RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5647
(755 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 291 bits (744), Expect = 1e-92
Identities = 225/353 (63%), Positives = 278/353 (78%), Gaps = 8/353 (2%)
Query: 390 TSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITS 449
TS +LSKYLPVK EQVVC +T LQKELY +K +++ G K+ +++LSSITS
Sbjct: 1 TSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTG---KISVSSLSSITS 57
Query: 450 LKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVI 509
LKKLCNHP L+ +K TG +GF+ A+++ P +Y + + +LS K++VLD +LA+
Sbjct: 58 LKKLCNHPALIYEKCLTGEEGFDGALDLFPQ----NYSTKAVEPQLSGKMLVLDYILAMT 113
Query: 510 KMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETF-NKTSNEFI 568
+ TT DK+VLVSNYTQTLDLFE+L + R Y YVRLDG+M+IKKRAK+VE F N +S EFI
Sbjct: 114 RTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFI 173
Query: 569 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIE 628
FMLSSKAGGCGLNLIGANRLVMFDPDWNPAND+QAMARVWRDGQKK C++YR LSTG+IE
Sbjct: 174 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 233
Query: 629 EKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGI 688
EK++QRQAHKKALSSCVVD E+DV RHFS+ ELR LF L E T+SDTHD+ +C RCVNG
Sbjct: 234 EKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGR 293
Query: 689 QVKPPPLESDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEK 741
QV+PPP +SDCT DLS WHH +KR L DP+L+ W A VSFVF+Q S + ++
Sbjct: 294 QVRPPPDDSDCTCDLSNWHHCADKRGLRDPVLQASWDAAVSFVFHQRSHEDQR 346
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 275 bits (703), Expect = 3e-87
Identities = 210/298 (70%), Positives = 250/298 (83%)
Query: 92 LGVRREGARKALHDPTAPNALVLYTPPQLSAHDLLKIDKDKIQVHVVVDPVLSNILRPHQ 151
LG+RR G RKALHDP ALVLY PP +SAHDL+K DK+K+ VHVVVDPVLS +LRPHQ
Sbjct: 1 LGLRRAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQ 60
Query: 152 REGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIV 211
REGVKF+++CVTG RIE++YGCIMADEMGLGKTLQCITL+WTLL+Q P KP IDK I+V
Sbjct: 61 REGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVV 120
Query: 212 APSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYET 271
+PSSLV+NW NE+ KWLGGRV + IDGGSK EID+KL +F+ G R PIL+ISYET
Sbjct: 121 SPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYET 180
Query: 272 FRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTPIQNDLLEYFS 331
FR HA VLHK +VGLV+CDEGHRLKN ++QTY AL + A+RRVL+SGTPIQNDLLEYFS
Sbjct: 181 FRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFS 240
Query: 332 LVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLEQLIGIVNRCLIRR 389
LVHFVN GILGTAQEF+K++E PIL+G+D+ ASD +R ++L++LI IVNRCLIRR
Sbjct: 241 LVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 134 bits (336), Expect = 6e-36
Identities = 65/270 (24%), Positives = 114/270 (42%), Gaps = 30/270 (11%)
Query: 401 KTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCNHPDLV 460
K E V +T Q +Y +++ + + K LS++ LK++ +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVEN--LFNNIDSVTGIKRKGMILSTLLKLKQIVDHP--- 55
Query: 461 MDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLV 520
A+ +E+ + + DKI +
Sbjct: 56 -------------ALLKGGEQSVRRSGKMIRTMEIIEEAL-----------DEGDKIAIF 91
Query: 521 SNYTQTLD-LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAGGCG 579
+ + + + K + L G ++ K+R ++ F + +LS KAGG G
Sbjct: 92 TQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFG 151
Query: 580 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKK 639
+NL ANR++ FD WNPA +DQA RV+R GQ + V++ +S G++EEK+ Q A K+
Sbjct: 152 INLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR 211
Query: 640 ALSSCVVDCEEDVARHFSMSELRSLFQLEE 669
+L ++ + S ELR + +L
Sbjct: 212 SLFKDIISSGDSWITELSTEELRKVIELSV 241
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 128 bits (323), Expect = 2e-34
Identities = 67/254 (26%), Positives = 131/254 (51%), Gaps = 38/254 (14%)
Query: 138 VVDPV-LSNILRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLR 196
+++P + LRP+Q +G +M + +G +AD+MGLGKTLQ I + +
Sbjct: 3 LLEPYNIKANLRPYQIKGFSWMRF-----MNKLGFGICLADDMGLGKTLQTIAVFSDAKK 57
Query: 197 QGPLAKPLIDKAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTY 256
+ + ++++ P S++KNW E++K+ A+ + SK ++++
Sbjct: 58 ENE-----LTPSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDY-------- 104
Query: 257 GRRPVNPILVISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVL 316
I++ +Y L + E ++ DE +KN +++ ++A+ LK+K R+
Sbjct: 105 ------DIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIA 157
Query: 317 LSGTPIQNDLLEYFSLVHFVNQGILGTAQEFRKQYETPILRGQDSCASDAERTKANERLE 376
L+GTPI+N + + +S++ F+N G+LG+ EF+ ++ TPI +G N E
Sbjct: 158 LTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD------------NMAKE 205
Query: 377 QLIGIVNRCLIRRT 390
+L I++ ++RRT
Sbjct: 206 ELKAIISPFILRRT 219
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 77.2 bits (189), Expect = 4e-16
Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 27/272 (9%)
Query: 372 NERLEQLIGIVNRCLIRRTSALLSKYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTM 431
+ L+ L L+ +S + K ++ Q++ +M +L L+ +
Sbjct: 27 RDALKPLA---ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLH 83
Query: 432 KGGE--NTKLGMTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSG 489
E T+ + I L + K + A+++L
Sbjct: 84 HAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLL--------VQA 135
Query: 490 KLLIELSAKLMVLDTMLAVIKMTTDDKIVLV-SNYTQTLDLFERLSKLRGYKYVRLDGS- 547
K + K+ L ++ + ++V +NY +T G K R G
Sbjct: 136 KEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQA 195
Query: 548 -------MTIKKRAKVVETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 600
++ +++ +++ F EF ++++ G GL++ + +V ++P +
Sbjct: 196 SKENDRGLSQREQKLILDEFA--RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 253
Query: 601 DQAMARVWRDGQKKPCFVYRFLSTGSIEEKMM 632
Q R R G+ P V ++ G+ +E
Sbjct: 254 IQ---RRGRTGRHMPGRVIILMAKGTRDEAYY 282
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 71.5 bits (174), Expect = 1e-14
Identities = 31/232 (13%), Positives = 82/232 (35%), Gaps = 34/232 (14%)
Query: 396 KYLPVKTEQVVCIKMTDLQKELYTNLIKSDAVRRTMKGGENTKLGMTALSSITSLKKLCN 455
K+L T + + + + + ++ Y K ++ ++ T + I
Sbjct: 1 KHLAKYTIKRIFVPLAEDERVEYEKREKV--YKQFLRARGITLRRAEDFNKIVMASGYDE 58
Query: 456 HPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDD 515
+ + ++ ++ K+ L +L + D
Sbjct: 59 RAYEALRAWE---------------------EARRIAFNSKNKIRKLREIL---ERHRKD 94
Query: 516 KIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKA 575
KI++ + + + + + + + + ++R +++E F F ++SS+
Sbjct: 95 KIIIFTRHNELVYRISK-----VFLIPAITHRTSREEREEILEGFRT--GRFRAIVSSQV 147
Query: 576 GGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQ-KKPCFVYRFLSTGS 626
G+++ AN V+ + Q + R+ R + KK +Y +S G+
Sbjct: 148 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 51.8 bits (123), Expect = 5e-08
Identities = 28/175 (16%), Positives = 47/175 (26%), Gaps = 40/175 (22%)
Query: 147 LRPHQREGVKFMYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLID 206
LR +Q + ++ R + G GKT + + L
Sbjct: 71 LRDYQEKALE---------RWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTL------- 114
Query: 207 KAIIVAPSSLVKNWCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILV 266
I+V +L + W + + + GR L
Sbjct: 115 --IVVPTLALAEQWKERLGIF--------------------GEEYVGEFSGRIKELKPLT 152
Query: 267 ISYETFRSHASVLHKNEVGLVLCDEGHRLKNCESQTYQALMGLKAKRRVLLSGTP 321
+S + N L++ DE H L Q A R+ L+ T
Sbjct: 153 VSTYDSAYVNAEKLGNRFMLLIFDEVHHLPA--ESYVQIAQMSIAPFRLGLTATF 205
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 40.3 bits (93), Expect = 6e-04
Identities = 20/188 (10%), Positives = 51/188 (27%), Gaps = 29/188 (15%)
Query: 158 MYECVTGVRIEDAYGCIMADEMGLGKTLQCITLMWTLLRQGPLAKPLIDKAIIVAPSSLV 217
Y+ I+ G++L L L K +I+ P++ +
Sbjct: 116 WYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE------GKILIIVPTTAL 169
Query: 218 KN-WCNEITKWLGGRVAALPIDGGSKAEIDNKLNSFMQTYGRRPVNPILVISYETFRSHA 276
++ + + K+ + + +V+
Sbjct: 170 TTQMADDFVDY-----------RLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQ 218
Query: 277 SVLHKNEVGLVLCDEGHRLKNCESQTYQALMG--LKAKRRVLLSGTPIQNDLLEYFSLVH 334
++ G+++ DE H ++ +++ + LSG+
Sbjct: 219 PKEWFSQFGMMMNDECHLAT---GKSISSIISGLNNCMFKFGLSGSLRDGKANIM----- 270
Query: 335 FVNQGILG 342
G+ G
Sbjct: 271 -QYVGMFG 277
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 35.7 bits (81), Expect = 0.014
Identities = 22/151 (14%), Positives = 37/151 (24%), Gaps = 12/151 (7%)
Query: 582 LIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY-------RFLSTGSIEEKMMQR 634
GA + + W P + + R +K V R + +
Sbjct: 28 YFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKV 87
Query: 635 QAHKKALSSCVVDCEEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPP 694
+ ++ D E VA L + D +V+
Sbjct: 88 VSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQ-----EGKVRAFY 142
Query: 695 LESDCTDDLSCWHHVTEKRWLVDPILKHCWG 725
T D + E+ ILK G
Sbjct: 143 AGPAHTPDGIFVYFPDEQVLYGGCILKEKLG 173
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 32.6 bits (73), Expect = 0.095
Identities = 14/118 (11%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
+ + + + + V+ N + ++ + + + + ++R +++ F
Sbjct: 15 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 74
Query: 562 KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
S+ + A G ++ + ++ +D N N + R R G+K +
Sbjct: 75 SGSSRILISTDLLARGI--DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 130
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.7 bits (68), Expect = 0.41
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 502 LDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKLRGYKYVRLDGSMTIKKRAKVVETFN 561
DT+ + T + V+ N + +D + + + G M K+R +++ F
Sbjct: 22 FDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 81
Query: 562 KTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
++ + + GL++ + ++ +D N + R R G+K +
Sbjct: 82 SGASRVLIS--TDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 137
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 30.3 bits (67), Expect = 0.42
Identities = 8/55 (14%), Positives = 22/55 (40%)
Query: 565 NEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVY 619
+ ++++ G+++ N ++ + NP + + R R G+K
Sbjct: 77 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 131
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 1/108 (0%)
Query: 590 MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCE 649
+ D NP + Q K + +++ +A +K + V D +
Sbjct: 399 VVDMLLNPGGEFQFNGATATYPDVKLAYWAGGNPFAHHQDRNRMLKAWEKLETFIVQDFQ 458
Query: 650 EDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLES 697
+ L + E N I ++ + +V P E+
Sbjct: 459 WTATARHADIVLPATTSYERNDI-ESVGDYSNRAILAMKKVVDPLYEA 505
>d1ojja_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Humicola insolens, Cel7b [TaxId:
34413]}
Length = 399
Score = 29.0 bits (65), Expect = 2.2
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 21/97 (21%)
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARV---WRDGQKK 614
E + T EF F + + CG+N A L P + + A + D Q
Sbjct: 120 EMLHLTGFEFTFDVDATKLPCGMN--SALYLSEMHPTGAKSKYNPGGAYYGTGYCDAQ-- 175
Query: 615 PCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDCEED 651
CFV F+ + + SC C
Sbjct: 176 -CFVTPFI----------NGLGNIEGKGSC---CNSM 198
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 28.7 bits (63), Expect = 3.1
Identities = 9/99 (9%), Positives = 26/99 (26%), Gaps = 1/99 (1%)
Query: 568 IFMLSSKAGGCGLNLIGANRLV-MFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGS 626
+ A ++ + F +P ++ + + +K +R T
Sbjct: 205 AILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWFFKALQQKRKIMGAGHRVYKTYD 264
Query: 627 IEEKMMQRQAHKKALSSCVVDCEEDVARHFSMSELRSLF 665
++ ++ A K E + +
Sbjct: 265 PRARIFKKYASKLGDKKLFEIAERLERLVEEYLSKKGIS 303
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 26.8 bits (59), Expect = 6.0
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 441 MTALSSITSLKKLCNHPDLVMDKIQTGADGFENAMNILPTGYAASYKSGKLLIELSAKLM 500
MT + +IT+ +K + P + + DG NI+P A+ GK++ EL+ KL
Sbjct: 24 MTTVHAITATQKTVDGPSGKLWR-----DGRGALQNIIPASTGAAKAVGKVIPELNGKLT 78
Query: 501 ------------VLDTMLAVIKMTTDDKI 517
V+D + K D I
Sbjct: 79 GMAFRVPTANVSVVDLTCRLEKPAKYDDI 107
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid
(CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId:
562]}
Length = 245
Score = 27.3 bits (59), Expect = 6.6
Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 18/235 (7%)
Query: 477 ILPTGYAASYKSGKLLIELSAKLMVLDTMLAVIKMTTDDKIVLVSNYTQTLDLFERLSKL 536
++P Y +S GK L+++ K M+ +++ ++ + ++ + E+ +
Sbjct: 6 VIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPR----VEQAVQA 61
Query: 537 RGYKYV-----RLDGSMTIKKRAKVVET---FNKTSNEFIFMLSSKAGGCGLNLIGANRL 588
G K + G+ + + VE N +E +
Sbjct: 62 FGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALP 121
Query: 589 VMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHKKALSSCVVDC 648
V A + + V + +Y S + + K
Sbjct: 122 VATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRD 181
Query: 649 EEDVARHFSMSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLESDCTDDL 703
S LE+ + + I+ +V D L
Sbjct: 182 VLQNYSQLPESMPEQAESLEQLRLMNAGINIRT------FEVAATGPGVDTPACL 230
>d3ovwa_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Fusarium oxysporum [TaxId:
5507]}
Length = 400
Score = 27.5 bits (61), Expect = 7.2
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 17/70 (24%)
Query: 558 ETFNKTSNEFIFMLSSKAGGCGLNLIGANRLVMFDPD-------WNPAN--------DDQ 602
E + T EF F + + CG+N GA L D + A D Q
Sbjct: 118 EMLHLTGTEFSFDVEMEKLPCGMN--GALYLSEMPQDGGKSTSRNSKAGAYYGAGYCDAQ 175
Query: 603 AMARVWRDGQ 612
+ +G
Sbjct: 176 CYVTPFINGV 185
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 84
Score = 25.4 bits (56), Expect = 8.3
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 534 SKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576
+++ + LD + I +V+E + F+ M S +
Sbjct: 15 GRMKALVSITLDEAFVIHD-LRVIEGNSGL---FVAMPSKRTP 53
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI,
C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Length = 218
Score = 26.8 bits (58), Expect = 8.8
Identities = 21/179 (11%), Positives = 44/179 (24%), Gaps = 8/179 (4%)
Query: 579 GLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGSIEEKMMQRQAHK 638
G+++ V F + + K C E + +
Sbjct: 28 GVSVEA----VHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEIP 83
Query: 639 KALSSCVVDCEEDVARHFS--MSELRSLFQLEENTISDTHDKIKCSRCVNGIQVKPPPLE 696
S + + R E +L ++ + S P +
Sbjct: 84 S--SYSMTVMRRMMMRITERIAEERNALAITTGESLGQVASQTLDSMHTINEVTNYPVIR 141
Query: 697 SDCTDDLSCWHHVTEKRWLVDPILKHCWGAGVSFVFYQHSTKAEKSKVVTEEEEKEEEE 755
T D + E+ D ++ F +TK ++ K E + +
Sbjct: 142 PLITMDKLEIIKIAEEIGTYDISIRPYEDCCTVFTPASPATKPKREKANRFEAKYDFTP 200
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG
{Bacillus subtilis [TaxId: 1423]}
Length = 92
Score = 25.4 bits (56), Expect = 9.2
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 529 LFERLSKLRGYKYVRLDGSMTIKKRAKVVETFNKTSNEFIFMLSSKAG 576
++R + LD + +V++ N F+ M S +
Sbjct: 10 RVNTDGRMRAIASITLDHEFVVHD-IRVIDGNNGL---FVAMPSKRTP 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,753,627
Number of extensions: 130557
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 32
Length of query: 755
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 663
Effective length of database: 1,144,436
Effective search space: 758761068
Effective search space used: 758761068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)