RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5647
(755 letters)
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 972 bits (2514), Expect = 0.0
Identities = 435/651 (66%), Positives = 527/651 (80%), Gaps = 8/651 (1%)
Query: 92 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQ 151
LG+RR G RKALHDP ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQ
Sbjct: 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQ 60
Query: 152 REGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211
REGVKF+++CVTG RIE++YGCIMADEMGLGKTLQCITL+WTLL+Q P KP IDK I+V
Sbjct: 61 REGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVV 120
Query: 212 APSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET 271
+PSSLV+NW NE+ KWLGGRV + IDGGSK EID+KL +F+ G R PIL+ISYET
Sbjct: 121 SPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET 180
Query: 272 FRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331
FR HA VLHK +VGLV+CDEGHRLKN ++QTY AL + A+RRVL+SGTPIQNDLLEYFS
Sbjct: 181 FRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240
Query: 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTS 391
LVHFVN GILGTAQEF+K++E PIL+G+D+ ASD +R ++L++LI IVNRCLIRRTS
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTS 300
Query: 392 ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLK 451
+LSKYLPVK EQVVC +T LQKELY +K +++ G K+ +++LSSITSLK
Sbjct: 301 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITSLK 357
Query: 452 KLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKM 511
KLCNHP L+ +K TG +GF+ A+++ P Y + + +LS K++VLD +LA+ +
Sbjct: 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQN----YSTKAVEPQLSGKMLVLDYILAMTRT 413
Query: 512 TTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK-TSNEFIFM 570
TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE FN +S EFIFM
Sbjct: 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 473
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEK 630
LSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IEEK
Sbjct: 474 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEK 533
Query: 631 MMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQV 690
++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG QV
Sbjct: 534 ILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQV 593
Query: 691 KPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEK 741
+PPP +SDCT DLS WHH +KR L DP+L+ W A VSFVF+Q S + ++
Sbjct: 594 RPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 644
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 364 bits (936), Expect = e-118
Identities = 139/546 (25%), Positives = 249/546 (45%), Gaps = 81/546 (14%)
Query: 134 QVHVVVDPVLSNILRPHQREGV---KFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITL 190
++ + LRP+Q +G +FM + G G +AD+MGLGKTLQ I +
Sbjct: 25 SFQLLEPYNIKANLRPYQIKGFSWMRFMNKL--GF------GICLADDMGLGKTLQTIAV 76
Query: 191 MWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAEIDNKL 249
++ L ++++ P S++KNW E++K+ R A
Sbjct: 77 FSDAKKENELT-----PSLVICPLSVLKNWEEELSKFAPHLRFAV--FHEDRSKIKLEDY 129
Query: 250 NSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL 309
+ I++ +Y L + E ++ DE +KN +++ ++A+ L
Sbjct: 130 D-------------IILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL 175
Query: 310 KAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369
K+K R+ L+GTPI+N + + +S++ F+N G+LG+ EF+ ++ TPI +G +
Sbjct: 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN--------- 226
Query: 370 KANERLEQLIGIVNRCLIRRTSALLS--KYLPVKTEQVVCIKMTDLQKELYTNLIKSDAV 427
E+L I++ ++RRT + LP K E V +T Q +Y +++ +
Sbjct: 227 ---MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVEN--L 281
Query: 428 RRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYK 487
+ K LS++ LK++ +HP L+ G + +
Sbjct: 282 FNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKG------------------GEQSVRR 323
Query: 488 SGKL--LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE-RLSKLRGYKYVRL 544
SGK+ +E+ ++ L DKI + + + + + K + L
Sbjct: 324 SGKMIRTMEI------IEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL 372
Query: 545 DGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
G ++ K+R ++ F + +LS KAGG G+NL ANR++ FD WNPA +DQA
Sbjct: 373 YGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQAT 432
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
RV+R GQ + V++ +S G++EEK+ Q A K++L ++ + S ELR +
Sbjct: 433 DRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKV 492
Query: 665 FQLEEN 670
+L
Sbjct: 493 IELSVG 498
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 352 bits (905), Expect = e-110
Identities = 146/509 (28%), Positives = 245/509 (48%), Gaps = 49/509 (9%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR Q G+ +M I+ADEMGLGKT+Q + + L+ P
Sbjct: 237 LRDFQLTGINWMAFL-----WSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGP--- 288
Query: 207 KAIIVAPSSLVKNWCNEITKWLGG-RVAALPIDGGSKAE----IDNKLNSFMQTYGRRPV 261
IIV P S + W + KW G++ + + + + G++ +
Sbjct: 289 -HIIVVPLSTMPAWLDTFEKWAPDLNCICYM---GNQKSRDTIREYEFYTNPRAKGKKTM 344
Query: 262 N-PILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGT 320
+L+ +YE + L + + DE HRLKN ES Y++L K R+L++GT
Sbjct: 345 KFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGT 404
Query: 321 PIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIG 380
P+QN++ E +LV+F+ G QE + D E+ + L + I
Sbjct: 405 PLQNNIKELAALVNFLMPGRFTIDQEIDFEN------------QDEEQEEYIHDLHRRI- 451
Query: 381 IVNR-CLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSD-AVRRTMKGGENTK 438
+ ++RR + K LP KTE+++ ++++D+Q E Y N++ + + G +
Sbjct: 452 ---QPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFS 508
Query: 439 LGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAK 498
L L+ + LKK NHP L A+ E + G + LI S K
Sbjct: 509 L----LNIMNELKKASNHPYLF-----DNAE--ERVLQKFGDGKMTRENVLRGLIMSSGK 557
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVE 558
+++LD +L +K ++++ S + LD+ ++G + RLDG++ +R ++
Sbjct: 558 MVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID 616
Query: 559 TFNK-TSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
FN SN+F+F+LS++AGG G+NL+ A+ +V+FD DWNP D QAMAR R GQK
Sbjct: 617 HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVM 676
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVV 646
VYR +S ++EE++++R K L ++
Sbjct: 677 VYRLVSKDTVEEEVLERARKKMILEYAII 705
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 318 bits (815), Expect = 8e-96
Identities = 90/537 (16%), Positives = 182/537 (33%), Gaps = 35/537 (6%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
L PHQ + A ++ADE+GLGKT++ ++ L G +
Sbjct: 154 LIPHQLNIAHDVGR-------RHAPRVLLADEVGLGKTIEAGMILHQQLLSG-----AAE 201
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
+ +I+ P +L W E+ + R A D AE + + T +++
Sbjct: 202 RVLIIVPETLQHQWLVEMLRRFNLRFALF--DDERYAEAQHDAYNPFDTE------QLVI 253
Query: 267 ISYETFRSH---ASVLHKNEVGLVLCDEGHRLKNCE---SQTYQALMGL--KAKRRVLLS 318
S + R L + E L++ DE H L E S+ YQA+ L +LL+
Sbjct: 254 CSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLT 313
Query: 319 GTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQL 378
TP Q + +F+ + ++ +F ++ + A +N+ L L
Sbjct: 314 ATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNML 373
Query: 379 IGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTK 438
++ I + + + + + ++ R +KG +
Sbjct: 374 GEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFR-NTRNGVKGFPKRE 432
Query: 439 LGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAK 498
L L T + ++ + A+ M Y +
Sbjct: 433 LHTIKLPLPTQYQTAIKVSGIMGARKS--AEDRARDMLYPERIYQEFEGDNATWWNFDPR 490
Query: 499 LMVLDTMLAVIKMTTDDKIVLVSNYTQTLD-LFERLSKLRGYKYVRLDGSMTIKKRAKVV 557
+ + ++ + K++++ T L + L + G + M+I +R +
Sbjct: 491 V---EWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF 617
F + +L S+ G G N A+ +VMFD +NP +Q + R+ R GQ
Sbjct: 548 AWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQ 607
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISD 674
++ + + +++ + + L ++ D
Sbjct: 608 IHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFD 664
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 209 bits (535), Expect = 1e-62
Identities = 72/303 (23%), Positives = 128/303 (42%), Gaps = 38/303 (12%)
Query: 371 ANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRT 430
+ + + ++ LP K E V +T Q +Y + + +
Sbjct: 2 GSSHHHHHH----SSGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEV--ENLFNN 55
Query: 431 MKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGK 490
+ K LS++ LK++ +HP L+ G + +SGK
Sbjct: 56 IDSVTGIKRKGMILSTLLKLKQIVDHPALLKG------------------GEQSVRRSGK 97
Query: 491 L--LIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFE-RLSKLRGYKYVRLDGS 547
+ +E+ ++ L DKI + + + + + K + L G
Sbjct: 98 MIRTMEI------IEEALD-----EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGE 146
Query: 548 MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARV 607
++ K+R ++ F + +LS KAGG G+NL ANR++ FD WNPA +DQA RV
Sbjct: 147 LSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRV 206
Query: 608 WRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQL 667
+R GQ + V++ +S G++EEK+ Q A K++L ++ + S ELR + +L
Sbjct: 207 YRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIEL 266
Query: 668 EEN 670
Sbjct: 267 SVG 269
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain,
chromatin regulator, coiled coil, nucleus, repressor,
transcription; 2.20A {Saccharomyces cerevisiae} PDB:
3hgq_A
Length = 328
Score = 193 bits (493), Expect = 6e-56
Identities = 40/299 (13%), Positives = 96/299 (32%), Gaps = 40/299 (13%)
Query: 398 LPVKTEQVVCIKMTDLQKELYTNLI--KSDAVRRTMKGGENTKLG--MTALSSITSLKKL 453
+ + M+ QKEL ++ + R + + + + + +
Sbjct: 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLV 79
Query: 454 CNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTT 513
HP L++D + + L E S K VL ++ +++
Sbjct: 80 ATHPYLLIDHYMPKSLITRD--------------VPAHLAENSGKFSVLRDLINLVQ-EY 124
Query: 514 DDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK---TSNEFIFM 570
+ + +V +T+DL E L R DG A + +S F
Sbjct: 125 ETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFT 184
Query: 571 LSSKAGGCGLNLIGANRLVMFDPDWNPANDD-QAMARVWRD--GQKKPCFVYRFLSTGSI 627
+++ + D + + D Q + + R+ G ++ + R ++ SI
Sbjct: 185 KYPIKSKARFDML-----ICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239
Query: 628 EEKMMQRQAHKKALS--------SCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDK 678
+ + S + +V + + +LR ++ + + + + +
Sbjct: 240 DHCRLFFGKKFDKNSREYLENVTAAMVILRDRL--GTLPPDLRPIYSQKLHYLVEWLEN 296
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 97.6 bits (242), Expect = 2e-21
Identities = 77/519 (14%), Positives = 175/519 (33%), Gaps = 61/519 (11%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
R +Q +Y ++ GLGKTL + + L +
Sbjct: 10 PRIYQEV----IYAKCKETNC------LIVLPTGLGKTLIAMMIAEYRLTKYG------G 53
Query: 207 KAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
K +++AP+ LV + + G K+ + + ++ + ++
Sbjct: 54 KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKS-PEERSKAWAR-------AKVI 105
Query: 266 VISYETFRS--HASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRR---VLLSGT 320
V + +T + A + +V L++ DE HR + + A + + + L+ +
Sbjct: 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165
Query: 321 PI--QNDLLEYFSLVHFVNQGILGTAQEFRKQY----ETPILRGQDSCASDAERTKANER 374
P ++E + + + + Y +R R E
Sbjct: 166 PGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREM 225
Query: 375 LEQLIGIVNRC-LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG 433
L + + L+ +S + K ++ Q++ +M +L L+ +
Sbjct: 226 LRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHA 285
Query: 434 GE--NTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKL 491
E T+ + I L + K + A+++L K
Sbjct: 286 IELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLL--------VQAKE 337
Query: 492 LIELSAKLMVLDTMLAV-IKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGS--- 547
+ K+ L ++ ++ + KI++ +NY +T G K R G
Sbjct: 338 IGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASK 397
Query: 548 -----MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQ 602
++ +++ +++ F EF ++++ G GL++ + +V ++P + Q
Sbjct: 398 ENDRGLSQREQKLILDEFA--RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQ 455
Query: 603 AMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKAL 641
R R P V ++ G+ +E K+ +
Sbjct: 456 RRGRTGR---HMPGRVIILMAKGTRDEAYYWSSRQKEKI 491
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 77.9 bits (192), Expect = 3e-15
Identities = 81/492 (16%), Positives = 165/492 (33%), Gaps = 126/492 (25%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q + ++ G ++ G GKT + + L
Sbjct: 94 LRDYQEKALERWLVDKRGC-------IVLP--TGSGKTHVAMAAINELST---------- 134
Query: 207 KAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+IV P+ +L + W + + V G K + P+
Sbjct: 135 PTLIVVPTLALAEQWKERLGIFGEEYVGE--FSGRIK-----------------ELKPLT 175
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL-KAKRRVLLSGTPIQN 324
V +Y++ +A L N L++ DE H L +++Y + + A R+ L+ T +
Sbjct: 176 VSTYDSAYVNAEKL-GNRFMLLIFDEVHHLP---AESYVQIAQMSIAPFRLGLTATFERE 231
Query: 325 DLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIG-IVN 383
D E L++++G V
Sbjct: 232 DGRH--------------------------------------------EILKEVVGGKVF 247
Query: 384 RCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTA 443
+L K+L T + + + + + ++ Y K
Sbjct: 248 ELFPD---SLAGKHLAKYTIKRIFVPLAEDERVEYEKREKV------------------- 285
Query: 444 LSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLD 503
+ + +KI + E A L A ++ ++ K+ L
Sbjct: 286 YKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL----RAWEEARRIAFNSKNKIRKLR 341
Query: 504 TMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKT 563
+L + DKI++ +T+ +L R+SK+ + + ++R +++E F
Sbjct: 342 EILERHR---KDKIII---FTRHNELVYRISKVFLIPAI--THRTSREEREEILEGFR-- 391
Query: 564 SNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ-KKPCFVYRFL 622
+ F ++SS+ G+++ AN V+ + Q + R+ R + KK +Y +
Sbjct: 392 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELI 451
Query: 623 STGSIEEKMMQR 634
S G+ E +R
Sbjct: 452 SRGTGEVNTARR 463
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 5e-12
Identities = 84/647 (12%), Positives = 186/647 (28%), Gaps = 242/647 (37%)
Query: 202 KPL------IDKAIIVAPSSLVKNWCN------EITKWLGGRVAALPIDG--GSKAEIDN 247
+PL ++ ++V P++ + + K L D + AE+
Sbjct: 7 RPLTLSHGSLEHVLLV-PTAS---FFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-- 60
Query: 248 KLNSFMQTYGRRPVNP--------ILVISYETFRSHASVLHKNEVGLVLCDEGH----RL 295
+ F+ Y V P +L + F + L N++ H +L
Sbjct: 61 -VGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDI--------HALAAKL 108
Query: 296 KNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPI 355
T L + ++ + Y + + F K+ + +
Sbjct: 109 LQENDTT------LVKTKELIKN----------YITARIMAKR-------PFDKKSNSAL 145
Query: 356 LRGQDSCASDAERTK----------ANERLEQLIGIVN------RCLIRRTSALLSKYLP 399
R A + ++ E+L + LI+ ++ LS+ +
Sbjct: 146 FR-----AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 400 VKTE-QVVCIKMTDLQKELY-------TNLIKSDAVRRTMKGGENTKLGMTALSS-ITSL 450
+ + V + ++ + L + + S + + +G+ L+ + +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI--SCPL-----IGVIQLAHYVVTA 253
Query: 451 KKLCNHPDLVMDKIQ-------------------TGADGFENAMNILP----TGYAASYK 487
K L P + ++ + F + + G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 488 SGKLLIELSAKLMVLDT----------MLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLR 537
+ S ++ D+ ML++ +T + + + ++K
Sbjct: 314 YPNTSLPPS---ILEDSLENNEGVPSPMLSISNLTQEQ-------------VQDYVNKTN 357
Query: 538 GYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGG-----CGLNL----IGANRL 588
+ L + + N N ++S G GLNL A
Sbjct: 358 SH----LPAGKQV-----EISLVNGAKN---LVVS----GPPQSLYGLNLTLRKAKA--- 398
Query: 589 VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQA--HKKALSSCVV 646
P+ DQ+ R+ ++K F RFL + H L
Sbjct: 399 --------PSGLDQS--RI-PFSERKLKFSNRFLPVA----------SPFHSHLLVPASD 437
Query: 647 DCEEDVARH---FSMSELRSLFQLEENTISDTHDKIKCSRCVNG--IQVKPPPLESDCTD 701
+D+ ++ F+ +++ + DT D G ++V + D
Sbjct: 438 LINKDLVKNNVSFNAKDIQI-------PVYDTFD---------GSDLRVLSGSISERIVD 481
Query: 702 DLSC----WHHVTEKR--WLVD--P---------ILKHCWGAGVSFV 731
+ W T+ + ++D P ++ G GV +
Sbjct: 482 CIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 53.5 bits (128), Expect = 3e-07
Identities = 53/321 (16%), Positives = 95/321 (29%), Gaps = 124/321 (38%)
Query: 300 SQTYQALMGLKAKRRVLLSGTPIQNDLLE---------Y-FSL------------VHFVN 337
SQ Q MG+ L + D+ Y FS+ +HF
Sbjct: 1626 SQ-EQG-MGMD-----LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 338 QGILGTAQEFRKQYETPILRGQDSCASDAERT--KANERLEQLIGIVNRCLIRRTS---- 391
+ + R+ Y I E+ + NE + L+ T
Sbjct: 1679 EK----GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 392 ALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKG---GENTKLGMTALSSIT 448
AL + + DL+ + LI +DA G GE AL+S+
Sbjct: 1735 ALT-------LMEKAAFE--DLKSK---GLIPADAT---FAGHSLGEYA-----ALASLA 1774
Query: 449 SLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDT---M 505
VM E+ + ++ + G + + + + M
Sbjct: 1775 D----------VMS--------IESLVEVV-------FYRGMTMQVAVPRDELGRSNYGM 1809
Query: 506 LAV------IKMTTD--DKIV---------LVS--NY----TQT--------LD-LFERL 533
+A+ + + +V LV NY Q LD + L
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL 1869
Query: 534 S--KLRGYKYVRLDGSMTIKK 552
+ KL+ + L S+++++
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEE 1890
Score = 41.2 bits (96), Expect = 0.001
Identities = 78/528 (14%), Positives = 136/528 (25%), Gaps = 200/528 (37%)
Query: 3 SLAPSQLSKRSPEDSPGIKTFPPP--------VKKEKRSCTSRKPLGSVDNEDEPNSKLP 54
S P LS S E P +E+ + +P +DEP +
Sbjct: 5 STRPLTLSHGSLEHV-----LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 55 MT------------KEEMSEHENLIRQILAKPFKVPILNYTGG-----------GYSTKA 91
+ ++ + + ++ L + F+ L G +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-FENCYL---EGNDIHALAAKLLQENDTT 115
Query: 92 LGVRRE------GARKALHDPT---APNALV----------------------------- 113
L +E AR P + +AL
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 114 LYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGC 173
LY + DL+K LS ++R + ++ G+ I +
Sbjct: 176 LYQTYHVLVGDLIK----------FSAETLSELIRTTLD--AEKVFT--QGLNILE---- 217
Query: 174 IMADEMGLGKTLQCITLMWTL-----------LRQGPLAKPLID-----------KAIIV 211
W L L P++ PLI K +
Sbjct: 218 ------------------W-LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 212 APSSLVKNWCNEITKWLGGRVAALPI-DGGSKAEIDNKLNSFM-----------QTYGRR 259
P L T G V A+ I + S + + + Y
Sbjct: 259 TPGELRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 260 PVNPILVISY----ETFRSH-ASV--LHKNEVGLVLCDEGH-RLKNCESQTYQAL-MGLK 310
+ P ++ E S S+ L + +V + + N + + + L
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQV------QDYVNKTNSHLPAGKQVEISLV 371
Query: 311 -AKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERT 369
+ +++SG P SL RK G D R
Sbjct: 372 NGAKNLVVSGPPQ--------SLYGLNLT--------LRKAKAPS---GLDQS-----RI 407
Query: 370 KANERLEQLIGIVNRCLIRRTSALL-SKYLPVKTEQVVCIKMTDLQKE 416
+ER + NR L ++ S L ++ + DL K
Sbjct: 408 PFSER---KLKFSNRFL--PVASPFHSHLLVPASDLI----NKDLVKN 446
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 63.5 bits (153), Expect = 2e-10
Identities = 78/610 (12%), Positives = 176/610 (28%), Gaps = 82/610 (13%)
Query: 116 TPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIM 175
P + + L + I V R +Q E + + ++
Sbjct: 220 AEPDDNLSENLGSAAEGIGKPPPVYETKK--ARSYQIELAQ---------PAINGKNALI 268
Query: 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCNEITKWLG---GR 231
G GKT I + + P + K + +A + + N
Sbjct: 269 CAPTGSGKTFVSILICEHHFQNMPAGRK--AKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 232 VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR---SHASVLHKNEVGLVL 288
V + + S ++ + I+V++ + ++ + L++
Sbjct: 327 VQGISGENFSNVSVEKVIEDSD----------IIVVTPQILVNSFEDGTLTSLSIFTLMI 376
Query: 289 CDEGHRLKNCESQTYQALMGLKAKRR----------VLLSGTPIQNDLLEYFSLVHFVNQ 338
DE H + Y LM +++ + L+ + + + +
Sbjct: 377 FDECHNTTG--NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS 434
Query: 339 GI-LGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSKY 397
Q E + + + R+ + L+ T AL+
Sbjct: 435 LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTI 494
Query: 398 LPVKTEQVVCIK-MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNH 456
V T K E + + + ++ E AL T + N
Sbjct: 495 YSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554
Query: 457 PDLVMD--KIQTGADGFENAMNILPTGYAASYKS----------------GKLLIELSAK 498
++ + +I + G + K + K
Sbjct: 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPK 614
Query: 499 LMVL-DTMLAVIKMTTDDKIVLVSNYTQT----LDLFERLSKLRGYKYVRLDGS------ 547
L L + + + +L + E L K L G
Sbjct: 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 674
Query: 548 --MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMA 605
MT+ + V++ F KTS + ++++ G++++ N +V+++ N Q
Sbjct: 675 TGMTLPSQKGVLDAF-KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRG 733
Query: 606 RVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLF 665
R G+ S + E + ++ ++ V ++ F+ ++ +L
Sbjct: 734 R----GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFA-KKIHNL- 787
Query: 666 QLEENTISDT 675
Q++E + D+
Sbjct: 788 QMKERVLRDS 797
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 4e-10
Identities = 98/711 (13%), Positives = 211/711 (29%), Gaps = 250/711 (35%)
Query: 123 HDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADE---- 178
H + + + Q +IL + ++C ++D I++ E
Sbjct: 4 HHHMDFETGEHQYQY------KDIL-SVFEDAFVDNFDCKD---VQDMPKSILSKEEIDH 53
Query: 179 -MGLGKTL-QCITLMWTLLRQGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALP 236
+ + + L WTLL + + ++ K + L N+ K+L +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFV---EEVLRINY-----KFLMSPIKTEQ 102
Query: 237 IDGGSKAEI----DNKLNSFMQTYGRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEG 292
+ ++L + Q + + V+ R
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----------RLQ---------------PY 137
Query: 293 HRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYE 352
+L+ AL+ L+ + V L+ G+LG+
Sbjct: 138 LKLRQ-------ALLELRPAKNV----------------LID----GVLGS--------- 161
Query: 353 TPILRGQDSCASDAERTKANERLEQLI--GI----VNRCLIRRTSALLSKYLPVKTEQVV 406
G+ A D + +++ + I + C +L
Sbjct: 162 -----GKTWVALDVCL---SYKVQCKMDFKIFWLNLKNC--NSPETVLEM---------- 201
Query: 407 CIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS-ITSLKKLCNHPD--LVMDK 463
LQK L + + R N KL + ++ + + L K + + LV+
Sbjct: 202 ------LQK-LLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 464 IQTG--ADGFENAMNILPT-------GYAASYKSGKLLIELSAKLMVLD---TMLA-VIK 510
+Q + F + IL T + ++ + + ++ + + D ++L +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 511 MTTDD---KIVLVSNYTQTLDLF-----ERLSKLRGYKYVRLDGSMTIKKRAKVVETF-- 560
D +++ + + L + + L+ +K+V D K ++E+
Sbjct: 313 CRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNWKHVNCD------KLTTIIESSLN 364
Query: 561 NKTSNEF--IFMLSSKAGGCGLNLIGANRLVMFDPDWN-PANDDQAMARVWRDGQKKPCF 617
E+ +F RL +F P + P ++ +W D
Sbjct: 365 VLEPAEYRKMFD----------------RLSVFPPSAHIPT---ILLSLIWFD------- 398
Query: 618 VYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARH-FSMSELRSLFQLEENTISDTH 676
S ++ + HK +L E+ S+ + +++ H
Sbjct: 399 -----VIKSDVMVVVN-KLHKYSL------VEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 677 DKI----KCSRCVNGIQVKPPPLESDCTDDLSCWH---HV-----TEK-----------R 713
I + + + PP L D H H+ E+ R
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL-----DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 714 WLVDPILKH---CWGAGVS-------FVFYQHSTKAEKSKVVTEEEEKEEE 754
+L + ++H W A S FY+ + + + K E
Sbjct: 502 FL-EQKIRHDSTAWNASGSILNTLQQLKFYK--------PYICDNDPKYER 543
Score = 51.0 bits (121), Expect = 1e-06
Identities = 55/416 (13%), Positives = 111/416 (26%), Gaps = 132/416 (31%)
Query: 42 SVDNEDEPNSKLPMTKEEMSEHENLIRQILAKPFKVPILNYTGGGYSTKALGVRREGARK 101
++ N + P + L M + L+ QI N+T + + +R +
Sbjct: 188 NLKNCNSPETVLEML-------QKLLYQI--------DPNWTSRSDHSSNIKLRIHSIQA 232
Query: 102 AL----HDPTAPNAL-VL---YTPPQLSAHDLL-KI-----DK---DKIQVHVVVDPVLS 144
L N L VL +A +L KI K D + L
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 145 NILRP-HQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGP---- 199
+ E + + + R +D + E+ + ++++ +R G
Sbjct: 293 HHSMTLTPDEVKSLLLKYL-DCRPQD-----LPREVLTTNPRR-LSIIAESIRDGLATWD 345
Query: 200 -LAKPLIDK------------------------AII-----VAPSSLVKNWCN------- 222
DK ++ + L W +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 223 EITKWLGGRVAALPIDGGSKAEIDNKLNSF----------MQTYGRRPVNPILVISYETF 272
+ L S E K ++ ++ ++ +V Y
Sbjct: 406 VVVNKLHKY---------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 273 RSHASVLHKNEVGLVLCDE------GHRLKNCE--------SQTYQALMGLKAKRRVLLS 318
++ +++ D+ GH LKN E + L+ K R
Sbjct: 457 KTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR--HD 510
Query: 319 GTP------IQNDLL------EYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSC 362
T I N L Y + ++ +F + E ++ + +
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 61.1 bits (147), Expect = 7e-10
Identities = 66/558 (11%), Positives = 176/558 (31%), Gaps = 79/558 (14%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVKNWCNEITKWLGG- 230
I+ G GKT + + L++ P + K + A + + +++
Sbjct: 22 TIICAPTGCGKTFVSLLICEHHLKKFPCGQK--GKVVFFANQIPVYEQQATVFSRYFERL 79
Query: 231 --RVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR---SHASVLHKNEVG 285
+A++ + + + I++++ + ++ ++ +
Sbjct: 80 GYNIASISGATSDSVSVQHIIEDND----------IIILTPQILVNNLNNGAIPSLSVFT 129
Query: 286 LVLCDEGHRLK-----NCESQTYQALMGLKAK----RRVLLSGTPIQNDLLEYFSLVHFV 336
L++ DE H N Y +++ + V L+ + D + +
Sbjct: 130 LMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHI 189
Query: 337 -------NQGILGTAQEFRKQYETPILRGQDSCASDAERTKA--NERLEQLIGIVNRCLI 387
+ ++ T ++ + E + + Q A RT + QL+ +
Sbjct: 190 CKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAK 249
Query: 388 RRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSI 447
+ L + E T ++ + K+ +V + E +++
Sbjct: 250 DVSEELGKLFQIQNREFG-----TQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYT 304
Query: 448 TSLKKL---------------CNHPDLVMDKIQTGADGFENAM--NILPTGYAASYKSGK 490
+ L+K N+ ++ A K +
Sbjct: 305 SHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSR 364
Query: 491 LLIELSAKLMVLDTMLAVIKMTTDDKIVLV-SNYTQTLD-LFERLSKLRGYKYVR----- 543
+ KL L +L + ++ +D L + + + +++
Sbjct: 365 DPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILT 424
Query: 544 ------LDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 597
MT+ + V+E F + S + ++++ G+++ N +++++ N
Sbjct: 425 GRGRTNRATGMTLPAQKCVLEAF-RASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483
Query: 598 ANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS 657
Q R G+ + + S+ + EK +K ++ ++ + F
Sbjct: 484 IKMIQTRGR----GRARDSKCFLLTSSADVIEKEKANMIKEKIMNESILRLQTWDEMKFG 539
Query: 658 MSELRSLFQLEENTISDT 675
+ R Q+ E + D+
Sbjct: 540 KTVHR--IQVNEKLLRDS 555
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 57.0 bits (138), Expect = 3e-09
Identities = 34/181 (18%), Positives = 63/181 (34%), Gaps = 44/181 (24%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q + ++ G + G GKT + + L
Sbjct: 94 LRDYQEKALERWLVDKRGCIV---LPT------GSGKTHVAMAAINELST---------- 134
Query: 207 KAIIVAPS-SLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPIL 265
+IV P+ +L + W + + V G E+ P+
Sbjct: 135 PTLIVVPTLALAEQWKERLGIFGEEYVGEF---SGRIKEL----------------KPLT 175
Query: 266 VISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGL-KAKRRVLLSGTPIQN 324
V +Y++ +A L N L++ DE H L +++Y + + A R+ L+ T +
Sbjct: 176 VSTYDSAYVNAEKL-GNRFMLLIFDEVHHLP---AESYVQIAQMSIAPFRLGLTATFERE 231
Query: 325 D 325
D
Sbjct: 232 D 232
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 58.5 bits (140), Expect = 5e-09
Identities = 76/601 (12%), Positives = 178/601 (29%), Gaps = 87/601 (14%)
Query: 144 SNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKP 203
R +Q E + G I+ G GKT + + L++ P +
Sbjct: 11 PFKPRNYQLELA---LPAMKGKNT------IICAPTGCGKTFVSLLICEHHLKKFPQGQK 61
Query: 204 LIDKAIIVAPS-SLVKNWCNEITKWLG---GRVAALPIDGGSKAEIDNKLNSFMQTYGRR 259
K + A + + + +K+ RV + ++ + +
Sbjct: 62 --GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENND------ 113
Query: 260 PVNPILVISYETFR---SHASVLHKNEVGLVLCDEGHRLKNC-------ESQTYQALMGL 309
I++++ + ++ + L++ DE H + Q L G
Sbjct: 114 ----IIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGS 169
Query: 310 KAKRRVLLSGTPIQN-----DLLEYFSLVHFV----NQGILGTAQEFRKQYE------TP 354
++ T E + + + ++ T + ++ E
Sbjct: 170 SGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 229
Query: 355 ILRGQDSCASD---AERTKANERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMT 411
R +S SD + E L + + L + ++ K EQ +
Sbjct: 230 FFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQK 289
Query: 412 DLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLVMDKIQTGAD-G 470
+ + + + + + I+ ++ + D + D G
Sbjct: 290 ACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAG 349
Query: 471 FENAMNILPTGYAASY----KSGKLLIELSAKLMVLDTMLA-VIKMTTDDKIVLVSNYTQ 525
F+ L + + + KL L +L + + +L
Sbjct: 350 FDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRA 409
Query: 526 T----LDLFERLSKLRGYKYVRL--------DGSMTIKKRAKVVETFNKTSNEFIFMLSS 573
+ E KL K L + MT+ + +++ F K S + ++++
Sbjct: 410 LVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAF-KASGDHNILIAT 468
Query: 574 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE----- 628
G+++ N +++++ N Q R G+ + + S +
Sbjct: 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR----GRARGSKCFLLTSNAGVIEKEQI 524
Query: 629 ----EKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDK-IKCSR 683
EKMM + + + E + + + Q + + D +K + C +
Sbjct: 525 NMYKEKMMND-SILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRK 583
Query: 684 C 684
C
Sbjct: 584 C 584
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 51.5 bits (122), Expect = 9e-07
Identities = 66/590 (11%), Positives = 168/590 (28%), Gaps = 76/590 (12%)
Query: 116 TPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQREGVKFMYECVTGVRIEDAYGCIM 175
P + + L + I V R +Q E + G ++
Sbjct: 220 AEPDDNLSENLGSAAEGIGKPPPVYETKK--ARSYQIELA---QPAINGKN------ALI 268
Query: 176 ADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSS-LVKNWCNEITKWLG---GR 231
G GKT I + + P + K + +A + + N
Sbjct: 269 CAPTGSGKTFVSILICEHHFQNMPAGRK--AKVVFLATKVPVYEQQKNVFKHHFERQGYS 326
Query: 232 VAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR---SHASVLHKNEVGLVL 288
V + + S ++ + I+V++ + ++ + L++
Sbjct: 327 VQGISGENFSNVSVEKVIEDSD----------IIVVTPQILVNSFEDGTLTSLSIFTLMI 376
Query: 289 CDEGHRLKNCESQTYQALMGLKAK--------RRVLLSGTP-------IQNDLLEYFSLV 333
DE H L+ K + + L+ + I+ + SL
Sbjct: 377 FDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLC 436
Query: 334 HFVNQGILGTAQEFRKQYETPILRGQ------DSCASDAERTKANERLEQLIGIVNR--C 385
+++ + T +E ++ + + + + + + + + ++
Sbjct: 437 SYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAY 496
Query: 386 LIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALS 445
+ + + E + + + + + + R +
Sbjct: 497 VDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556
Query: 446 SITSLKKLCNHPDLVMDKIQTGADGFENA-----MNILPTGYAASYKSGKLLIELSAKLM 500
I+ ++ + + + +G K + KL
Sbjct: 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLE 616
Query: 501 VLDTMLAV-IKMTTDDKIVLVSNYTQT----LDLFERLSKLRGYKYVRLDGS-------- 547
L +L + + +L + E L K L G
Sbjct: 617 ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTG 676
Query: 548 MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARV 607
MT+ + V++ F KTS + ++++ G++++ N +V+++ N Q R
Sbjct: 677 MTLPSQKGVLDAF-KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR- 734
Query: 608 WRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFS 657
G+ S + E + ++ ++ V ++ F+
Sbjct: 735 ---GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFA 781
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 47.2 bits (111), Expect = 2e-05
Identities = 72/551 (13%), Positives = 162/551 (29%), Gaps = 67/551 (12%)
Query: 173 CIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLVK---NWCNEITKWL 228
++ G GKT I + + P + K + +A + + N +
Sbjct: 25 ALICAPTGSGKTFVSILICEHHFQNMPAGRK--AKVVFLATKVPVYEQQKNVFKHHFERQ 82
Query: 229 GGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR---SHASVLHKNEVG 285
G V + + S ++ + I+V++ + ++ +
Sbjct: 83 GYSVQGISGENFSNVSVEKVIEDSD----------IIVVTPQILVNSFEDGTLTSLSIFT 132
Query: 286 LVLCDEGHRLKNCESQTYQALMGLKAKRR--------VLLSGTPIQNDLLEYFSLVHFVN 337
L++ DE H L+ K + L+ + + + +
Sbjct: 133 LMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHIC 192
Query: 338 QGI-LGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRRTSALLSK 396
Q E + + + R+ + L+ T AL+
Sbjct: 193 SLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRT 252
Query: 397 YLPVKTEQVVCIK-MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455
V T K E + + + ++ E AL T + N
Sbjct: 253 IYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312
Query: 456 HPDLVMD--KIQTGADGFENAMNILPTGYAASYKS----------------GKLLIELSA 497
++ + +I + G + K +
Sbjct: 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENP 372
Query: 498 KLMVLDTMLAV-IKMTTDDKIVLVSNYTQT----LDLFERLSKLRGYKYVRLDGS----- 547
KL L +L + + +L + E L K L G
Sbjct: 373 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQ 432
Query: 548 ---MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAM 604
MT+ + V++ F KTS + ++++ G++++ N +V+++ N Q
Sbjct: 433 TTGMTLPSQKGVLDAF-KTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 491
Query: 605 ARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSL 664
R G+ S + E + ++ ++ V ++ F+ ++ +L
Sbjct: 492 GR----GRAAGSKCILVTSKTEVVENEKCNRYKEEMMNKAVEKIQKWDEETFA-KKIHNL 546
Query: 665 FQLEENTISDT 675
Q++E + D+
Sbjct: 547 -QMKERVLRDS 556
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.5
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 6/30 (20%)
Query: 732 FY-QHSTKAEKSKVVTEEEEKE-----EEE 755
+ + S + EK+K+ +K + +
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 29.8 bits (67), Expect = 2.7
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 180 GLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPS-SLV---KNWCNEITKWLGGRVAAL 235
G GKT + + L + A K I++ LV + RV L
Sbjct: 58 GSGKTRVAVYIAKDHLDKKKKASE-PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGL 116
Query: 236 PIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFR----SHASVLHK----NEVGLV 287
D K + S I++ + + + + ++ L+
Sbjct: 117 SGDTQLKISFPEVVKSCD----------IIISTAQILENSLLNLENGEDAGVQLSDFSLI 166
Query: 288 LCDEGHR 294
+ DE H
Sbjct: 167 IIDECHH 173
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 30.2 bits (67), Expect = 2.8
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 5 APSQLSKRSPEDSPGIKTFPPPVKKEKRSCTSRKPLGSVDNEDEPNSK 52
P++++ +S IKT P ++ +K+ + + + ++ED P +K
Sbjct: 518 PPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase,
glucose-6-phosphate, yeast, allosteric AC transferase;
HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A*
3nch_A 3naz_A 3o3c_A* 3rsz_A*
Length = 725
Score = 29.4 bits (65), Expect = 4.9
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 15/115 (13%)
Query: 616 CFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEE-------DVARHFSMSELRSLFQLE 668
F+ S + ++ QA +AL + V + D A + + L + +
Sbjct: 373 AFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTD 432
Query: 669 ENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHC 723
+ + DK+ R + ++ L T H++ + D IL
Sbjct: 433 LGELLKSSDKVMLKRRILALRRPEGQLPPIVT------HNMVDDAN--DLILNKI 479
>1lh0_A OMP synthase; loop closure, monomer closure, orotate
phosphoribosyltransferase; HET: ORO PRP; 2.00A
{Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A*
1sto_A* 1oro_A
Length = 213
Score = 29.0 bits (65), Expect = 5.1
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 16/56 (28%)
Query: 410 MTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSS-ITS-----LKKLCNHPDL 459
M Q++ + ++ GE T L S S DL
Sbjct: 1 MKPYQRQFIEFALNKQVLKF----GEFT------LKSGRKSPYFFNAGLFNTGRDL 46
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 29.5 bits (65), Expect = 5.6
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 532 RLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNL 582
R ++RG + + GS+ + + FN ++ ++++ A G GLNL
Sbjct: 338 RQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL 388
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 29.1 bits (66), Expect = 5.6
Identities = 8/60 (13%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 502 LDTMLAVIKMTTDDK-IVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+ ++ + + T + I+ ++ R++ G+ L G++ +R ++++F
Sbjct: 345 YNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTA-DGHTVACLTGNLEGAQRDAIMDSF 403
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.5
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 586 NRLVMFDPDWNPA 598
L ++ D PA
Sbjct: 27 ASLKLYADDSAPA 39
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 29.0 bits (65), Expect = 6.6
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 18/118 (15%)
Query: 503 DTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNK 562
AV ++ L S+ + F+ L + + + V+ ++
Sbjct: 266 GIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVL--VKDYDF 323
Query: 563 TSNEFIFMLSSK-AGGCGLNLIG-------ANRLVMFDPDWNPANDDQAMARVWRDGQ 612
+ ++ + L+S AG L G A+ L++ P+ +V+ G+
Sbjct: 324 SISDALRPLTSSVAGFLNLTGKGEILPGNDAD-LLVMTPELRI-------EQVYARGK 373
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 28.6 bits (65), Expect = 8.6
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF 560
+ + ++K +V T +L L G+K + G ++ +R KV+ F
Sbjct: 227 FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD-IGFKAGAIHGDLSQSQREKVIRLF 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,332,754
Number of extensions: 693955
Number of successful extensions: 1534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 40
Length of query: 755
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 654
Effective length of database: 3,881,772
Effective search space: 2538678888
Effective search space used: 2538678888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.0 bits)