BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5648
(327 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NZ63|CI078_HUMAN Uncharacterized protein C9orf78 OS=Homo sapiens GN=C9orf78 PE=1
SV=1
Length = 289
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 149/220 (67%), Gaps = 21/220 (9%)
Query: 50 KLEEMKSLQKLRQRPNGVSIISLTVGEKVAEEDELLVKDPFKIKSGGLVNMSALKSGQVK 109
KLEE + +Q LR+RPNGVS ++L VGEKV EE LV DPF++K+GG+V+M LK
Sbjct: 30 KLEETREVQNLRKRPNGVSAVALLVGEKVQEET-TLVDDPFQMKTGGMVDMKKLKERGKD 88
Query: 110 KVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSP 169
K+ + D +GT FSAETN+RDED +MMKYIE +L KRK E +E +
Sbjct: 89 KISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEHEEQKVKPKNA------ 142
Query: 170 EEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDR 229
E L +P+++R SS ++EEMLSNQMLSGIPEVDLGI+AKI+NI +TE+AK +LL ++
Sbjct: 143 -EDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQ 201
Query: 230 HN-KKDGPSQFVPTNMAVNFVQHNRCKYSDPQLGTFLFYH 268
N KKD + FVPTNMAVN+VQHNR FYH
Sbjct: 202 QNKKKDSETSFVPTNMAVNYVQHNR------------FYH 229
>sp|Q3TQI7|CI078_MOUSE Uncharacterized protein C9orf78 homolog OS=Mus musculus PE=1 SV=2
Length = 289
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/220 (52%), Positives = 148/220 (67%), Gaps = 21/220 (9%)
Query: 50 KLEEMKSLQKLRQRPNGVSIISLTVGEKVAEEDELLVKDPFKIKSGGLVNMSALKSGQVK 109
KLEE + +Q LR+RPNGVS +L VGEKV EE LV DPF++ +GG+V+M LK
Sbjct: 30 KLEETREVQNLRKRPNGVSAAALLVGEKVQEET-TLVDDPFQMATGGMVDMKKLKERGKD 88
Query: 110 KVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSP 169
KV + D +GT FSAETN+RDED +MMKYIE +L KRK G +E + + C
Sbjct: 89 KVSEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRK-GIVEQEEQKAKPKNAEDC-- 145
Query: 170 EEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDR 229
L +P+++R SS ++EEMLSNQMLSGIPEVDLGI+AKI+NI +TE+AK +LL ++
Sbjct: 146 ----LYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQ 201
Query: 230 HN-KKDGPSQFVPTNMAVNFVQHNRCKYSDPQLGTFLFYH 268
N KKD + FVPTNMAVN+VQHNR FYH
Sbjct: 202 QNKKKDSETSFVPTNMAVNYVQHNR------------FYH 229
>sp|Q5RC87|CI078_PONAB Uncharacterized protein C9orf78 homolog OS=Pongo abelii PE=2 SV=1
Length = 289
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 148/220 (67%), Gaps = 21/220 (9%)
Query: 50 KLEEMKSLQKLRQRPNGVSIISLTVGEKVAEEDELLVKDPFKIKSGGLVNMSALKSGQVK 109
KLEE + +Q LR+RPNGVS ++L VGEKV EE LV DPF++K+GG+V+M LK
Sbjct: 30 KLEETREVQNLRKRPNGVSAVALLVGEKVQEET-TLVDDPFQMKTGGMVDMKKLKERGKD 88
Query: 110 KVDDAYDTGIGTQFSAETNKRDEDEEMMKYIEEQLSKRKKGEETKEGGQGEEGGVNYCSP 169
K+ + D +GT FSAETN+RDED +MMKYIE +L KRK E +E +
Sbjct: 89 KISEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEHEEQKVKPKNA------ 142
Query: 170 EEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKLLWDR 229
E L +P+++R SS ++EEMLSNQMLSGIPEVD GI+AKI+NI +TE+AK +LL ++
Sbjct: 143 -EDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDQGIDAKIKNIISTEDAKARLLAEQ 201
Query: 230 HN-KKDGPSQFVPTNMAVNFVQHNRCKYSDPQLGTFLFYH 268
N KKD + FVPTNMAVN+VQHNR FYH
Sbjct: 202 QNKKKDSETSFVPTNMAVNYVQHNR------------FYH 229
>sp|Q2YXK4|DPO3_STAAB DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=polC PE=3 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|P68852|DPO3_STAAW DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MW2)
GN=polC PE=3 SV=1
Length = 1436
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 167 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 226
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 227 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 283
Query: 135 EMMK 138
E K
Sbjct: 284 EHFK 287
>sp|Q2G1Z8|DPO3_STAA8 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain NCTC
8325) GN=polC PE=3 SV=1
Length = 1436
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 167 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 226
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 227 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 283
Query: 135 EMMK 138
E K
Sbjct: 284 EHFK 287
>sp|Q2FHH4|DPO3_STAA3 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
USA300) GN=polC PE=3 SV=1
Length = 1436
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 167 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 226
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 227 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 283
Query: 135 EMMK 138
E K
Sbjct: 284 EHFK 287
>sp|Q6G9U9|DPO3_STAAS DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MSSA476) GN=polC PE=3 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|P63982|DPO3_STAAN DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315)
GN=polC PE=1 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|P63981|DPO3_STAAM DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=polC PE=3 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|A6QGG4|DPO3_STAAE DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
Newman) GN=polC PE=3 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|Q5HGG7|DPO3_STAAC DNA polymerase III PolC-type OS=Staphylococcus aureus (strain COL)
GN=polC PE=3 SV=2
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|A7X1P4|DPO3_STAA1 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=polC PE=3 SV=1
Length = 1438
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKAKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 37 EEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED----ELLVKDPFKI 92
++ED + EA +KLE+MK+ + +Q N ++ +G+ + E+ E ++++ FK+
Sbjct: 181 QQEDEQSAREATEKLEKMKAEKAKQQDNNESTVEKCQIGKPIQIENIKPIESIIEEEFKV 240
Query: 93 KSGGL---VNMSALKSGQVK---KVDDAYDTGIGTQFSAETNKRDED 133
G+ +N+ LKSG+ KV D D+ + F+ + NK D D
Sbjct: 241 AIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRK-NKDDLD 286
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 37 EEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED----ELLVKDPFKI 92
++ED + EA +KLE+MK+ + +Q N ++ +G+ + E+ E ++++ FK+
Sbjct: 185 QQEDEQSAREATEKLEKMKAEKAKQQDNNESTVEKCQIGKPIQIENIKPIESIIEEEFKV 244
Query: 93 KSGGL---VNMSALKSGQVK---KVDDAYDTGIGTQFSAETNKRDED 133
G+ +N+ LKSG+ KV D D+ + F+ + NK D D
Sbjct: 245 AIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRK-NKDDLD 290
>sp|Q9HHB8|DNAJ_HALMT Chaperone protein DnaJ OS=Haloferax mediterranei (strain ATCC
33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 /
R-4) GN=dnaJ PE=3 SV=1
Length = 384
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 12 SEDSSPQPIKFKSRKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQ 62
S D+S IK RKK + D S+EED+EE+ + ++K +E+ + + RQ
Sbjct: 12 SRDASKDQIKNAYRKKAAKYHPDVSDEEDAEEKFKKVQKAKEVLTDDEKRQ 62
>sp|P0C1P9|DPO3_STAAU DNA polymerase III PolC-type OS=Staphylococcus aureus GN=polC PE=3
SV=1
Length = 1435
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 15/125 (12%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIIS-LTVGEKVAEED- 82
+++NL + + +EED + A +KLE+MK+ +K +Q+ N S + +G+ + E+
Sbjct: 167 QEQNLASLEAHIQEEDEQSARLATEKLEKMKA-EKAKQQDNKQSAVDKCQIGKPIQIENI 225
Query: 83 ---ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDED 133
E ++++ FK+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 226 KPIESIIEEEFKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDD 282
Query: 134 EEMMK 138
E K
Sbjct: 283 LEHFK 287
>sp|Q6GHH1|DPO3_STAAR DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MRSA252) GN=polC PE=3 SV=1
Length = 1438
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 13/124 (10%)
Query: 25 RKKNLRTRKDSSEEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSIISLTVGEKVAEED-- 82
+++NL + + +EED + A +KLE+MK+ + +Q N ++ +G+ + E+
Sbjct: 169 QEQNLASLEAHIQEEDEQSARLATEKLEKMKAEKSKQQDNNESAVDKCQIGKPIQIENIK 228
Query: 83 --ELLVKDPFKIKSGGL---VNMSALKSGQV---KKVDDAYDTGIGTQFSAETNKRDEDE 134
E ++++ +K+ G+ +N+ LKSG+ KV D D+ + F T K +D
Sbjct: 229 PIESIIEEEYKVAIEGVIFDINLKELKSGRHIVEIKVTDYTDSLVLKMF---TRKNKDDL 285
Query: 135 EMMK 138
E K
Sbjct: 286 EHFK 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,998,080
Number of Sequences: 539616
Number of extensions: 5346353
Number of successful extensions: 28566
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 439
Number of HSP's that attempted gapping in prelim test: 26602
Number of HSP's gapped (non-prelim): 1848
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)