Query psy5648
Match_columns 327
No_of_seqs 132 out of 154
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 23:06:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rod_B NOXA, noxaa; MCL-1, apo 15.0 23 0.00077 22.1 -0.8 7 286-292 18-24 (27)
2 2h32_A Immunoglobulin IOTA cha 13.5 84 0.0029 24.3 1.9 32 295-326 90-121 (126)
3 3mko_A Glycoprotein C; trimeri 10.2 55 0.0019 27.6 -0.2 9 286-294 67-75 (137)
4 2zjr_O 50S ribosomal protein L 9.6 61 0.0021 25.9 -0.1 16 18-33 68-84 (100)
5 1c94_A Retro-GCN4 leucine zipp 9.2 1E+02 0.0035 20.4 0.9 14 49-62 23-37 (38)
6 3v2d_V 50S ribosomal protein L 8.1 62 0.0021 26.0 -0.7 16 18-33 69-85 (101)
7 3bbo_T Ribosomal protein L21; 7.9 1E+02 0.0034 28.9 0.5 17 17-33 194-211 (257)
8 3r8s_R 50S ribosomal protein L 7.7 66 0.0023 25.8 -0.7 16 18-33 71-87 (103)
9 2yu6_A YTH domain-containing p 7.2 3.7E+02 0.013 22.4 3.7 47 272-320 11-70 (141)
10 3mmi_A Myosin-4; globular tail 7.2 1.8E+02 0.0063 28.4 2.1 35 258-292 208-242 (386)
No 1
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=15.04 E-value=23 Score=22.06 Aligned_cols=7 Identities=57% Similarity=1.621 Sum_probs=5.3
Q ss_pred hhcCccc
Q psy5648 286 KYCNWSK 292 (327)
Q Consensus 286 ~~~~~~~ 292 (327)
-||.||.
T Consensus 18 vyctwsa 24 (27)
T 2rod_B 18 VYCTWSA 24 (27)
T ss_dssp HHHHHHS
T ss_pred eEEeecC
Confidence 4899974
No 2
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=13.54 E-value=84 Score=24.33 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=15.4
Q ss_pred cCcceEEEeccCCCcccccccccccCCCCCCC
Q psy5648 295 ADGTYFFASVGNSGENHFAGFLEFKPAPQLPL 326 (327)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (327)
..|+||.+.....+..++.=-|...|.||.|.
T Consensus 90 DsG~Y~C~~~~~~~~~~~~t~l~v~~~~~~~~ 121 (126)
T 2h32_A 90 DEAMYYCAMGARSSEKEEREREWEEEMEPTAA 121 (126)
T ss_dssp GCEEEEEEEECSCCCCCCTTCC----------
T ss_pred HCEEEEEEEEcCCCCcceeEEEeeccCCCccc
Confidence 45888888766666666666678888888774
No 3
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=10.18 E-value=55 Score=27.64 Aligned_cols=9 Identities=67% Similarity=1.575 Sum_probs=7.9
Q ss_pred hhcCccccc
Q psy5648 286 KYCNWSKFF 294 (327)
Q Consensus 286 ~~~~~~~~~ 294 (327)
-|||++||+
T Consensus 67 PYCNYtKFW 75 (137)
T 3mko_A 67 PYCNYSKFW 75 (137)
T ss_dssp CBCCCCHHH
T ss_pred CCcCccceE
Confidence 399999996
No 4
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=9.65 E-value=61 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=12.5
Q ss_pred CCccccCC-CCcccccC
Q psy5648 18 QPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 18 ~~v~FKkk-kKn~RkR~ 33 (327)
.-+.||+| ||++||+.
T Consensus 68 Kv~vfK~krrK~yrrk~ 84 (100)
T 2zjr_O 68 KIYIRKYKSGVQYRRRT 84 (100)
T ss_dssp CEEEEEECSSSCCEEEE
T ss_pred cEEEEEECCCCCCcCCC
Confidence 34679988 89998875
No 5
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=9.25 E-value=1e+02 Score=20.43 Aligned_cols=14 Identities=64% Similarity=0.817 Sum_probs=9.9
Q ss_pred hhHHHHH-HHHHhhc
Q psy5648 49 KKLEEMK-SLQKLRQ 62 (327)
Q Consensus 49 ~~LeEik-eLQKlRk 62 (327)
..|+|++ +|||+|+
T Consensus 23 slleevkdelqkmrq 37 (38)
T 1c94_A 23 SLLEEVKDELQKMRQ 37 (38)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhc
Confidence 4566765 6899885
No 6
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=8.05 E-value=62 Score=25.98 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=12.5
Q ss_pred CCccccCC-CCcccccC
Q psy5648 18 QPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 18 ~~v~FKkk-kKn~RkR~ 33 (327)
.-+.||+| ||++|++.
T Consensus 69 Kv~vfK~krrK~yrrk~ 85 (101)
T 3v2d_V 69 KILVSKFKAKVQYRRKK 85 (101)
T ss_dssp CEEEEEEETTTTEEEEE
T ss_pred cEEEEEECCCCCcCCCC
Confidence 34689988 89998875
No 7
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=7.87 E-value=1e+02 Score=28.86 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=13.5
Q ss_pred CCCccccCC-CCcccccC
Q psy5648 17 PQPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 17 ~~~v~FKkk-kKn~RkR~ 33 (327)
...+.||+| ||++||+.
T Consensus 194 kKIiVFK~KRRK~yRRk~ 211 (257)
T 3bbo_T 194 DKVIVFKYKKKKNYRRNI 211 (257)
T ss_dssp SCCCEEECCTTTTCCEEE
T ss_pred CcEEEEEeCCCCCCcCCC
Confidence 345789998 89999886
No 8
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=7.68 E-value=66 Score=25.84 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=12.5
Q ss_pred CCccccCC-CCcccccC
Q psy5648 18 QPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 18 ~~v~FKkk-kKn~RkR~ 33 (327)
.-+.||+| ||++|++.
T Consensus 71 Kv~vfK~krrK~yrrk~ 87 (103)
T 3r8s_R 71 KVKIVKFRRRKHYRKQQ 87 (103)
T ss_dssp CEEEEEEETTTTEEEEE
T ss_pred cEEEEEecCCCCccCCC
Confidence 35679988 89998875
No 9
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.21 E-value=3.7e+02 Score=22.38 Aligned_cols=47 Identities=28% Similarity=0.527 Sum_probs=30.6
Q ss_pred HHHHhhh-HHHHHHHhhcCcccc----------c--cCcceEEEeccCCCcccccccccccC
Q psy5648 272 FLLLQYS-EAILVMRKYCNWSKF----------F--ADGTYFFASVGNSGENHFAGFLEFKP 320 (327)
Q Consensus 272 ~~~~~~~-~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (327)
|++--|+ +.|-.-.+|.-|+-- | ++--|+|-||..|| ||.|+-+..-
T Consensus 11 FIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg--~F~G~A~M~s 70 (141)
T 2yu6_A 11 FIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSG--HFQGFSRMSS 70 (141)
T ss_dssp EEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSS--EECEEEEECS
T ss_pred EEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCC--eEEEEEEEcc
Confidence 3333343 346666677777532 2 25789999998776 8999987654
No 10
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=7.18 E-value=1.8e+02 Score=28.42 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCCccchhhHHHHHHHHHhhhHHHHHHHhhcCccc
Q psy5648 258 DPQLGTFLFYHYVYFLLLQYSEAILVMRKYCNWSK 292 (327)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (327)
++.+-.-+|-...||+-.+.--.++.-|+||.|++
T Consensus 208 ~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~ 242 (386)
T 3mmi_A 208 VDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKY 242 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHH
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHccCcccCcch
Confidence 33555556666667777777777888889999985
Done!