BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5649
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDX 186
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADL 411
Query: 187 XXXXXXXX-------------XXXXVETEGTGQV-LSYDGVMRALDHVKPSAMRQVLVEV 232
++ E + ++ D AL PSA+R+ +VEV
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 471
Query: 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
P V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC KT++AKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 293 ATESKLNFISVK 304
A E + NFIS+K
Sbjct: 532 ANECQANFISIK 543
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + D+GG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++ F
Sbjct: 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQER-----RLLSCLVTQVDRLHELQACVVLLAVTTS 123
R + + R+++ ++T++D + + V ++ T
Sbjct: 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNR 625
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGRLDQ I +P+P R AIL L K P + D ++ +A +T+GF G
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSG 684
Query: 184 GD 185
D
Sbjct: 685 AD 686
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDX 186
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADL 411
Query: 187 XXXXXXXX-------------XXXXVETEGTGQV-LSYDGVMRALDHVKPSAMRQVLVEV 232
++ E + ++ D AL PSA+R+ +VEV
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 471
Query: 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
P V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC KT++AKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 293 ATESKLNFISVK 304
A E + NFIS+K
Sbjct: 532 ANECQANFISIK 543
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + DIGG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++ F
Sbjct: 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQER-----RLLSCLVTQVDRLHELQACVVLLAVTTS 123
R + + R+++ ++T++D + + V ++ T
Sbjct: 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNR 625
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGRLDQ I +P+P R AIL L K P + D ++ +A +T+GF G
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSG 684
Query: 184 GD 185
D
Sbjct: 685 AD 686
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 64/81 (79%)
Query: 224 AMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGC 283
A+R+ +VEVP V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 284 SKTMIAKALATESKLNFISVK 304
KT++AKA+A E + NFIS+K
Sbjct: 61 GKTLLAKAIANECQANFISIK 81
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++ F
Sbjct: 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 104
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQER-----RLLSCLVTQVDRLHELQACVVLLAVTTS 123
R + + R+++ ++T++D + + V ++ T
Sbjct: 105 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNR 163
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGRLDQ I +P+P R AIL L K P + D ++ +A +T+GF G
Sbjct: 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSG 222
Query: 184 GD 185
D
Sbjct: 223 AD 224
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDX 186
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADL 411
Query: 187 XXXXXXXX-------------XXXXVETEGTGQV-LSYDGVMRALDHVKPSAMRQVLVEV 232
++ E + ++ D AL PSA+R+ +VEV
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 471
Query: 233 PNVKWSDIGGQ 243
P V W DIGG+
Sbjct: 472 PQVTWEDIGGR 482
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + DIGG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDX 186
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADL 411
Query: 187 XXXXXXXX-------------XXXXVETEGTGQV-LSYDGVMRALDHVKPSAMRQVLVEV 232
++ E + ++ D AL PSA+R+ +VEV
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 471
Query: 233 PNVKWSDIGGQ 243
P V W DIGG+
Sbjct: 472 PQVTWEDIGGR 482
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + DIGG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDX 186
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADL 411
Query: 187 XXXXXXXX-------------XXXXVETEGTGQV-LSYDGVMRALDHVKPSAMRQVLVEV 232
++ E + ++ D AL PSA+R+ +VEV
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEV 471
Query: 233 PNVKWSDIGGQ 243
P V W DIGG+
Sbjct: 472 PQVTWEDIGGR 482
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + DIGG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 57/73 (78%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E PNV++ DIGG ++ ++R+ VE PLKHPE F ++GI+PP+GIL++GPPG KT++AK
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69
Query: 291 ALATESKLNFISV 303
A+ATE+ FI V
Sbjct: 70 AVATETNATFIRV 82
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 9/187 (4%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
+ G++ GIL+YG GTGKT L ++A+ + + +++ KF GE +K
Sbjct: 43 FEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDI 102
Query: 65 FXXXXXXXXXXXXXXXXXXXCTGRNRS----DQE-RRLLSCLVTQVDRLHELQACVVLLA 119
F R + D+E +R L L+ ++D + + V ++
Sbjct: 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF-DARGDVKIIG 161
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFIT 178
T D +D ++ PGR D+ IE+P P R IL K+ +L+ D ++++A +T
Sbjct: 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--NLAEDVNLEEIAKMT 219
Query: 179 HGFVGGD 185
G VG +
Sbjct: 220 EGCVGAE 226
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 55/73 (75%)
Query: 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKA 291
VPNV W+DIG ++++ +L ++ P+++P+ F LG+ P G+L+ GPPGC KT++AKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 292 LATESKLNFISVK 304
+A ES LNFISVK
Sbjct: 64 VANESGLNFISVK 76
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+ G+L+ G G GKT L ++A+ ++ + ++ ++ + + GE+E ++ F
Sbjct: 40 GLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA 99
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQER----RLLSCLVTQVDRLHELQACVVLLAVTTSL 124
C RSD+E R+++ L+T++D L Q V ++A T
Sbjct: 100 KNSAPCVIFFDEVDALCP--RRSDRETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRP 156
Query: 125 DNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158
D +D ++ PGRLD+ + + +P R AIL +
Sbjct: 157 DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTI 190
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 54/85 (63%)
Query: 219 HVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMF 278
+ PS + E P+V +SD+GG + KLR+ VE PL PE FA LGI PP+GIL++
Sbjct: 190 RIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLY 249
Query: 279 GPPGCSKTMIAKALATESKLNFISV 303
GPPG KT+ A+A+A + FI V
Sbjct: 250 GPPGTGKTLCARAVANRTDATFIRV 274
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+ GIL+YG GTGKT ++A+ + + +++ K+ GE ++ F
Sbjct: 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMA 298
Query: 69 XXXXX-----XXXXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS 123
G ++ +R + L+TQ+D V+ A T
Sbjct: 299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA-TNR 357
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156
+ +D +L PGR+D+++E +P + RA I
Sbjct: 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFR 390
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 4/179 (2%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA 293
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
R ++ + ERR++S L+T +D L + +A V+++A T ++
Sbjct: 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNS 352
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
+D +LR GR D+E+++ +P R IL + + D ++QVA THG VG D
Sbjct: 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGAD 410
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + D+GG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 295 ESKLNFI 301
E+ F
Sbjct: 261 ETGAFFF 267
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E P+V ++D+GG D K ++R++VE PL + + ++GI PPRG+L++GPPG KTM+ K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 291 ALATESKLNFISV 303
A+A +K FI V
Sbjct: 225 AVANSTKAAFIRV 237
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+ G+L+YG GTGKT L+ ++A+ K + + ++ K+ GE ++ F
Sbjct: 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA 261
Query: 69 XXXXXXXXXXXXXXXXCTGR----NRSDQE-RRLLSCLVTQVDRLHELQACVVLLAVTTS 123
T R SD+E +R+L L+TQ+D + V++A T
Sbjct: 262 RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA-TNR 320
Query: 124 LDNVDVSLRTPGRLDQEIELP-VPSRDQRAAILHCLLTKV 162
D +D +L PGRLD++IE P + R +R I + +K+
Sbjct: 321 ADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM 360
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 213 VMRALD-HVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKP 271
+MR L P E + + IGG E +LR+ +E PLK+PE F R+GIKP
Sbjct: 155 IMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKP 214
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFI 301
P+G+L++GPPG KT++AKA+A NFI
Sbjct: 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFI 244
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 7/186 (3%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
Q G+K G+L+YG GTGKT L ++A+ + + + + + K+ GE+ ++
Sbjct: 207 FQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREM 266
Query: 65 FXXXXXXXXXXXXXXXXXXXCTGR----NRSDQE-RRLLSCLVTQVDRLHELQACVVLLA 119
F R +D+E +R L L+TQ+D L +++A
Sbjct: 267 FAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITH 179
T D +D +L PGRLD+++E+P+P+ R I KV + D + ++
Sbjct: 327 -TNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD-FEAAVKMSD 384
Query: 180 GFVGGD 185
GF G D
Sbjct: 385 GFNGAD 390
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 206 QVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFA 265
+ +S GV++ D P + + P +SDIGG + ++++SVE PL HPE +
Sbjct: 152 KTMSIVGVLQ--DDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYE 209
Query: 266 RLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
+GIKPP+G++++G PG KT++AKA+A ++ F+ +
Sbjct: 210 EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G+K G+++YG GTGKT L ++A+ + I +++ K+ G+ + F
Sbjct: 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVA 271
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQ--ER---RLLSCLVTQVDRLHELQACVVLLAVTTS 123
T R S+ ER R + L+ Q+D + V++A T
Sbjct: 272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA-TNK 330
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
++ +D +L PGR+D++I P + IL +K+ +LS D
Sbjct: 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM--NLSED 374
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALA 293
V + D+ G E KL++R+ V++ LK PE F +LG K P+G L+ GPPGC KT++AKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 294 TESKLNFISV 303
TE+++ F+++
Sbjct: 61 TEAQVPFLAM 70
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G K G L+ G G GKT L ++A+ +V + + A+ G R+++ F
Sbjct: 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA 94
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSD--------QERRLLSCLVTQVDRLHELQACVVLLAV 120
G+ RS +E + L+ L+ ++D + V++LA
Sbjct: 95 RARAPCIVYIDEID--AVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH-VIVLAS 151
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL--HCLLTKVPHSLSTDQIQQVAFIT 178
T D +D +L PGRLD+ + + +P+ +R I H K+ S ST Q++A +T
Sbjct: 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQS-STFYSQRLAELT 210
Query: 179 HGFVGGD 185
GF G D
Sbjct: 211 PGFSGAD 217
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E PNV++ D+ G +E K ++ + V++ LK+PE +A LG K P+G+L+ GPPG KT++AK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 291 ALATESKLNFISV 303
A+A E+ + F S+
Sbjct: 63 AVAGEAHVPFFSM 75
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 13/186 (6%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G K G+L+ G GTGKT L ++A V + + F G R++ F
Sbjct: 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETA 99
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS--------DQERRLLSCLVTQVDRLHELQACVVLLAV 120
G++R+ D+ + L+ L+ ++D A V++LA
Sbjct: 100 KKQAPSIIFIDEID--AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFITH 179
T + +D +L PGR D+++ + P + R IL + V L+ D +Q+VA +T
Sbjct: 158 TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV--KLANDVNLQEVAKLTA 215
Query: 180 GFVGGD 185
G G D
Sbjct: 216 GLAGAD 221
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
+L E PNVKW D+ G + K L+++V P+K P F + KP GIL++GPPG K+
Sbjct: 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 99
Query: 288 IAKALATESKLNFISV 303
+AKA+ATE+ F SV
Sbjct: 100 LAKAVATEANSTFFSV 115
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXX 70
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F
Sbjct: 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 71 XXXXX--XXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128
G S+ RR+ + L+ Q++ + V++L T +D
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
++R R ++ I +P+P R + + P L+ + + + +T G+ G D
Sbjct: 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD 256
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
+L E PNVKW D+ G + K L+++V P+K P F + KP GIL++GPPG K+
Sbjct: 26 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 84
Query: 288 IAKALATESKLNFISV 303
+AKA+ATE+ F SV
Sbjct: 85 LAKAVATEANSTFFSV 100
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXX 70
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 126
Query: 71 XXXXX--XXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128
G S+ RR+ + L+ Q++ + V++L T +D
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 186
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
++R R ++ I +P+P R + + P L+ + + + +T G+ G D
Sbjct: 187 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 241
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
+L E PNVKW D+ G + K L+++V P+K P F + KP GIL++GPPG K+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSY 66
Query: 288 IAKALATESKLNFISV 303
+AKA+ATE+ F SV
Sbjct: 67 LAKAVATEANSTFFSV 82
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXX 70
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F
Sbjct: 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 108
Query: 71 XXXXX--XXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128
G S+ RR+ + L+ Q++ + V++L T +D
Sbjct: 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
++R R ++ I +P+P R + + P L+ + + + +T G+ G D
Sbjct: 169 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 203 GTGQVLSYDGVMRALDHVKPSAMRQVLVEV----PNVKWSDIGGQDEVKLKLRQSVEWPL 258
G G V L +++P + ++ E+ P V W DI G + K +++ V WP+
Sbjct: 45 GAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPM 104
Query: 259 KHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
P+ F L PP+GIL+FGPPG KT+I K +A++S F S+
Sbjct: 105 LRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 5/174 (2%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXXXXXX 74
GIL++G GTGKT + +AS I + + SK+ GE E ++A F
Sbjct: 119 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA 178
Query: 75 XXXXXXXXXXCTGRNRSDQE--RRLLSCLVTQVD-RLHELQACVVLLAVTTSLDNVDVSL 131
+ R + E RR+ + + Q+D + ++++ T +D +
Sbjct: 179 VIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAA 238
Query: 132 RTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
R RL + + +P+P R I+ L++K LS ++I+Q+ + F G D
Sbjct: 239 RR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSK 285
R L E PNVKW D+ G + K L+++V P+K P F + KP GIL++GPPG K
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGK 73
Query: 286 TMIAKALATESKLNFISV 303
+ +AKA+ATE+ F SV
Sbjct: 74 SYLAKAVATEANSTFFSV 91
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXX 70
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F
Sbjct: 58 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 117
Query: 71 XXXXX--XXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128
G S+ RR+ + L+ Q++ + V++L T +D
Sbjct: 118 NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 177
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
++R R ++ I +P+P R + + P L+ + + + +T G+ G D
Sbjct: 178 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 232
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPP-RGILMFGPPGCSKT 286
+++E PNVKWSD+ G + K L+++V P+K P F G + P RGIL+FGPPG K+
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKS 181
Query: 287 MIAKALATESKLN-FISV 303
+AKA+ATE+ + F S+
Sbjct: 182 YLAKAVATEANNSTFFSI 199
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVV-IQVADMFSKFYGEAEFRLKAAFXXXXXXXX 73
GIL++G GTGK+ L ++A+ T I +D+ SK+ GE+E +K F
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 74 XXXXXXXXXXXCTGR--NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSL 131
C R N S+ RR+ + + Q+ + +++L T +D ++
Sbjct: 229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 288
Query: 132 RTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
R R ++ I +P+P RAA+ L +SL+ Q++ T G+ G D
Sbjct: 289 RR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGAD 340
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
+VP+ + +GG + ++++ +E P+KHPE F LGI P+G++++GPPG KT++A+
Sbjct: 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200
Query: 291 ALATESKLNFISV 303
A+A + FI V
Sbjct: 201 AVAHHTDCKFIRV 213
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 9/187 (4%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
+S G+ + G+++YG GTGKT L ++A H + + A++ K+ GE ++
Sbjct: 174 FESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVREL 233
Query: 65 FXXXXXXX------XXXXXXXXXXXXCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLL 118
F +G S+ +R +L L+ Q+D + +++
Sbjct: 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE-LLNQLDGFETSKNIKIIM 292
Query: 119 AVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFIT 178
A T LD +D +L PGR+D++IE P PS RA IL K+ + + +++VA
Sbjct: 293 A-TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN-LRKVAEKM 350
Query: 179 HGFVGGD 185
+G G D
Sbjct: 351 NGCSGAD 357
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPP-RGILMFGPPGCSKT 286
+++E PNVKWSD+ G + K L+++V P+K P F G + P RGIL+FGPPG K+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT--GKRTPWRGILLFGPPGTGKS 59
Query: 287 MIAKALATES 296
+AKA+ATE+
Sbjct: 60 YLAKAVATEA 69
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVV-IQVADMFSKFYGEAEFRLKAAFXXXXXXXX 73
GIL++G GTGK+ L ++A+ T I +D+ SK+ GE+E +K F
Sbjct: 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 106
Query: 74 XXXXXXXXXXXCTGR--NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSL 131
C R N S+ RR+ + + Q+ + +++L T +D ++
Sbjct: 107 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166
Query: 132 RTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
R R ++ I +P+P RAA+ L +SL+ +++ T G+ G D
Sbjct: 167 RR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES 296
++D+ G DE K ++ + VE+ L+ P F +LG K P+G+LM GPPG KT++AKA+A E+
Sbjct: 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 297 KLNFISV 303
K+ F ++
Sbjct: 70 KVPFFTI 76
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 11/188 (5%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
Q G K G+L+ G GTGKT L ++A KV I +D F G R++
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96
Query: 65 FXXXXXXXXXXXXXXXXXXXCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVL 117
F GR R D+ + L+ ++ ++D E +++
Sbjct: 97 F--EQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIV 153
Query: 118 LAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFI 177
+A T D +D +L PGR D+++ + +P R IL + +VP + D +A
Sbjct: 154 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA-AIIARG 212
Query: 178 THGFVGGD 185
T GF G D
Sbjct: 213 TPGFSGAD 220
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E P +SD+GG D+ +L +++ P+K + F +GI+ P+G LM+GPPG KT++A+
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
Query: 291 ALATESKLNFISV 303
A A ++ F+ +
Sbjct: 234 ACAAQTNATFLKL 246
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 17/186 (9%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G++ G L+YG GTGKT L + A+ + + + + GE ++ AF
Sbjct: 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA 270
Query: 69 XXXXXXXXXXXXXXXXCTGRNRSDQE-----RRLLSCLVTQVDRLHELQACVVLLAVTTS 123
T R S++ +R + L+ Q+D V +LA T
Sbjct: 271 KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNR 329
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS--LSTD---QIQQVAFIT 178
+D +D +L GRLD++IE P+PS D RA IL HS ++TD Q++A T
Sbjct: 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI------HSRKMTTDDDINWQELARST 383
Query: 179 HGFVGG 184
F G
Sbjct: 384 DEFNGA 389
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 225 MRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCS 284
M +++ VK+ DI GQD K L++ V P PE F L P RG+L+FGPPG
Sbjct: 102 MNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNG 160
Query: 285 KTMIAKALATESKLNFISV 303
KTM+AKA+A ES F ++
Sbjct: 161 KTMLAKAVAAESNATFFNI 179
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 27/233 (11%)
Query: 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXXXX 72
G+L++G G GKT L ++A+ I A + SK+ GE E ++A F
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ 207
Query: 73 XXXXXXXXXXXXCTGRNRS--DQERRLLSCLVTQVDRLHEL-QACVVLLAVTTSLDNVDV 129
R D RRL + + + D + V+++ T +D
Sbjct: 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267
Query: 130 S-LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDXXX 188
+ LR R + + + +P+ + R +L LL K L+ ++ Q+A +T G+ G D
Sbjct: 268 AVLR---RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT- 323
Query: 189 XXXXXXXXXXVETEGTGQVLSYDGVMRALDHVKPSAMRQVLV-EVPNVKWSDI 240
L+ D + + +KP ++ + E+ N++ SD
Sbjct: 324 ------------------ALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDF 358
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALA 293
V+W+DI GQD K L++ V P PE F L P +G+L+FGPPG KT++A+A+A
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVA 75
Query: 294 TESKLNFISV 303
TE F+++
Sbjct: 76 TECSATFLNI 85
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 8/178 (4%)
Query: 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXXXXXX 72
G+L++G G GKT L ++A+ + I A + SK+ G+ E ++A F
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ 113
Query: 73 XXXXXXXXXXXXCTGRNRSDQE--RRLLSCLVTQVDRL--HELQACVVLLAVTTSLDNVD 128
+ R+ S+ E RRL + + + D L + +V+LA T +D
Sbjct: 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173
Query: 129 -VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
+LR R + + + +P R +L+ LL K L T+ ++++A IT G+ G D
Sbjct: 174 EAALR---RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSD 228
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 8/83 (9%)
Query: 221 KPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGP 280
KPS ++V + D+GG +E +L++ VE+ LK P F R+G + P+GIL+ GP
Sbjct: 6 KPSGNKRV-------TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGP 57
Query: 281 PGCSKTMIAKALATESKLNFISV 303
PG KT++A+A+A E+ + F +
Sbjct: 58 PGTGKTLLARAVAGEANVPFFHI 80
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 13/185 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + GIL+ G GTGKT L ++A V I +D F G R++ F
Sbjct: 45 GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLF--A 102
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR+R D+ + L+ L+ ++D + +V +A T
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV-MAAT 161
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFITHG 180
D +D +L PGR D++I + P R IL P L+ D ++ +A T G
Sbjct: 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPG 219
Query: 181 FVGGD 185
FVG D
Sbjct: 220 FVGAD 224
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 8/83 (9%)
Query: 221 KPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGP 280
KPS ++V + D+GG +E +L++ VE+ LK P F R+G + P+GIL+ GP
Sbjct: 6 KPSGNKRV-------TFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGP 57
Query: 281 PGCSKTMIAKALATESKLNFISV 303
PG T++A+A+A E+ + F +
Sbjct: 58 PGTGATLLARAVAGEANVPFFHI 80
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 13/185 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + GIL+ G GTG T L ++A V I +D F G R++ F
Sbjct: 45 GARMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLF--A 102
Query: 69 XXXXXXXXXXXXXXXXCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR+R D+ + L+ L+ ++D + +V +A T
Sbjct: 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV-MAAT 161
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFITHG 180
D +D +L PGR D++I + P R IL P L+ D ++ +A T G
Sbjct: 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPG 219
Query: 181 FVGGD 185
FVG D
Sbjct: 220 FVGAD 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKT 286
+VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 29 RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 287 MIAKALATESKLNFIS 302
+A+A+A E+++ FI+
Sbjct: 88 HLARAVAGEARVPFIT 103
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + G+L+ G G GKT L ++A +V + +D F G R++ F
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 69 XXXXXXXXXXXXXXXXCTGRNR-------SDQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR R +D+ + L+ L+ ++D E +V++A T
Sbjct: 129 KRHAPCIVFIDEID--AVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAAT 185
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF 181
D +D +L PGR D++I + P R IL P + D + +A T GF
Sbjct: 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGF 244
Query: 182 VGGD 185
VG D
Sbjct: 245 VGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKT 286
+VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 20 RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 78
Query: 287 MIAKALATESKLNFIS 302
+A+A+A E+++ FI+
Sbjct: 79 HLARAVAGEARVPFIT 94
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + G+L+ G G GKT L ++A +V + +D F G R++ F
Sbjct: 60 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 119
Query: 69 XXXXXXXXXXXXXXXXCTGRNR-------SDQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR R +D+ + L+ L+ ++D E +V++A T
Sbjct: 120 KRHAPCIVFIDEID--AVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAAT 176
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF 181
D +D +L PGR D++I + P R IL P + D + +A T GF
Sbjct: 177 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGF 235
Query: 182 VGGD 185
VG D
Sbjct: 236 VGAD 239
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKT 286
+VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 29 RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 287 MIAKALATESKLNFISV 303
+A+A+A E+++ FI+
Sbjct: 88 HLARAVAGEARVPFITA 104
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + G+L+ G G GKT L ++A +V + +D F G R++ F
Sbjct: 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 128
Query: 69 XXXXXXXXXXXXXXXXCTGRNR-------SDQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR R +D+ + L+ L+ ++D E +V++A T
Sbjct: 129 KRHAPCIVFIDEID--AVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAAT 185
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF 181
D +D +L PGR D++I + P R IL P + D + +A T GF
Sbjct: 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGF 244
Query: 182 VGGD 185
VG D
Sbjct: 245 VGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64
Query: 288 IAKALATESKLNFIS 302
+A+A+A E+++ FI+
Sbjct: 65 LARAVAGEARVPFIT 79
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 11/184 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFXXX 68
G + G+L+ G G GKT L ++A +V + +D F G R++ F
Sbjct: 45 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETA 104
Query: 69 XXXXXXXXXXXXXXXXCTGRNR-------SDQERRLLSCLVTQVDRLHELQACVVLLAVT 121
GR R +D+ + L+ L+ ++D E +V++A T
Sbjct: 105 KRHAPCIVFIDEID--AVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAAT 161
Query: 122 TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF 181
D +D +L PGR D++I + P R IL P + D + +A T GF
Sbjct: 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGF 220
Query: 182 VGGD 185
VG D
Sbjct: 221 VGAD 224
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 251 RQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
R ++ PL+H P+ ILM GP G KT IA+ LA + FI V+
Sbjct: 37 RMQLQEPLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 251 RQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
R ++ PL+H P+ ILM GP G KT IA+ LA + FI V+
Sbjct: 37 RMQLQEPLRHE--------VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ +K KLR +E A+ +P +L+FGPPG KT +A +A E +N
Sbjct: 16 GQERLKQKLRVYLEA--------AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ +K KLR +E A+ +P +L+FGPPG KT +A +A E +N
Sbjct: 16 GQERLKQKLRVYLEA--------AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ +K KLR +E A+ +P +L+FGPPG KT +A +A E +N
Sbjct: 16 GQERLKQKLRVYLEA--------AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
P+ ILM GP G KT IA+ LA + FI V+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
P+ ILM GP G KT IA+ LA + FI V+
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 88
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
P+ ILM GP G KT IA+ LA + FI V+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMF 50
I+ G NG+GKT+ I LA+ +K H +VVI +D F
Sbjct: 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 258 LKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298
+KH + F L + RGI++ GPPG KTMI S L
Sbjct: 1035 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSL 1074
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 258 LKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298
+KH + F L + RGI++ GPPG KTMI S L
Sbjct: 1254 IKHEKIFYDL-LNSKRGIILCGPPGSGKTMIMNNALRNSSL 1293
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMF 50
I G NG+GKT+ I LA+ +K H +VVI +D F
Sbjct: 132 IXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1
INITIATORS Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHM 37
+K N I IYG+ GTGKT+++ + S +
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 273 RGILMFGPPGCSKTMIAKALATE--SKLNF 300
R +L+ GPPG KT +A A+A E SK+ F
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPF 107
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG KT +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA--DMFSKFYGE 56
++I GVNG GKT+ + LA+ K V + +A D F GE
Sbjct: 119 LMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGE 161
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG KT +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG KT +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 273 RGILMFGPPGCSKTMIAKALATE--SKLNF 300
R +L+ GPPG KT +A A+A E SK+ F
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPF 93
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG KT +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG KT +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGKTTLAHIIASELQTNI 79
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
+ N ++ GVNGTGKT+ + +A++ + V+I AD F
Sbjct: 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMF 50
G +K I+I GVNG GKT+ + LA +K V++ D F
Sbjct: 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ VK KL ++E E +L+ GPPG +T +A +A+E + N
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------VLLAGPPGLGRTTLAHIIASELQTNI 79
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMF 50
G +K I+I GVNG GKT+ + LA +K V++ D F
Sbjct: 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSK 52
N I IYG GTGKT L+ + + K + V+ AD F++
Sbjct: 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
T++D V V L P R Q++ LPV SRD + L + H L +D
Sbjct: 248 ATAIDQVQVELPMPNR--QQVWLPVESRDVQVGANMSLGIRPEHLLPSD 294
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
T++D V V L P R Q++ LPV SRD + L + H L +D
Sbjct: 248 ATAIDQVQVELPMPNR--QQVWLPVESRDVQVGANMSLGIRPEHLLPSD 294
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
T++D V V L P R Q++ LPV SRD + L + H L +D
Sbjct: 267 ATAIDQVQVELPMPNR--QQVWLPVESRDVQVGANMSLGIRPEHLLPSD 313
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 121 TTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
T++D V V L P R Q++ LPV SRD + L + H L +D
Sbjct: 248 ATAIDQVQVELPMPNR--QQVWLPVESRDVQVGANMSLGIRPEHLLPSD 294
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSK 52
N I IYG GTGKT L+ + + K + V+ AD F++
Sbjct: 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSK 52
N I IYG GTGKT L+ + + K + V+ AD F++
Sbjct: 37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 77
>pdb|2WVM|A Chain A, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
pdb|2WVM|B Chain B, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
Length = 391
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 105 VDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLD--------QEIELPVPSRDQRAAILH 156
V RLHE+Q + L + ++ V LR RLD ++ + VP+R++R +L
Sbjct: 14 VVRLHEVQRILELDSGRVRDESPAVGLR---RLDDADLRDVLEQTAIVVPTRNERLKLLE 70
Query: 157 CLLTKVPHS 165
+L+ +PH
Sbjct: 71 GVLSGIPHE 79
>pdb|2WVK|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVK|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVL|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
pdb|2WVL|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
Length = 391
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 11/69 (15%)
Query: 105 VDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLD--------QEIELPVPSRDQRAAILH 156
V RLHE+Q + L + ++ V LR RLD ++ + VP+R++R +L
Sbjct: 14 VVRLHEVQRILELDSGRVRDESPAVGLR---RLDDADLRDVLEQTAIVVPTRNERLKLLE 70
Query: 157 CLLTKVPHS 165
+L+ +PH
Sbjct: 71 GVLSGIPHE 79
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 265 ARLGIKPPR----GILMFGPPGCSKTMIAKALAT 294
AR G+K P L GP G KT +AK LA
Sbjct: 577 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK 38
++K N + +G NG GKT+L+ ++++++K
Sbjct: 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 265 ARLGIKPPR----GILMFGPPGCSKTMIAKALAT 294
AR G+K P L GP G KT +AK LA
Sbjct: 36 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 69
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 265 ARLGIKPPR----GILMFGPPGCSKTMIAKALAT 294
AR G+K P L GP G KT +AK LA
Sbjct: 33 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,687,467
Number of Sequences: 62578
Number of extensions: 274840
Number of successful extensions: 1040
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 132
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)