Query psy5648
Match_columns 327
No_of_seqs 132 out of 154
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 23:06:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vjva1 d.58.57.1 (A:6-130) IS 18.7 24 0.0017 26.9 1.9 18 291-309 99-116 (125)
2 d2fyxa1 d.58.57.1 (A:1-130) Pu 10.8 53 0.0038 24.9 1.9 20 290-309 98-117 (130)
3 d1k8ba_ d.241.1.1 (A:) Transla 8.8 69 0.005 21.0 1.6 15 132-146 24-38 (52)
4 d2j01v1 b.155.1.1 (V:1-101) Ri 7.5 52 0.0038 24.3 0.5 17 17-33 68-85 (101)
5 d2zjro1 b.155.1.1 (O:5-98) Rib 6.3 54 0.0039 23.9 0.1 15 19-33 65-80 (94)
6 d3e99a1 d.17.4.4 (A:1-163) Ben 5.4 84 0.0061 22.9 0.7 35 273-308 12-47 (163)
7 d1zvpa1 d.58.18.9 (A:2-67) Hyp 5.3 1.4E+02 0.01 20.2 1.8 20 288-307 11-30 (66)
8 d2qamr1 b.155.1.1 (R:1-103) Ri 4.6 81 0.0059 23.3 0.1 16 18-33 71-87 (103)
9 d2zjr11 g.41.8.6 (1:2-54) Ribo 4.5 40 0.0029 22.7 -1.6 10 282-291 34-43 (53)
10 d2f5ga1 d.58.57.1 (A:2-131) Pu 4.1 2.6E+02 0.019 20.7 2.8 18 292-309 97-114 (130)
No 1
>d2vjva1 d.58.57.1 (A:6-130) ISHP608 transposase {Helicobacter pylori [TaxId: 210]}
Probab=18.73 E-value=24 Score=26.85 Aligned_cols=18 Identities=17% Similarity=0.492 Sum_probs=13.4
Q ss_pred cccccCcceEEEeccCCCc
Q psy5648 291 SKFFADGTYFFASVGNSGE 309 (327)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~ 309 (327)
..|+++| ||..|||++-.
T Consensus 99 ~~fWs~g-Yf~~TvG~~~~ 116 (125)
T d2vjva1 99 PTLWTNS-CFISTVGGAPL 116 (125)
T ss_dssp SCSBCSC-EEEEEECSSCH
T ss_pred cCcCCCC-EEEEeCCCCCH
Confidence 3466777 99999998654
No 2
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.82 E-value=53 Score=24.87 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.9
Q ss_pred ccccccCcceEEEeccCCCc
Q psy5648 290 WSKFFADGTYFFASVGNSGE 309 (327)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~ 309 (327)
|..+|--..||..|||++-.
T Consensus 98 w~~~~Ws~gY~~~SvG~~~~ 117 (130)
T d2fyxa1 98 WGGNLWNPSYCVLTVSEHTR 117 (130)
T ss_dssp GTTSSCCSCEEEECCCTTHH
T ss_pred cCCccccCcEEEEccCCCCH
Confidence 76666666699999998643
No 3
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.83 E-value=69 Score=20.98 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHh
Q psy5648 132 EDEEMMKYIEEQLSK 146 (327)
Q Consensus 132 eDkHMmkYIEeELak 146 (327)
...|+++||-.||.-
T Consensus 24 ~p~hv~kfl~~ELgt 38 (52)
T d1k8ba_ 24 DEEFFAKYLLKETGS 38 (52)
T ss_dssp CHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhCC
Confidence 577999999999974
No 4
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}
Probab=7.49 E-value=52 Score=24.34 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.1
Q ss_pred CCCccccCC-CCcccccC
Q psy5648 17 PQPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 17 ~~~v~FKkk-kKn~RkR~ 33 (327)
..-+.||.| ||++|++.
T Consensus 68 ~Kv~vfK~krRK~y~R~~ 85 (101)
T d2j01v1 68 KKILVSKFKAKVQYRRKK 85 (101)
T ss_dssp CCCCCCCCCEECCCCEEC
T ss_pred CcEEEEEEcCcCCcccCC
Confidence 345789998 88998875
No 5
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.29 E-value=54 Score=23.92 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=11.7
Q ss_pred CccccCC-CCcccccC
Q psy5648 19 PIKFKSR-KKNLRTRK 33 (327)
Q Consensus 19 ~v~FKkk-kKn~RkR~ 33 (327)
-+.||.| ||++|++.
T Consensus 65 i~vfK~krrK~yrRk~ 80 (94)
T d2zjro1 65 IYIRKYKSGVQYRRRT 80 (94)
T ss_dssp EEEEEECSSSCCEEEE
T ss_pred eEEEEEcCCCCccccC
Confidence 4678888 78888864
No 6
>d3e99a1 d.17.4.4 (A:1-163) Benzoate 1,2-dioxygenase beta subunit BenB {Burkholderia mallei [TaxId: 13373]}
Probab=5.40 E-value=84 Score=22.86 Aligned_cols=35 Identities=14% Similarity=0.384 Sum_probs=22.3
Q ss_pred HHHhhhHHHHHHHhhcCcccccc-CcceEEEeccCCC
Q psy5648 273 LLLQYSEAILVMRKYCNWSKFFA-DGTYFFASVGNSG 308 (327)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 308 (327)
||..|+.+|-- +.+-.|...|. |++|.+.+-++.+
T Consensus 12 ll~rya~~lD~-~d~d~~~~lFteDa~~~~~~~~~~~ 47 (163)
T d3e99a1 12 FLYRESRLLDD-KAWDAWLDCYRADAVFWMPSWDDAD 47 (163)
T ss_dssp HHHHHHHHHHT-TCHHHHHTTEEEEEEEEEECCCC--
T ss_pred HHHHHHHHHcc-cCHHHHHHhcCCceEEEecCCCccc
Confidence 45566665543 56677877775 8998887765543
No 7
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=5.30 E-value=1.4e+02 Score=20.21 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=15.4
Q ss_pred cCccccccCcceEEEeccCC
Q psy5648 288 CNWSKFFADGTYFFASVGNS 307 (327)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~ 307 (327)
++-+--..+|.|.|+||.++
T Consensus 11 ~~m~P~L~~g~yVF~t~~~~ 30 (66)
T d1zvpa1 11 QSMSPELMAGDYVFCTVNGA 30 (66)
T ss_dssp HTCEEEECSSCEEEEEECSC
T ss_pred HHCCceECCCcEEEEEECCc
Confidence 34556678999999999654
No 8
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}
Probab=4.59 E-value=81 Score=23.29 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=12.2
Q ss_pred CCccccCC-CCcccccC
Q psy5648 18 QPIKFKSR-KKNLRTRK 33 (327)
Q Consensus 18 ~~v~FKkk-kKn~RkR~ 33 (327)
..+.||.| ||++|++.
T Consensus 71 Ki~vfK~krrk~yrr~~ 87 (103)
T d2qamr1 71 KVKIVKFRRRKHYRKQQ 87 (103)
T ss_dssp CEEEEEECTTSSCEEEE
T ss_pred cEEEEEecCCCcccccC
Confidence 35678888 78888764
No 9
>d2zjr11 g.41.8.6 (1:2-54) Ribosomal protein L33p {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.54 E-value=40 Score=22.65 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=6.5
Q ss_pred HHHHhhcCcc
Q psy5648 282 LVMRKYCNWS 291 (327)
Q Consensus 282 ~~~~~~~~~~ 291 (327)
|.|+|||.|-
T Consensus 34 lel~KydP~~ 43 (53)
T d2zjr11 34 LELKKYDPVA 43 (53)
T ss_pred eEEEccCCCC
Confidence 4567777764
No 10
>d2f5ga1 d.58.57.1 (A:2-131) Putative transposase SSO1474 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=4.08 E-value=2.6e+02 Score=20.67 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=12.6
Q ss_pred ccccCcceEEEeccCCCc
Q psy5648 292 KFFADGTYFFASVGNSGE 309 (327)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~ 309 (327)
.+|-...||..|||++-.
T Consensus 97 ~~~W~~gY~~~tvg~~~~ 114 (130)
T d2f5ga1 97 GKLWTRSYFVATAGNVSS 114 (130)
T ss_dssp SCSBCSCEEEEEEBCCCH
T ss_pred CCcccCCeEEEecCCCCH
Confidence 444455699999997644
Done!