RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5648
         (327 letters)



>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
           receptor, N-terminal domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 156

 Score = 29.8 bits (65), Expect = 0.28
 Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 10/107 (9%)

Query: 166 YCSPEEAALQAVPDHLRQSSTHQSEEMLSNQMLSGIPEVDLGIEAKIRNIEATEEAKLKL 225
            C+           HL  +       + + Q L  +   DL    ++RN+         +
Sbjct: 14  RCT--RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLT--------I 63

Query: 226 LWDRHNKKDGPSQFVPTNMAVNFVQHNRCKYSDPQLGTFLFYHYVYF 272
           +          +      ++   +  N  +    +    L    +  
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110


>d1tdza2 b.113.1.1 (A:2-131) DNA repair protein MutM (Fpg)
           {Lactococcus lactis [TaxId: 1358]}
          Length = 130

 Score = 27.4 bits (60), Expect = 1.4
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 4/103 (3%)

Query: 202 PEVD---LGIEAKIRNIEATEEAKLKLLWDRHNKKDGPSQFVPTNMAVNFVQHNRCKYSD 258
           PEV+     +E +I   +     +           +   + +         +  +    +
Sbjct: 3   PEVETVRRELEKRIVG-QKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFE 61

Query: 259 PQLGTFLFYHYVYFLLLQYSEAILVMRKYCNWSKFFADGTYFF 301
                 L  H       + +       K+ + +  FADG   +
Sbjct: 62  IGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMKFADGQLIY 104


>d1o70a1 b.118.1.1 (A:328-467) Fasciclin I {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 140

 Score = 27.4 bits (60), Expect = 1.5
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 239 FVPTNMAVNFVQHNRCKYSDPQLGTFLFYHYVY 271
             P+N A N    N       ++   L  H + 
Sbjct: 33  LAPSNEAWNSSNINNVLRDRNKMRQILNMHIIK 65


>d1cq3a_ b.27.1.1 (A:) Soluble secreted chemokine inhibitor, VCCI
           {Cowpox virus [TaxId: 10243]}
          Length = 224

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 37  EEEDSEEEMEALKKLEEMKSLQKLRQRPNGVSII-----------SLTVGEKVAEEDELL 85
            EE+ +  ++    L    S +K+       S I           S+ +G+   E  EL 
Sbjct: 133 SEEEKDSNIKTHPVLGSNISHKKVSYEDIIGSTIVDTKCVKNLEISVRIGDMCKESSELE 192

Query: 86  VKDPFKIKSGGL 97
           VKD FK   G  
Sbjct: 193 VKDGFKYVDGSA 204


>d1gnta_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 553

 Score = 26.7 bits (59), Expect = 5.1
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 102 ALKSGQVKKVDDAYDTGI-GTQFSAETNKRDEDEEMMKYIEEQLSKRKKGEETKEGGQGE 160
             K  ++ + D + D  +    F+  TN   +D      I E L++R K           
Sbjct: 45  GEKLKELGQPDRSNDDFVLQGLFATITNANWDDARFEAMISEGLARRDKLRNAFLAVYKA 104

Query: 161 EGGVNYCSPEEAALQAVPD 179
           + G ++  P   A     D
Sbjct: 105 KNGKDFSEPLPEAATWTGD 123


>d1y7pa1 c.23.1.7 (A:79-217) Hypothetical protein AF1403, C-terminal
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 139

 Score = 25.5 bits (56), Expect = 5.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 7/50 (14%)

Query: 52  EEMKSLQKLRQRPNGVSIISLTVGEKVAEEDELLVKDPFKIKSGGLVNMS 101
           EE+K L+K     +G+ +ISL++   V +  ++++ DP  + +G L  M 
Sbjct: 82  EEVKKLRK-----SGIRVISLSMFGSVPDVADVVISDP--VMAGTLAVMH 124


>d1jixa_ c.87.1.1 (A:) beta-Glucosyltransferase (DNA-modifying)
           {Bacteriophage T4 [TaxId: 10665]}
          Length = 351

 Score = 26.2 bits (57), Expect = 5.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 81  EDELLVKDPFKIKSGGLVNMSALKSGQVKKVDD 113
           E+ELL+K P K+ S G +N+   K+   KKVD+
Sbjct: 123 EEELLIKSPIKVISQG-INLDIAKAAH-KKVDN 153


>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
          carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 250

 Score = 25.9 bits (57), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 34 DSSEEEDSEEEMEALKKLEEMKSLQKLRQRPN 65
          D SEEE        L ++EE   L++L++  N
Sbjct: 38 DGSEEE----NGRLLGQMEEEGILRRLKKYDN 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,172,609
Number of extensions: 55880
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 13
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.1 bits)