24/108 (22%), Positives = 39/108 (36%)
Query: 8 QLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENLI 67
Q+S +D +T P + +R+ + D E + + + MT E EHE+
Sbjct: 206 QVSSEDDDDDEDGET--PKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGADEHEDN- 262
Query: 68 RQILAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLY 115
+ + K + + G ST G A DP V Y
Sbjct: 263 SETIEKVLDIRLGKKGATGASTTVYATEANGNPSADFDPEKDEGEVHY 310
Score = 40 (19.1 bits), Expect = 9.5e-17, Sum P(3) = 9.5e-17
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW D + + ++ G
Sbjct: 1261 FDVDWGVEEDSRLLVGIYEHG 1281
Score = 39 (18.8 bits), Expect = 1.5e-42, Sum P(3) = 1.5e-42
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHENL 66
PP +++ K+ ++ + S D++D+ + + P + +N+
Sbjct: 194 PPKLQRGKKR---KRQVSSEDDDDDEDGETPKRQTRRRAAKNV 233
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 288 (106.4 bits), Expect = 8.2e-44, Sum P(2) = 8.2e-44
Identities = 61/161 (37%), Positives = 99/161 (61%)
Query: 489 GKL--LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
G+L L++ S KL++LD +L +K ++++ S LD+ + +LR + RLDG
Sbjct: 701 GRLQQLLKSSGKLILLDKLLCRLK-DKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDG 759
Query: 547 SMTIKKRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
SM R + ++ +N S +F F+LS++AGG G+NL A+ +++FD DWNP ND QAM+
Sbjct: 760 SMRADLRKQALDHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMS 819
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
R R GQ K +YR ++ GS+EE++++R K L V+
Sbjct: 820 RAHRIGQTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVI 860
Score = 267 (99.0 bits), Expect = 8.2e-44, Sum P(2) = 8.2e-44
Identities = 89/323 (27%), Positives = 149/323 (46%)
Query: 147 LRPHQREGVKFM-YECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLI 205
LR +Q EG+ +M Y G I+ADEMGLGKT+Q I+L+ +L + LA P +
Sbjct: 405 LRDYQLEGLNWMVYAWCKG------NSSILADEMGLGKTIQSISLLASLFHRYDLAGPYL 458
Query: 206 DKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+V P S + W E +W + + ++ + F+ + +N IL
Sbjct: 459 ----VVVPLSTMAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAIL 514
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+YE + L + +L DE HRLKN ES Y++L + ++L++GTP+QN
Sbjct: 515 T-TYEILLKDKAFLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNS 573
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E ++L+HF+ +EF + +G + +++LE
Sbjct: 574 LKELWALLHFIMPEKFDCWEEFETAHNESNHKGISAL---------HKKLEPF------- 617
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD--AVRRTMKGGENTKLGMTA 443
L+RR + K LP KTEQ++ + MT QK+ Y ++ + + + +KG N + +
Sbjct: 618 LLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVM 677
Query: 444 -LSSITSLKKLCNHPDLVMDKIQ 465
L + L D + D Q
Sbjct: 678 ELKKCCNHASLTRQYDHIYDDAQ 700
Score = 44 (20.5 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
+D DW+ +D + VW+ G
Sbjct: 1152 WDVDWSRPDDSALLLGVWKYG 1172
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 293 (108.2 bits), Expect = 8.7e-44, Sum P(2) = 8.7e-44
Identities = 65/194 (33%), Positives = 117/194 (60%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
L++ S K++VLD +L K ++++ S +++ LDL E R Y+Y RLDGS +
Sbjct: 430 LVDNSGKMVVLDKLLMKFK-EQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHE 488
Query: 552 KRAKVVETFNKT-SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R+ +E +N S +FIFML+++AGG G+NL A+ ++++D DWNP +D QAM R R
Sbjct: 489 DRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRI 548
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV------DCEEDVARHFSMSELR-- 662
GQKK V+R ++ +++E+++++ K L + V+ + ++ + + +S +R
Sbjct: 549 GQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISMIRHG 608
Query: 663 --SLFQLEENTISD 674
+F +++TISD
Sbjct: 609 AEQVFAAKDSTISD 622
Score = 257 (95.5 bits), Expect = 8.7e-44, Sum P(2) = 8.7e-44
Identities = 79/294 (26%), Positives = 143/294 (48%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKTLQ I+++ + A P +++ P S ++NW NE KW +
Sbjct: 154 ILADEMGLGKTLQTISMIGYMKHYKNKASP----HLVIVPKSTLQNWANEFKKWCPS-IN 208
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
A+ + G A N ++ + +YE + L K ++ DE H
Sbjct: 209 AVVLIGDEAAR-----NQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAH 263
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
R+KN +S+ + + L ++ R+L++GTP+QN+L E ++L++F+ I ++ +F +
Sbjct: 264 RIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSN 323
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
+ G T +RL + ++ L+RR + + K L K E V + ++ +
Sbjct: 324 DAMSGN---------TDLVQRLHK---VLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKM 371
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTG 467
Q+E YT ++ D + G+ K + ++ + L+K NHP L D + G
Sbjct: 372 QREWYTKVLMKD-IDIINGAGKVEKARL--MNILMHLRKCVNHPYL-FDGAEPG 421
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 297 (109.6 bits), Expect = 8.8e-44, Sum P(3) = 8.8e-44
Identities = 61/155 (39%), Positives = 92/155 (59%)
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI + KL VLD +L +K ++++ S T+ +DL E R ++Y+RLDGS I
Sbjct: 1151 LITDAGKLFVLDNLLTRLK-ANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKIS 1209
Query: 552 KRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDG 611
R +V F ++ F+F+LS++AGG G+NL A+ ++ +D DWNP D QAM R R G
Sbjct: 1210 ARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1269
Query: 612 QKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
Q K VYR + G+IEE+++QR K + V+
Sbjct: 1270 QTKQVTVYRLICKGTIEERILQRAREKSEIQRMVI 1304
Score = 261 (96.9 bits), Expect = 8.8e-44, Sum P(3) = 8.8e-44
Identities = 81/296 (27%), Positives = 147/296 (49%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I + + + P + +++P+S + NW E+++++
Sbjct: 557 ILADEMGLGKTVQSIAFLCHIAEHYGVWGPFL----VISPASTLHNWQQEMSRFVPD-FK 611
Query: 234 ALPIDGGSKAEIDNKLNSFMQT---YGRRPVNPILVISYETFRSHASVLHKNEVGLVLCD 290
+P GS AE L F + R +++ SY+ S ++ + ++ D
Sbjct: 612 VVPY-WGSPAE-RKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYFNRIKWQYMVLD 669
Query: 291 EGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQ 350
E +K+ SQ ++ L+G + R+LLSGTPIQN + E ++L+HF+ + + EF +
Sbjct: 670 EAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPTLFDSHDEFNEW 729
Query: 351 YETPILRGQDSCASDAERTKANER-LEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIK 409
+ I +S A + +T +E+ + +L I+ ++RR + L K E +V
Sbjct: 730 FSKDI----ESHAEN--KTGIDEKQISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCP 783
Query: 410 MTDLQKELYTNL---IKSDAVRRTMKGGENTKLGMTA---LSSITSLKKLCNHPDL 459
+T QK LY L I+ + + G T +A ++ + +K+CNHP+L
Sbjct: 784 LTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHPEL 839
Score = 47 (21.6 bits), Expect = 8.8e-44, Sum P(3) = 8.8e-44
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 PPPVKKEKRSCTSRKPLGSVDNEDEPNSKL 53
P P K+ +R R +GS ++ + P S+L
Sbjct: 209 PKPPKQRRRGRKKRDNMGSPESGEVPPSEL 238
Score = 44 (20.5 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 123 HDLLKIDKDKIQVHVVVDPVLSNILRPHQRE 153
+DLL D + + D + +LR H RE
Sbjct: 116 YDLLLSDTESDDPTITEDEYVQQLLREHVRE 146
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 302 (111.4 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN +L +
Sbjct: 724 KGTRGSTSGF--LNIVMELKKCCNHCHLIKPPEENER---ENGQEVLLS----------- 767
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 768 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 826
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 827 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 886
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 887 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 930
Score = 257 (95.5 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 466 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 519
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 520 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 575
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 576 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 635
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 636 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 679
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 680 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 711
Score = 47 (21.6 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 21 KTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
+T P P VKK+ K RK S D+EDE
Sbjct: 163 RTVPKPRVKKQPKTQRGKRKKQDSSDDEDE 192
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 284 (105.0 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 83/256 (32%), Positives = 136/256 (53%)
Query: 172 GCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGR 231
G I+AD+MGLGKTLQ ++L + ++ A K ++V P S++ W +EI++W G
Sbjct: 10 GGILADDMGLGKTLQALSL-FQYVKDNERAD---SKFLVVCPLSVLNTWMSEISRWTTG- 64
Query: 232 VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
+ + GGS+ E +N F Q G P N I+V +YET S K V+ DE
Sbjct: 65 LRPMAYHGGSE-ERENLRTCFRQQ-GAEPWN-IVVTTYETLCSDLWFFQKTLWAHVVLDE 121
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGIL--GTAQEFRK 349
GHR+KN S+ Q + L+++ R++L+GTPIQNDL E +S++H++ + TA+ F
Sbjct: 122 GHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSILHWLYPDVFVPATAKLFEN 181
Query: 350 QYETPILRGQ-DSCASDAERTKANERLEQLIGIVNRCLIRRTS--ALLSKYLPVKTEQVV 406
+ + G+ DS + + + +V ++RRT + + LP K E V
Sbjct: 182 AFS--LTDGKFDSIFLS--------HITRFLKVV---MLRRTKCDSQIGLDLPPKKETVF 228
Query: 407 CIKMTDLQKELYTNLI 422
+ +T+LQ Y ++
Sbjct: 229 SVPLTELQLGWYRTIL 244
Score = 259 (96.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 60/189 (31%), Positives = 101/189 (53%)
Query: 477 ILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536
+L Y G+ +++ S K +VL M+ + K+++ S + QTLDL E L ++
Sbjct: 311 LLADALPKEYNIGQHIVDASCKFIVLQKMIRQYVGLENKKVIIFSGFDQTLDLCEDLLEM 370
Query: 537 R----GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFD 592
+KY RLDGS + R V F +F+LS++AGG GLNL+ ++ ++ D
Sbjct: 371 EKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFLLSTRAGGEGLNLVSSSIVIFLD 430
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV-DCEED 651
DWNP QA +RV R GQ +P ++R + G++E++M +R K L+ V+ + +
Sbjct: 431 DDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKGTVEDQMRRRMDKKAYLADKVMGEFGNN 490
Query: 652 VARHFSMSE 660
+ H + E
Sbjct: 491 ITHHTDLEE 499
Score = 40 (19.1 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 40 LGSVDNEDEPNSKLPMT 56
LGS++ E ++ +PMT
Sbjct: 253 LGSIEQEKSQSNVVPMT 269
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 301 (111.0 bits), Expect = 9.7e-44, Sum P(3) = 9.7e-44
Identities = 75/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN IL +
Sbjct: 731 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEILLS----------- 774
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 775 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 833
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 834 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 893
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 894 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 937
Score = 258 (95.9 bits), Expect = 9.7e-44, Sum P(3) = 9.7e-44
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 472 LRDYQLEGLNWLAHSWCN----RSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 526
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 527 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 582
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 583 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 642
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 643 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 686
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 687 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 718
Score = 46 (21.3 bits), Expect = 9.7e-44, Sum P(3) = 9.7e-44
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 6 PSQLSKRSPEDSPGIKTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
P Q ++ P +T P P VKK+ K RK S D++DE
Sbjct: 174 PEQKKVKARRPVPR-RTVPKPRVKKQPKTQRGKRKKQDSSDDDDE 217
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 283 (104.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 72/216 (33%), Positives = 115/216 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 733 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 776
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 777 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 835
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 836 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRH 895
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
G +YR ++ GS+EE +++R K L V+
Sbjct: 896 GYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 931
Score = 272 (100.8 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 496 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 551
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 552 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 609
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 610 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 669
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 670 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 712
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 713 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 763
Score = 37 (18.1 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1243 FDIDWGKEDDSNLLIGIYEYG 1263
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 283 (104.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 72/216 (33%), Positives = 115/216 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 733 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 776
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 777 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 835
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 836 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRH 895
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
G +YR ++ GS+EE +++R K L V+
Sbjct: 896 GYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 931
Score = 272 (100.8 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 496 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 551
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 552 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 609
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 610 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 669
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 670 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 712
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 713 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 763
Score = 37 (18.1 bits), Expect = 9.3e-18, Sum P(2) = 9.3e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1243 FDIDWGKEDDSNLLIGIYEYG 1263
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 283 (104.7 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 72/216 (33%), Positives = 115/216 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + + G L+ + LKK CNH L+ + F N L +
Sbjct: 734 KGSKGSTSGF--LNIMMELKKCCNHCYLIKPPDN---NEFYNKQEAL-----------QH 777
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ K R + + RLDGS+ +
Sbjct: 778 LIRSSGKLILLDKLLIRLR-ERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGE 836
Query: 552 KRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 837 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRH 896
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
G +YR ++ GS+EE +++R K L V+
Sbjct: 897 GYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 932
Score = 272 (100.8 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
Identities = 87/291 (29%), Positives = 144/291 (49%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRV 232
CI+ADEMGLGKT+Q I+ + L + L P + +V P S + +W EI W
Sbjct: 497 CILADEMGLGKTIQTISFLNYLFHEHQLYGPFL----LVVPLSTLTSWQREIQTWASQMN 552
Query: 233 AALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDE 291
A + + D S+ I + + +M +R IL+ +YE + L + DE
Sbjct: 553 AVVYLGDINSRNMI--RTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDE 610
Query: 292 GHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQY 351
HRLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF+ + ++F +++
Sbjct: 611 AHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEH 670
Query: 352 ETPILRGQD-SCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKM 410
+G++ AS ++ LE L+RR + K LP K EQ++ ++M
Sbjct: 671 G----KGREYGYAS------LHKELEPF-------LLRRVKKDVEKSLPAKVEQILRMEM 713
Query: 411 TDLQKELYTNLIKSD--AVRRTMKGGENTKLG-MTALSSITSLKKLCNHPD 458
+ LQK+ Y ++ + A+ + KG + L M L + L PD
Sbjct: 714 SALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPD 764
Score = 37 (18.1 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW +D + ++ G
Sbjct: 1244 FDIDWGKEDDSNLLIGIYEYG 1264
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 301 (111.0 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 75/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN IL +
Sbjct: 744 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEILLS----------- 787
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 788 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 846
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 847 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 906
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 907 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 950
Score = 257 (95.5 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 486 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 539
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 540 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 595
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 596 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 655
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 656 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 699
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 700 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 731
Score = 46 (21.3 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 6 PSQLSKRSPEDSPGIKTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
P Q ++ P +T P P VKK+ K RK S D++DE
Sbjct: 169 PEQKKVKARRPVPR-RTVPKPRVKKQPKTQRGKRKKQDSSDDDDE 212
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 300 (110.7 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN +L +
Sbjct: 742 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEVLLS----------- 785
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 786 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 948
Score = 256 (95.2 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 484 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 537
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 538 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 593
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 594 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 653
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 654 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 697
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 698 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 729
Score = 43 (20.2 bits), Expect = 1.8e-43, Sum P(3) = 1.8e-43
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 KTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
+T P P VKK+ K RK S D++DE
Sbjct: 184 RTVPKPRVKKQPKTQRGKRKRQDSSDDDDE 213
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 295 (108.9 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 73/224 (32%), Positives = 121/224 (54%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + ++ E +L +
Sbjct: 749 KGTRGSTSGF--LNIVMELKKCCNHCYLI--RAPEDSER-ETGQEVLQS----------- 792
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 793 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 851
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 852 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 911
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 912 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 955
Score = 258 (95.9 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 80/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 491 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 544
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W V + G + + ++ + +R L+
Sbjct: 545 ---IVVPLSTLTSWQREFEIW-APEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 600
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 601 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 660
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 661 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 704
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 705 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 736
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 289 (106.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 75/214 (35%), Positives = 120/214 (56%)
Query: 437 TKLG--MTALSSIT-SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLI 493
TK G +L++I L+K+C HP ++ +G E P + A+ ++ K L+
Sbjct: 547 TKKGGAQISLNNIMMELRKVCCHPYML--------EGVE------PVIHDAN-EAFKQLL 591
Query: 494 ELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKR 553
E KL +LD M+ +K ++++ + + LDL E + ++Y R+DG + +R
Sbjct: 592 ESCGKLQLLDKMMVKLK-EQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAER 650
Query: 554 AKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ 612
++ FN K SN+F F+LS++AGG G+NL A+ ++++D DWNP D QAMAR R GQ
Sbjct: 651 QIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 710
Query: 613 KKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
+YR ++ G+IEE+MMQ K L VV
Sbjct: 711 TNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVV 744
Score = 261 (96.9 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
Identities = 87/314 (27%), Positives = 150/314 (47%)
Query: 143 LSNILRPHQREGVKFM-YECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
L +L P+Q EG+ F+ + + I+ADEMGLGKT+Q I L+ +L +
Sbjct: 269 LKGLLHPYQLEGLNFLRFSWSKQTHV------ILADEMGLGKTIQSIALLASLFEEN--- 319
Query: 202 KPLIDKAIIVAPSSL------VKNWCNE--ITKWLGGRVAALPID------GGSKAEIDN 247
LI +I S+L W + + + G A I + +I
Sbjct: 320 --LIPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKK 377
Query: 248 KLNSFMQTYGR--RPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQA 305
K + + + + R +L+ SYE ++VL + ++ DEGHRLKN +S+ + +
Sbjct: 378 KKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSS 437
Query: 306 LMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASD 365
L + R+LL+GTP+QN+L E F L+HF++ G G+ +EF+++++ D
Sbjct: 438 LTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK------------D 485
Query: 366 AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD 425
+ + RL +++ L+RR + K +P K E ++ + ++ LQKE Y + +
Sbjct: 486 INQEEQISRLHKMLA---PHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRN 542
Query: 426 AVRRTMKGGENTKL 439
T KGG L
Sbjct: 543 YQVLTKKGGAQISL 556
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 305 (112.4 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 78/242 (32%), Positives = 129/242 (53%)
Query: 414 QKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFEN 473
Q++ + I + + KG + G L+ + LKK CNH L I+ DG +
Sbjct: 729 QQKQFYKWILTRNFKALSKGTRGSSSGF--LNIVMELKKCCNHAFL----IKQPEDGEND 782
Query: 474 AMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERL 533
A P + S L+ KL++LD +L +K +++++ S + LD+
Sbjct: 783 A----PQEHLQS------LVRGGGKLVLLDKLLTRLK-DRGNRVLIFSQMVRMLDILADY 831
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFD 592
++ Y++ RLDGS+ + R + ++ FN + S +F F+LS++AGG G+NL A+ +V+FD
Sbjct: 832 LSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFD 891
Query: 593 PDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDV 652
DWNP ND QA AR R GQKK +YR ++ G++EE +++R K L V+ +
Sbjct: 892 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVIQRMDTT 951
Query: 653 AR 654
R
Sbjct: 952 GR 953
Score = 247 (92.0 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 81/273 (29%), Positives = 130/273 (47%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q +GV ++ + R I+ADEMGLGKT+Q I+ + L Q L P I
Sbjct: 489 LRDYQLDGVNWLAH--SWCRCNSV---ILADEMGLGKTIQTISFLSYLFHQHQLYGPFI- 542
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPI-DGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+V P S + +W E W + + D S+ I + QT R N +L
Sbjct: 543 ---VVVPLSTLTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTK-RIKFNALL 598
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQND 325
+YE VL + DE HRLKN +S Y+ L+ ++ R+L++GTP+QN
Sbjct: 599 T-TYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNS 657
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRC 385
L E +SL+HF+ + ++F ++ +G+D+ + L ++
Sbjct: 658 LKELWSLLHFLMSDKFESWEDFEDEHG----KGRDN------------GYQSLHKVLEPF 701
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
L+RR + K LP K EQ++ + M+ QK+ Y
Sbjct: 702 LLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFY 734
Score = 42 (19.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 591 FDPDWNPANDDQAMARVWRDG 611
FD DW+ +D Q + ++ G
Sbjct: 1260 FDVDWDIHDDTQLLLGIYEHG 1280
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 301 (111.0 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 75/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN IL +
Sbjct: 742 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEILLS----------- 785
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 786 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 948
Score = 256 (95.2 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 74/245 (30%), Positives = 121/245 (49%)
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I+ + L Q L P + IV P S + +W E W +
Sbjct: 506 ILADEMGLGKTIQTISFLSYLFHQHQLYGPFL----IVVPLSTLTSWQREFEIW-APEIN 560
Query: 234 ALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGH 293
+ G + + ++ + +R L+ +YE +VL + DE H
Sbjct: 561 VVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAH 620
Query: 294 RLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYET 353
RLKN +S Y+ L+ K+ R+L++GTP+QN L E +SL+HF I+ EF + +E
Sbjct: 621 RLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF----IMPEKFEFWEDFEE 676
Query: 354 PILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDL 413
+G+++ + L ++ L+RR + K LP K EQ++ ++M+ L
Sbjct: 677 DHGKGREN------------GYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSAL 724
Query: 414 QKELY 418
QK+ Y
Sbjct: 725 QKQYY 729
Score = 45 (20.9 bits), Expect = 2.6e-43, Sum P(3) = 2.6e-43
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 6 PSQLSKRSPEDSPGIKTFPPP-VKKEKRSCTSRKPLGSVDNEDEPNSKLPMTKEEMSEHE 64
P Q ++ P +T P P VKK+ ++ ++ +ED+ + + P + +
Sbjct: 170 PEQKKVKARRPVPR-RTVPKPRVKKQPKTQRGKRKKQDSSDEDDDDDEAPKRQTRRRAAK 228
Query: 65 NL 66
N+
Sbjct: 229 NV 230
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 281 (104.0 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 107/367 (29%), Positives = 170/367 (46%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LRP+Q +GV ++ +C ++ GCI+ DEMGLGKT Q I L L A L D
Sbjct: 48 LRPYQLQGVNWLAQCF---HCQN--GCILGDEMGLGKTCQTIALFIYL------AGRLND 96
Query: 207 KA--IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPI 264
+ +I+ P S++ NW E+ ++ G ++ + G K +K Q + +
Sbjct: 97 EGPFLILCPLSVLSNWKEEMERFAPG-LSCVTY-AGDK----DKRACLQQDLKQESRFHV 150
Query: 265 LVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQN 324
L+ +YE AS L +++ DE HRLKN S ++ L +LL+GTPIQN
Sbjct: 151 LLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQN 210
Query: 325 DLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNR 384
L E +SL+ FV + ++Q E + R QD K +E +L ++
Sbjct: 211 SLQELYSLLSFVEPDLFS-----KEQVEDFVQRYQDI-------EKESESASELYKLLQP 258
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTAL 444
L+RR A ++ LP KTE V+ M+ LQK+ Y ++ D + + KL L
Sbjct: 259 FLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAKKVKL-QNVL 317
Query: 445 SSITSLKKLCNHPDLV----MDKIQTGADGFENA--MNILPTGYAASYKSGKLLIELSAK 498
S L+K +HP L + + G E + +++L A Y G ++ S
Sbjct: 318 SQ---LRKCVDHPYLFDGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQM 374
Query: 499 LMVLDTM 505
+LD +
Sbjct: 375 TQMLDIL 381
Score = 263 (97.6 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 60/162 (37%), Positives = 96/162 (59%)
Query: 486 YKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLD 545
++ G LIE S KL +LD +LA + + +++L S TQ LD+ + RGY Y R+D
Sbjct: 338 FEIGDHLIEASGKLHLLDKLLAFL-YSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVD 396
Query: 546 GSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
GS+ ++R ++ F + F F LS++AGG G+NL A+ ++ FD D+NP ND QA A
Sbjct: 397 GSVRGEERHLAIKNFGQQPI-FTF-LSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAA 454
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
R R GQ K V R + ++EE + ++ A K L++ +++
Sbjct: 455 RAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTIIE 496
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 300 (110.7 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN +L +
Sbjct: 711 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEVLLS----------- 754
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 755 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 813
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 814 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 873
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 874 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 917
Score = 256 (95.2 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 453 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 506
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 507 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 562
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 563 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 622
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 623 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 666
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 667 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 698
Score = 43 (20.2 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 KTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
+T P P VKK+ K RK S D++DE
Sbjct: 168 RTVPKPRVKKQPKTQRGKRKRQDSSDDDDE 197
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 486 (176.1 bits), Expect = 4.9e-43, P = 4.9e-43
Identities = 141/488 (28%), Positives = 237/488 (48%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E+ KW + + G S + N +L+ +
Sbjct: 779 LIIVPLSTLSNWVYELDKWAPS-IVKIAYKGTPSMR-----RSLVPQLRSGKFN-VLITT 831
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 832 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLP 891
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 892 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRPFL 948
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM----T 442
+RR + LP K E V+ M+ +QK LY ++ + + T G E K G T
Sbjct: 949 LRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHM-QGKGILLT-DGSEKDKKGKGGAKT 1006
Query: 443 ALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVL 502
+++I LKK+CNHP + I+ + F + P G SG L S K +L
Sbjct: 1007 LMNTIMQLKKICNHP-YMFQHIE---ESFAEHLGF-PNGII----SGPDLYRASGKFELL 1057
Query: 503 DTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK 562
D +L +K T+ +++L T + + E R + Y+RLDG+ + RA +++ FN+
Sbjct: 1058 DRILPKLK-ATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNE 1116
Query: 563 TSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRF 621
++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V R
Sbjct: 1117 EGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1176
Query: 622 LSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHDK 678
+ S+EEK++ +K + V+ ++ + H + L+++ + EE + + D+
Sbjct: 1177 CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEE--DE 1234
Query: 679 IKCSRCVN 686
+ +N
Sbjct: 1235 VPDDETLN 1242
Score = 319 (117.4 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 110/381 (28%), Positives = 181/381 (47%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 721 LINGTLKQYQIQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIGLITYLMELKRLN 775
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E+ KW + + G S +
Sbjct: 776 GPYL----IIVPLSTLSNWVYELDKWAPS-IVKIAYKGTPSMR-----RSLVPQLRSGKF 825
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 826 N-VLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 884
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 885 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK-- 942
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKL 439
++ L+RR + LP K E V+ M+ +QK LY ++ + + T G E K
Sbjct: 943 -VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHM-QGKGILLT-DGSEKDKK 999
Query: 440 GM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKLLI 493
G T +++I LKK+CNHP + ++ A+ GF N + P Y AS K +LL
Sbjct: 1000 GKGGAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKF-ELLD 1058
Query: 494 ELSAKLMVLD-TMLAVIKMTT 513
+ KL + +L +MT+
Sbjct: 1059 RILPKLKATNHRVLLFCQMTS 1079
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 300 (110.7 bits), Expect = 5.4e-43, Sum P(3) = 5.4e-43
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN +L +
Sbjct: 745 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEVLLS----------- 788
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 789 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 847
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 848 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 907
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 908 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 951
Score = 256 (95.2 bits), Expect = 5.4e-43, Sum P(3) = 5.4e-43
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 487 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 540
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 541 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 596
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 597 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 656
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 657 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 700
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 701 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 732
Score = 43 (20.2 bits), Expect = 5.4e-43, Sum P(3) = 5.4e-43
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 KTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
+T P P VKK+ K RK S D++DE
Sbjct: 184 RTVPKPRVKKQPKTQRGKRKRQDSSDDDDE 213
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 300 (110.7 bits), Expect = 5.5e-43, Sum P(3) = 5.5e-43
Identities = 74/224 (33%), Positives = 120/224 (53%)
Query: 432 KGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
KG + G L+ + LKK CNH L+ + EN +L +
Sbjct: 755 KGTRGSTSGF--LNIVMELKKCCNHCYLIKPPEENER---ENGQEVLLS----------- 798
Query: 492 LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIK 551
LI S KL++LD +L ++ +++++ S + LD+ ++ Y + RLDGS+ +
Sbjct: 799 LIRSSGKLILLDKLLTRLR-ERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 857
Query: 552 KRAKVVETFNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRD 610
R + ++ FN +E F F+LS++AGG G+NL A+ +V+FD DWNP ND QA AR R
Sbjct: 858 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 917
Query: 611 GQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVAR 654
GQKK +YR ++ G++EE++++R K L V+ + R
Sbjct: 918 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGR 961
Score = 256 (95.2 bits), Expect = 5.5e-43, Sum P(3) = 5.5e-43
Identities = 79/272 (29%), Positives = 131/272 (48%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q EG+ ++ + I+ADEMGLGKT+Q I+ + L Q L P +
Sbjct: 497 LRDYQLEGLNWLAHSWC-----KSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFL- 550
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
IV P S + +W E W + + G + + ++ + +R L+
Sbjct: 551 ---IVVPLSTLTSWQREFEIW-APEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALI 606
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
+YE +VL + DE HRLKN +S Y+ L+ K+ R+L++GTP+QN L
Sbjct: 607 TTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSL 666
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E +SL+HF I+ EF + +E +G+++ + L ++ L
Sbjct: 667 KELWSLLHF----IMPEKFEFWEDFEEDHGKGREN------------GYQSLHKVLEPFL 710
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELY 418
+RR + K LP K EQ++ ++M+ LQK+ Y
Sbjct: 711 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 742
Score = 43 (20.2 bits), Expect = 5.5e-43, Sum P(3) = 5.5e-43
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 KTFPPP-VKKE-KRSCTSRKPLGSVDNEDE 48
+T P P VKK+ K RK S D++DE
Sbjct: 197 RTVPKPRVKKQPKTQRGKRKRQDSSDDDDE 226
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 484 (175.4 bits), Expect = 7.6e-43, P = 7.6e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 834
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 951
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 952 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 1009
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 1010 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1060
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1061 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1119
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1120 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1179
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1180 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1237
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1238 DEVPDDETLN 1247
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 726 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 780
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 781 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 829
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 830 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 887
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 888 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 947
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 948 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 1002
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1061
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1062 LDRILPKLRATNHRVLLFCQMTS 1084
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 484 (175.4 bits), Expect = 8.1e-43, P = 8.1e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 811
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 928
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 986
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 987 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1037
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1038 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1096
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1097 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1156
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1157 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1214
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1215 DEVPDDETLN 1224
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 703 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 758 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 806
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 807 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 864
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 865 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 924
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 925 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 979
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1038
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1039 LDRILPKLRATNHRVLLFCQMTS 1061
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 484 (175.4 bits), Expect = 8.1e-43, P = 8.1e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 811
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 928
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 986
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 987 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1037
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1038 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1096
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1097 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1156
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1157 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1214
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1215 DEVPDDETLN 1224
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 703 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 758 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 806
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 807 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 864
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 865 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 924
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 925 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 979
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1038
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1039 LDRILPKLRATNHRVLLFCQMTS 1061
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 484 (175.4 bits), Expect = 8.2e-43, P = 8.2e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 761 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 811
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 812 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 871
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 872 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 928
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 929 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 986
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 987 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1037
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1038 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1096
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1097 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1156
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1157 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1214
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1215 DEVPDDETLN 1224
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 703 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 757
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 758 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 806
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 807 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 864
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 865 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 924
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 925 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 979
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1038
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1039 LDRILPKLRATNHRVLLFCQMTS 1061
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 484 (175.4 bits), Expect = 8.3e-43, P = 8.3e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 782 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 832
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 833 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 893 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 949
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 950 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 1007
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 1008 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1058
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1059 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1117
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1118 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1177
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1178 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1235
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1236 DEVPDDETLN 1245
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 724 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 778
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 779 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 827
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 828 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 885
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 886 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 945
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 946 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 1000
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1059
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1060 LDRILPKLRATNHRVLLFCQMTS 1082
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 484 (175.4 bits), Expect = 8.4e-43, P = 8.4e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 777 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 827
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 828 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 888 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 944
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 945 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 1002
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 1003 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1053
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1054 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1112
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1113 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1172
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1173 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1230
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1231 DEVPDDETLN 1240
Score = 310 (114.2 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 719 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 773
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 774 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 822
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 823 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 880
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 881 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 940
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 941 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 995
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1054
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1055 LDRILPKLRATNHRVLLFCQMTS 1077
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 484 (175.4 bits), Expect = 8.5e-43, P = 8.5e-43
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 834
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 835 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 894
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 895 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 951
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 952 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 1009
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 1010 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1060
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1061 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1119
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1120 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1179
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1180 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1237
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1238 DEVPDDETLN 1247
Score = 310 (114.2 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 726 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 780
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 781 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 829
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 830 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 887
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 888 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 947
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 948 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 1002
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1061
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1062 LDRILPKLRATNHRVLLFCQMTS 1084
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 484 (175.4 bits), Expect = 8.5e-43, P = 8.5e-43
Identities = 141/488 (28%), Positives = 243/488 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVIS 268
+I+ P S + NW E KW +A+ I + L +++ G+ N +L +
Sbjct: 784 LIIVPLSTLSNWTYEFDKWAP---SAVKISYKGTPAMRRSLVPQLRS-GK--FNALLT-T 836
Query: 269 YETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQNDLL 327
YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN L
Sbjct: 837 YEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLP 896
Query: 328 EYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNRCL 386
E ++L++F+ I + F + + P + G+ ++ E RL + ++ L
Sbjct: 897 ELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRPFL 953
Query: 387 IRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM----T 442
+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G T
Sbjct: 954 LRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGAKT 1011
Query: 443 ALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVL 502
+++I L+K+CNHP + I+ + F + GY+ +G L S K +L
Sbjct: 1012 LMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFELL 1062
Query: 503 DTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK 562
D +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ FN+
Sbjct: 1063 DRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNE 1121
Query: 563 TSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRF 621
++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V R
Sbjct: 1122 PGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1181
Query: 622 LSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTHDK 678
+ S+EEK++ +K + V+ ++ + H + L+++ + EE ++ D+
Sbjct: 1182 CTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEEDE 1239
Query: 679 IKCSRCVN 686
+ +N
Sbjct: 1240 VPDDETLN 1247
Score = 303 (111.7 bits), Expect = 6.6e-23, P = 6.6e-23
Identities = 109/381 (28%), Positives = 184/381 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMG GKT+Q I L+ L+ L
Sbjct: 726 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGPGKTIQTIALITYLMEHKGLN 780
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPV 261
P + I+ P S + NW E KW +A+ I + L +++ G+
Sbjct: 781 GPYL----IIVPLSTLSNWTYEFDKWAP---SAVKISYKGTPAMRRSLVPQLRS-GK--F 830
Query: 262 NPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGT 320
N +L +YE +L K ++ DEGHR+KN + Q L A RR+LL+GT
Sbjct: 831 NALLT-TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGT 889
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLI 379
P+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 890 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK-- 947
Query: 380 GIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKL 439
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K
Sbjct: 948 -VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKK 1004
Query: 440 GM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKLLI 493
G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +LL
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-ELLD 1063
Query: 494 ELSAKLMVLD-TMLAVIKMTT 513
+ KL + +L +MT+
Sbjct: 1064 RILPKLRATNHRVLLFCQMTS 1084
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 303 (111.7 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 83/287 (28%), Positives = 154/287 (53%)
Query: 369 TKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLI-KSDAV 427
T + E + +L ++ +RRT A + +LP + +V + M+ LQK+LY +++ K+ +
Sbjct: 801 TLSKENIPELHELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQL 860
Query: 428 RRTM--KGGENTKLGMTA---LSSIT-SLKKLCNHPDLVMDKIQTGADGFENAMNILPTG 481
+ + + E+ L T L++I L+K HP + I+ D E A
Sbjct: 861 IKAIFQRNEEDQPLKQTERHNLNNILMQLRKCLCHPFIFSKAIEERTDDPEVA------- 913
Query: 482 YAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKY 541
+++ L++ + KL +L+ ML ++ ++++ S + + LD+ E G +
Sbjct: 914 ----HRN---LVDAAGKLQLLELMLPKLQ-ARGHRVLVFSQFLENLDVMEDFLDGLGLPH 965
Query: 542 VRLDGSMTIKKRAKVVETFN-KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
RLDG MT ++ ++++ +N + S F F+LS+++GG G+NL A+ +++ DPD+NP D
Sbjct: 966 RRLDGRMTSLEKQRMIDDYNAENSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQD 1025
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVD 647
QA++R R GQK V++ + GS EEK+MQ K L ++D
Sbjct: 1026 MQALSRAHRIGQKNKVLVFQLMIRGSAEEKIMQIGRKKMVLDHVLID 1072
Score = 241 (89.9 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 79/245 (32%), Positives = 131/245 (53%)
Query: 116 TPPQLSAHD-LLKIDKDKIQVHVVVDPVLSN-ILRPHQREGVKFMYECVTGVRIEDAYGC 173
TP Q+S L + K K + +++ + +QR+G+ ++Y + ++A
Sbjct: 573 TPNQISLQKHLANVRKQKFKSREAQPRIMTGGEIMDYQRDGLNWLY--FKWFKQQNA--- 627
Query: 174 IMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVA 233
I+ADEMGLGKT+Q I L+ TL+ Q P + IV P+S NW E+ W+ +
Sbjct: 628 ILADEMGLGKTIQVIGLLATLV-QDHKCWPFL----IVVPNSTCPNWRKELKTWVPS-LR 681
Query: 234 ALPIDGGSKA-EIDNKLNSFMQTYGRRPVN-PILVISYETF--RSHASVLHKNE-VGLVL 288
A+ G S A ++ + F++ G + +++ SYET S VL + GL++
Sbjct: 682 AVTYYGSSLARKMAQEHEMFIR--GDPDLRCHVVITSYETMVDDSCRKVLSRIPWAGLIV 739
Query: 289 CDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFR 348
DEG RLK+ +SQ Y+ L +K +VL++GTP+QN+ E F+L+ F +Q A+E
Sbjct: 740 -DEGQRLKSDKSQIYEGLSKMKFPFKVLMTGTPLQNNTKELFNLLQFCDQS--KNAEELE 796
Query: 349 KQYET 353
++Y T
Sbjct: 797 EKYGT 801
Score = 41 (19.5 bits), Expect = 8.7e-22, Sum P(2) = 8.7e-22
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 45 NEDEPNSKL-PMTKEEMSEHENLIRQILAKPFKVPILNY 82
N +E K ++KE + E LIR + K +L +
Sbjct: 791 NAEELEEKYGTLSKENIPELHELIRPFFLRRTKAQVLTF 829
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 483 (175.1 bits), Expect = 1.0e-42, P = 1.0e-42
Identities = 141/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 751 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 801
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 802 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 861
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 862 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 918
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 919 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 976
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 977 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1027
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1028 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1086
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +++FD DWNP D QA R R GQ+ V
Sbjct: 1087 NEPGSQYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1146
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1147 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1204
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1205 DEVPDDETLN 1214
Score = 310 (114.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 693 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 747
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 748 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 796
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 797 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 854
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 855 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 914
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 915 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 969
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 970 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1028
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1029 LDRILPKLRATNHRVLLFCQMTS 1051
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 491 (177.9 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 165/564 (29%), Positives = 271/564 (48%)
Query: 124 DLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGK 183
D K+++ K+ V + + LRP+Q+EGV ++ + + +G I+ D+MGLGK
Sbjct: 1301 DSRKVEEFKLPVAIKAE------LRPYQQEGVNWL----AFLNRYNLHG-ILCDDMGLGK 1349
Query: 184 TLQ--CITLMWTLLRQGPLAK---PLIDK--AIIVAPSSLVKNWCNEITKWLGGRVAALP 236
TLQ CI +R AK P K ++I+ P SL +W E+ ++
Sbjct: 1350 TLQTICIVASDHHMRAEDFAKTQRPESRKVPSLIICPPSLSGHWQQEVKQYAPFLNCVAY 1409
Query: 237 IDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLK 296
+ G AE S +Q G I+V SY+ R+ VL + DEGH +K
Sbjct: 1410 V--GPPAE-----RSKLQ--GSLADADIVVTSYDICRNDNDVLRPISWNYCVLDEGHLIK 1460
Query: 297 NCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPIL 356
N +++ A+ + + R++LSGTPIQN++LE +SL F+ G LGT + F ++ PI
Sbjct: 1461 NPKAKVTMAVKRINSNHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIA 1520
Query: 357 RGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKE 416
+ S +S + A +E L V L+RR + LP K Q ++LQK+
Sbjct: 1521 TSRFSKSSKEQEAGALA-IEALHKQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQKK 1579
Query: 417 LYTNLIKSDAVRRTMKGGENTKLGMTAL-SSITSLKKLCNHPDLVMD---KIQTGADGF- 471
L+ + K + K G + K + ++ +++LCN P LV+ K +
Sbjct: 1580 LFEDFTKKEQKALQEKMGSSEKADKEHIFQALQYMRRLCNSPALVVKEGHKQYNEVQQYL 1639
Query: 472 -ENAMNILPTGYAASYKSGK-LLIELSAKLMVLDTML-AVIKMTTDDKIVLVSNYTQTLD 528
E + +A + K LL++ + + L A + + ++ + LD
Sbjct: 1640 QEKKSYLRDVSHAPKLSALKDLLLDCGIGVEPTEGNLGAGASYVSPHRALVFCQMKEMLD 1699
Query: 529 LF--ERLSKLR-GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGA 585
+ E L KL +++RLDG++ +R +V FN + + +L++ GG GLNL GA
Sbjct: 1700 IVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLLTTSVGGLGLNLTGA 1759
Query: 586 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCV 645
+ ++ + DWNP D QAM R R GQKK VYR ++ G++EEK++ Q K ++S V
Sbjct: 1760 DTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKILNLQRFKIDVASTV 1819
Query: 646 VDCEEDVARHFSMSELRSLFQLEE 669
V+ + +L LF L E
Sbjct: 1820 VNQQNAGLNTMDTDQLLDLFNLGE 1843
Score = 40 (19.1 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 141 PVLSNILRPHQREG-VKFMYECV 162
P ++N L H R+G V+ +Y +
Sbjct: 1203 PTINNALDVHHRQGAVECIYHLI 1225
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 305 (112.4 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
Identities = 92/328 (28%), Positives = 163/328 (49%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L+ +Q G++++ T + G I+ADEMGLGKT+Q I + L + + +P +
Sbjct: 624 LKEYQVTGLEWLISLYT----RNLNG-ILADEMGLGKTVQTIAFISFLYERMNVREPFL- 677
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+VAP S + NW +E +W ++ + G D + + +T R +++
Sbjct: 678 ---VVAPLSTISNWVSEFARW-SPKLHVIVYKGKQ----DERRET-ARTIPRNAFC-VVI 727
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDL 326
S+E L + ++ DEGHR+KN S+ L ++ R+LL+GTP+QNDL
Sbjct: 728 TSFEYIIKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDL 787
Query: 327 LEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSC-ASDAERTKANERLEQLIGIVNR 384
E ++L++F+ I +A F+ + P +G++ ++ E RL Q++
Sbjct: 788 GELWALLNFLLPTIFNSADTFQNWFNAPFQAKGKNLINVNEEESLIIINRLHQVLRFF-- 845
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDA--VRRTMKGGENTKLGMT 442
L+RR + + LP K E+V+ M+ LQ +Y +L++ + K G + +L M
Sbjct: 846 -LLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGRLKMK 904
Query: 443 ALSSITS-LKKLCNHPDLVMDKIQTGAD 469
++I L+K+CNHP L D+ D
Sbjct: 905 GFNNIVKQLQKICNHPYLFKDEWDINED 932
Score = 249 (92.7 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
Identities = 56/157 (35%), Positives = 92/157 (58%)
Query: 492 LIELSAKLMVLDTMLAVIKM-TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTI 550
LI S K +D +L KM + ++++ + T+ ++L E L+ + ++RLDGS
Sbjct: 933 LIRTSGKFDTMDQILT--KMHASKHRVLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKP 990
Query: 551 KKRAKVVETFNKTSNEF-IFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWR 609
++RA +V +N+ + F IF+LS+ AGG G+NL A+ +++FD DWNP D QA R R
Sbjct: 991 EERAHLVVEWNRPDSPFWIFVLSTHAGGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHR 1050
Query: 610 DGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
GQ V+R +S SIEEK++ R K + + ++
Sbjct: 1051 IGQTNSVSVFRLISANSIEEKILGRATDKLEIDAKII 1087
Score = 56 (24.8 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 368 RTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
+TK NERLE L+G T +LLS + ++ + +L++EL N + +
Sbjct: 508 KTK-NERLEMLLG--------ETDSLLSSIHQLMEKEQTEKRARELEEELKQNEEQLNDH 558
Query: 428 RRTMKGGENTKLGMTALSSITS 449
T NT T S+ TS
Sbjct: 559 NGTNTNNNNTTTTTTTTSTTTS 580
Score = 42 (19.8 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 44 DNEDEPNSKLP-MTKEEMSEHENLIRQI--LAKP 74
+N + N+++ +TKEE E E I+++ L KP
Sbjct: 264 NNNNNNNNEIETLTKEEELEKEKEIQRLRDLQKP 297
Score = 42 (19.8 bits), Expect = 2.0e-16, Sum P(5) = 2.0e-16
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 222 NEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGR---RPVNPILVISYET 271
N+++ + +V I SK DN N ++++ R RP++ I Y+T
Sbjct: 373 NDVSLEMEDQVLIRSIQNNSKGYDDNDYNLYVRSIPRLINRPIDQTSSI-YDT 424
Score = 38 (18.4 bits), Expect = 3.4e-42, Sum P(4) = 3.4e-42
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISD 674
M++++ + L++ V D +ED+A + + S + ++D
Sbjct: 1168 MIEKELPEWVLATPVTDKDEDIAGKKRSTAIASANSFVHDNLTD 1211
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 475 (172.3 bits), Expect = 6.2e-42, P = 6.2e-42
Identities = 123/381 (32%), Positives = 206/381 (54%)
Query: 264 ILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL-KAKRRVLLSGTPI 322
+L+ +YE +L K ++ DEGHR+KN +S+ Q L K K R++L+GTP+
Sbjct: 601 VLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPL 660
Query: 323 QNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERL--EQLIG 380
QN+L E ++L++FV GI + + F + TP E T+ L +L
Sbjct: 661 QNNLPELWALLNFVLPGIFNSVKSFDDWFNTPF--ANTGAQEKIELTEEESLLVIRRLHK 718
Query: 381 IVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLG 440
++ L+RR + K LP K E+V+ ++ LQ LY ++K +A+ G K G
Sbjct: 719 VLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVG-GAKSG 777
Query: 441 MTALSS-ITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKL 499
+ L++ I L+K+CNHP V +++ E+ +N +S + L+ +S K
Sbjct: 778 IKGLNNKIMQLRKICNHP-FVFEEV-------ESVLN-------SSRLTNDLIWRVSGKF 822
Query: 500 MVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVET 559
+LD +L K + ++++ TQ +D+ E + + KY+RLDGS ++R +++
Sbjct: 823 ELLDRVLPKFKKS-GHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKV 881
Query: 560 FNKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFV 618
FN ++ F F+LS++AGG GLNL A+ +++FD DWNP D QA R R GQK +
Sbjct: 882 FNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRI 941
Query: 619 YRFLSTGSIEEKMMQRQAHKK 639
R ++ S+EE +++R AH+K
Sbjct: 942 LRLITNDSVEEVILER-AHQK 961
Score = 331 (121.6 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 124/460 (26%), Positives = 215/460 (46%)
Query: 20 IKTFPPPVKKE---KRSCTSRKPLGSV-DNEDEPNSKL-PMTKEEMSEH----ENLIRQI 70
I F +KE K T+++ L ++ N++E KL TK+ H N
Sbjct: 374 INNFHQTTEKEESKKLERTAKQRLQALRSNDEEAYLKLLDKTKDHRITHLLKQTNQFLDS 433
Query: 71 LAKPFKVPILNYTGGGYSTKALGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDK 130
L + + +GG ++G R G+ + + + + L + +++ K
Sbjct: 434 LTEKVRAQQEEASGG-----SMGTPRHGSPEVAVENKSDDKAELRE--KTDYYEVAHRIK 486
Query: 131 DKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITL 190
+KI + ++ L+ +Q +G+++M G I+ADEMGLGKT+Q I+L
Sbjct: 487 EKITEQPTI--LVGGKLKEYQMKGLEWMVSLYNN----HLNG-ILADEMGLGKTIQSISL 539
Query: 191 MWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLN 250
+ L+ K +K +I+ P S + NW E KW + + G + L
Sbjct: 540 VTYLIE-----KKHENKFLIIVPLSTITNWTLEFEKWAPS-IKVIVYKGSQQQR--RSLQ 591
Query: 251 SFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL- 309
++ YG V L+ +YE +L K ++ DEGHR+KN +S+ Q L
Sbjct: 592 PDIR-YGNFQV---LLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYY 647
Query: 310 KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369
K K R++L+GTP+QN+L E ++L++FV GI + + F + TP E T
Sbjct: 648 KTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPF--ANTGAQEKIELT 705
Query: 370 KANERL--EQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
+ L +L ++ L+RR + K LP K E+V+ ++ LQ LY ++K +A+
Sbjct: 706 EEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNAL 765
Query: 428 RRTMKGGENTKLGMTALSS-ITSLKKLCNHPDLVMDKIQT 466
G K G+ L++ I L+K+CNHP V +++++
Sbjct: 766 FVGADVG-GAKSGIKGLNNKIMQLRKICNHP-FVFEEVES 803
Score = 52 (23.4 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 487 KSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDG 546
KS K + ++L+ D + AV T+D +S++ + + + LSK+R K VR D
Sbjct: 1033 KSEK--VPYKSRLIEKDELPAVF---TED----ISHHFEKKE--KELSKMRDKKRVRYDD 1081
Query: 547 SMTIKKRAKVVETFNKTSNEFI 568
++ ++ K ++ N T E I
Sbjct: 1082 GLSEEQWLKAMDDDNDTVEEAI 1103
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 484 (175.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 142/490 (28%), Positives = 243/490 (49%)
Query: 209 IIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRRPVNPILV 266
+I+ P S + NW E KW V + G + + +L S G+ N +L+
Sbjct: 759 LIIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK--FN-VLL 809
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLSGTPIQND 325
+YE +L K ++ DEGHR+KN + Q L A RR+LL+GTP+QN
Sbjct: 810 TTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 869
Query: 326 LLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQLIGIVNR 384
L E ++L++F+ I + F + + P + G+ ++ E RL + ++
Sbjct: 870 LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK---VLRP 926
Query: 385 CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGM--- 441
L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E K G
Sbjct: 927 FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKDKKGKGGA 984
Query: 442 -TALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
T +++I L+K+CNHP + I+ + F + GY+ +G L S K
Sbjct: 985 KTLMNTIMQLRKICNHP-YMFQHIE---ESFAEHL-----GYSNGVINGAELYRASGKFE 1035
Query: 501 VLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+LD +L ++ T+ +++L T + + E R + Y+RLDG+ + RA +++ F
Sbjct: 1036 LLDRILPKLR-ATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKF 1094
Query: 561 NKTSNE-FIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
N+ ++ FIF+LS++AGG GLNL A+ +V+FD DWNP D QA R R GQ+ V
Sbjct: 1095 NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVL 1154
Query: 620 RFLSTGSIEEKMMQRQAHKKALSSCVVDC---EEDVARHFSMSELRSLFQLEENTISDTH 676
R + S+EEK++ +K + V+ ++ + H + L+++ + EE ++
Sbjct: 1155 RLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEE--NEEE 1212
Query: 677 DKIKCSRCVN 686
D++ +N
Sbjct: 1213 DEVPDDETLN 1222
Score = 310 (114.2 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 111/383 (28%), Positives = 185/383 (48%)
Query: 142 VLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLA 201
+++ L+ +Q +G+++M + G I+ADEMGLGKT+Q I L+ L+ L
Sbjct: 701 LINGTLKHYQLQGLEWMVSLYNN----NLNG-ILADEMGLGKTIQTIALITYLMEHKRLN 755
Query: 202 KPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDG--GSKAEIDNKLNSFMQTYGRR 259
P + I+ P S + NW E KW V + G + + +L S G+
Sbjct: 756 GPYL----IIVPLSTLSNWTYEFDKWAPS-VVKISYKGTPAMRRSLVPQLRS-----GK- 804
Query: 260 PVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQAL-MGLKAKRRVLLS 318
N +L+ +YE +L K ++ DEGHR+KN + Q L A RR+LL+
Sbjct: 805 -FN-VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLT 862
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI-LRGQDSCASDAERTKANERLEQ 377
GTP+QN L E ++L++F+ I + F + + P + G+ ++ E RL +
Sbjct: 863 GTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHK 922
Query: 378 LIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENT 437
++ L+RR + LP K E V+ M+ LQK LY ++ ++ + T G E
Sbjct: 923 ---VLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM-QAKGILLT-DGSEKD 977
Query: 438 KLGM----TALSSITSLKKLCNHPDLVMDKIQTGAD--GFENAMNILPTGYAASYKSGKL 491
K G T +++I L+K+CNHP + ++ A+ G+ N + Y AS K +L
Sbjct: 978 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKF-EL 1036
Query: 492 LIELSAKLMVLD-TMLAVIKMTT 513
L + KL + +L +MT+
Sbjct: 1037 LDRILPKLRATNHRVLLFCQMTS 1059
Score = 37 (18.1 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 8 QLSKRSPEDSPGIKTFPPP 26
QL+ + PG++ PPP
Sbjct: 202 QLAVQGKRTLPGMQQQPPP 220
WARNING: HSPs involving 320 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 755 736 0.00087 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 570
No. of states in DFA: 623 (66 KB)
Total size of DFA: 387 KB (2190 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 66.58u 0.10s 66.68t Elapsed: 00:00:03
Total cpu time: 66.67u 0.11s 66.78t Elapsed: 00:00:03
Start: Thu Aug 15 13:46:20 2013 End: Thu Aug 15 13:46:23 2013
WARNINGS ISSUED: 2