Query psy5649
Match_columns 305
No_of_seqs 241 out of 2423
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 23:06:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 9.3E-71 2E-75 474.4 28.4 302 2-304 212-577 (802)
2 KOG0730|consensus 100.0 2.1E-61 4.5E-66 421.5 25.8 291 3-304 208-500 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 1E-49 2.2E-54 374.6 31.4 300 3-304 202-519 (733)
4 KOG0735|consensus 100.0 3E-48 6.5E-53 340.2 28.7 295 10-304 428-733 (952)
5 KOG0736|consensus 100.0 1.4E-47 3E-52 338.8 23.8 287 13-304 431-737 (953)
6 COG1222 RPT1 ATP-dependent 26S 100.0 7.5E-43 1.6E-47 285.6 20.9 215 3-222 175-394 (406)
7 KOG0730|consensus 100.0 7.9E-41 1.7E-45 292.8 20.2 218 3-223 458-677 (693)
8 KOG0733|consensus 100.0 4E-40 8.7E-45 285.1 21.0 220 2-223 534-772 (802)
9 KOG0741|consensus 100.0 2.6E-40 5.5E-45 282.1 13.1 291 3-303 246-569 (744)
10 COG0464 SpoVK ATPases of the A 100.0 4.5E-37 9.7E-42 278.4 28.3 298 2-305 7-309 (494)
11 KOG0734|consensus 100.0 1.1E-36 2.4E-41 260.2 17.9 211 5-220 329-541 (752)
12 KOG0738|consensus 100.0 2.9E-36 6.3E-41 248.8 17.7 213 10-225 242-474 (491)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 4.5E-35 9.8E-40 259.4 22.7 213 5-224 251-467 (489)
14 COG1223 Predicted ATPase (AAA+ 100.0 7.5E-35 1.6E-39 228.7 16.9 208 8-222 146-357 (368)
15 PTZ00454 26S protease regulato 100.0 6.8E-34 1.5E-38 247.0 23.0 215 3-222 169-388 (398)
16 KOG0731|consensus 100.0 1.8E-34 3.9E-39 260.2 20.0 214 3-220 334-553 (774)
17 KOG0739|consensus 100.0 4.3E-35 9.2E-40 234.3 13.4 189 10-200 163-353 (439)
18 KOG0736|consensus 100.0 9.5E-34 2.1E-38 251.4 20.4 217 8-225 700-937 (953)
19 KOG0727|consensus 100.0 1.1E-33 2.4E-38 221.5 16.9 214 3-221 179-397 (408)
20 TIGR01243 CDC48 AAA family ATP 100.0 3.7E-33 8.1E-38 262.8 23.8 220 3-224 477-714 (733)
21 PRK03992 proteasome-activating 100.0 5.4E-33 1.2E-37 242.8 22.7 220 3-227 155-379 (389)
22 KOG0728|consensus 100.0 3E-33 6.4E-38 218.9 17.6 215 2-221 170-389 (404)
23 COG0464 SpoVK ATPases of the A 100.0 2.1E-32 4.6E-37 247.9 23.3 218 3-223 266-486 (494)
24 PTZ00361 26 proteosome regulat 100.0 2.1E-32 4.5E-37 239.0 21.5 214 3-221 207-425 (438)
25 KOG0735|consensus 100.0 1.3E-32 2.8E-37 242.3 19.1 197 2-200 690-888 (952)
26 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.6E-32 7.8E-37 261.8 20.9 212 4-222 1621-1879(2281)
27 KOG0652|consensus 100.0 1.4E-32 3E-37 216.4 14.5 215 3-222 195-414 (424)
28 TIGR01241 FtsH_fam ATP-depende 100.0 7.7E-32 1.7E-36 243.4 20.9 213 4-221 79-296 (495)
29 KOG0726|consensus 100.0 6.9E-33 1.5E-37 221.0 11.2 214 2-220 208-426 (440)
30 COG0465 HflB ATP-dependent Zn 100.0 1.1E-31 2.5E-36 238.1 17.1 211 5-220 175-390 (596)
31 KOG0737|consensus 100.0 2.1E-31 4.5E-36 219.7 16.4 189 10-201 124-315 (386)
32 CHL00176 ftsH cell division pr 100.0 1.2E-30 2.5E-35 238.3 20.3 211 5-220 208-423 (638)
33 PLN00020 ribulose bisphosphate 100.0 2.5E-30 5.4E-35 215.6 20.4 188 3-194 138-348 (413)
34 TIGR01242 26Sp45 26S proteasom 100.0 5.7E-30 1.2E-34 223.1 22.3 213 3-220 146-363 (364)
35 TIGR02639 ClpA ATP-dependent C 100.0 9.3E-30 2E-34 239.1 24.1 287 3-305 193-517 (731)
36 TIGR03689 pup_AAA proteasome A 100.0 9.1E-30 2E-34 225.3 22.2 185 3-194 206-407 (512)
37 KOG0729|consensus 100.0 1.1E-30 2.4E-35 206.2 13.9 215 3-222 201-420 (435)
38 KOG0732|consensus 100.0 3.3E-30 7.1E-35 238.6 18.8 287 3-296 289-616 (1080)
39 PRK10733 hflB ATP-dependent me 100.0 1.5E-29 3.2E-34 233.7 21.8 211 5-220 177-392 (644)
40 KOG0740|consensus 100.0 1.5E-29 3.3E-34 216.0 14.5 211 11-223 184-407 (428)
41 PRK11034 clpA ATP-dependent Cl 100.0 5.3E-28 1.2E-32 224.5 23.8 287 3-305 197-521 (758)
42 KOG0651|consensus 100.0 1.5E-29 3.3E-34 203.5 11.6 214 3-221 156-374 (388)
43 CHL00095 clpC Clp protease ATP 99.9 7.3E-25 1.6E-29 208.3 25.0 184 2-194 189-398 (821)
44 TIGR03345 VI_ClpV1 type VI sec 99.9 6.7E-24 1.4E-28 200.9 24.9 171 3-182 198-390 (852)
45 PRK10865 protein disaggregatio 99.9 1.6E-23 3.4E-28 199.0 21.6 170 3-181 189-380 (857)
46 KOG0742|consensus 99.9 9.3E-24 2E-28 176.3 15.7 184 12-198 383-593 (630)
47 TIGR03346 chaperone_ClpB ATP-d 99.9 1.1E-22 2.4E-27 194.0 25.2 172 2-182 183-376 (852)
48 CHL00195 ycf46 Ycf46; Provisio 99.9 4.3E-22 9.4E-27 176.9 25.0 251 30-304 32-291 (489)
49 PF00004 AAA: ATPase family as 99.9 3.5E-23 7.6E-28 155.0 14.6 129 16-145 1-132 (132)
50 KOG0743|consensus 99.9 1.6E-21 3.5E-26 165.8 15.1 181 2-192 224-415 (457)
51 COG0542 clpA ATP-binding subun 99.9 3E-20 6.5E-25 169.9 22.3 172 2-181 180-372 (786)
52 COG1222 RPT1 ATP-dependent 26S 99.9 1.7E-21 3.6E-26 160.6 8.0 74 230-303 143-216 (406)
53 CHL00181 cbbX CbbX; Provisiona 99.8 1.5E-19 3.3E-24 151.4 18.8 189 3-199 46-256 (287)
54 TIGR02880 cbbX_cfxQ probable R 99.8 4.6E-19 1E-23 148.7 18.9 188 3-198 45-254 (284)
55 TIGR02881 spore_V_K stage V sp 99.8 3.2E-18 6.9E-23 142.7 18.8 155 13-176 42-208 (261)
56 COG2884 FtsE Predicted ATPase 99.8 1.6E-21 3.6E-26 147.0 -1.7 180 7-238 22-201 (223)
57 TIGR03269 met_CoM_red_A2 methy 99.8 2.2E-21 4.7E-26 177.3 -2.2 130 158-296 161-334 (520)
58 COG1123 ATPase components of v 99.8 1.5E-20 3.2E-25 165.5 2.6 242 7-296 29-341 (539)
59 COG1126 GlnQ ABC-type polar am 99.8 2.3E-21 5E-26 149.5 -4.5 177 7-237 22-199 (240)
60 PRK10762 D-ribose transporter 99.8 2.1E-21 4.6E-26 176.5 -5.7 129 160-297 136-303 (501)
61 PRK09700 D-allose transporter 99.8 2.9E-21 6.3E-26 176.1 -5.0 129 160-297 140-314 (510)
62 KOG0744|consensus 99.8 2.4E-18 5.1E-23 140.0 12.3 148 11-161 175-342 (423)
63 PRK10938 putative molybdenum t 99.8 2.8E-20 6E-25 169.0 1.2 130 158-296 128-310 (490)
64 PRK15134 microcin C ABC transp 99.8 3.5E-21 7.7E-26 176.2 -6.8 129 159-296 150-336 (529)
65 COG0488 Uup ATPase components 99.8 3.1E-19 6.7E-24 159.9 5.6 68 161-240 149-216 (530)
66 COG1245 Predicted ATPase, RNas 99.8 2.5E-19 5.5E-24 152.0 4.7 238 11-297 98-392 (591)
67 PRK13549 xylose transporter AT 99.8 3.8E-21 8.2E-26 175.1 -7.6 128 160-296 138-312 (506)
68 PRK11288 araG L-arabinose tran 99.8 8.4E-21 1.8E-25 172.6 -7.3 129 160-297 135-304 (501)
69 PRK10982 galactose/methyl gala 99.7 1.3E-20 2.7E-25 171.2 -6.4 128 160-296 129-298 (491)
70 PRK10261 glutathione transport 99.7 4.6E-21 9.9E-26 178.0 -9.8 68 158-234 161-229 (623)
71 KOG0727|consensus 99.7 2.4E-18 5.2E-23 135.7 6.9 74 231-304 148-221 (408)
72 PRK15439 autoinducer 2 ABC tra 99.7 1.4E-20 3.1E-25 171.3 -6.6 129 159-296 134-313 (510)
73 COG3839 MalK ABC-type sugar tr 99.7 3.2E-20 6.8E-25 155.9 -4.5 171 7-234 23-194 (338)
74 COG1117 PstB ABC-type phosphat 99.7 6.3E-19 1.4E-23 135.7 1.3 180 7-236 27-210 (253)
75 COG1122 CbiO ABC-type cobalt t 99.7 3.3E-20 7.1E-25 149.9 -6.7 180 7-239 24-204 (235)
76 TIGR02633 xylG D-xylose ABC tr 99.7 3.6E-20 7.8E-25 168.7 -7.3 127 162-297 138-311 (500)
77 COG2256 MGS1 ATPase related to 99.7 1.7E-16 3.7E-21 133.3 14.6 153 10-186 45-210 (436)
78 PF05496 RuvB_N: Holliday junc 99.7 5.5E-16 1.2E-20 122.0 16.0 161 13-193 50-225 (233)
79 COG1120 FepC ABC-type cobalami 99.7 7E-18 1.5E-22 136.6 4.9 170 7-235 22-200 (258)
80 COG1136 SalX ABC-type antimicr 99.7 3E-19 6.4E-24 141.7 -3.0 178 7-234 25-203 (226)
81 KOG0737|consensus 99.7 1.3E-17 2.9E-22 138.4 5.8 76 230-305 84-160 (386)
82 COG3842 PotA ABC-type spermidi 99.7 1E-18 2.2E-23 147.7 -1.7 171 7-234 25-197 (352)
83 PRK10636 putative ABC transpor 99.7 3.3E-18 7.2E-23 159.2 1.3 66 159-236 143-208 (638)
84 COG1124 DppF ABC-type dipeptid 99.7 6.8E-19 1.5E-23 138.6 -2.8 175 7-236 27-204 (252)
85 KOG0729|consensus 99.7 5.7E-17 1.2E-21 128.9 7.5 74 230-303 169-242 (435)
86 KOG0739|consensus 99.7 2.4E-17 5.3E-22 132.9 5.5 79 225-304 120-198 (439)
87 PRK15064 ABC transporter ATP-b 99.7 1.4E-17 3.1E-22 152.5 3.9 63 161-235 151-213 (530)
88 PRK13409 putative ATPase RIL; 99.7 6.4E-17 1.4E-21 148.6 7.8 68 158-235 205-272 (590)
89 COG1116 TauB ABC-type nitrate/ 99.7 1.4E-18 3E-23 138.1 -2.7 168 7-234 23-191 (248)
90 PTZ00454 26S protease regulato 99.7 7.2E-17 1.6E-21 140.8 7.7 75 230-304 137-211 (398)
91 TIGR00763 lon ATP-dependent pr 99.7 1.7E-15 3.6E-20 143.9 17.4 198 12-218 346-584 (775)
92 PRK00080 ruvB Holliday junctio 99.7 1E-14 2.2E-19 125.7 20.4 187 11-220 49-250 (328)
93 COG1135 AbcC ABC-type metal io 99.7 7.4E-19 1.6E-23 142.8 -5.0 182 7-240 26-208 (339)
94 KOG0738|consensus 99.7 9.1E-17 2E-21 133.9 6.9 78 226-304 200-277 (491)
95 PLN03073 ABC transporter F fam 99.7 4.1E-17 9E-22 152.6 5.2 67 159-237 338-404 (718)
96 COG1127 Ttg2A ABC-type transpo 99.7 4.8E-18 1E-22 133.3 -1.2 183 7-240 28-212 (263)
97 PRK11147 ABC transporter ATPas 99.7 3.9E-18 8.5E-23 159.0 -2.5 64 160-235 151-214 (635)
98 TIGR00635 ruvB Holliday juncti 99.7 2.3E-14 5.1E-19 122.6 20.4 185 12-219 29-228 (305)
99 KOG0927|consensus 99.7 6.9E-17 1.5E-21 140.0 4.7 74 156-240 212-285 (614)
100 PRK11819 putative ABC transpor 99.6 8.3E-17 1.8E-21 148.1 4.8 64 160-235 158-221 (556)
101 COG1125 OpuBA ABC-type proline 99.6 2E-17 4.4E-22 130.7 -0.2 175 7-235 21-197 (309)
102 KOG0731|consensus 99.6 3.8E-16 8.2E-21 142.3 7.3 71 233-304 306-376 (774)
103 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 4.2E-16 9E-21 143.5 7.0 64 160-235 156-219 (552)
104 PRK03992 proteasome-activating 99.6 5.3E-16 1.1E-20 136.1 7.1 76 229-304 122-197 (389)
105 COG3638 ABC-type phosphate/pho 99.6 8.2E-18 1.8E-22 131.7 -3.9 77 146-232 129-206 (258)
106 KOG0728|consensus 99.6 7.4E-16 1.6E-20 121.6 6.9 73 232-304 141-213 (404)
107 KOG0652|consensus 99.6 5.7E-16 1.2E-20 122.9 5.9 73 230-302 163-235 (424)
108 KOG0726|consensus 99.6 4.9E-16 1.1E-20 125.0 5.5 71 233-303 180-250 (440)
109 PRK06893 DNA replication initi 99.6 3.6E-14 7.7E-19 115.8 16.3 150 14-180 40-195 (229)
110 COG4619 ABC-type uncharacteriz 99.6 3.7E-16 8.1E-21 115.9 3.5 169 7-234 23-194 (223)
111 COG1118 CysA ABC-type sulfate/ 99.6 2.2E-16 4.8E-21 128.2 1.9 175 7-235 22-199 (345)
112 COG4172 ABC-type uncharacteriz 99.6 7.3E-18 1.6E-22 141.3 -7.0 69 158-235 150-219 (534)
113 PTZ00361 26 proteosome regulat 99.6 1.9E-15 4.1E-20 132.8 7.6 74 231-304 176-249 (438)
114 COG1121 ZnuC ABC-type Mn/Zn tr 99.6 1.3E-16 2.9E-21 128.5 0.3 80 147-236 122-201 (254)
115 TIGR03689 pup_AAA proteasome A 99.6 1.4E-15 3.1E-20 135.4 6.9 71 229-299 173-243 (512)
116 PRK04195 replication factor C 99.6 8.7E-14 1.9E-18 125.8 18.1 160 13-195 39-205 (482)
117 PRK00149 dnaA chromosomal repl 99.6 5.2E-14 1.1E-18 126.3 16.2 191 14-220 149-349 (450)
118 COG2255 RuvB Holliday junction 99.6 1.5E-13 3.2E-18 110.7 16.7 165 13-198 52-232 (332)
119 KOG2028|consensus 99.6 1.1E-13 2.5E-18 114.9 16.3 186 11-220 160-368 (554)
120 PRK13342 recombination factor 99.6 4.6E-13 9.9E-18 118.9 20.8 158 11-193 34-200 (413)
121 TIGR00362 DnaA chromosomal rep 99.6 1E-13 2.2E-18 122.9 16.5 191 13-220 136-337 (405)
122 TIGR03420 DnaA_homol_Hda DnaA 99.6 1.9E-13 4.2E-18 111.8 16.4 169 10-199 35-211 (226)
123 KOG0734|consensus 99.6 4E-15 8.6E-20 128.8 6.4 68 234-302 300-367 (752)
124 TIGR00960 3a0501s02 Type II (G 99.6 4.1E-17 8.8E-22 132.5 -5.8 69 158-235 131-199 (216)
125 TIGR02902 spore_lonB ATP-depen 99.6 2.9E-13 6.3E-18 123.1 18.5 191 11-218 84-330 (531)
126 COG3840 ThiQ ABC-type thiamine 99.6 7.6E-16 1.7E-20 115.8 0.8 170 8-234 20-190 (231)
127 PRK07003 DNA polymerase III su 99.5 1.8E-12 3.9E-17 118.8 22.2 160 13-194 38-225 (830)
128 PRK10787 DNA-binding ATP-depen 99.5 1.1E-12 2.4E-17 123.8 21.7 200 11-220 347-582 (784)
129 TIGR01242 26Sp45 26S proteasom 99.5 9.1E-15 2E-19 127.8 7.2 75 230-304 114-188 (364)
130 PRK14962 DNA polymerase III su 99.5 9.4E-13 2E-17 117.5 20.1 147 13-180 36-210 (472)
131 PRK11650 ugpC glycerol-3-phosp 99.5 4.9E-17 1.1E-21 140.6 -7.0 172 7-235 24-196 (356)
132 TIGR01166 cbiO cobalt transpor 99.5 1.9E-16 4.1E-21 126.0 -3.3 68 158-234 120-187 (190)
133 PRK14956 DNA polymerase III su 99.5 2.9E-13 6.3E-18 119.1 16.1 159 13-193 40-226 (484)
134 TIGR02314 ABC_MetN D-methionin 99.5 2.5E-17 5.4E-22 141.4 -9.2 69 158-235 133-202 (343)
135 PRK00411 cdc6 cell division co 99.5 1.4E-12 3E-17 115.7 20.8 199 12-222 54-284 (394)
136 TIGR02928 orc1/cdc6 family rep 99.5 8.9E-13 1.9E-17 115.8 19.2 199 11-221 38-275 (365)
137 COG0466 Lon ATP-dependent Lon 99.5 3.5E-13 7.6E-18 121.1 16.5 205 12-221 349-585 (782)
138 PRK14088 dnaA chromosomal repl 99.5 2.3E-13 5.1E-18 121.1 15.1 192 13-220 130-332 (440)
139 COG4555 NatA ABC-type Na+ tran 99.5 1.6E-16 3.5E-21 121.3 -4.3 175 7-238 22-197 (245)
140 PRK11432 fbpC ferric transport 99.5 1.2E-16 2.7E-21 137.8 -5.7 69 158-235 129-198 (351)
141 PRK13651 cobalt transporter AT 99.5 1.3E-16 2.9E-21 135.3 -5.9 70 157-235 157-226 (305)
142 cd03292 ABC_FtsE_transporter F 99.5 1.1E-16 2.3E-21 130.0 -6.6 69 158-235 129-197 (214)
143 PRK06645 DNA polymerase III su 99.5 1.3E-12 2.9E-17 117.0 19.0 162 13-196 43-236 (507)
144 PRK12402 replication factor C 99.5 2.3E-12 5.1E-17 111.9 19.8 182 14-219 37-248 (337)
145 PRK14961 DNA polymerase III su 99.5 2.3E-12 5E-17 112.4 19.3 160 13-194 38-225 (363)
146 KOG0651|consensus 99.5 1.8E-14 3.9E-19 117.1 5.4 70 234-303 128-197 (388)
147 PRK13643 cbiO cobalt transport 99.5 5.5E-16 1.2E-20 131.0 -3.5 69 158-235 137-205 (288)
148 PRK09452 potA putrescine/sperm 99.5 2.2E-16 4.8E-21 137.2 -6.1 70 157-235 136-206 (375)
149 TIGR03258 PhnT 2-aminoethylpho 99.5 1.8E-16 3.8E-21 137.2 -6.8 69 158-235 130-200 (362)
150 TIGR02673 FtsE cell division A 99.5 1.6E-16 3.5E-21 128.8 -6.8 70 158-236 130-199 (214)
151 PRK12422 chromosomal replicati 99.5 7.3E-13 1.6E-17 117.6 15.8 194 14-220 142-343 (445)
152 COG1223 Predicted ATPase (AAA+ 99.5 2.2E-14 4.9E-19 113.8 5.5 68 233-304 116-183 (368)
153 PTZ00112 origin recognition co 99.5 2E-12 4.3E-17 119.4 18.6 193 13-220 781-1006(1164)
154 TIGR03265 PhnT2 putative 2-ami 99.5 2.5E-16 5.4E-21 136.1 -6.4 172 7-235 24-196 (353)
155 COG1123 ATPase components of v 99.5 7.4E-16 1.6E-20 136.1 -3.6 76 156-240 420-496 (539)
156 PRK14960 DNA polymerase III su 99.5 2.2E-12 4.8E-17 116.8 18.3 160 13-194 37-224 (702)
157 TIGR01188 drrA daunorubicin re 99.5 4.6E-16 1E-20 132.4 -5.1 70 158-236 117-186 (302)
158 PRK08084 DNA replication initi 99.5 2.5E-12 5.4E-17 105.4 17.0 162 11-192 43-212 (235)
159 PRK10908 cell division protein 99.5 3.9E-16 8.3E-21 127.3 -5.6 69 158-235 130-198 (222)
160 cd03225 ABC_cobalt_CbiO_domain 99.5 5.5E-16 1.2E-20 125.5 -4.7 69 158-235 127-195 (211)
161 PRK12323 DNA polymerase III su 99.5 1.3E-12 2.7E-17 118.2 16.2 159 13-193 38-229 (700)
162 PRK13650 cbiO cobalt transport 99.5 6.1E-16 1.3E-20 130.2 -4.8 68 158-234 133-201 (279)
163 PRK14086 dnaA chromosomal repl 99.5 2E-12 4.3E-17 116.9 17.2 191 14-220 315-515 (617)
164 COG4608 AppF ABC-type oligopep 99.5 3.5E-15 7.7E-20 120.3 -0.4 138 7-235 33-171 (268)
165 cd03214 ABC_Iron-Siderophores_ 99.5 2.1E-14 4.6E-19 113.0 3.9 140 7-235 19-159 (180)
166 PRK13638 cbiO cobalt transport 99.5 6.7E-16 1.4E-20 129.6 -5.1 69 158-235 129-197 (271)
167 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.5 8.2E-16 1.8E-20 125.1 -4.5 68 158-234 133-201 (218)
168 TIGR03608 L_ocin_972_ABC putat 99.5 8.1E-16 1.8E-20 124.0 -4.8 68 158-234 127-194 (206)
169 COG4175 ProV ABC-type proline/ 99.5 3.2E-15 7E-20 121.9 -1.3 177 7-235 48-226 (386)
170 cd03266 ABC_NatA_sodium_export 99.5 5.5E-16 1.2E-20 126.1 -5.9 69 158-235 129-197 (218)
171 TIGR01241 FtsH_fam ATP-depende 99.5 6.6E-14 1.4E-18 127.0 7.0 74 230-304 47-120 (495)
172 cd03265 ABC_DrrA DrrA is the A 99.5 8E-16 1.7E-20 125.3 -5.1 69 158-235 124-193 (220)
173 TIGR01186 proV glycine betaine 99.5 4.3E-16 9.4E-21 134.5 -7.1 70 157-235 121-191 (363)
174 PLN03025 replication factor C 99.5 2.6E-12 5.7E-17 110.3 16.2 160 14-194 35-202 (319)
175 PRK15079 oligopeptide ABC tran 99.5 2.8E-16 6E-21 134.8 -8.3 70 157-235 153-223 (331)
176 PHA02544 44 clamp loader, smal 99.5 3.7E-12 8.1E-17 109.5 16.9 161 13-194 43-211 (316)
177 PRK11000 maltose/maltodextrin 99.5 3.6E-16 7.7E-21 136.2 -8.1 69 158-235 126-195 (369)
178 PRK07764 DNA polymerase III su 99.5 7.1E-12 1.5E-16 118.4 20.0 157 14-192 38-224 (824)
179 PRK13647 cbiO cobalt transport 99.5 8.6E-16 1.9E-20 128.9 -5.6 69 158-235 131-199 (274)
180 PRK11607 potG putrescine trans 99.5 4E-16 8.7E-21 135.8 -7.9 69 158-235 142-211 (377)
181 cd03261 ABC_Org_Solvent_Resist 99.5 5.2E-16 1.1E-20 127.6 -6.8 69 158-235 129-198 (235)
182 cd03258 ABC_MetN_methionine_tr 99.5 4E-16 8.6E-21 128.2 -7.8 69 158-235 133-202 (233)
183 COG0410 LivF ABC-type branched 99.5 1.1E-14 2.5E-19 114.1 0.8 170 7-233 23-196 (237)
184 PRK14958 DNA polymerase III su 99.5 5.9E-12 1.3E-16 113.6 18.3 160 13-194 38-225 (509)
185 PRK08727 hypothetical protein; 99.5 1E-11 2.2E-16 101.6 18.1 148 13-180 41-196 (233)
186 TIGR02315 ABC_phnC phosphonate 99.5 1.5E-15 3.4E-20 125.6 -4.5 69 158-235 138-207 (243)
187 PF00308 Bac_DnaA: Bacterial d 99.5 4.6E-12 1E-16 102.5 15.8 167 14-193 35-212 (219)
188 PRK13537 nodulation ABC transp 99.5 8.6E-16 1.9E-20 130.7 -6.3 70 158-236 131-200 (306)
189 PRK14964 DNA polymerase III su 99.5 5.8E-12 1.3E-16 112.1 17.7 161 13-195 35-223 (491)
190 cd03226 ABC_cobalt_CbiO_domain 99.5 1.1E-15 2.3E-20 123.1 -5.6 69 158-235 119-187 (205)
191 PRK11153 metN DL-methionine tr 99.5 2.8E-16 6.1E-21 135.7 -9.5 69 158-235 133-202 (343)
192 cd03262 ABC_HisP_GlnQ_permease 99.5 1.3E-15 2.7E-20 123.5 -5.2 69 158-235 128-196 (213)
193 cd03224 ABC_TM1139_LivF_branch 99.5 2.1E-15 4.6E-20 123.0 -4.0 69 158-235 125-193 (222)
194 PRK13637 cbiO cobalt transport 99.5 1.7E-15 3.7E-20 127.9 -4.7 69 158-235 137-206 (287)
195 PRK13341 recombination factor 99.4 7E-12 1.5E-16 117.1 18.7 156 12-192 51-220 (725)
196 cd03259 ABC_Carb_Solutes_like 99.4 8.5E-16 1.8E-20 124.5 -6.4 69 158-235 123-192 (213)
197 PRK10851 sulfate/thiosulfate t 99.4 6.7E-16 1.5E-20 133.5 -7.6 69 158-235 129-198 (353)
198 cd03301 ABC_MalK_N The N-termi 99.4 1E-15 2.2E-20 124.1 -6.1 68 158-234 123-191 (213)
199 KOG0989|consensus 99.4 2.3E-12 5.1E-17 104.9 13.3 157 11-185 55-227 (346)
200 cd03256 ABC_PhnC_transporter A 99.4 1.6E-15 3.5E-20 125.3 -5.2 69 158-235 137-206 (241)
201 PRK13631 cbiO cobalt transport 99.4 2.4E-15 5.3E-20 128.5 -4.3 69 158-235 169-237 (320)
202 PRK14963 DNA polymerase III su 99.4 1.5E-11 3.2E-16 110.8 19.7 147 13-180 36-209 (504)
203 PRK13635 cbiO cobalt transport 99.4 2.5E-15 5.4E-20 126.4 -4.5 69 158-235 133-202 (279)
204 PRK08903 DnaA regulatory inact 99.4 1.2E-11 2.7E-16 101.1 17.4 178 11-218 40-224 (227)
205 cd03235 ABC_Metallic_Cations A 99.4 4.2E-15 9.1E-20 120.4 -3.1 69 158-235 125-193 (213)
206 TIGR01288 nodI ATP-binding ABC 99.4 1.5E-15 3.2E-20 129.4 -6.1 70 158-236 128-197 (303)
207 cd03293 ABC_NrtD_SsuB_transpor 99.4 3E-15 6.5E-20 121.9 -4.1 69 158-235 124-193 (220)
208 PRK11308 dppF dipeptide transp 99.4 3.3E-15 7.1E-20 128.1 -4.1 69 158-235 147-216 (327)
209 PRK06620 hypothetical protein; 99.4 1.1E-11 2.4E-16 99.8 16.5 134 14-180 45-181 (214)
210 cd03260 ABC_PstB_phosphate_tra 99.4 3.4E-15 7.4E-20 122.2 -3.8 63 163-235 139-201 (227)
211 PRK13641 cbiO cobalt transport 99.4 1.9E-15 4.2E-20 127.7 -5.7 69 158-235 138-206 (287)
212 cd03264 ABC_drug_resistance_li 99.4 2.9E-15 6.3E-20 121.2 -4.5 68 158-235 123-190 (211)
213 cd00009 AAA The AAA+ (ATPases 99.4 2.9E-12 6.3E-17 97.3 12.4 131 3-144 9-150 (151)
214 cd03263 ABC_subfamily_A The AB 99.4 2.9E-15 6.4E-20 122.0 -4.5 67 158-234 126-192 (220)
215 PRK13646 cbiO cobalt transport 99.4 2E-15 4.3E-20 127.5 -5.8 69 158-235 138-207 (286)
216 PRK05563 DNA polymerase III su 99.4 1.7E-11 3.8E-16 112.1 19.4 162 12-195 37-226 (559)
217 cd03257 ABC_NikE_OppD_transpor 99.4 1.1E-15 2.4E-20 125.2 -7.2 68 158-234 138-206 (228)
218 COG1131 CcmA ABC-type multidru 99.4 2.6E-15 5.7E-20 126.6 -5.2 69 160-237 131-200 (293)
219 KOG0062|consensus 99.4 5.4E-13 1.2E-17 115.5 8.7 67 162-240 195-261 (582)
220 PRK13634 cbiO cobalt transport 99.4 2.3E-15 4.9E-20 127.4 -5.8 69 158-235 138-207 (290)
221 PRK11248 tauB taurine transpor 99.4 4.8E-15 1E-19 123.1 -3.8 69 158-235 121-190 (255)
222 PRK13538 cytochrome c biogenes 99.4 7E-15 1.5E-19 118.2 -2.9 74 158-240 122-195 (204)
223 KOG1969|consensus 99.4 9.5E-12 2.1E-16 111.9 16.6 174 8-198 321-516 (877)
224 PRK07994 DNA polymerase III su 99.4 1.1E-11 2.4E-16 113.6 17.5 158 13-192 38-223 (647)
225 cd03294 ABC_Pro_Gly_Bertaine T 99.4 2.5E-15 5.5E-20 125.8 -5.7 69 158-235 153-222 (269)
226 PRK13649 cbiO cobalt transport 99.4 2.3E-15 5E-20 127.0 -6.0 69 158-235 138-206 (280)
227 PRK13652 cbiO cobalt transport 99.4 4.3E-15 9.3E-20 125.0 -4.4 70 158-236 130-200 (277)
228 PRK11629 lolD lipoprotein tran 99.4 3.6E-15 7.7E-20 122.5 -4.9 68 158-234 138-206 (233)
229 PRK13536 nodulation factor exp 99.4 1.8E-15 3.9E-20 130.1 -7.0 72 158-238 165-236 (340)
230 TIGR02211 LolD_lipo_ex lipopro 99.4 2.8E-15 6E-20 122.2 -5.6 69 158-235 134-203 (221)
231 PRK09087 hypothetical protein; 99.4 1.6E-11 3.4E-16 99.7 16.3 174 13-220 44-222 (226)
232 cd03269 ABC_putative_ATPase Th 99.4 1.8E-15 3.9E-20 122.3 -6.7 69 158-235 121-189 (210)
233 cd03219 ABC_Mj1267_LivG_branch 99.4 1.7E-15 3.7E-20 124.7 -6.9 69 158-235 136-204 (236)
234 TIGR02903 spore_lon_C ATP-depe 99.4 2.5E-11 5.4E-16 112.3 19.6 204 4-221 166-431 (615)
235 PRK11124 artP arginine transpo 99.4 5.6E-15 1.2E-19 122.1 -4.0 69 158-235 134-202 (242)
236 PRK13644 cbiO cobalt transport 99.4 4.6E-15 1E-19 124.5 -4.6 69 158-235 129-197 (274)
237 cd03218 ABC_YhbG The ABC trans 99.4 2.6E-15 5.7E-20 123.3 -6.0 68 158-234 126-193 (232)
238 PRK10584 putative ABC transpor 99.4 6.4E-15 1.4E-19 120.6 -3.9 68 158-234 139-207 (228)
239 TIGR02142 modC_ABC molybdenum 99.4 3.4E-15 7.4E-20 129.6 -6.0 69 158-235 124-193 (354)
240 PRK05342 clpX ATP-dependent pr 99.4 2E-11 4.3E-16 107.2 17.5 75 13-87 108-188 (412)
241 cd03298 ABC_ThiQ_thiamine_tran 99.4 3.9E-15 8.4E-20 120.5 -5.3 69 158-235 121-190 (211)
242 cd03296 ABC_CysA_sulfate_impor 99.4 1.9E-15 4.2E-20 124.5 -7.2 69 158-235 129-198 (239)
243 COG4181 Predicted ABC-type tra 99.4 2E-14 4.4E-19 107.1 -1.1 177 7-234 30-207 (228)
244 PRK08691 DNA polymerase III su 99.4 3.5E-11 7.6E-16 110.1 19.4 161 13-195 38-226 (709)
245 PRK14949 DNA polymerase III su 99.4 1.8E-11 3.9E-16 114.3 17.8 159 13-193 38-224 (944)
246 COG4525 TauB ABC-type taurine 99.4 9.9E-14 2.2E-18 105.7 2.4 158 7-233 25-192 (259)
247 PRK10070 glycine betaine trans 99.4 2.1E-15 4.5E-20 131.8 -7.8 69 158-235 157-226 (400)
248 PRK10619 histidine/lysine/argi 99.4 1.1E-14 2.3E-19 121.4 -3.2 67 160-235 147-213 (257)
249 COG1129 MglA ABC-type sugar tr 99.4 8.6E-14 1.9E-18 122.3 2.3 124 163-295 143-308 (500)
250 COG4161 ArtP ABC-type arginine 99.4 4E-14 8.7E-19 104.5 0.2 68 158-234 134-201 (242)
251 TIGR02324 CP_lyasePhnL phospho 99.4 4.1E-15 8.9E-20 121.4 -5.6 67 160-235 144-210 (224)
252 TIGR03410 urea_trans_UrtE urea 99.4 1E-14 2.2E-19 119.7 -3.4 71 156-235 122-193 (230)
253 PRK14951 DNA polymerase III su 99.4 2.6E-11 5.5E-16 111.0 18.3 160 13-194 38-230 (618)
254 PRK13645 cbiO cobalt transport 99.4 1.9E-15 4.1E-20 128.0 -8.0 69 158-235 143-212 (289)
255 cd03295 ABC_OpuCA_Osmoprotecti 99.4 2.5E-15 5.4E-20 124.1 -7.2 69 158-235 128-197 (242)
256 KOG0740|consensus 99.4 4.3E-13 9.3E-18 115.6 6.2 77 227-304 142-218 (428)
257 PRK05642 DNA replication initi 99.4 2.6E-11 5.6E-16 99.2 16.4 159 14-193 46-212 (234)
258 PRK09493 glnQ glutamine ABC tr 99.4 8.7E-15 1.9E-19 120.8 -4.1 69 158-235 129-197 (240)
259 cd03231 ABC_CcmA_heme_exporter 99.4 7.7E-14 1.7E-18 111.8 1.4 75 159-242 119-193 (201)
260 PRK13648 cbiO cobalt transport 99.4 8.5E-15 1.9E-19 122.8 -4.4 69 158-235 135-204 (269)
261 PRK13632 cbiO cobalt transport 99.4 5.7E-15 1.2E-19 123.9 -5.6 69 158-235 135-204 (271)
262 PRK05896 DNA polymerase III su 99.4 2.8E-11 6.1E-16 109.5 17.6 159 13-193 38-224 (605)
263 PRK13636 cbiO cobalt transport 99.4 7.1E-15 1.5E-19 124.0 -5.2 69 158-235 134-203 (283)
264 PRK13633 cobalt transporter AT 99.4 9.9E-15 2.1E-19 123.0 -4.4 70 157-235 136-206 (280)
265 COG0444 DppD ABC-type dipeptid 99.4 1.1E-13 2.4E-18 114.2 1.8 73 158-239 146-219 (316)
266 PRK09536 btuD corrinoid ABC tr 99.4 1E-14 2.2E-19 127.6 -4.5 69 158-235 132-200 (402)
267 PRK13639 cbiO cobalt transport 99.4 4E-15 8.6E-20 125.0 -6.9 69 158-235 130-198 (275)
268 PRK11022 dppD dipeptide transp 99.4 9.8E-15 2.1E-19 125.2 -4.6 69 158-235 146-215 (326)
269 TIGR02769 nickel_nikE nickel i 99.4 4.5E-15 9.7E-20 124.2 -6.6 69 158-235 143-212 (265)
270 PRK11614 livF leucine/isoleuci 99.4 1.3E-14 2.8E-19 119.6 -3.8 69 158-235 130-198 (237)
271 COG0465 HflB ATP-dependent Zn 99.4 4.7E-13 1E-17 120.1 5.7 72 232-304 144-215 (596)
272 cd03268 ABC_BcrA_bacitracin_re 99.4 1.2E-14 2.6E-19 117.3 -4.1 69 158-235 119-187 (208)
273 TIGR00382 clpX endopeptidase C 99.4 2.6E-11 5.7E-16 105.8 16.2 75 13-87 116-196 (413)
274 PRK11831 putative ABC transpor 99.4 4E-15 8.6E-20 124.7 -7.4 69 158-235 136-205 (269)
275 PRK14959 DNA polymerase III su 99.4 6.2E-11 1.3E-15 107.9 19.1 151 13-181 38-213 (624)
276 TIGR01277 thiQ thiamine ABC tr 99.4 6.9E-15 1.5E-19 119.1 -5.8 69 158-235 121-190 (213)
277 PRK13640 cbiO cobalt transport 99.4 1.2E-14 2.5E-19 122.6 -4.8 68 158-234 136-204 (282)
278 PRK10247 putative ABC transpor 99.4 2.6E-14 5.6E-19 116.7 -2.8 69 158-235 130-199 (225)
279 PRK10895 lipopolysaccharide AB 99.4 1E-14 2.2E-19 120.5 -5.2 68 158-234 130-197 (241)
280 PRK11144 modC molybdate transp 99.4 1E-14 2.2E-19 126.5 -5.5 69 158-235 121-190 (352)
281 PRK07940 DNA polymerase III su 99.4 3.3E-11 7.1E-16 105.3 16.3 152 11-187 34-212 (394)
282 PRK10771 thiQ thiamine transpo 99.4 7.8E-15 1.7E-19 120.4 -6.0 69 158-235 122-191 (232)
283 PRK13642 cbiO cobalt transport 99.4 1.1E-14 2.4E-19 122.5 -5.2 68 158-234 133-201 (277)
284 TIGR00972 3a0107s01c2 phosphat 99.4 1.5E-14 3.1E-19 119.9 -4.5 68 158-235 137-204 (247)
285 TIGR03864 PQQ_ABC_ATP ABC tran 99.4 1.1E-14 2.5E-19 119.7 -5.1 69 158-235 125-194 (236)
286 PRK11264 putative amino-acid A 99.4 1.3E-14 2.9E-19 120.5 -4.9 68 159-235 138-205 (250)
287 PRK14970 DNA polymerase III su 99.4 1.5E-10 3.3E-15 101.6 20.4 164 12-192 38-212 (367)
288 TIGR03522 GldA_ABC_ATP gliding 99.4 9.4E-15 2E-19 124.3 -5.9 68 158-235 126-193 (301)
289 PRK00440 rfc replication facto 99.4 1E-10 2.2E-15 100.8 19.0 150 14-180 39-195 (319)
290 cd03237 ABC_RNaseL_inhibitor_d 99.4 1.1E-13 2.4E-18 114.1 0.5 69 158-235 108-177 (246)
291 KOG2004|consensus 99.4 5.9E-12 1.3E-16 113.0 11.3 147 10-161 435-598 (906)
292 TIGR02397 dnaX_nterm DNA polym 99.4 4.9E-11 1.1E-15 104.4 17.1 159 13-193 36-222 (355)
293 PRK13540 cytochrome c biogenes 99.4 3.8E-14 8.2E-19 113.6 -2.3 72 159-239 121-192 (200)
294 PRK14957 DNA polymerase III su 99.4 9E-11 2E-15 106.1 19.0 159 13-193 38-224 (546)
295 PRK13539 cytochrome c biogenes 99.4 3.2E-14 6.9E-19 114.6 -2.8 70 158-236 120-189 (207)
296 KOG0058|consensus 99.4 2.4E-13 5.1E-18 122.6 2.5 160 7-234 488-663 (716)
297 PRK15112 antimicrobial peptide 99.4 6.5E-15 1.4E-19 123.3 -7.1 68 159-235 143-211 (267)
298 cd03267 ABC_NatA_like Similar 99.4 8.1E-15 1.8E-19 120.5 -6.5 70 158-236 146-216 (236)
299 PRK14250 phosphate ABC transpo 99.4 1.6E-14 3.4E-19 119.2 -4.8 69 158-235 124-193 (241)
300 TIGR01189 ccmA heme ABC export 99.4 4E-13 8.6E-18 107.5 3.4 69 158-235 120-188 (198)
301 cd03216 ABC_Carb_Monos_I This 99.4 2.6E-13 5.6E-18 104.9 2.1 61 166-235 83-143 (163)
302 cd03299 ABC_ModC_like Archeal 99.4 8.6E-15 1.9E-19 120.3 -6.6 69 158-235 122-191 (235)
303 cd03222 ABC_RNaseL_inhibitor T 99.4 2.5E-13 5.4E-18 105.7 1.9 60 166-234 72-132 (177)
304 TIGR01184 ntrCD nitrate transp 99.4 2.2E-14 4.7E-19 117.5 -4.2 69 158-235 107-176 (230)
305 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 8.7E-14 1.9E-18 113.4 -0.7 69 158-235 135-203 (224)
306 PRK14969 DNA polymerase III su 99.3 7.7E-11 1.7E-15 107.1 18.2 160 13-194 38-225 (527)
307 TIGR03005 ectoine_ehuA ectoine 99.3 1.1E-14 2.4E-19 121.1 -6.3 69 158-235 139-208 (252)
308 KOG0055|consensus 99.3 1.8E-13 3.9E-18 130.3 1.0 170 7-234 373-548 (1228)
309 COG4148 ModC ABC-type molybdat 99.3 7.9E-13 1.7E-17 106.3 4.4 168 8-234 19-189 (352)
310 cd03246 ABCC_Protease_Secretio 99.3 1.6E-13 3.5E-18 107.3 0.4 60 166-234 97-156 (173)
311 PRK13548 hmuV hemin importer A 99.3 2.3E-14 5.1E-19 119.3 -4.6 69 158-235 127-202 (258)
312 TIGR01650 PD_CobS cobaltochela 99.3 1.4E-11 3E-16 103.6 12.0 136 11-158 62-232 (327)
313 PRK10575 iron-hydroxamate tran 99.3 2.4E-14 5.1E-19 119.8 -4.7 69 158-235 140-209 (265)
314 PRK11231 fecE iron-dicitrate t 99.3 3.4E-14 7.5E-19 118.2 -3.7 69 158-235 131-199 (255)
315 CHL00176 ftsH cell division pr 99.3 1.7E-12 3.7E-17 119.6 7.1 71 233-304 178-248 (638)
316 PRK11701 phnK phosphonate C-P 99.3 6.8E-14 1.5E-18 116.7 -1.9 69 158-235 144-213 (258)
317 PRK13541 cytochrome c biogenes 99.3 4.9E-13 1.1E-17 106.7 3.0 71 158-237 116-186 (195)
318 TIGR02868 CydC thiol reductant 99.3 1.4E-13 3E-18 126.6 -0.3 62 162-233 467-528 (529)
319 TIGR03415 ABC_choXWV_ATP choli 99.3 9.4E-15 2E-19 126.8 -7.5 69 158-235 157-226 (382)
320 PRK14087 dnaA chromosomal repl 99.3 4.8E-11 1E-15 106.5 15.9 192 14-220 142-348 (450)
321 PRK15093 antimicrobial peptide 99.3 4.8E-14 1E-18 121.3 -3.2 69 158-235 151-220 (330)
322 cd03230 ABC_DR_subfamily_A Thi 99.3 4.2E-13 9.1E-18 104.9 2.3 61 166-235 96-156 (173)
323 cd03247 ABCC_cytochrome_bd The 99.3 4.2E-13 9.2E-18 105.5 2.1 62 163-234 96-157 (178)
324 TIGR02640 gas_vesic_GvpN gas v 99.3 5.4E-11 1.2E-15 99.1 14.8 135 11-158 19-197 (262)
325 COG2274 SunT ABC-type bacterio 99.3 4E-13 8.7E-18 124.8 2.2 161 7-235 493-669 (709)
326 PRK10261 glutathione transport 99.3 8.6E-15 1.9E-19 136.3 -8.9 69 158-235 456-525 (623)
327 PRK14273 phosphate ABC transpo 99.3 3.9E-14 8.4E-19 117.9 -4.2 68 158-235 143-210 (254)
328 PRK14953 DNA polymerase III su 99.3 1.3E-10 2.9E-15 104.4 18.1 160 13-194 38-225 (486)
329 COG4987 CydC ABC-type transpor 99.3 5.4E-13 1.2E-17 116.3 2.7 69 158-236 467-535 (573)
330 cd03297 ABC_ModC_molybdenum_tr 99.3 1.2E-14 2.6E-19 117.8 -7.2 69 158-235 124-193 (214)
331 TIGR01978 sufC FeS assembly AT 99.3 3.9E-14 8.5E-19 117.2 -4.4 68 159-235 137-205 (243)
332 cd03215 ABC_Carb_Monos_II This 99.3 5.3E-13 1.2E-17 105.2 2.3 61 166-235 105-165 (182)
333 PRK11247 ssuB aliphatic sulfon 99.3 6.6E-14 1.4E-18 116.2 -3.0 69 158-235 126-195 (257)
334 cd03300 ABC_PotA_N PotA is an 99.3 2.4E-14 5.2E-19 117.5 -5.7 69 158-235 123-192 (232)
335 COG4618 ArpD ABC-type protease 99.3 1.9E-13 4E-18 118.3 -0.4 166 7-235 356-533 (580)
336 COG4988 CydD ABC-type transpor 99.3 3.8E-13 8.2E-18 118.8 1.4 166 7-235 341-516 (559)
337 PRK09473 oppD oligopeptide tra 99.3 4.4E-14 9.6E-19 121.2 -4.4 68 159-235 155-223 (330)
338 PRK14952 DNA polymerase III su 99.3 1.3E-10 2.8E-15 106.0 17.8 158 13-192 35-222 (584)
339 TIGR02770 nickel_nikD nickel i 99.3 1.9E-14 4E-19 118.0 -6.5 68 158-234 118-186 (230)
340 PRK09984 phosphonate/organopho 99.3 4.1E-14 9E-19 118.2 -4.5 69 158-235 145-214 (262)
341 PRK14259 phosphate ABC transpo 99.3 5.4E-14 1.2E-18 117.8 -3.9 68 158-235 147-214 (269)
342 PRK15056 manganese/iron transp 99.3 2.2E-12 4.8E-17 108.3 5.8 69 158-235 135-203 (272)
343 smart00382 AAA ATPases associa 99.3 2.1E-11 4.5E-16 91.9 10.6 75 13-87 2-93 (148)
344 PRK10744 pstB phosphate transp 99.3 5.1E-14 1.1E-18 117.5 -4.2 68 158-235 149-216 (260)
345 PRK14268 phosphate ABC transpo 99.3 3.6E-14 7.9E-19 118.3 -5.1 68 158-235 147-214 (258)
346 TIGR03015 pepcterm_ATPase puta 99.3 7E-10 1.5E-14 93.2 20.8 197 10-221 39-267 (269)
347 TIGR02323 CP_lyasePhnK phospho 99.3 1.1E-13 2.4E-18 115.2 -2.3 69 158-235 141-210 (253)
348 PRK13545 tagH teichoic acids e 99.3 7.7E-14 1.7E-18 123.9 -3.4 69 158-235 136-204 (549)
349 TIGR03873 F420-0_ABC_ATP propo 99.3 5.8E-14 1.3E-18 116.9 -4.0 70 158-236 130-199 (256)
350 PRK11034 clpA ATP-dependent Cl 99.3 1.1E-10 2.3E-15 109.8 17.0 170 14-194 489-712 (758)
351 COG3845 ABC-type uncharacteriz 99.3 3.1E-13 6.6E-18 116.8 0.1 231 7-297 24-309 (501)
352 PRK14965 DNA polymerase III su 99.3 1.2E-10 2.6E-15 107.1 16.9 160 12-193 37-224 (576)
353 PRK09111 DNA polymerase III su 99.3 2.4E-10 5.3E-15 104.8 18.8 165 13-193 46-237 (598)
354 PRK13543 cytochrome c biogenes 99.3 6E-13 1.3E-17 107.8 1.7 72 159-239 131-202 (214)
355 TIGR02982 heterocyst_DevA ABC 99.3 2.8E-14 6.1E-19 116.1 -6.1 68 158-234 134-202 (220)
356 KOG1051|consensus 99.3 4.5E-10 9.7E-15 105.3 20.7 148 4-160 199-364 (898)
357 PRK06647 DNA polymerase III su 99.3 1.7E-10 3.7E-15 105.3 17.6 160 13-194 38-225 (563)
358 cd03233 ABC_PDR_domain1 The pl 99.3 3E-12 6.6E-17 102.6 5.5 63 159-230 112-175 (202)
359 PRK14242 phosphate transporter 99.3 5E-14 1.1E-18 117.2 -5.0 67 159-235 143-209 (253)
360 PRK14235 phosphate transporter 99.3 7.3E-14 1.6E-18 116.9 -4.0 68 159-236 157-224 (267)
361 PRK14950 DNA polymerase III su 99.3 3.3E-10 7.1E-15 104.7 19.5 159 13-193 38-225 (585)
362 PRK11176 lipid transporter ATP 99.3 6.1E-13 1.3E-17 123.8 1.7 63 163-235 478-540 (582)
363 PRK10253 iron-enterobactin tra 99.3 4.9E-14 1.1E-18 117.9 -5.2 69 158-235 136-205 (265)
364 PRK09544 znuC high-affinity zi 99.3 4.6E-13 9.9E-18 110.9 0.5 69 158-235 113-182 (251)
365 PRK14269 phosphate ABC transpo 99.3 8.4E-14 1.8E-18 115.3 -3.9 67 159-235 136-202 (246)
366 cd03217 ABC_FeS_Assembly ABC-t 99.3 2.4E-12 5.1E-17 103.1 4.6 65 161-234 100-164 (200)
367 PRK14247 phosphate ABC transpo 99.3 6.8E-14 1.5E-18 116.2 -4.6 67 159-235 140-206 (250)
368 PF05673 DUF815: Protein of un 99.3 4.1E-10 9E-15 90.2 17.1 162 11-189 50-241 (249)
369 PRK14249 phosphate ABC transpo 99.3 7.3E-14 1.6E-18 116.1 -4.5 68 158-235 140-207 (251)
370 cd03252 ABCC_Hemolysin The ABC 99.3 2.4E-13 5.2E-18 112.0 -1.5 67 159-235 132-198 (237)
371 PRK00635 excinuclease ABC subu 99.3 1.9E-12 4.1E-17 129.2 4.5 67 159-234 803-872 (1809)
372 PRK10419 nikE nickel transport 99.3 1.8E-14 4E-19 120.6 -8.3 69 158-235 144-213 (268)
373 PRK13547 hmuV hemin importer A 99.3 1.1E-13 2.4E-18 115.8 -3.6 69 158-235 138-216 (272)
374 cd03229 ABC_Class3 This class 99.3 1.2E-12 2.5E-17 102.9 2.4 61 166-235 101-162 (178)
375 PRK11300 livG leucine/isoleuci 99.3 6.4E-14 1.4E-18 116.7 -5.1 70 158-236 146-216 (255)
376 PRK14241 phosphate transporter 99.3 7.8E-14 1.7E-18 116.3 -4.6 68 158-235 141-208 (258)
377 PRK06305 DNA polymerase III su 99.3 4.6E-10 1E-14 100.2 19.1 158 13-192 39-225 (451)
378 PRK11174 cysteine/glutathione 99.3 3E-13 6.5E-18 125.9 -1.3 62 163-234 483-544 (588)
379 PRK14274 phosphate ABC transpo 99.3 8.8E-14 1.9E-18 116.1 -4.4 67 159-235 149-215 (259)
380 cd03213 ABCG_EPDR ABCG transpo 99.3 4E-12 8.8E-17 101.2 5.3 61 165-234 111-171 (194)
381 PRK14254 phosphate ABC transpo 99.3 6.9E-14 1.5E-18 118.0 -5.1 68 158-235 173-240 (285)
382 TIGR03740 galliderm_ABC gallid 99.3 1.1E-12 2.4E-17 107.0 2.1 69 158-235 117-185 (223)
383 PRK14237 phosphate transporter 99.3 8E-14 1.7E-18 116.7 -4.7 68 158-235 156-223 (267)
384 PRK08451 DNA polymerase III su 99.3 4E-10 8.6E-15 101.4 18.5 163 12-196 35-225 (535)
385 cd03238 ABC_UvrA The excision 99.3 1.2E-12 2.5E-17 101.9 2.0 67 159-234 81-149 (176)
386 PRK13546 teichoic acids export 99.3 1.9E-13 4E-18 113.9 -2.7 69 158-235 136-204 (264)
387 PRK14243 phosphate transporter 99.3 1.9E-13 4.1E-18 114.3 -2.7 68 158-235 144-211 (264)
388 TIGR03771 anch_rpt_ABC anchore 99.3 3E-13 6.6E-18 110.2 -1.5 69 158-235 106-174 (223)
389 COG4604 CeuD ABC-type enteroch 99.3 4.1E-13 9E-18 102.5 -0.7 167 7-234 21-196 (252)
390 PRK14256 phosphate ABC transpo 99.3 1E-13 2.2E-18 115.3 -4.4 67 159-235 142-208 (252)
391 TIGR00968 3a0106s01 sulfate AB 99.3 6E-14 1.3E-18 115.5 -5.7 69 158-235 123-192 (237)
392 cd03369 ABCC_NFT1 Domain 2 of 99.3 6.2E-12 1.3E-16 101.4 6.0 66 159-234 119-184 (207)
393 TIGR03411 urea_trans_UrtD urea 99.3 5.3E-14 1.1E-18 116.3 -6.2 68 158-235 136-203 (242)
394 cd03248 ABCC_TAP TAP, the Tran 99.3 2.8E-13 6.1E-18 110.8 -1.9 68 158-235 143-210 (226)
395 PRK14240 phosphate transporter 99.3 1.5E-13 3.3E-18 114.1 -3.6 68 158-235 139-206 (250)
396 KOG0743|consensus 99.3 6.6E-12 1.4E-16 107.7 6.2 79 226-305 190-268 (457)
397 PRK14955 DNA polymerase III su 99.3 2.4E-10 5.1E-15 101.0 16.3 165 13-193 38-232 (397)
398 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.3 3.5E-13 7.6E-18 111.1 -1.6 64 161-234 135-198 (238)
399 PRK14954 DNA polymerase III su 99.3 8.6E-10 1.9E-14 101.4 20.3 164 13-192 38-231 (620)
400 PRK07133 DNA polymerase III su 99.3 3.2E-10 7E-15 104.8 17.5 165 13-193 40-223 (725)
401 cd03223 ABCD_peroxisomal_ALDP 99.3 3.2E-12 7E-17 99.1 3.9 60 163-234 89-148 (166)
402 PRK14267 phosphate ABC transpo 99.3 8E-14 1.7E-18 116.0 -5.5 67 159-235 143-209 (253)
403 PRK14260 phosphate ABC transpo 99.3 1.1E-13 2.4E-18 115.4 -4.6 68 158-235 143-210 (259)
404 PRK14948 DNA polymerase III su 99.3 3.3E-10 7.2E-15 104.6 17.6 158 13-192 38-225 (620)
405 PRK14270 phosphate ABC transpo 99.3 1.4E-13 3E-18 114.4 -4.2 68 158-235 140-207 (251)
406 cd03234 ABCG_White The White s 99.3 4.6E-13 1E-17 109.4 -1.1 68 158-234 136-203 (226)
407 PRK14265 phosphate ABC transpo 99.3 1.6E-13 3.5E-18 115.2 -3.8 68 158-235 154-221 (274)
408 COG1474 CDC6 Cdc6-related prot 99.3 6.6E-10 1.4E-14 96.3 18.2 194 11-218 40-263 (366)
409 cd03232 ABC_PDR_domain2 The pl 99.3 4.1E-12 8.8E-17 101.1 4.2 61 165-234 108-168 (192)
410 COG0593 DnaA ATPase involved i 99.3 4.6E-10 1E-14 97.1 17.0 194 12-222 112-315 (408)
411 cd03244 ABCC_MRP_domain2 Domai 99.3 9E-13 2E-17 107.4 0.3 64 161-234 135-198 (221)
412 PRK14238 phosphate transporter 99.3 1.9E-13 4E-18 114.7 -3.9 68 158-235 160-227 (271)
413 cd03250 ABCC_MRP_domain1 Domai 99.3 3.5E-12 7.5E-17 102.6 3.6 65 161-234 123-188 (204)
414 cd03228 ABCC_MRP_Like The MRP 99.3 7.4E-13 1.6E-17 103.3 -0.3 59 166-234 97-155 (171)
415 cd03253 ABCC_ATM1_transporter 99.3 4.8E-13 1E-17 110.2 -1.6 65 160-234 132-196 (236)
416 COG4559 ABC-type hemin transpo 99.3 2.4E-12 5.2E-17 99.5 2.3 69 158-235 128-202 (259)
417 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.3 4.1E-12 8.9E-17 96.0 3.6 57 166-234 71-127 (144)
418 PRK14251 phosphate ABC transpo 99.2 1.2E-13 2.6E-18 114.8 -5.3 67 159-235 141-207 (251)
419 cd03245 ABCC_bacteriocin_expor 99.2 5.4E-13 1.2E-17 108.7 -1.5 61 164-234 139-199 (220)
420 PRK14253 phosphate ABC transpo 99.2 2.5E-13 5.3E-18 112.8 -3.5 68 158-235 138-205 (249)
421 PRK11160 cysteine/glutathione 99.2 7.4E-13 1.6E-17 122.6 -0.7 64 162-235 472-535 (574)
422 PRK14263 phosphate ABC transpo 99.2 2.2E-13 4.7E-18 113.6 -3.9 66 160-235 144-209 (261)
423 PRK14266 phosphate ABC transpo 99.2 2.7E-13 5.9E-18 112.6 -3.3 68 158-235 139-206 (250)
424 KOG0732|consensus 99.2 7.1E-12 1.5E-16 117.9 5.5 66 232-297 259-324 (1080)
425 PRK14262 phosphate ABC transpo 99.2 2.7E-13 5.9E-18 112.6 -3.5 68 158-235 139-206 (250)
426 TIGR02857 CydD thiol reductant 99.2 8.2E-13 1.8E-17 121.5 -0.7 64 161-234 454-517 (529)
427 cd03251 ABCC_MsbA MsbA is an e 99.2 7.4E-13 1.6E-17 108.9 -1.1 65 160-234 133-197 (234)
428 PRK09700 D-allose transporter 99.2 9E-14 1.9E-18 127.1 -7.2 69 159-236 403-471 (510)
429 TIGR01187 potA spermidine/putr 99.2 4.7E-14 1E-18 121.1 -8.6 69 158-235 93-162 (325)
430 PRK14239 phosphate transporter 99.2 1.9E-13 4.2E-18 113.6 -4.7 68 158-235 141-208 (252)
431 PF05496 RuvB_N: Holliday junc 99.2 1.1E-11 2.4E-16 97.8 5.4 63 233-303 19-81 (233)
432 cd03254 ABCC_Glucan_exporter_l 99.2 6.1E-13 1.3E-17 109.0 -1.8 65 160-234 134-198 (229)
433 KOG0741|consensus 99.2 5.8E-10 1.3E-14 97.3 16.3 162 9-177 534-699 (744)
434 COG4778 PhnL ABC-type phosphon 99.2 1.3E-12 2.8E-17 97.4 0.1 171 7-228 31-206 (235)
435 COG1119 ModF ABC-type molybden 99.2 1.3E-11 2.9E-16 97.8 5.8 67 158-233 164-232 (257)
436 PRK03695 vitamin B12-transport 99.2 2.9E-13 6.3E-18 112.1 -3.8 69 158-235 119-194 (248)
437 PRK15134 microcin C ABC transp 99.2 7E-14 1.5E-18 128.3 -8.3 70 158-236 418-488 (529)
438 COG1137 YhbG ABC-type (unclass 99.2 4.8E-14 1E-18 107.8 -7.8 67 158-233 132-198 (243)
439 PRK14236 phosphate transporter 99.2 1.6E-13 3.4E-18 115.2 -5.6 68 158-235 161-228 (272)
440 PRK14246 phosphate ABC transpo 99.2 2.6E-13 5.7E-18 112.9 -4.3 67 159-235 147-213 (257)
441 PRK14275 phosphate ABC transpo 99.2 2.7E-13 5.8E-18 114.6 -4.3 68 158-235 175-242 (286)
442 TIGR02639 ClpA ATP-dependent C 99.2 5.6E-10 1.2E-14 105.9 17.4 169 14-195 485-709 (731)
443 TIGR01842 type_I_sec_PrtD type 99.2 9.6E-13 2.1E-17 121.3 -1.3 64 162-234 451-514 (544)
444 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 8E-13 1.7E-17 125.6 -1.9 62 162-235 612-673 (710)
445 PRK10418 nikD nickel transport 99.2 8.9E-14 1.9E-18 115.7 -7.4 69 158-235 133-202 (254)
446 TIGR02203 MsbA_lipidA lipid A 99.2 1.8E-12 3.9E-17 120.4 0.5 62 163-234 467-528 (571)
447 PRK13549 xylose transporter AT 99.2 1.1E-13 2.3E-18 126.4 -7.6 68 160-236 400-467 (506)
448 PRK14271 phosphate ABC transpo 99.2 2.5E-13 5.5E-18 114.1 -4.8 67 159-235 157-223 (276)
449 PRK10790 putative multidrug tr 99.2 1.3E-12 2.8E-17 121.7 -0.6 63 162-234 473-535 (592)
450 PRK09580 sufC cysteine desulfu 99.2 1.9E-12 4.1E-17 107.4 0.4 61 165-234 145-205 (248)
451 PRK11288 araG L-arabinose tran 99.2 1.2E-13 2.7E-18 125.9 -7.4 69 160-237 391-459 (501)
452 COG1132 MdlB ABC-type multidru 99.2 1.1E-12 2.4E-17 121.5 -1.3 62 163-234 463-524 (567)
453 COG4172 ABC-type uncharacteriz 99.2 2E-11 4.3E-16 103.2 6.2 168 7-234 307-487 (534)
454 PRK14248 phosphate ABC transpo 99.2 2E-13 4.3E-18 114.5 -5.8 68 158-235 157-224 (268)
455 KOG0066|consensus 99.2 9.9E-13 2.2E-17 112.0 -1.7 69 160-240 407-475 (807)
456 PRK14245 phosphate ABC transpo 99.2 6.4E-13 1.4E-17 110.3 -2.9 67 159-235 140-206 (250)
457 TIGR00678 holB DNA polymerase 99.2 7.5E-10 1.6E-14 87.8 14.8 143 12-180 13-183 (188)
458 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1E-12 2.3E-17 124.3 -1.9 60 163-234 586-645 (686)
459 COG4598 HisP ABC-type histidin 99.2 2E-12 4.3E-17 97.4 -0.0 73 159-240 146-218 (256)
460 KOG0057|consensus 99.2 1.9E-12 4.2E-17 113.1 -0.2 65 161-235 483-547 (591)
461 PRK14261 phosphate ABC transpo 99.2 4.2E-13 9.1E-18 111.6 -4.4 67 159-235 143-209 (253)
462 TIGR01193 bacteriocin_ABC ABC- 99.2 1.2E-12 2.6E-17 124.3 -1.8 63 162-235 608-670 (708)
463 PRK13409 putative ATPase RIL; 99.2 3.2E-12 6.9E-17 117.8 0.9 77 149-235 438-515 (590)
464 COG2812 DnaX DNA polymerase II 99.2 1.9E-10 4E-15 102.4 11.9 168 13-196 38-227 (515)
465 PRK13657 cyclic beta-1,2-gluca 99.2 1.7E-12 3.7E-17 120.8 -1.0 62 163-234 469-530 (588)
466 TIGR00390 hslU ATP-dependent p 99.2 8.3E-10 1.8E-14 95.4 15.4 56 13-68 47-104 (441)
467 TIGR03375 type_I_sec_LssB type 99.2 1.3E-12 2.8E-17 123.9 -2.0 63 162-234 598-660 (694)
468 COG4136 ABC-type uncharacteriz 99.2 8.4E-12 1.8E-16 91.2 2.7 173 7-236 22-197 (213)
469 CHL00131 ycf16 sulfate ABC tra 99.2 2.2E-12 4.8E-17 107.3 -0.6 69 158-235 143-212 (252)
470 PRK14244 phosphate ABC transpo 99.2 4.4E-13 9.6E-18 111.3 -4.8 67 159-235 143-209 (251)
471 cd03290 ABCC_SUR1_N The SUR do 99.2 3.5E-11 7.5E-16 97.8 6.4 66 161-235 136-203 (218)
472 PRK14272 phosphate ABC transpo 99.2 3.3E-13 7.2E-18 112.2 -5.6 67 159-235 142-208 (252)
473 PRK14257 phosphate ABC transpo 99.2 6.6E-13 1.4E-17 113.9 -4.1 69 158-236 218-286 (329)
474 PLN00020 ribulose bisphosphate 99.2 1.9E-11 4.1E-16 103.3 4.6 67 236-304 113-180 (413)
475 COG0411 LivG ABC-type branched 99.2 1.3E-12 2.8E-17 103.4 -2.2 73 158-239 142-215 (250)
476 COG4133 CcmA ABC-type transpor 99.2 6.7E-12 1.5E-16 95.3 1.7 167 7-233 22-189 (209)
477 TIGR02204 MsbA_rel ABC transpo 99.2 2.7E-12 5.8E-17 119.4 -0.6 62 163-234 474-535 (576)
478 PRK14255 phosphate ABC transpo 99.2 3.5E-13 7.6E-18 112.1 -6.1 68 158-235 141-208 (252)
479 PTZ00265 multidrug resistance 99.2 3.1E-12 6.7E-17 128.6 -0.7 63 163-234 1356-1419(1466)
480 PRK14258 phosphate ABC transpo 99.2 6.3E-13 1.4E-17 111.0 -4.7 68 159-235 144-212 (261)
481 TIGR00958 3a01208 Conjugate Tr 99.2 1.3E-11 2.9E-16 116.9 3.6 60 163-234 615-674 (711)
482 PRK10982 galactose/methyl gala 99.2 5.4E-13 1.2E-17 121.4 -5.7 69 159-236 385-453 (491)
483 cd00267 ABC_ATPase ABC (ATP-bi 99.2 2.2E-11 4.8E-16 93.7 4.1 60 166-234 81-140 (157)
484 TIGR01192 chvA glucan exporter 99.2 2.6E-12 5.7E-17 119.2 -1.3 64 161-234 467-530 (585)
485 PRK10789 putative multidrug tr 99.2 2.7E-12 5.9E-17 118.8 -1.3 63 162-234 448-510 (569)
486 TIGR03269 met_CoM_red_A2 methy 99.2 4.8E-13 1E-17 122.6 -6.3 68 159-235 421-489 (520)
487 PRK14264 phosphate ABC transpo 99.2 9.6E-13 2.1E-17 112.1 -4.2 68 158-235 193-260 (305)
488 COG4152 ABC-type uncharacteriz 99.2 3.6E-13 7.9E-18 106.2 -6.2 175 7-240 22-196 (300)
489 TIGR02633 xylG D-xylose ABC tr 99.2 3.6E-13 7.8E-18 122.9 -7.3 69 160-237 398-466 (500)
490 PRK10762 D-ribose transporter 99.2 3.6E-13 7.8E-18 122.8 -7.4 68 160-236 390-457 (501)
491 cd03289 ABCC_CFTR2 The CFTR su 99.2 3E-12 6.5E-17 107.1 -1.3 60 165-234 138-197 (275)
492 TIGR01257 rim_protein retinal- 99.1 8.1E-13 1.8E-17 134.0 -6.1 174 7-236 1959-2132(2272)
493 PRK04132 replication factor C 99.1 2E-09 4.4E-14 101.5 16.7 152 14-186 565-729 (846)
494 COG0396 sufC Cysteine desulfur 99.1 2.3E-12 5.1E-17 100.9 -2.3 69 158-235 136-205 (251)
495 PRK14971 DNA polymerase III su 99.1 4E-09 8.6E-14 97.5 18.3 159 13-193 39-226 (614)
496 COG4107 PhnK ABC-type phosphon 99.1 8.7E-12 1.9E-16 93.4 0.7 184 7-233 26-211 (258)
497 PRK10535 macrolide transporter 99.1 1.4E-12 3E-17 122.1 -4.5 68 158-234 137-204 (648)
498 TIGR01194 cyc_pep_trnsptr cycl 99.1 2.1E-11 4.5E-16 112.6 3.4 62 164-234 469-531 (555)
499 PRK14252 phosphate ABC transpo 99.1 2.7E-12 5.8E-17 107.5 -2.5 67 158-234 154-220 (265)
500 PF07728 AAA_5: AAA domain (dy 99.1 3.5E-10 7.6E-15 85.1 9.3 110 15-137 1-139 (139)
No 1
>KOG0733|consensus
Probab=100.00 E-value=9.3e-71 Score=474.40 Aligned_cols=302 Identities=36% Similarity=0.611 Sum_probs=278.7
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
.+.|.++|+.+++++||+||||||||.||+++|++++.+|+.|++..+.+.+.|+.|++++++|+.|...+|||+||||+
T Consensus 212 Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 212 PEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred chhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCc--hhHHHHHHHHHHHHhhhccc---CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 82 DVLCTGRNRS--DQERRLLSCLVTQVDRLHEL---QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 82 d~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~---~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
|.+.+++... +.+++.+++|+..|+.+... ..+|+||++||+++.++++|||.|||+++|++.+|+..+|..|++
T Consensus 292 DAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 292 DAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHH
Confidence 9999998765 56789999999999988764 478999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc----------------------------------
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETE---------------------------------- 202 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~---------------------------------- 202 (305)
..++.......- +..++|..|+||+|+|+.+|+..|...++++..
T Consensus 372 ~~~~~lrl~g~~-d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~ 450 (802)
T KOG0733|consen 372 IICRGLRLSGDF-DFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNA 450 (802)
T ss_pred HHHhhCCCCCCc-CHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcc
Confidence 888876655533 788999999999999999999999887764311
Q ss_pred -------------------------CCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccccchHHHHHHHHHHhhcc
Q psy5649 203 -------------------------GTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWP 257 (305)
Q Consensus 203 -------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~ 257 (305)
.+.-.+..+||.+|+..++|+..+..+.+.|++.|+|||++++++.++...+.||
T Consensus 451 ~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~P 530 (802)
T KOG0733|consen 451 ERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAP 530 (802)
T ss_pred cccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhh
Confidence 0011245788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 258 LKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 258 ~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+++++.|+++|++.|.|+||+||||||||+||||+|+|.|+|||+||
T Consensus 531 iK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 531 IKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred ccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 99999999999999999999999999999999999999999999997
No 2
>KOG0730|consensus
Probab=100.00 E-value=2.1e-61 Score=421.55 Aligned_cols=291 Identities=45% Similarity=0.784 Sum_probs=276.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCC-CeEEEEccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA-PSLLLLDNL 81 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vl~ide~ 81 (305)
.++.+++++++.++|+|||||||||.+++++|++.+..++.+++..+++++.|+++..++..|+.|.+.+ |++++|||+
T Consensus 208 ~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730|consen 208 ALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred hhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhH
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccccCCCCCchh-HHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 82 DVLCTGRNRSDQ-ERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 82 d~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
|.+++++...+. ..+..+++..+++.+.. ...++|+++||+++.|+++++| |||++++++..|+..+|.+|++.+.+
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k 365 (693)
T KOG0730|consen 288 DALCPKREGADDVESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTK 365 (693)
T ss_pred hhhCCcccccchHHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHH
Confidence 999998877655 78899999999998875 6789999999999999999999 99999999999999999999998888
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 240 (305)
+.+.. +..++..+|..|+||+++|+..++..+.....++ +.+++..++...+|+..+.+.++.+.+.|+||
T Consensus 366 ~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dI 436 (693)
T KOG0730|consen 366 KMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR--------TLEIFQEALMGIRPSALREILVEMPNVSWDDI 436 (693)
T ss_pred hcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------hHHHHHHHHhcCCchhhhheeccCCCCChhhc
Confidence 87766 6678999999999999999999999999888766 56789999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 241 GGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 241 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
||++++|+.+++.+.||.+|++.|.++|+++|+|||||||||||||++||++|+++++||++||
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk 500 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK 500 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1e-49 Score=374.60 Aligned_cols=300 Identities=43% Similarity=0.749 Sum_probs=265.7
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++++++++.++.+++|+||||||||++++++|++++.+++.++++++.+.+.+..+..++.+|+.+....|+||+|||+|
T Consensus 202 ~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid 281 (733)
T TIGR01243 202 ELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEID 281 (733)
T ss_pred HHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+++.++.. ....+....++..++.... ...+++|++||.++.++++++++|||+..++++.|+..+|.+|++.+.+
T Consensus 282 ~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~-~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 282 AIAPKREEVTGEVEKRVVAQLLTLMDGLKG-RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhhcccc-CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 998776542 3345677788888877655 5678899999999999999999999999999999999999999997666
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC----------------CCccccHHHHHHHhhhcCCch
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG----------------TGQVLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~ 224 (305)
..+.. ....++.++..|+||+++|+..++..+....+++... ....++.+++..++....|+.
T Consensus 361 ~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 361 NMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred CCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccc
Confidence 54432 2336889999999999999999999998776643211 112356789999999999988
Q ss_pred hhhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 225 MRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+....+.+...|++++|++.+|+.+.+.+.||+++++.|.++++.+++|+|||||||||||++|+++|++++.+|++|+
T Consensus 440 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 440 IREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred cchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 88888888899999999999999999999999999999999999999999999999999999999999999999999986
No 4
>KOG0735|consensus
Probab=100.00 E-value=3e-48 Score=340.20 Aligned_cols=295 Identities=28% Similarity=0.490 Sum_probs=257.6
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcC----CeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK----VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~----~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
+....+++|+||+|||||+|+++++.+.. +++..++|+.+.+.......+.++.+|..+..++|+|+++|++|+++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 44566899999999999999999999864 56778999999999999999999999999999999999999999999
Q ss_pred CCCCCc----hhHHHHHHHHH-HHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 86 TGRNRS----DQERRLLSCLV-TQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 86 ~~~~~~----~~~~~~~~~l~-~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
...+.. +.....+..++ +.+..+...+..+.+|++.+....+++.|-.+++|+..+.++.|+..+|.+|++..++
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 733222 22223334444 5556666667788999999999999999999999999999999999999999999888
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc-CCCccccHHHHHHHhhhcCCchhhhhhccCCC-CCcc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETE-GTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN-VKWS 238 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 238 (305)
+........+++-++..|+||.+.|+..++.++...++.+-. .....++.++|.++++.+.|..++.+....+. ..|+
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~ 667 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWE 667 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccCCCCce
Confidence 777666778899999999999999999999999987774432 23347888999999999999999888755544 8999
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 239 DIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 239 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
||||+.++|+.+.+++.||.+|+.+|.+++++.+.|||||||||||||.||.++|.+++++||+||
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK 733 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK 733 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 5
>KOG0736|consensus
Probab=100.00 E-value=1.4e-47 Score=338.79 Aligned_cols=287 Identities=32% Similarity=0.565 Sum_probs=243.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCch
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSD 92 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~ 92 (305)
...+||+|+|||||||++++.|.+++.++++++|.++.+.....++.++...|..|+..+|+|||+-+.|.+.-+.+. .
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-g 509 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-G 509 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-c
Confidence 446999999999999999999999999999999999999999999999999999999999999999999999855554 3
Q ss_pred hHHHHHHHHHHHHh--hhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHh
Q psy5649 93 QERRLLSCLVTQVD--RLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQ 170 (305)
Q Consensus 93 ~~~~~~~~l~~~~~--~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~ 170 (305)
...+....+-..+. .....+..++++++++..+.+++.+++ .|..+|.++.|+.++|.+|++.++......- ...
T Consensus 510 ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~-~v~ 586 (953)
T KOG0736|consen 510 EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQ-DVN 586 (953)
T ss_pred hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccch-HHH
Confidence 33444433333332 233347889999999999999999998 7889999999999999999998887665443 337
Q ss_pred HHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc-----------------CCCccccHHHHHHHhhhcCCchhhh-hhccC
Q psy5649 171 IQQVAFITHGFVGGDLATLLSNATSALLVETE-----------------GTGQVLSYDGVMRALDHVKPSAMRQ-VLVEV 232 (305)
Q Consensus 171 ~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 232 (305)
++.++..|.||+.+|+..++......+..+.. .....++.+||-+++.+.+...... .....
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 88899999999999999999887443332211 1125678899999999887764433 34678
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
|++.|+||||++++|..+.+.+..|++|+++|.. |+++++|||||||||||||++|||+|.|+.++|+|||
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVK 737 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVK 737 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeec
Confidence 9999999999999999999999999999999985 8999999999999999999999999999999999997
No 6
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-43 Score=285.64 Aligned_cols=215 Identities=27% Similarity=0.463 Sum_probs=196.2
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++|+.+|+.+|++||||||||||||.|||++|++.++.|+.|.++.+..+|.|+..+.++++|..|+.++|||+||||+|
T Consensus 175 ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 175 ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
++...+.+. ...++.+-+|+.+++.+.. .+++-||++||+++.|||++.|+|||++.|++|.|+...|.+|++.
T Consensus 255 AIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 255 AIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred hhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 998776543 2334666677788888777 7889999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+.++....-+. +++.+|..|+|++++||+++|.+|-.+++++ ..+.++.+||.+|.+++..
T Consensus 334 HtrkM~l~~dv-d~e~la~~~~g~sGAdlkaictEAGm~AiR~---~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 334 HTRKMNLADDV-DLELLARLTEGFSGADLKAICTEAGMFAIRE---RRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhhhccCccCc-CHHHHHHhcCCCchHHHHHHHHHHhHHHHHh---ccCeecHHHHHHHHHHHHh
Confidence 88887766554 7999999999999999999999999999987 5678899999999988754
No 7
>KOG0730|consensus
Probab=100.00 E-value=7.9e-41 Score=292.81 Aligned_cols=218 Identities=30% Similarity=0.501 Sum_probs=201.8
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|..+++.++++||||||||||||+++|++|++.+.+|+.|.+.++.++|.|+.|+.++++|+.|+..+|||+|+||+|
T Consensus 458 e~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiD 537 (693)
T KOG0730|consen 458 EKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEID 537 (693)
T ss_pred HHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+...++.. +...+.+++++..|+.+.. ...|+||++||+++.||+++.|||||+..|++|+|+...|.+|++..++
T Consensus 538 si~~~R~g~~~~v~~RVlsqLLtEmDG~e~-~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 538 ALAGSRGGSSSGVTDRVLSQLLTEMDGLEA-LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred hHhhccCCCccchHHHHHHHHHHHcccccc-cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 999888544 4467899999999999887 6789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
+.+..-+. +++.+|.+|+||+|+||..+|++|...++++... ...+..++|.+++...+++
T Consensus 617 kmp~~~~v-dl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 617 KMPFSEDV-DLEELAQATEGYSGAEIVAVCQEAALLALRESIE-ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred cCCCCccc-cHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc-cccccHHHHHHHHHhhccc
Confidence 88876554 7999999999999999999999999999988654 4567788999999988876
No 8
>KOG0733|consensus
Probab=100.00 E-value=4e-40 Score=285.13 Aligned_cols=220 Identities=28% Similarity=0.488 Sum_probs=195.8
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
+.+|+.+|+..+.+||||||||||||.||+++|++.+.+|+.|.+..++.+|.|+.|+.++.+|++|+.++|||+|+||+
T Consensus 534 pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 534 PDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred HHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecch
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 82 DVLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 82 d~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
|.|++.++.. ....+.+++|+..++...+ ...|+||++||+++-+|+++.|+|||+..+.++.|+..+|..|++...
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhccccc-ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 9999988765 4556899999999999887 678999999999999999999999999999999999999999999888
Q ss_pred h--cCCCCCCHHhHHHHHHHcC--CCcHHhHHHHHHHHHHHHhhhhcC----C---------CccccHHHHHHHhhhcCC
Q psy5649 160 T--KVPHSLSTDQIQQVAFITH--GFVGGDLATLLSNATSALLVETEG----T---------GQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 160 ~--~~~~~ls~~~~~~la~~t~--g~~~~di~~l~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~l~~~~~ 222 (305)
+ +.+..-+. +++.+|..+. ||||+||..|+++|...++++... + ...++..+|.+++++++|
T Consensus 693 kn~k~pl~~dV-dl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 693 KNTKPPLSSDV-DLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred ccCCCCCCccc-CHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 8 44444333 7888998876 999999999999999998865321 1 112456689999999988
Q ss_pred c
Q psy5649 223 S 223 (305)
Q Consensus 223 ~ 223 (305)
+
T Consensus 772 S 772 (802)
T KOG0733|consen 772 S 772 (802)
T ss_pred C
Confidence 7
No 9
>KOG0741|consensus
Probab=100.00 E-value=2.6e-40 Score=282.07 Aligned_cols=291 Identities=23% Similarity=0.443 Sum_probs=222.1
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC-eEEEEecccccccccchHHHHHHHHHHHHHh--------CCC
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKV-HTVVIQVADMFSKFYGEAEFRLKAAFDAALD--------HAP 73 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~ 73 (305)
.+.+++|++..+++|||||||||||.+||.|...++. +--.|++..+..+|.|++|..++++|..|.. +.-
T Consensus 246 ~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgL 325 (744)
T KOG0741|consen 246 EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGL 325 (744)
T ss_pred HHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCc
Confidence 4568899999999999999999999999999998875 3456899999999999999999999998874 233
Q ss_pred eEEEEcccccccCCCCCc----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHH
Q psy5649 74 SLLLLDNLDVLCTGRNRS----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRD 149 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 149 (305)
.|+++||+|++|..+.+. ..-...+.+++..++.... -+++.||+.||+.+-+|.+|.|||||+.++++..|++.
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~ 404 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEK 404 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCcc
Confidence 599999999999877553 3345788889888887665 57889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC--CCCC-HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC------------CCccccHHHHH
Q psy5649 150 QRAAILHCLLTKVP--HSLS-TDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG------------TGQVLSYDGVM 214 (305)
Q Consensus 150 ~r~~i~~~~l~~~~--~~ls-~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~ 214 (305)
.|++|++.+.++.. .-++ +-+++.+|..|.+|++++|..+++.|...++.+.-. ..-.++..||.
T Consensus 405 gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl 484 (744)
T KOG0741|consen 405 GRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFL 484 (744)
T ss_pred CceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHH
Confidence 99999986655432 2232 237999999999999999999999999988854321 12347788999
Q ss_pred HHhhhcCCc-hhhhhhcc----CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHH
Q psy5649 215 RALDHVKPS-AMRQVLVE----VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIA 289 (305)
Q Consensus 215 ~~l~~~~~~-~~~~~~~~----~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la 289 (305)
+++++++|. +......+ .-...|..- +.+.+.+ ...+....+.-..++-..+||.||||+|||+||
T Consensus 485 ~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v~~il~~----G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLA 555 (744)
T KOG0741|consen 485 NALEDVKPAFGISEEDLERFVMNGMINWGPP-----VTRILDD----GKLLVQQVKNSERSPLVSVLLEGPPGSGKTALA 555 (744)
T ss_pred HHHHhcCcccCCCHHHHHHHHhCCceeeccc-----HHHHHhh----HHHHHHHhhccccCcceEEEEecCCCCChHHHH
Confidence 999999987 22111111 111222211 1111111 001111123333344455999999999999999
Q ss_pred HHHhhhcCceeEEe
Q psy5649 290 KALATESKLNFISV 303 (305)
Q Consensus 290 ~~lA~~~~~~~~~v 303 (305)
.-+|..+++||+.|
T Consensus 556 A~iA~~S~FPFvKi 569 (744)
T KOG0741|consen 556 AKIALSSDFPFVKI 569 (744)
T ss_pred HHHHhhcCCCeEEE
Confidence 99999999999987
No 10
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=278.40 Aligned_cols=298 Identities=37% Similarity=0.572 Sum_probs=263.6
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
+..++.+++.++.+++++||+|+|||++++.++.. +..+..++.....+++.+..+..+...|..+....|+++++|++
T Consensus 7 ~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~ 85 (494)
T COG0464 7 PELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEI 85 (494)
T ss_pred HHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechh
Confidence 45788999999999999999999999999999999 66668888999999999999999999999999999999999999
Q ss_pred ccccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 82 DVLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 82 d~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
|.+.+.+... .......+.+...++... ... +.+++.++....++++++++++|+.++.+..|+...+..++....
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~ 163 (494)
T COG0464 86 DALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHT 163 (494)
T ss_pred hhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHH
Confidence 9999877652 344567788888888877 456 888999999999999999999999999999999999999888655
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhh---cCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVET---EGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
....... ......++..+.||+++|+..++..+......+. .......+.+++.++++...++ ..+....+...
T Consensus 164 ~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~ 240 (494)
T COG0464 164 RLMFLGP-PGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVT 240 (494)
T ss_pred hcCCCcc-cccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc--cccccCCCCcc
Confidence 5443332 4578899999999999999999999887777664 1344567788999999999887 66777889999
Q ss_pred cccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 237 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
|+++||++.++..+.+.+.||+++++.|...++.+++|+|||||||||||++|+++|.+++.+|++|+.
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999973
No 11
>KOG0734|consensus
Probab=100.00 E-value=1.1e-36 Score=260.18 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=187.9
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
|.++|=+-|++|||+||||||||.|||++|++.+.+|+..+++++..-+.|...++++++|..|++++||||||||+|.+
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchh--HHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC
Q psy5649 85 CTGRNRSDQ--ERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV 162 (305)
Q Consensus 85 ~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~ 162 (305)
-.++...+. .++.+.+++..|+.+.. +..|++|++||.++.||++|.|||||+.+|.+|.|+..-|.+|++.++.+.
T Consensus 409 G~kR~~~~~~y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki 487 (752)
T KOG0734|consen 409 GGKRNPSDQHYAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI 487 (752)
T ss_pred cccCCccHHHHHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC
Confidence 988877644 46788999999998877 788999999999999999999999999999999999999999999999987
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+..-+. +...+|..|.||+++||.+++.+|...+..+ +...++.++++-+-+++
T Consensus 488 ~~~~~V-D~~iiARGT~GFsGAdLaNlVNqAAlkAa~d---ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 488 PLDEDV-DPKIIARGTPGFSGADLANLVNQAALKAAVD---GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred CcccCC-CHhHhccCCCCCchHHHHHHHHHHHHHHHhc---CcccccHHHHhhhhhhe
Confidence 766555 6888999999999999999999998877644 33445556665554443
No 12
>KOG0738|consensus
Probab=100.00 E-value=2.9e-36 Score=248.82 Aligned_cols=213 Identities=28% Similarity=0.427 Sum_probs=188.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
..+.+++|++||||||||.||+++|.+.+..|+.|+.+.+.+++.|+.|+.++-+|+.|+..+|++|||||||.++..+.
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG 321 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG 321 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Cc---hhHHHHHHHHHHHHhhhcccCCe---EEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 90 RS---DQERRLLSCLVTQVDRLHELQAC---VVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 90 ~~---~~~~~~~~~l~~~~~~~~~~~~~---~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
.. ...++..+.|+.+|+........ |+|+++||.+++||.+++| ||+..|.+|.|+...|..+++..+....
T Consensus 322 ~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 322 GSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVE 399 (491)
T ss_pred CccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcccc
Confidence 54 45678889999999988765444 9999999999999999999 9999999999999999999998877655
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc--------------CCCccccHHHHHHHhhhcCCchh
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETE--------------GTGQVLSYDGVMRALDHVKPSAM 225 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~ 225 (305)
..-+ -.+..++..++||+++||..+|++|....+++.. ....++...||..|+.+.+|+..
T Consensus 400 ~~~~-~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 400 LDDP-VNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred CCCC-ccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 4433 3788999999999999999999999998886422 12246788899999999998754
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.5e-35 Score=259.40 Aligned_cols=213 Identities=23% Similarity=0.406 Sum_probs=186.2
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
.++++++.++++||+||||||||++++++|++++.+++.++++.+.+++.|+.+..++++|+.+...+||||||||+|.+
T Consensus 251 ~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~ 330 (489)
T CHL00195 251 ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKA 330 (489)
T ss_pred HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCC---chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhc
Q psy5649 85 CTGRNR---SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 85 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
+.++.. .....+.+..++..++. .+.++++|+|||.++.+|+++.|+|||+..++++.|+..+|.+|++.++.+
T Consensus 331 ~~~~~~~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 331 FSNSESKGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hccccCCCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 865332 23445666777776653 367899999999999999999999999999999999999999999998887
Q ss_pred CC-CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCch
Q psy5649 162 VP-HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 162 ~~-~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (305)
.. ...+..++..++..|+||+++||..++.+|...+..+. ..++.+|+.+++..+.|..
T Consensus 408 ~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~----~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 408 FRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK----REFTTDDILLALKQFIPLA 467 (489)
T ss_pred cCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHhcCCCc
Confidence 53 33445679999999999999999999999988776542 3578999999999999863
No 14
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.5e-35 Score=228.68 Aligned_cols=208 Identities=24% Similarity=0.453 Sum_probs=181.1
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
|+-=.+++||+|||||||||.+|+++|++.+.+++.+++..+++.+.|+..++++++|++|...+|||+||||+|.+.-+
T Consensus 146 Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLd 225 (368)
T COG1223 146 FGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALD 225 (368)
T ss_pred hcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhh
Confidence 44446789999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCCc---hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 88 RNRS---DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 88 ~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
+.-. ......++.++..++++.+ +..++.|++||.++.||+++++ ||..+|+|..|+.++|..|++.+.+..|.
T Consensus 226 RryQelRGDVsEiVNALLTelDgi~e-neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Pl 302 (368)
T COG1223 226 RRYQELRGDVSEIVNALLTELDGIKE-NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPL 302 (368)
T ss_pred hhHHHhcccHHHHHHHHHHhccCccc-CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCC
Confidence 5322 2334677889999999886 7888999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHH-HHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNAT-SALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
.++. ..+.++..|.|++++||..=+..+. ..++.+ ..+.+..+|+..++.+..+
T Consensus 303 pv~~-~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e---d~e~v~~edie~al~k~r~ 357 (368)
T COG1223 303 PVDA-DLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE---DREKVEREDIEKALKKERK 357 (368)
T ss_pred cccc-CHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh---chhhhhHHHHHHHHHhhcc
Confidence 8887 5999999999999999987555443 333333 4557788999999987543
No 15
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.8e-34 Score=247.02 Aligned_cols=215 Identities=25% Similarity=0.418 Sum_probs=185.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..|+.+++.++.++||+||||||||++++++|++++.+++.+.++++...+.++.+..++.+|..+...+|+||||||+|
T Consensus 169 ~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID 248 (398)
T PTZ00454 169 ELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 248 (398)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHh
Confidence 47889999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.... ...+.+|++||.++.+++++.++|||+.+|+++.|+..+|..|++.
T Consensus 249 ~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~ 327 (398)
T PTZ00454 249 SIATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQT 327 (398)
T ss_pred hhccccccccCCccHHHHHHHHHHHHHhhccCC-CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHH
Confidence 998665321 1223455566666665444 4578899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
++.+.....+ -++..++..|+||+++||.++|.+|...++++ ....++.+||.+++.+...
T Consensus 328 ~~~~~~l~~d-vd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~---~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 328 ITSKMNLSEE-VDLEDFVSRPEKISAADIAAICQEAGMQAVRK---NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHhcCCCCcc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHHh
Confidence 8877654433 36889999999999999999999999888866 3457889999999988644
No 16
>KOG0731|consensus
Probab=100.00 E-value=1.8e-34 Score=260.17 Aligned_cols=214 Identities=28% Similarity=0.416 Sum_probs=193.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..|+.+|.+.|+++||+||||||||.||+++|++.+.+|+.++++++...+.+....+++.+|..|+.+.|||+||||+|
T Consensus 334 ~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideid 413 (774)
T KOG0731|consen 334 EQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEID 413 (774)
T ss_pred HHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccc
Confidence 46899999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred cccCCCC------CchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 83 VLCTGRN------RSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 83 ~l~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
.+...+. ..+.....+++++..++.... ...++++++||.++.+|+++.|+|||++.|.++.|+...|.+|++
T Consensus 414 a~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 414 AVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred cccccccccccCCCChHHHHHHHHHHHHhcCCcC-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 9987763 124556788999999999877 588999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
.+++......+..++..+|..|+||+++||.+++.++...+.++ ....++..++.+++++.
T Consensus 493 ~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~---~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 493 VHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK---GLREIGTKDLEYAIERV 553 (774)
T ss_pred HHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh---ccCccchhhHHHHHHHH
Confidence 98887776655557777999999999999999999999998877 45567788888888854
No 17
>KOG0739|consensus
Probab=100.00 E-value=4.3e-35 Score=234.28 Aligned_cols=189 Identities=28% Similarity=0.504 Sum_probs=176.2
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
..+..++|||||||||||.|++++|-+.+..|+.|+.+++.+++.|+.++.++++|+.|+.+.|+|+||||+|.+|..++
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Cc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 90 RS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 90 ~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
.. +..++....|+-+|+........+.|+++||.++.||.++|| ||+..|.+|.|+...|..+++.++...++.|.
T Consensus 243 enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT 320 (439)
T KOG0739|consen 243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLT 320 (439)
T ss_pred CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccc
Confidence 54 455778888999999888878999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
..+...++..|+||+++||..+++++...-++.
T Consensus 321 ~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 321 EQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999999999999999999987766554
No 18
>KOG0736|consensus
Probab=100.00 E-value=9.5e-34 Score=251.41 Aligned_cols=217 Identities=25% Similarity=0.439 Sum_probs=189.5
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
.++.+..+||||||||||||.+||++|-+...+|..|.+.+++..|.|+.|.+++++|++|+..+|||||+||+|.+.++
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~ 779 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPN 779 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCcc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc----hhHHHHHHHHHHHHhhhcc-cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCC-CHHHHHHHHHHHHhc
Q psy5649 88 RNRS----DQERRLLSCLVTQVDRLHE-LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVP-SRDQRAAILHCLLTK 161 (305)
Q Consensus 88 ~~~~----~~~~~~~~~l~~~~~~~~~-~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p-~~~~r~~i~~~~l~~ 161 (305)
+..+ ....+.+++++..++.+.+ ....++||++||+++-||++|.|+|||+.-+++.++ +.+.+..+++...++
T Consensus 780 RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 780 RGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK 859 (953)
T ss_pred CCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH
Confidence 8654 4557899999999999987 568899999999999999999999999999999654 677888999988887
Q ss_pred CCCCCCHHhHHHHHHH-cCCCcHHhHHHHHHHHHHHHhhhhc--------------CCCccccHHHHHHHhhhcCCchh
Q psy5649 162 VPHSLSTDQIQQVAFI-THGFVGGDLATLLSNATSALLVETE--------------GTGQVLSYDGVMRALDHVKPSAM 225 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~-t~g~~~~di~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~ 225 (305)
...+-+. ++..+|+. -..|||+|+-++|.+|...++.+.. .....++.+||.++++++.|+..
T Consensus 860 FkLdedV-dL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 860 FKLDEDV-DLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred ccCCCCc-CHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 7766666 56667765 5789999999999999988875422 22345788999999999998743
No 19
>KOG0727|consensus
Probab=100.00 E-value=1.1e-33 Score=221.54 Aligned_cols=214 Identities=26% Similarity=0.440 Sum_probs=186.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++|+..|+.++.++|+|||||||||.|++++|+.....|+.|.++.+..+|.|+..+..+.+|+.|+.++|+|+||||+|
T Consensus 179 ~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideid 258 (408)
T KOG0727|consen 179 DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEID 258 (408)
T ss_pred HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+..++-+. ...++.+-.++.+|+.+.. ..++-+|.+||+.+.+++++.++||.++.|+||.|+..+++-++..
T Consensus 259 aiatkrfdaqtgadrevqril~ellnqmdgfdq-~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~t 337 (408)
T KOG0727|consen 259 AIATKRFDAQTGADREVQRILIELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 337 (408)
T ss_pred hHhhhhccccccccHHHHHHHHHHHHhccCcCc-ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHh
Confidence 998776443 2234555666677776655 5678899999999999999999999999999999999999999988
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
...+....-+. +++.+....+..+++||.++|++|-..+.++ +...+...||.++-....
T Consensus 338 itskm~ls~~v-dle~~v~rpdkis~adi~aicqeagm~avr~---nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 338 ITSKMNLSDEV-DLEDLVARPDKISGADINAICQEAGMLAVRE---NRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred hhhcccCCccc-CHHHHhcCccccchhhHHHHHHHHhHHHHHh---cceeeeHHHHHHHHHhhc
Confidence 77776655444 6788888899999999999999999998887 556777888888776543
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.7e-33 Score=262.77 Aligned_cols=220 Identities=28% Similarity=0.496 Sum_probs=191.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.++.+++.++.++||+||||||||++++++|++++.+++.++++++.+++.|+.+..++.+|+.|....|||+||||+|
T Consensus 477 ~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid 556 (733)
T TIGR01243 477 EIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEID 556 (733)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChh
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc---hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 83 VLCTGRNRS---DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 83 ~l~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
.+++.+... ....+.+.+++..++.+.. ...+++|++||.++.+++++.|+|||+..++++.|+..+|.+||+.+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~-~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLLTEMDGIQE-LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHHHHhhcccC-CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 999876532 2345677888888887665 567999999999999999999999999999999999999999999777
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC---------------CCccccHHHHHHHhhhcCCch
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG---------------TGQVLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~ 224 (305)
++.+..-+ .++..+|..|+||+++||..++++|...++++... ....++.+||.+++++.+|+.
T Consensus 636 ~~~~~~~~-~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 636 RSMPLAED-VDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred cCCCCCcc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 76554432 36899999999999999999999999888764211 113577889999999888874
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.4e-33 Score=242.79 Aligned_cols=220 Identities=25% Similarity=0.453 Sum_probs=187.2
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..|+.+++.++.++||+||||||||++++++|++++.+++.++++++...+.|+.+..++.+|+.+...+|+||||||+|
T Consensus 155 ~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD 234 (389)
T PRK03992 155 ELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEID 234 (389)
T ss_pred HHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.... .+.+.+|++||.++.+++++.++|||+..|+++.|+..+|.+|++.
T Consensus 235 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKI 313 (389)
T ss_pred hhhcccccCCCCccHHHHHHHHHHHHhccccCC-CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHH
Confidence 998665432 1223344455555554433 4678899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhh
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQ 227 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 227 (305)
++.+....-+ .++..++..|+||+++||.+++++|...++++ ....++.+||.+|+...+++....
T Consensus 314 ~~~~~~~~~~-~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~---~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 314 HTRKMNLADD-VDLEELAELTEGASGADLKAICTEAGMFAIRD---DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HhccCCCCCc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhcccccc
Confidence 8776554433 36889999999999999999999999988876 345688999999999998765443
No 22
>KOG0728|consensus
Probab=100.00 E-value=3e-33 Score=218.86 Aligned_cols=215 Identities=25% Similarity=0.417 Sum_probs=188.5
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
.++|+++|+..++++|||||||+|||.|++++|....+.|+.|+++.+..++.|+..+..+++|-.|+.++|+|+|+||+
T Consensus 170 PELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdei 249 (404)
T KOG0728|consen 170 PELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEI 249 (404)
T ss_pred HHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 82 DVLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 82 d~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
|.+-..+.++ ...++.+-.++++++.+.. ..++-+|.+||+.+-+|+++.|+||.++.|+||+|++..|.+|++
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfea-tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilk 328 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA-TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILK 328 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhcccccc-ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHH
Confidence 9998665332 2234555667777777766 567888999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
.+.++.... .+-+++.+|....|.+++++..+|.+|-.++++| ....++.+||.-+..+.-
T Consensus 329 ihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alre---rrvhvtqedfemav~kvm 389 (404)
T KOG0728|consen 329 IHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRE---RRVHVTQEDFEMAVAKVM 389 (404)
T ss_pred Hhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHH---hhccccHHHHHHHHHHHH
Confidence 766655443 3447999999999999999999999999999987 455678899988877653
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=247.94 Aligned_cols=218 Identities=30% Similarity=0.544 Sum_probs=194.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|...++.++.++||+||||||||++++++|.+++.+|+.++.+++.+++.|++++.++++|..|...+|||+||||+|
T Consensus 266 e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiD 345 (494)
T COG0464 266 ELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEID 345 (494)
T ss_pred HHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchh
Confidence 34666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCch--hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRSD--QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+++.+.... ...+.+.+++..++.+.. ...++||++||.++.+++++.|+|||+..+.++.|+..+|.+|++.++.
T Consensus 346 s~~~~r~~~~~~~~~r~~~~lL~~~d~~e~-~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 346 SLASGRGPSEDGSGRRVVGQLLTELDGIEK-AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhhccCCCCCchHHHHHHHHHHHHhcCCCc-cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 9998886542 235788899999987776 5668899999999999999999999999999999999999999998888
Q ss_pred cCCCC-CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 161 KVPHS-LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 161 ~~~~~-ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
+.... ...-+++.++..|+||+++||..++++|....+.+.. ...++.+||.+++...+|+
T Consensus 425 ~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 425 DKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHhcCCC
Confidence 65554 3345789999999999999999999999998887643 5578899999999997776
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=239.01 Aligned_cols=214 Identities=22% Similarity=0.406 Sum_probs=183.1
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
.+|+++++.++.++||+||||||||++++++|++++.+++.+.++++...+.++.+..++.+|..+....|+|+||||+|
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID 286 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEID 286 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.+.. ...+.+|++||.++.+++++.++|||+.+|+++.|+..+|.+|++.
T Consensus 287 ~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 287 AIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred HHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHH
Confidence 998765322 1123344556666665543 4568899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
++.+....-+ .++..++..|+||+++||.++|..|...++++ ....++.+||.+|+++..
T Consensus 366 ~~~k~~l~~d-vdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~---~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 366 HTSKMTLAED-VDLEEFIMAKDELSGADIKAICTEAGLLALRE---RRMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHhcCCCCcC-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---cCCccCHHHHHHHHHHHH
Confidence 8776554322 36888999999999999999999999888876 355788999999988764
No 25
>KOG0735|consensus
Probab=100.00 E-value=1.3e-32 Score=242.31 Aligned_cols=197 Identities=29% Similarity=0.478 Sum_probs=179.1
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
.++|.+..+.-..+||||||||||||.|+.++|...+..++.|.+.++.++|.|..|+.++.+|.+|...+|||||+||+
T Consensus 690 p~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 690 PQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEF 769 (952)
T ss_pred hHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCC--chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 82 DVLCTGRNR--SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 82 d~l~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
|.+.+.+.. .....+.+.+++.++++... -..++++++|++++-+|+++.|+||++..+.-+.|+..+|++|++.+.
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 999998754 35667899999999998776 578899999999999999999999999999999999999999999665
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
++....- .-+++.+|..|+||+++||..++-+|...+..+
T Consensus 849 ~s~~~~~-~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 849 NSLLKDT-DVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred hccCCcc-ccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 5444443 347999999999999999999999999887654
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=3.6e-32 Score=261.78 Aligned_cols=212 Identities=20% Similarity=0.238 Sum_probs=173.0
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccc------------------------------
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKF------------------------------ 53 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~------------------------------ 53 (305)
+...+|+.+++||||+||||||||.|||++|++.+++++.|+++++...+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 45678999999999999999999999999999999999999999887543
Q ss_pred -----------cchH--HHHHHHHHHHHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcc--cCCeEEEE
Q psy5649 54 -----------YGEA--EFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHE--LQACVVLL 118 (305)
Q Consensus 54 -----------~~~~--~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~i 118 (305)
.+.. ...++.+|+.|++++||||+|||+|.+..+. .....+++++..++...+ ....|+||
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----s~~ltL~qLLneLDg~~~~~s~~~VIVI 1776 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----SNYLSLGLLVNSLSRDCERCSTRNILVI 1776 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----cceehHHHHHHHhccccccCCCCCEEEE
Confidence 1112 2348899999999999999999999997652 122336777777876532 24679999
Q ss_pred EEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCH--HhHHHHHHHcCCCcHHhHHHHHHHHHHH
Q psy5649 119 AVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLST--DQIQQVAFITHGFVGGDLATLLSNATSA 196 (305)
Q Consensus 119 ~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~--~~~~~la~~t~g~~~~di~~l~~~~~~~ 196 (305)
|+||.++.||+|+.|+|||+..|.++.|+..+|.+++..++...+..+.. .++..+|..|.||+|+||++++.+|...
T Consensus 1777 AATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred EeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887554433333332 2588999999999999999999999998
Q ss_pred HhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 197 LLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
++.+ ....+..+++..|+.+...
T Consensus 1857 Airq---~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1857 SITQ---KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred HHHc---CCCccCHHHHHHHHHHHHh
Confidence 8876 3456778888888887753
No 27
>KOG0652|consensus
Probab=100.00 E-value=1.4e-32 Score=216.38 Aligned_cols=215 Identities=26% Similarity=0.410 Sum_probs=186.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+-|+++++.+++++|+|||||+|||.++|+.|...+..|..+.+..+...+.|+..+..+..|..|+...|+|+||||+|
T Consensus 195 ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElD 274 (424)
T KOG0652|consen 195 EKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELD 274 (424)
T ss_pred HHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCch-----hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRSD-----QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+-.++.+++ ..++.+-.++.+++.+.. ...+-+|++||+.+-++|++.|+||.++.|+||.|+++.|..|++.
T Consensus 275 AIGtKRfDSek~GDREVQRTMLELLNQLDGFss-~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 275 AIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred hhccccccccccccHHHHHHHHHHHHhhcCCCC-ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 9987765542 223445556666666655 6789999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+.++....-+. ..+.+|..|++|+++...++|.+|-..++++. ...++.+||++.+.+...
T Consensus 354 HsRKMnv~~Dv-NfeELaRsTddFNGAQcKAVcVEAGMiALRr~---atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 354 HSRKMNVSDDV-NFEELARSTDDFNGAQCKAVCVEAGMIALRRG---ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred hhhhcCCCCCC-CHHHHhhcccccCchhheeeehhhhHHHHhcc---cccccHHHHHHHHHHHHH
Confidence 77776665554 68899999999999999999999999998763 335667888887766543
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.7e-32 Score=243.44 Aligned_cols=213 Identities=27% Similarity=0.428 Sum_probs=182.4
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.|.+++...+.++||+||||||||++++++|++.+.+++.++++++...+.+.....++.+|+.++..+||||||||+|.
T Consensus 79 ~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~ 158 (495)
T TIGR01241 79 KFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDA 158 (495)
T ss_pred HHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 46677888999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred ccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 84 LCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 84 l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
++..+... +...+.+..++..++.+.+ +..+++|++||.++.+++++.|+|||+..++++.|+..+|.+|++.+
T Consensus 159 l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 159 VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred hhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 98765431 2334666777777776655 56789999999999999999999999999999999999999999988
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
+...+.. +..++..++..|.||+++||..+++++...+.++ +...++.+++.++++...
T Consensus 238 l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~---~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 238 AKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARK---NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred HhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHh
Confidence 8765443 3447889999999999999999999997766654 334677888888887653
No 29
>KOG0726|consensus
Probab=100.00 E-value=6.9e-33 Score=221.04 Aligned_cols=214 Identities=23% Similarity=0.447 Sum_probs=184.3
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
.++|+..+++++++|.|||+||||||.||+++|+.....|..+-+++++.+|.|+..+..+++|+.|..++|+|+||||+
T Consensus 208 PE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEI 287 (440)
T KOG0726|consen 208 PEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 287 (440)
T ss_pred HHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehh
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCc--hhH---HHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 82 DVLCTGRNRS--DQE---RRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 82 d~l~~~~~~~--~~~---~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
|++-..+-++ ... ++.+-.++++++.+.. ++.+-||.+||..+.+||++.|+||.++.|+|+.|+...+..|++
T Consensus 288 dAiGtKRyds~SggerEiQrtmLELLNQldGFds-rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 288 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred hhhccccccCCCccHHHHHHHHHHHHHhccCccc-cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 9998766433 222 3444456666666666 788999999999999999999999999999999999999999998
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
.+..+....-+. .++.+...-+.++++||.++|.+|-.+++++ ....++.+||.++.+.+
T Consensus 367 IHTs~Mtl~~dV-nle~li~~kddlSGAdIkAictEaGllAlRe---rRm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 367 IHTSRMTLAEDV-NLEELIMTKDDLSGADIKAICTEAGLLALRE---RRMKVTMEDFKKAKEKV 426 (440)
T ss_pred Eeecccchhccc-cHHHHhhcccccccccHHHHHHHHhHHHHHH---HHhhccHHHHHHHHHHH
Confidence 666655544444 5777777889999999999999999999987 33456778888887765
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=238.15 Aligned_cols=211 Identities=28% Similarity=0.447 Sum_probs=188.0
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
|..+|..-|++++|+||||||||.|+|++|++.+.+|+.++++++..-+.|....+++++|..|++++|||+||||+|.+
T Consensus 175 y~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 175 YQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred hHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
-..+.. .+...+.+++++..++.+.. +..|+++++||+++-+|++|.|+|||++++.++.|+...|.+|++.++
T Consensus 255 Gr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 255 GRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred ccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 876632 25556789999999999885 688999999999999999999999999999999999999999999888
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
++.+..-+. ++..+|..|.||+++|+.+++.+|.....++ +...++..++.++.+++
T Consensus 334 ~~~~l~~~V-dl~~iAr~tpGfsGAdL~nl~NEAal~aar~---n~~~i~~~~i~ea~drv 390 (596)
T COG0465 334 KNKPLAEDV-DLKKIARGTPGFSGADLANLLNEAALLAARR---NKKEITMRDIEEAIDRV 390 (596)
T ss_pred hcCCCCCcC-CHHHHhhhCCCcccchHhhhHHHHHHHHHHh---cCeeEeccchHHHHHHH
Confidence 877766444 5777999999999999999999999998876 44455666677776665
No 31
>KOG0737|consensus
Probab=99.98 E-value=2.1e-31 Score=219.73 Aligned_cols=189 Identities=28% Similarity=0.442 Sum_probs=167.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
..++.+|||+||||||||.+|+++|.+.+..|+.|+.+.+.+++.|+.++..+.+|..|.+.+||++||||+|.++..+.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR 203 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred CchhH--HHHHHHHHHHHhhhcccC-CeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 90 RSDQE--RRLLSCLVTQVDRLHELQ-ACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 90 ~~~~~--~~~~~~l~~~~~~~~~~~-~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
..+.+ .....+|+...+.+.... ..|+|+++||++.+++.++.| |+...++++.|+..+|.+|++-+++....+-
T Consensus 204 s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~ 281 (386)
T KOG0737|consen 204 STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLED 281 (386)
T ss_pred cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCc
Confidence 43322 345567777777776643 479999999999999999999 9999999999999999999998888766653
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhh
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVET 201 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~ 201 (305)
+. +++++|..|+|||++||..+|..|....+++-
T Consensus 282 ~v-D~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 282 DV-DLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred cc-CHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 33 79999999999999999999999988777653
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.2e-30 Score=238.31 Aligned_cols=211 Identities=28% Similarity=0.462 Sum_probs=179.3
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
|..++...+.++||+||||||||++++++|++.+.+++.++++++...+.+.....++.+|..+...+||||||||+|.+
T Consensus 208 ~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 208 FTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred HhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhh
Confidence 56678888999999999999999999999999999999999999887777888889999999999999999999999999
Q ss_pred cCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
...+.. .+...+.+..++..++.... +..+++|++||.++.+++++.++|||+..+.++.|+..+|.+|++.++
T Consensus 288 ~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~-~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 288 GRQRGAGIGGGNDEREQTLNQLLTEMDGFKG-NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHA 366 (638)
T ss_pred hhcccCCCCCCcHHHHHHHHHHHhhhccccC-CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHH
Confidence 865432 13334566777777766544 567899999999999999999999999999999999999999999888
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+..... +..+++.+|..|.||+++||..++.++...+.++ +...++.+++..++.+.
T Consensus 367 ~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~---~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 367 RNKKLS-PDVSLELIARRTPGFSGADLANLLNEAAILTARR---KKATITMKEIDTAIDRV 423 (638)
T ss_pred hhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh---CCCCcCHHHHHHHHHHH
Confidence 764433 3447899999999999999999999998776654 33457788888888765
No 33
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=2.5e-30 Score=215.62 Aligned_cols=188 Identities=18% Similarity=0.246 Sum_probs=154.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHh-----CCCeEEE
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALD-----HAPSLLL 77 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~vl~ 77 (305)
.++..++++++.+++|+||||||||.+++++|++++.+++.++++++.+++.|+.++.++++|+.|.. .+|||||
T Consensus 138 n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLF 217 (413)
T PLN00020 138 NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLF 217 (413)
T ss_pred hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 34455789999999999999999999999999999999999999999999999999999999999985 4699999
Q ss_pred EcccccccCCCCCc--hhHHHHH-HHHHHHHhhh-----------cccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 78 LDNLDVLCTGRNRS--DQERRLL-SCLVTQVDRL-----------HELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 78 ide~d~l~~~~~~~--~~~~~~~-~~l~~~~~~~-----------~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
|||+|.+++.+... ....+.+ .+|+..++.. .+....+++|+|||.++.|+++++|+|||+..+
T Consensus 218 IDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i-- 295 (413)
T PLN00020 218 INDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY-- 295 (413)
T ss_pred EehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--
Confidence 99999999887543 2223444 6777777642 133577999999999999999999999999875
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCC----cHHhHHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF----VGGDLATLLSNAT 194 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~----~~~di~~l~~~~~ 194 (305)
..|+.++|.+|++.++++. .++..++.+++..++|- .++--..+..++.
T Consensus 296 ~lPd~e~R~eIL~~~~r~~--~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v 348 (413)
T PLN00020 296 WAPTREDRIGVVHGIFRDD--GVSREDVVKLVDTFPGQPLDFFGALRARVYDDEV 348 (413)
T ss_pred CCCCHHHHHHHHHHHhccC--CCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHH
Confidence 4899999999999888764 56678899999998874 4443344444443
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=5.7e-30 Score=223.14 Aligned_cols=213 Identities=27% Similarity=0.461 Sum_probs=178.0
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..|+.+++.++.+++|+||||||||++++++|++++.+++.+.++++...+.+.....++.+|+.+....|+||+|||+|
T Consensus 146 ~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD 225 (364)
T TIGR01242 146 ELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEID 225 (364)
T ss_pred HHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhh
Confidence 35778899999999999999999999999999999999999998888888888889999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+...+... ....+.+..++..++.+.. .+++.+|++||.++.+++++.++|||+..++++.|+..+|.+|++.
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~ 304 (364)
T TIGR01242 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP-RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKI 304 (364)
T ss_pred hhccccccCCCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHH
Confidence 997654322 1122344445555554433 4678899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
++.+.....+ .++..++..|+||+++||.+++..|...++++ ....++.+||.+++.+.
T Consensus 305 ~~~~~~l~~~-~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~---~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 305 HTRKMKLAED-VDLEAIAKMTEGASGADLKAICTEAGMFAIRE---ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHhcCCCCcc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---CCCccCHHHHHHHHHHh
Confidence 7765443322 36889999999999999999999999888765 44568889999988754
No 35
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=9.3e-30 Score=239.08 Aligned_cols=287 Identities=21% Similarity=0.296 Sum_probs=202.2
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~ 70 (305)
++++.+.-...++++|+||||||||++++.+|..+ +..++.++++.+. .++.|+.+..++.+|+.+..
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~ 272 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEK 272 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhc
Confidence 45556666778899999999999999999999987 7788999988887 46789999999999999988
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEccC
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~~ 145 (305)
..++||||||+|.++......+........+...+. .+.+.+|++||.. -+.++++.+ ||. .++++.
T Consensus 273 ~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~ 344 (731)
T TIGR02639 273 EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGE 344 (731)
T ss_pred cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCC
Confidence 889999999999998654322211122233334333 5678899999873 357899998 995 799999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCCCc-----HHhHHHHHHHHHHHHhhhhc-CCCccccHHHHHH
Q psy5649 146 PSRDQRAAILHCLLTK----VPHSLSTDQIQQVAFITHGFV-----GGDLATLLSNATSALLVETE-GTGQVLSYDGVMR 215 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g~~-----~~di~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (305)
|+..++..|++....+ ....++++.++.++..+..|- |.....++.++.....-.+. .....++.+|+.+
T Consensus 345 p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~ 424 (731)
T TIGR02639 345 PSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIEN 424 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHH
Confidence 9999999999865543 345678888999988887774 44445555555433221111 1234577788888
Q ss_pred HhhhcCCchhhhh-------hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCC---Ccc-eeeecCCCch
Q psy5649 216 ALDHVKPSAMRQV-------LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKP---PRG-ILMFGPPGCS 284 (305)
Q Consensus 216 ~l~~~~~~~~~~~-------~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~g-ill~GppG~G 284 (305)
++.....-..... ...........|.|++++++.+.+.+.+ .+.|+.. |.| ++|+||||||
T Consensus 425 ~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvG 496 (731)
T TIGR02639 425 VVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVG 496 (731)
T ss_pred HHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCcc
Confidence 8877642211000 0011112233456666666666655442 2344432 344 8999999999
Q ss_pred HHHHHHHHhhhcCceeEEeeC
Q psy5649 285 KTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 285 KT~la~~lA~~~~~~~~~v~~ 305 (305)
||++|+++|..++.+|+.+++
T Consensus 497 KT~lA~~la~~l~~~~~~~d~ 517 (731)
T TIGR02639 497 KTELAKQLAEALGVHLERFDM 517 (731)
T ss_pred HHHHHHHHHHHhcCCeEEEeC
Confidence 999999999999999998874
No 36
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=9.1e-30 Score=225.32 Aligned_cols=185 Identities=24% Similarity=0.422 Sum_probs=150.1
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCe----------EEEEecccccccccchHHHHHHHHHHHHHhC-
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH----------TVVIQVADMFSKFYGEAEFRLKAAFDAALDH- 71 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~----------~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~- 71 (305)
..|+.++++++.++|||||||||||++++++|++++.+ ++.++.+++..++.++.+..++.+|+.++..
T Consensus 206 ~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 206 ELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA 285 (512)
T ss_pred HHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999998644 5567778888889999999999999998864
Q ss_pred ---CCeEEEEcccccccCCCCC---chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 72 ---APSLLLLDNLDVLCTGRNR---SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 72 ---~~~vl~ide~d~l~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
.|+|+||||+|.++..+.. .+.....+..++..++.+.. .+.+++|++||.++.||+++.|+|||+.+|+++.
T Consensus 286 ~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~-~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~ 364 (512)
T TIGR03689 286 SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES-LDNVIVIGASNREDMIDPAILRPGRLDVKIRIER 364 (512)
T ss_pred hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc-CCceEEEeccCChhhCCHhhcCccccceEEEeCC
Confidence 6999999999999977643 23445667888888887765 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
|+..+|.+|++.++... ..++. + ...+.|++++++.++++++.
T Consensus 365 Pd~e~r~~Il~~~l~~~-l~l~~-~----l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 365 PDAEAAADIFSKYLTDS-LPLDA-D----LAEFDGDREATAAALIQRAV 407 (512)
T ss_pred CCHHHHHHHHHHHhhcc-CCchH-H----HHHhcCCCHHHHHHHHHHHH
Confidence 99999999999887642 12222 1 12346666666666666654
No 37
>KOG0729|consensus
Probab=99.97 E-value=1.1e-30 Score=206.23 Aligned_cols=215 Identities=20% Similarity=0.358 Sum_probs=184.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+-|.++++.+++++|+|||||+|||..+|++|+..+.-|+.|-++.+..+|.|+..+..+++|+.|+....|++|+||+|
T Consensus 201 erfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martkkaciiffdeid 280 (435)
T KOG0729|consen 201 ERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 280 (435)
T ss_pred HHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccc
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+-..+-+. ...++.+-.++.+++.+.. .+++-|+.+||+++.+++++.++||.++.++|..|+.+.|..|++.
T Consensus 281 aiggarfddg~ggdnevqrtmleli~qldgfdp-rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 281 AIGGARFDDGAGGDNEVQRTMLELINQLDGFDP-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred cccCccccCCCCCcHHHHHHHHHHHHhccCCCC-CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 987655332 2334555566777777665 6778888999999999999999999999999999999999999987
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+.+....+-+- ..+.+|..+.+-++++|+.+|.+|-.++++. .....+.+||.+++.+...
T Consensus 360 haksmsverdi-r~ellarlcpnstgaeirsvcteagmfaira---rrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 360 HAKSMSVERDI-RFELLARLCPNSTGAEIRSVCTEAGMFAIRA---RRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred eccccccccch-hHHHHHhhCCCCcchHHHHHHHHhhHHHHHH---HhhhhhHHHHHHHHHHHHH
Confidence 66655544333 5778899999999999999999999988854 3345677899998887644
No 38
>KOG0732|consensus
Probab=99.97 E-value=3.3e-30 Score=238.61 Aligned_cols=287 Identities=25% Similarity=0.363 Sum_probs=224.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEE
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLL 77 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ 77 (305)
+.|+++++.+++++|++||||||||..++++|... +..++.-++.++.+++.|+.+++++.+|++|+++.|+|+|
T Consensus 289 E~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIf 368 (1080)
T KOG0732|consen 289 EFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIF 368 (1080)
T ss_pred hHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEe
Confidence 57889999999999999999999999999999876 3456667889999999999999999999999999999999
Q ss_pred EcccccccCCCCCch--hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH
Q psy5649 78 LDNLDVLCTGRNRSD--QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL 155 (305)
Q Consensus 78 ide~d~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~ 155 (305)
+||+|-+.+-+.... .....++.++..|+.+.. .+.+++|++||+++.++++++|+|||++++.++.|+...|..|+
T Consensus 369 fdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds-RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il 447 (1080)
T KOG0732|consen 369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS-RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKIL 447 (1080)
T ss_pred ccccccccccccchHHHhhhhHHHHHHHhccCCCC-CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHH
Confidence 999999998875532 234788899999999887 78899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc-------------CCCccccHHHHHHHhhhcCC
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETE-------------GTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~ 222 (305)
..+-.+....++......+|..|.||-++||+++|..|....+++.. .....+...+|..++.+..+
T Consensus 448 ~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 448 DIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred HHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 87777777788888999999999999999999999999998875422 12233677889999998888
Q ss_pred chhhh-hhccCCCCCccc-ccch-------------HHHHHHHHHHhhccCCCHHHHHhcCC--CC----CcceeeecCC
Q psy5649 223 SAMRQ-VLVEVPNVKWSD-IGGQ-------------DEVKLKLRQSVEWPLKHPEAFARLGI--KP----PRGILMFGPP 281 (305)
Q Consensus 223 ~~~~~-~~~~~~~~~~~~-i~g~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~--~~----~~gill~Gpp 281 (305)
+..+. .+...|....-- +-+. +.....+.+...| .++.+.. .. ...+++.|..
T Consensus 528 s~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~------~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 528 SSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKL------LVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred CCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHH------HHHhhhcccchhhhcCcHHhcCCCc
Confidence 75553 333333221111 1101 1111112222111 1111111 11 1238889999
Q ss_pred CchHHHHHHHHhhhc
Q psy5649 282 GCSKTMIAKALATES 296 (305)
Q Consensus 282 G~GKT~la~~lA~~~ 296 (305)
|.|-+.+..+|-..+
T Consensus 602 ~~g~~~lg~aIlh~~ 616 (1080)
T KOG0732|consen 602 GSGQDYLGPAILHRL 616 (1080)
T ss_pred ccccCcccHHHHHHH
Confidence 999999999987665
No 39
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=1.5e-29 Score=233.68 Aligned_cols=211 Identities=28% Similarity=0.436 Sum_probs=180.7
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
+..++...+.+++|+||||||||+++++++++++.+++.++++++...+.+.....++.+|..+...+|||+||||+|.+
T Consensus 177 ~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 177 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred HHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhh
Confidence 34566677788999999999999999999999999999999999988888888899999999999999999999999999
Q ss_pred cCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
...+.. .+...+.+..++..++.+.. ...+++|++||.++.+++++.|+|||+..+.++.|+..+|.+|++.++
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 876543 13344567777777877655 567899999999999999999999999999999999999999999988
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
.+.+...+. ++..++..|.||+++||.+++++|...+.++ +...++..|+.+++.+.
T Consensus 336 ~~~~l~~~~-d~~~la~~t~G~sgadl~~l~~eAa~~a~r~---~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 336 RRVPLAPDI-DAAIIARGTPGFSGADLANLVNEAALFAARG---NKRVVSMVEFEKAKDKI 392 (644)
T ss_pred hcCCCCCcC-CHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc---CCCcccHHHHHHHHHHH
Confidence 876654443 6788999999999999999999999887765 34467778888777654
No 40
>KOG0740|consensus
Probab=99.96 E-value=1.5e-29 Score=215.97 Aligned_cols=211 Identities=27% Similarity=0.444 Sum_probs=176.1
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
++..++||.||||+|||.|++++|.+.+..|+.++++.+.+++.|+.+..++.+|..|+..+|+|+||||+|.++..+.+
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~ 263 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD 263 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred c--hhHHHHHHHHH-HHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 91 S--DQERRLLSCLV-TQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 91 ~--~~~~~~~~~l~-~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
. +..++....++ ++.-......+.|+++++||.++++|.+++| ||...+.+|.|+.+.|..+|++++...++.++
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~ 341 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLS 341 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCcc
Confidence 4 33344444444 4433333345799999999999999999999 99999999999999999999999999999999
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC----------CCccccHHHHHHHhhhcCCc
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG----------TGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~ 223 (305)
..++..++..|+||+++||.++|.+|..--.++-.. ...+....|+..+++..+++
T Consensus 342 ~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 342 DLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 999999999999999999999999997644322111 12334555666666666554
No 41
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=5.3e-28 Score=224.51 Aligned_cols=287 Identities=17% Similarity=0.274 Sum_probs=196.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~ 70 (305)
++.+.+.-...++++|+||||||||++++.++..+ +..++.++.+.+. ..+.|+.+..++.+|+.+..
T Consensus 197 ~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~ 276 (758)
T PRK11034 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHh
Confidence 44455555667889999999999999999999764 4556666666655 34678899999999999988
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccC
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~ 145 (305)
..++||||||+|.++...............+...+. .+.+.+|++||..+ +.++++.+ || ..|.++.
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----~g~i~vIgATt~~E~~~~~~~D~AL~r--RF-q~I~v~e 348 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITE 348 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----CCCeEEEecCChHHHHHHhhccHHHHh--hC-cEEEeCC
Confidence 889999999999998765432222222233333333 67788999998754 57999998 99 4899999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCCC-----cHHhHHHHHHHHHHHHhhhhc-CCCccccHHHHHH
Q psy5649 146 PSRDQRAAILHCLLTK----VPHSLSTDQIQQVAFITHGF-----VGGDLATLLSNATSALLVETE-GTGQVLSYDGVMR 215 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g~-----~~~di~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (305)
|+..++..|++.+..+ ....+++..++.++..+..| .|.....++.++.....-.+. .....++.+|+.+
T Consensus 349 Ps~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~ 428 (758)
T PRK11034 349 PSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES 428 (758)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHH
Confidence 9999999999865443 34566777777666655544 566777777777543321111 1122356677777
Q ss_pred HhhhcCCchhhhhhc-------cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCC---CCc-ceeeecCCCch
Q psy5649 216 ALDHVKPSAMRQVLV-------EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIK---PPR-GILMFGPPGCS 284 (305)
Q Consensus 216 ~l~~~~~~~~~~~~~-------~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~-gill~GppG~G 284 (305)
.+.....-....+.. ......-..|.|++++++.+.+.+.+. +.|+. .|. .++|+||||||
T Consensus 429 v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 429 VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_pred HHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCC
Confidence 766654321111110 001111224678888888888776532 22332 233 49999999999
Q ss_pred HHHHHHHHhhhcCceeEEeeC
Q psy5649 285 KTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 285 KT~la~~lA~~~~~~~~~v~~ 305 (305)
||++|+++|..++.+|+.+++
T Consensus 501 KT~lAk~LA~~l~~~~i~id~ 521 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDM 521 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeec
Confidence 999999999999999998864
No 42
>KOG0651|consensus
Probab=99.96 E-value=1.5e-29 Score=203.54 Aligned_cols=214 Identities=23% Similarity=0.408 Sum_probs=175.2
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+++...+|++|.+++||||||+|||.+++++|..++.+++.+..+.+.+++.|+..+.|++.|..|+.+.||++|+||+|
T Consensus 156 ~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiD 235 (388)
T KOG0651|consen 156 ELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEID 235 (388)
T ss_pred hhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhh
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhccc--CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHEL--QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~--~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
+....+.+. ...+.....++..++++... .+.|-+|.+||.++.|+++|.|+||.+..+++|.|++..|..|++.+
T Consensus 236 AigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 236 AIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred hhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 987665332 23334445555555554432 47888999999999999999999999999999999999999988743
Q ss_pred HhcCCCCC-CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 159 LTKVPHSL-STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 159 l~~~~~~l-s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
... ... ..-+-+.+.+.++||.++|++..++++....+.+ ..+..-.++++.++.+..
T Consensus 316 ~~~--i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~---~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 316 VQP--IDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE---ERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred ccc--ccccccccHHHHHHHHhccChHHHhhhcccccccccch---hhHHHhHHHHHHHHHHHH
Confidence 322 221 1223566788899999999999999998776655 334455677777776653
No 43
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.94 E-value=7.3e-25 Score=208.30 Aligned_cols=184 Identities=22% Similarity=0.325 Sum_probs=136.8
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHH
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~ 69 (305)
+++.+.+.....++++|+||||||||++++.+|..+ +.+++.++.+.+. .++.|+.+..++.+|+.+.
T Consensus 189 ~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~ 268 (821)
T CHL00095 189 ERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ 268 (821)
T ss_pred HHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH
Confidence 456666777788899999999999999999999876 3688999988876 3578999999999999998
Q ss_pred hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEcc
Q psy5649 70 DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 70 ~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~ 144 (305)
...++||||||+|.++........ ......+...+. .+.+.+|++||..+ +.++++.+ || ..+.++
T Consensus 269 ~~~~~ILfiDEih~l~~~g~~~g~-~~~a~lLkp~l~-----rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ 339 (821)
T CHL00095 269 ENNNIILVIDEVHTLIGAGAAEGA-IDAANILKPALA-----RGELQCIGATTLDEYRKHIEKDPALER--RF-QPVYVG 339 (821)
T ss_pred hcCCeEEEEecHHHHhcCCCCCCc-ccHHHHhHHHHh-----CCCcEEEEeCCHHHHHHHHhcCHHHHh--cc-eEEecC
Confidence 888999999999999865432211 112222333333 56788899888753 56888888 88 468899
Q ss_pred CCCHHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCCCc-----HHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTK----VPHSLSTDQIQQVAFITHGFV-----GGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g~~-----~~di~~l~~~~~ 194 (305)
.|+..+...|++..... ....++++.+..++..+.+|. |...-.++..+.
T Consensus 340 ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~ 398 (821)
T CHL00095 340 EPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAG 398 (821)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHH
Confidence 99999999988754332 234578888888888888874 344444555443
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=6.7e-24 Score=200.89 Aligned_cols=171 Identities=19% Similarity=0.269 Sum_probs=129.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccc--cccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFS--KFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~--~~~~~~~~~l~~~~~~~~~ 70 (305)
.+.+.+.-...++++|+||||||||++++.+|..+ +..++.++.+.+.+ .+.|+.+..++.+|+.+..
T Consensus 198 ~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~ 277 (852)
T TIGR03345 198 QMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA 277 (852)
T ss_pred HHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 44455556777899999999999999999999876 25577777777653 5789999999999999975
Q ss_pred -CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEcc
Q psy5649 71 -HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 71 -~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~ 144 (305)
..++||||||++.+......... ......+...+. .+.+.+|++||.. -++++++.+ || ..|.++
T Consensus 278 ~~~~~ILfIDEih~l~~~g~~~~~-~d~~n~Lkp~l~-----~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~ 348 (852)
T TIGR03345 278 SPQPIILFIDEAHTLIGAGGQAGQ-GDAANLLKPALA-----RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVE 348 (852)
T ss_pred cCCCeEEEEeChHHhccCCCcccc-ccHHHHhhHHhh-----CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeC
Confidence 46899999999999865432211 111223333333 6778899999863 458999999 99 589999
Q ss_pred CCCHHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCCCc
Q psy5649 145 VPSRDQRAAILHCLLTK----VPHSLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g~~ 182 (305)
.|+..++..|++.+.+. ....++++.+..++..+.+|.
T Consensus 349 eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 349 EPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 99999999998755543 234667888888888888773
No 45
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.92 E-value=1.6e-23 Score=199.01 Aligned_cols=170 Identities=20% Similarity=0.312 Sum_probs=125.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~ 70 (305)
.+.+-+.-...++++|+||||||||++++.+|..+ +.+++.++.+.+. .++.|+.+..++.+|+.+..
T Consensus 189 ~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 189 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK 268 (857)
T ss_pred HHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 34555556677889999999999999999999987 6788888888776 34778999999999998654
Q ss_pred -CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEcc
Q psy5649 71 -HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 71 -~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~ 144 (305)
..++||||||+|.+......... ......+...+. .+.+.+|++|+..+ +.++++++ ||+ .|.++
T Consensus 269 ~~~~~ILfIDEih~l~~~~~~~~~-~d~~~~lkp~l~-----~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~ 339 (857)
T PRK10865 269 QEGNVILFIDELHTMVGAGKADGA-MDAGNMLKPALA-----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVA 339 (857)
T ss_pred cCCCeEEEEecHHHhccCCCCccc-hhHHHHhcchhh-----cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeC
Confidence 57899999999999865432211 112222333332 67788999999865 58999999 995 68899
Q ss_pred CCCHHHHHHHHHHHHhcC----CCCCCHHhHHHHHHHcCCC
Q psy5649 145 VPSRDQRAAILHCLLTKV----PHSLSTDQIQQVAFITHGF 181 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~----~~~ls~~~~~~la~~t~g~ 181 (305)
.|+..++..|++.+..++ ....+...+...+..+++|
T Consensus 340 eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 340 EPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred CCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 999999999998765543 2344555555555555554
No 46
>KOG0742|consensus
Probab=99.91 E-value=9.3e-24 Score=176.26 Aligned_cols=184 Identities=26% Similarity=0.383 Sum_probs=155.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCe-EEEEcccccccCCCCC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS-LLLLDNLDVLCTGRNR 90 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-vl~ide~d~l~~~~~~ 90 (305)
+=.+|++|||||||||.+++.||...+.++-.+.+.++.. ........|+.+|++++++... +|||||.|.++..++.
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 3458999999999999999999999999999888888753 3455788999999999998877 8889999999998887
Q ss_pred chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCC-----
Q psy5649 91 SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS----- 165 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~----- 165 (305)
...+....+.+-.++.+..+....++++.+||.+.++|.++.. |+++.++||.|..++|..|+..+++++...
T Consensus 462 tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~ 539 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSG 539 (630)
T ss_pred hhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCC
Confidence 7666666677777888888877889999999999999999988 999999999999999999999888875311
Q ss_pred ---------------------CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHh
Q psy5649 166 ---------------------LSTDQIQQVAFITHGFVGGDLATLLSNATSALL 198 (305)
Q Consensus 166 ---------------------ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~ 198 (305)
..+.-...+|..|+||++++|..|+...+..+.
T Consensus 540 ~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 540 KPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred CCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 112246778999999999999999887765443
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.91 E-value=1.1e-22 Score=193.95 Aligned_cols=172 Identities=20% Similarity=0.306 Sum_probs=128.4
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHH
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~ 69 (305)
.++.+.+.-...++++|+||||||||++++.++..+ +.+++.++.+.+. ..+.|+.+..++.+|+.+.
T Consensus 183 ~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 183 RRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT 262 (852)
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH
Confidence 345555666777899999999999999999999875 5678888877765 3577889999999999987
Q ss_pred hC-CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEc
Q psy5649 70 DH-APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 70 ~~-~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~ 143 (305)
.. .++||||||+|.++........ ......+...+. .+.+.+|++||.. -+.++++.+ ||. .+.+
T Consensus 263 ~~~~~~ILfIDEih~l~~~g~~~~~-~d~~~~Lk~~l~-----~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v 333 (852)
T TIGR03346 263 KSEGQIILFIDELHTLVGAGKAEGA-MDAGNMLKPALA-----RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFV 333 (852)
T ss_pred hcCCCeEEEeccHHHhhcCCCCcch-hHHHHHhchhhh-----cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEe
Confidence 64 6899999999999864332111 112222222222 5678899998875 357999999 994 6899
Q ss_pred cCCCHHHHHHHHHHHHhcC----CCCCCHHhHHHHHHHcCCCc
Q psy5649 144 PVPSRDQRAAILHCLLTKV----PHSLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~----~~~ls~~~~~~la~~t~g~~ 182 (305)
+.|+..++..|++.+..++ ...++...+..++..+.+|.
T Consensus 334 ~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 334 DEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred CCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999999999998765553 33456777888787777764
No 48
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=4.3e-22 Score=176.95 Aligned_cols=251 Identities=20% Similarity=0.282 Sum_probs=162.7
Q ss_pred HHHHHhhc-CCeEEEEeccccccc---ccchHHHHHHHHHHHHHh---CCCeEEEEcccccccCCCCCchhHHHHHHHHH
Q psy5649 30 IHSLASHM-KVHTVVIQVADMFSK---FYGEAEFRLKAAFDAALD---HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLV 102 (305)
Q Consensus 30 ~~~la~~l-~~~~~~v~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~ 102 (305)
++.++... +..++.+++.+-+.. ..+.....-..+++.... ..|+++++.|++.++.+ ....+.+..+.
T Consensus 32 ~~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~~----~~~~r~l~~l~ 107 (489)
T CHL00195 32 IRKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLND----ISISRKLRNLS 107 (489)
T ss_pred HHHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhcc----hHHHHHHHHHH
Confidence 34445444 456777777665422 111211222233333333 33789999999998832 12222333333
Q ss_pred HHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCc
Q psy5649 103 TQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 103 ~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~ 182 (305)
.. ... .+..+++.+ ....++..+.+ +-..+++|.|+..+..++++.+.......+++..++.++.++.|++
T Consensus 108 ~~---~~~-~~~~~i~~~--~~~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls 178 (489)
T CHL00195 108 RI---LKT-QPKTIIIIA--SELNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLS 178 (489)
T ss_pred HH---HHh-CCCEEEEEc--CCCCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 22 222 333333332 23556666664 4467899999999999999888777777899999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchh-hh-hhccCCCCCcccccchHHHHHHHHHHhhccCCC
Q psy5649 183 GGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAM-RQ-VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKH 260 (305)
Q Consensus 183 ~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~ 260 (305)
..+++.++..+... + . .+..+++...++..++... .. .....+...|++|||++.+|+.+.+... .+
T Consensus 179 ~~~~~~~~~~~~~~--~---~---~~~~~~~~~i~~~k~q~~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~---~~ 247 (489)
T CHL00195 179 LERIRRVLSKIIAT--Y---K---TIDENSIPLILEEKKQIISQTEILEFYSVNEKISDIGGLDNLKDWLKKRST---SF 247 (489)
T ss_pred HHHHHHHHHHHHHH--c---C---CCChhhHHHHHHHHHHHHhhhccccccCCCCCHHHhcCHHHHHHHHHHHHH---Hh
Confidence 99999999875321 1 1 1122222222221111111 11 1122356789999999999999987543 23
Q ss_pred HHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 261 PEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 261 ~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.....++|+.+|+|+|||||||||||++|+++|++++++|+.++
T Consensus 248 ~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 248 SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 45567889999999999999999999999999999999999986
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.91 E-value=3.5e-23 Score=155.01 Aligned_cols=129 Identities=33% Similarity=0.532 Sum_probs=115.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCC-CeEEEEcccccccCCC--CCch
Q psy5649 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA-PSLLLLDNLDVLCTGR--NRSD 92 (305)
Q Consensus 16 vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vl~ide~d~l~~~~--~~~~ 92 (305)
++|+||||||||++++.+|+.++.+++.+++..+.+.+.++.+..+..+|+.+.... |+|++|||+|.++.+. ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998889999999999999999988 9999999999999776 2335
Q ss_pred hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 93 QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
........+...++.....+.++++|+++|..+.+++.+.+ +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 55677788888888877766789999999999999999997 89999998863
No 50
>KOG0743|consensus
Probab=99.88 E-value=1.6e-21 Score=165.83 Aligned_cols=181 Identities=22% Similarity=0.288 Sum_probs=142.5
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
+..|+..|.++.+++|||||||||||+++.|+|+.++.+++.++.+....+ .+ ++.++..+ ...+||+|+++
T Consensus 224 k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n----~d--Lr~LL~~t--~~kSIivIEDI 295 (457)
T KOG0743|consen 224 KDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD----SD--LRHLLLAT--PNKSILLIEDI 295 (457)
T ss_pred chHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc----HH--HHHHHHhC--CCCcEEEEeec
Confidence 467899999999999999999999999999999999999999988776432 12 55555443 45579999999
Q ss_pred ccccCCCCCch---------hHHHHHHHHHHHHhhhcccC-CeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHH
Q psy5649 82 DVLCTGRNRSD---------QERRLLSCLVTQVDRLHELQ-ACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQR 151 (305)
Q Consensus 82 d~l~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~-~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r 151 (305)
|+-+..++... ...-.++.|+.+++.++..+ +.-++|.|||..+.|||+|.|+||++.+|++...+..+-
T Consensus 296 Dcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~f 375 (457)
T KOG0743|consen 296 DCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAF 375 (457)
T ss_pred ccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHH
Confidence 98775433221 12356788999999999876 456678899999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 152 AAILHCLLTKV-PHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 152 ~~i~~~~l~~~-~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
..+..+++.-. ++.+-+ ++.++. ...-.||+|+...+..
T Consensus 376 K~La~nYL~~~~~h~L~~-eie~l~-~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 376 KTLASNYLGIEEDHRLFD-EIERLI-EETEVTPAQVAEELMK 415 (457)
T ss_pred HHHHHHhcCCCCCcchhH-HHHHHh-hcCccCHHHHHHHHhh
Confidence 99999988764 355554 566633 3445688888665443
No 51
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3e-20 Score=169.87 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=128.2
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccc--cccchHHHHHHHHHHHHH
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFS--KFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~--~~~~~~~~~l~~~~~~~~ 69 (305)
..+.+-+.....++-+|+|+||+|||.++.-+|..+ +...+.++.+.+.. ++.|+.|.+++.+++...
T Consensus 180 ~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~ 259 (786)
T COG0542 180 RRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVE 259 (786)
T ss_pred HHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHh
Confidence 345566777888899999999999999999999765 55678888877764 588999999999999999
Q ss_pred hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEcc
Q psy5649 70 DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 70 ~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~ 144 (305)
...+.||||||++.+..............+.+...+- .+.+-+|++|+..+ +=|.+|.| || ..+.+.
T Consensus 260 ~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-----RGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~ 331 (786)
T COG0542 260 KSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-----RGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVD 331 (786)
T ss_pred cCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-----cCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCC
Confidence 9999999999999998765432211222223333333 56677888887632 34789988 88 789999
Q ss_pred CCCHHHHHHHHHHHHhcC----CCCCCHHhHHHHHHHcCCC
Q psy5649 145 VPSRDQRAAILHCLLTKV----PHSLSTDQIQQVAFITHGF 181 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~----~~~ls~~~~~~la~~t~g~ 181 (305)
.|+.++-..|++.+-.++ ...++++.+...+..+..|
T Consensus 332 EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RY 372 (786)
T COG0542 332 EPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRY 372 (786)
T ss_pred CCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhh
Confidence 999999999998654443 3456666666666555444
No 52
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.7e-21 Score=160.64 Aligned_cols=74 Identities=51% Similarity=0.964 Sum_probs=71.5
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
.+.|.++++||||++++++.++|++..|+++|++|..+|+.||+|+|||||||||||+||||+|++.+.+||+|
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999997
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=1.5e-19 Score=151.43 Aligned_cols=189 Identities=15% Similarity=0.212 Sum_probs=138.3
Q ss_pred hhHHhcCCCC---cceEEEEcCCCCcHHHHHHHHHhhcC-------CeEEEEecccccccccchHHHHHHHHHHHHHhCC
Q psy5649 3 YALQSNGMKK---CNGILIYGVNGTGKTSLIHSLASHMK-------VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72 (305)
Q Consensus 3 ~~~~~~~~~~---~~~vll~Gp~G~GKTtl~~~la~~l~-------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 72 (305)
+..+..++.+ +.+++|+|||||||||+|+++|..+. .++++++.+++.+.+.|.+......+|+.+.
T Consensus 46 ~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~--- 122 (287)
T CHL00181 46 RLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM--- 122 (287)
T ss_pred HHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---
Confidence 3445566644 44699999999999999999998652 3588999888888888877777777887763
Q ss_pred CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEccCCC
Q psy5649 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELPVPS 147 (305)
Q Consensus 73 ~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~~p~ 147 (305)
++||||||++.+...+...+........++..++.. ...+++|++++.. ...++++++ ||...++|+.++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t 197 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYT 197 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcC
Confidence 479999999998754433334455666777777642 3446666665432 134578888 999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHH------cCCCc-HHhHHHHHHHHHHHHhh
Q psy5649 148 RDQRAAILHCLLTKVPHSLSTDQIQQVAFI------THGFV-GGDLATLLSNATSALLV 199 (305)
Q Consensus 148 ~~~r~~i~~~~l~~~~~~ls~~~~~~la~~------t~g~~-~~di~~l~~~~~~~~~~ 199 (305)
..++.+|+..++++....++.+....+... .+.|. ++++++++.++......
T Consensus 198 ~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~ 256 (287)
T CHL00181 198 PEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQAN 256 (287)
T ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999888777877655544432 24454 78899988888765543
No 54
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=4.6e-19 Score=148.73 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=138.3
Q ss_pred hhHHhcCCCC---cceEEEEcCCCCcHHHHHHHHHhhcC-------CeEEEEecccccccccchHHHHHHHHHHHHHhCC
Q psy5649 3 YALQSNGMKK---CNGILIYGVNGTGKTSLIHSLASHMK-------VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72 (305)
Q Consensus 3 ~~~~~~~~~~---~~~vll~Gp~G~GKTtl~~~la~~l~-------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 72 (305)
..+..+++.. +.+++|+||||||||++|++++..+. .+++.++++++.+.+.|.....+..+|+.+.
T Consensus 45 ~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~--- 121 (284)
T TIGR02880 45 RLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM--- 121 (284)
T ss_pred HHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---
Confidence 4556667664 45899999999999999999988662 2688999988888777887777888888763
Q ss_pred CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC--C---CCCccccCCCCcceEEEccCCC
Q psy5649 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL--D---NVDVSLRTPGRLDQEIELPVPS 147 (305)
Q Consensus 73 ~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~--~---~l~~~l~~~~r~~~~i~~~~p~ 147 (305)
+++|||||++.+...+...+........++..++.. ...+++|++++.. + .+++++++ ||...+++|.++
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~ 196 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYS 196 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcC
Confidence 479999999988654433334445566677776632 3456666665432 2 24788888 999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHc------CC-CcHHhHHHHHHHHHHHHh
Q psy5649 148 RDQRAAILHCLLTKVPHSLSTDQIQQVAFIT------HG-FVGGDLATLLSNATSALL 198 (305)
Q Consensus 148 ~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t------~g-~~~~di~~l~~~~~~~~~ 198 (305)
..++..|++.++++....++.+..+.+.... +. =+++++++++..+.....
T Consensus 197 ~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~ 254 (284)
T TIGR02880 197 EAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQA 254 (284)
T ss_pred HHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999998877778877666665431 22 247888888877765444
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=3.2e-18 Score=142.67 Aligned_cols=155 Identities=20% Similarity=0.304 Sum_probs=117.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc-------CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM-------KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l-------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
..+++|+|||||||||+|+++|+.+ ..++++++++++.+.+.++....+..+|+.+. ++||||||+|.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~ 118 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLA 118 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhc
Confidence 4578999999999999999999864 23678889999999999999999999998774 5799999999986
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
...+. +.....+..++..++.. ...+++++++... ..+++++++ ||...+.++.++..++.+|++.++.
T Consensus 119 ~~~~~-~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 119 RGGEK-DFGKEAIDTLVKGMEDN---RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcc-chHHHHHHHHHHHHhcc---CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHH
Confidence 43221 22334555566665542 3445555544332 235778887 8988999999999999999999988
Q ss_pred cCCCCCCHHhHHHHHH
Q psy5649 161 KVPHSLSTDQIQQVAF 176 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~ 176 (305)
.....++.+.+..++.
T Consensus 193 ~~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 193 EREYKLTEEAKWKLRE 208 (261)
T ss_pred HcCCccCHHHHHHHHH
Confidence 8777888876666643
No 56
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.80 E-value=1.6e-21 Score=147.02 Aligned_cols=180 Identities=19% Similarity=0.207 Sum_probs=139.7
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++++++++-+.|+||+|+||||++|.|..+..+..+.+ .+.+.|..--
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i--------------------------------~~~~~dl~~l 69 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI--------------------------------LVNGHDLSRL 69 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE--------------------------------EECCeecccc
Confidence 37789999999999999999999999999998887666 3333333221
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
...+.+.-++.+...++... ++..-+.++++..+++-.|.-..++.-..+...+++++.. ..+..|.++
T Consensus 70 ~~~~iP~LRR~IGvVFQD~r----------LL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~L 138 (223)
T COG2884 70 KGREIPFLRRQIGVVFQDFR----------LLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH-KARALPSQL 138 (223)
T ss_pred cccccchhhheeeeEeeecc----------ccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch-hhhcCcccc
Confidence 22222222333333332222 2334477888888888877777778888888888888765 677889999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
|+|+.|+++++ ++++.++..+++|||+.++|+....++++.+++++..+.++++.+|+....+
T Consensus 139 SGGEQQRvaIA---------RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 139 SGGEQQRVAIA---------RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred CchHHHHHHHH---------HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999754433
No 57
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=2.2e-21 Score=177.34 Aligned_cols=130 Identities=24% Similarity=0.232 Sum_probs=95.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 236 (305)
++++.+..+|+|+.|+++.+ ++++.++..+++|||++++|+.+.+.+.+.+.++.. .+.+.++++|+...
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLA---------RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhcCcccCCHHHHHHHHHH---------HHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 45667889999999999999 999999999999999999999999999999988854 35677888886543
Q ss_pred cccc---------------cchHHHHHHHHHH---hh--------c--------cCCC-------HHHHHhcCCCCCcc-
Q psy5649 237 WSDI---------------GGQDEVKLKLRQS---VE--------W--------PLKH-------PEAFARLGIKPPRG- 274 (305)
Q Consensus 237 ~~~i---------------~g~~~~~~~l~~~---~~--------~--------~~~~-------~~~~~~~~~~~~~g- 274 (305)
+.++ |..+++....... .. . ...| ..+++++.+..+.|
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge 311 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE 311 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHHHHHhhchhhccccccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCC
Confidence 3222 2333333322110 00 0 0112 12456666666667
Q ss_pred -eeeecCCCchHHHHHHHHhhhc
Q psy5649 275 -ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 275 -ill~GppG~GKT~la~~lA~~~ 296 (305)
+.|.||||||||||+++|++..
T Consensus 312 ~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999875
No 58
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.80 E-value=1.5e-20 Score=165.54 Aligned_cols=242 Identities=17% Similarity=0.199 Sum_probs=144.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE----EEE--ecccccccccchHHHHHHHHHHHHHhCCCeEEEEcc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT----VVI--QVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDN 80 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~----~~v--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide 80 (305)
+|.+.+|+.+.|+|.+||||||+++++-+.+.... ++| +..++. +..+... +..+...=++++=|-
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~----~l~~~~~----r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL----GLSEREM----RKLRGKRIAMIFQDP 100 (539)
T ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchh----cCCHHHH----HHhccccEEEEecCc
Confidence 57789999999999999999999999999887663 333 222121 1111111 222333334555444
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 81 LDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 81 ~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
+..+.+.. ..-.++...+.. .... ...+.-..++ ..-.. +..|+...+ +
T Consensus 101 ~~slnP~~-------tIg~Qi~E~~~~-h~~~---------~~~ea~~~a~----elL~~--Vgl~~~~~~--------~ 149 (539)
T COG1123 101 MTSLNPVM-------TIGDQIREALRL-HGKG---------SRAEARKRAV----ELLEQ--VGLPDPERR--------D 149 (539)
T ss_pred hhhcCchh-------hHHHHHHHHHHH-hccc---------cHHHHHHHHH----HHHHH--cCCCChhhh--------c
Confidence 55443321 111122111110 0000 0000000000 00011 222232222 5
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCCCccc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 239 (305)
++|+++|+|+.|++..+ .+++.+|..+++|||+..+|..+..++.++++.++. .+.+.++++|+..-..+
T Consensus 150 ~yPheLSGG~rQRv~iA---------mALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 150 RYPHQLSGGMRQRVMIA---------MALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred cCCcccCchHHHHHHHH---------HHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH
Confidence 68999999999999999 999999999999999999999999999999999874 47777888887643333
Q ss_pred c---------------cchHHHHHH--------HHHHhh--------c----------------------cC--------
Q psy5649 240 I---------------GGQDEVKLK--------LRQSVE--------W----------------------PL-------- 258 (305)
Q Consensus 240 i---------------~g~~~~~~~--------l~~~~~--------~----------------------~~-------- 258 (305)
+ |..+++... +..... + ..
T Consensus 221 ~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~ 300 (539)
T COG1123 221 LADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRE 300 (539)
T ss_pred hcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeecccccccccc
Confidence 2 223332211 111000 0 00
Q ss_pred -CCHHHHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 259 -KHPEAFARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 259 -~~~~~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
....++++++|+...| +.|+|++||||||+||+|++-.
T Consensus 301 ~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 301 RGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred ccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 0123356666777777 8899999999999999999743
No 59
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=2.3e-21 Score=149.52 Aligned_cols=177 Identities=20% Similarity=0.172 Sum_probs=120.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+|+.+.++||+|||||||+|++.+...++.+.+ ++|+.+....
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I--------------------------------~i~g~~~~~~ 69 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI--------------------------------TVDGEDVGDK 69 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE--------------------------------EECCEeccch
Confidence 46778999999999999999999999998777776665 4444332211
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccC-CCCcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRT-PGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~-~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
. .....++.+...++..+ ++.-.+..+++-.+... .++...+.+-......+++++.+ ..+.+|.+
T Consensus 70 ~--~~~~~R~~vGmVFQ~fn----------LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~q 136 (240)
T COG1126 70 K--DILKLRRKVGMVFQQFN----------LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQ 136 (240)
T ss_pred h--hHHHHHHhcCeeccccc----------ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccc
Confidence 1 10111122222222221 12222344444333322 12222222223334455556554 56789999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
||+|+.||+|++ ++|+.++...++|||++.+|+....++.+.+..+...+++.++++|.+...
T Consensus 137 LSGGQqQRVAIA---------RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 137 LSGGQQQRVAIA---------RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred cCcHHHHHHHHH---------HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 999999999999 999999999999999999999999999999999999999999999976543
No 60
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.78 E-value=2.1e-21 Score=176.52 Aligned_cols=129 Identities=15% Similarity=0.129 Sum_probs=90.3
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++...+.+.++++|+...+..
T Consensus 136 ~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 136 DKLVGELSIGEQQMVEIA---------KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred cCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 445678999999999999 99999999999999999999999999999998886556677788886543322
Q ss_pred c---------------cchHHH-HHHHHHHhh------c-cC---CC-H----------HHHHhcCCCCCcc--eeeecC
Q psy5649 240 I---------------GGQDEV-KLKLRQSVE------W-PL---KH-P----------EAFARLGIKPPRG--ILMFGP 280 (305)
Q Consensus 240 i---------------~g~~~~-~~~l~~~~~------~-~~---~~-~----------~~~~~~~~~~~~g--ill~Gp 280 (305)
+ +..+++ ...+.+... . |. .. . ..++++++....| +.|.||
T Consensus 207 ~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~ 286 (501)
T PRK10762 207 ICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGL 286 (501)
T ss_pred hCCEEEEEeCCEEEEecCcCcCCHHHHHHHhcCCCccccccccccCCCCcEEEEeCcccCCcccceEEEcCCcEEEEecC
Confidence 2 111111 011111110 0 00 00 0 1245666666666 889999
Q ss_pred CCchHHHHHHHHhhhcC
Q psy5649 281 PGCSKTMIAKALATESK 297 (305)
Q Consensus 281 pG~GKT~la~~lA~~~~ 297 (305)
||||||||.++|++...
T Consensus 287 NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 287 MGAGRTELMKVLYGALP 303 (501)
T ss_pred CCCCHHHHHHHHhCCCC
Confidence 99999999999998753
No 61
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.9e-21 Score=176.11 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++...++|+|++|+++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+...+.+
T Consensus 140 ~~~~~~LSgG~~qrv~ia---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 140 DEKVANLSISHKQMLEIA---------KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred ccchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 445678999999999999 99999999999999999999999999999999886556677788886432222
Q ss_pred c---------------cchHHHH-HH-HHHHhh----------cc-----------------CCCHHHHHhcCCCCCcc-
Q psy5649 240 I---------------GGQDEVK-LK-LRQSVE----------WP-----------------LKHPEAFARLGIKPPRG- 274 (305)
Q Consensus 240 i---------------~g~~~~~-~~-l~~~~~----------~~-----------------~~~~~~~~~~~~~~~~g- 274 (305)
+ |..+++. .. +..... ++ ..+..+++++++..+.|
T Consensus 211 ~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~isl~i~~Ge 290 (510)
T PRK09700 211 ICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFSVCRGE 290 (510)
T ss_pred hCCEEEEEECCEEeeecchhhCCHHHHHHHhcCCCccccccccccccccCCCCcEEEEeCccccCCCcccceeEEEcCCc
Confidence 1 1122110 00 110000 00 01223466677777777
Q ss_pred -eeeecCCCchHHHHHHHHhhhcC
Q psy5649 275 -ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 275 -ill~GppG~GKT~la~~lA~~~~ 297 (305)
+.|.||||||||||+++|++...
T Consensus 291 ~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 291 ILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999998653
No 62
>KOG0744|consensus
Probab=99.78 E-value=2.4e-18 Score=140.05 Aligned_cols=148 Identities=27% Similarity=0.409 Sum_probs=123.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC---------CeEEEEecccccccccchHHHHHHHHHHHHHhC---CC--eEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK---------VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDH---AP--SLL 76 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~---------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~--~vl 76 (305)
...+-+||+||||||||+||++||+.+. ...+++++..+.+++.++..+.+..+|+..... .. .++
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4456799999999999999999999874 357899999999999999999999999877642 22 367
Q ss_pred EEcccccccCCCCC------chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHH
Q psy5649 77 LLDNLDVLCTGRNR------SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 77 ~ide~d~l~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
+|||++.+...+.. .....+.+..++.+++++.. .+++++++|.|-.+.+|.++-. |-+-...+.+|+...
T Consensus 255 LIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~-~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR-YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEA 331 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHH
Confidence 89999999865522 23345888999999999887 6778888999999999999987 888889999999999
Q ss_pred HHHHHHHHHhc
Q psy5649 151 RAAILHCLLTK 161 (305)
Q Consensus 151 r~~i~~~~l~~ 161 (305)
++.|++..+..
T Consensus 332 i~~IlkscieE 342 (423)
T KOG0744|consen 332 IYEILKSCIEE 342 (423)
T ss_pred HHHHHHHHHHH
Confidence 99999866553
No 63
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=2.8e-20 Score=168.96 Aligned_cols=130 Identities=21% Similarity=0.244 Sum_probs=92.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
.+++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...+
T Consensus 128 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~ 198 (490)
T PRK10938 128 LLDRRFKYLSTGETRKTLLC---------QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEI 198 (490)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 45677889999999999999 999999999999999999999999999999998865566777888875433
Q ss_pred ccc---------------cchHHHHH--HHHHHhh---c-----c------------------------CCC--HHHHHh
Q psy5649 238 SDI---------------GGQDEVKL--KLRQSVE---W-----P------------------------LKH--PEAFAR 266 (305)
Q Consensus 238 ~~i---------------~g~~~~~~--~l~~~~~---~-----~------------------------~~~--~~~~~~ 266 (305)
.++ +..+++.. .+..... + | ..| ..++++
T Consensus 199 ~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~ 278 (490)
T PRK10938 199 PDFVQFAGVLADCTLAETGEREEILQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILHN 278 (490)
T ss_pred HhhCCEEEEEECCEEEEeCCHHHHhcchhhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEECCeeEEee
Confidence 222 12222210 1111100 0 0 001 113455
Q ss_pred cCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 267 LGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 267 ~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+++..+.| +.|.||||||||||+++|++..
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~ 310 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH 310 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 55665666 8999999999999999999853
No 64
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.77 E-value=3.5e-21 Score=176.21 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=93.4
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCCc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVKW 237 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~ 237 (305)
+++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++... +.+.++++|+...+
T Consensus 150 ~~~~~~~LSgGe~qrv~iA---------raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 220 (529)
T PRK15134 150 LTDYPHQLSGGERQRVMIA---------MALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV 220 (529)
T ss_pred HhhCCcccCHHHHHHHHHH---------HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH
Confidence 4667889999999999999 9999999999999999999999999999999987544 56778888875432
Q ss_pred ccc---------------cchHHHH--------HHHHHH----------------hh---ccCCC-------------HH
Q psy5649 238 SDI---------------GGQDEVK--------LKLRQS----------------VE---WPLKH-------------PE 262 (305)
Q Consensus 238 ~~i---------------~g~~~~~--------~~l~~~----------------~~---~~~~~-------------~~ 262 (305)
..+ +..+++. +.+.+. +. ....| ..
T Consensus 221 ~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 300 (529)
T PRK15134 221 RKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNV 300 (529)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccccccce
Confidence 221 2233221 111100 00 00112 12
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+++++++....| +.|.||||||||||+++|++..
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 466667777777 8999999999999999999854
No 65
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.77 E-value=3.1e-19 Score=159.90 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=59.6
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 240 (305)
+...++|+|+..+++.+ ++|+.+|..+++|||++++|..+.+++.+.+..+.. +.++++|+...++.+
T Consensus 149 ~~~~~LSGG~r~Rv~LA---------~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g---tviiVSHDR~FLd~V 216 (530)
T COG0488 149 RPVSSLSGGWRRRVALA---------RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG---TVIVVSHDRYFLDNV 216 (530)
T ss_pred CchhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC---cEEEEeCCHHHHHHH
Confidence 34467999999999999 999999999999999999999999999999997764 678899987766655
No 66
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=2.5e-19 Score=152.03 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=143.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccch-HHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGE-AEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
.+|..+.|.||||.||||.++.||+++.++++..+...-+..-... ....++.-|+......-.+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~-------------- 163 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRA-------------- 163 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcce--------------
Confidence 4566789999999999999999999999998876542111111011 1223445555543321110
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHH
Q psy5649 90 RSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169 (305)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~ 169 (305)
-...+++..+-..+.. +. .++-...-..|+++ +..+++++ +..+++...++|+|
T Consensus 164 --v~K~QYVd~iPk~~KG--------------~v-~elLk~~de~g~~d--------evve~l~L-~nvl~r~v~~LSGG 217 (591)
T COG1245 164 --VHKPQYVDLIPKVVKG--------------KV-GELLKKVDERGKFD--------EVVERLGL-ENVLDRDVSELSGG 217 (591)
T ss_pred --ecchHHHHHHHHHhcc--------------hH-HHHHHhhhhcCcHH--------HHHHHhcc-hhhhhhhhhhcCch
Confidence 0111122222211110 00 00001111123443 33455664 34777778899999
Q ss_pred hHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc---------
Q psy5649 170 QIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI--------- 240 (305)
Q Consensus 170 ~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i--------- 240 (305)
++|++|.+ ..+.++|..+.+|||++.+|....-...++++.+......+++++|+..-++-+
T Consensus 218 ELQr~aIa---------a~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 218 ELQRVAIA---------AALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHHHHHHH---------HHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 99999999 999999999999999999998888778888888877677788899976543322
Q ss_pred --------cchHHHHHHHHHHhhccC-----------------------------CCHHH---HHhcCCCCCcc------
Q psy5649 241 --------GGQDEVKLKLRQSVEWPL-----------------------------KHPEA---FARLGIKPPRG------ 274 (305)
Q Consensus 241 --------~g~~~~~~~l~~~~~~~~-----------------------------~~~~~---~~~~~~~~~~g------ 274 (305)
.-+..++..+.+.+...+ .|++. +..+.+....|
T Consensus 289 ~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~~g~F~L~V~~G~i~~gE 368 (591)
T COG1245 289 EPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDGE 368 (591)
T ss_pred CCccceEeccchHHHHHHHHHHhccCchhcccccccceeeeccCcccccccceeeecchheeecCceEEEecCCeeecce
Confidence 112233333333332111 11111 22222222222
Q ss_pred -eeeecCCCchHHHHHHHHhhhcC
Q psy5649 275 -ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 275 -ill~GppG~GKT~la~~lA~~~~ 297 (305)
+.+.||||.||||+++.||+..+
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ik 392 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIK 392 (591)
T ss_pred EEEEECCCCcchHHHHHHHhcccc
Confidence 88999999999999999998765
No 67
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.8e-21 Score=175.10 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=90.1
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++....+|+|++|+++.+ ++++.++..+++|||++++|+.....+.+.+.++...+.+.++++|+...+..
T Consensus 138 ~~~~~~LSgGqkqrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~ 208 (506)
T PRK13549 138 ATPVGNLGLGQQQLVEIA---------KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKA 208 (506)
T ss_pred ccchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 445568999999999999 99999999999999999999999999999998886555667778886432222
Q ss_pred c---------------cchHHH-H-HHHHHHhh-----------------------ccCCC-----HHHHHhcCCCCCcc
Q psy5649 240 I---------------GGQDEV-K-LKLRQSVE-----------------------WPLKH-----PEAFARLGIKPPRG 274 (305)
Q Consensus 240 i---------------~g~~~~-~-~~l~~~~~-----------------------~~~~~-----~~~~~~~~~~~~~g 274 (305)
+ +..+++ . ..+..... ....| ..+++++++..+.|
T Consensus 209 ~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~G 288 (506)
T PRK13549 209 ISDTICVIRDGRHIGTRPAAGMTEDDIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRG 288 (506)
T ss_pred hcCEEEEEECCEEeeecccccCCHHHHHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeEEcCC
Confidence 1 111111 0 00000000 00112 12566667777777
Q ss_pred --eeeecCCCchHHHHHHHHhhhc
Q psy5649 275 --ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 275 --ill~GppG~GKT~la~~lA~~~ 296 (305)
+.|.||||+|||||+++|++..
T Consensus 289 e~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 289 EILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred cEEEEeCCCCCCHHHHHHHHhCCC
Confidence 8899999999999999999864
No 68
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.4e-21 Score=172.64 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=90.2
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++.+.++|+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|+...+..
T Consensus 135 ~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 135 DTPLKYLSIGQRQMVEIA---------KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred CCchhhCCHHHHHHHHHH---------HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 345668999999999999 99999999999999999999999999999999886556677788886432221
Q ss_pred c-------------cchHHH----HHHHHHHh-h---------ccC------------CCHHHHHhcCCCCCcc--eeee
Q psy5649 240 I-------------GGQDEV----KLKLRQSV-E---------WPL------------KHPEAFARLGIKPPRG--ILMF 278 (305)
Q Consensus 240 i-------------~g~~~~----~~~l~~~~-~---------~~~------------~~~~~~~~~~~~~~~g--ill~ 278 (305)
+ +..+.. ...+.+.. . .+. ....+++++++....| +.|.
T Consensus 206 ~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~ii 285 (501)
T PRK11288 206 LCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIYGYRPRPLGEVRLRLDGLKGPGLREPISFSVRAGEIVGLF 285 (501)
T ss_pred hCCEEEEEECCEEEeecCccccCCHHHHHHHhcCCCccccccccccCCCCcEEEEeccccCCcccceeEEEeCCcEEEEE
Confidence 1 000000 00111100 0 000 0112456666666666 8999
Q ss_pred cCCCchHHHHHHHHhhhcC
Q psy5649 279 GPPGCSKTMIAKALATESK 297 (305)
Q Consensus 279 GppG~GKT~la~~lA~~~~ 297 (305)
||||||||||.++|++...
T Consensus 286 G~NGsGKSTLlk~l~G~~~ 304 (501)
T PRK11288 286 GLVGAGRSELMKLLYGATR 304 (501)
T ss_pred cCCCCCHHHHHHHHcCCCc
Confidence 9999999999999998753
No 69
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-20 Score=171.17 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=90.3
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++...++|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|+...+..
T Consensus 129 ~~~~~~LSgGq~qrv~lA---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 129 RAKVATLSVSQMQMIEIA---------KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred cCchhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 445668999999999999 99999999999999999999999999999998886556677778886432222
Q ss_pred c---------------cchHHH-HHH-HHHHhh------cc-----------------CCCHHHHHhcCCCCCcc--eee
Q psy5649 240 I---------------GGQDEV-KLK-LRQSVE------WP-----------------LKHPEAFARLGIKPPRG--ILM 277 (305)
Q Consensus 240 i---------------~g~~~~-~~~-l~~~~~------~~-----------------~~~~~~~~~~~~~~~~g--ill 277 (305)
+ +..++. ... ...... .+ ..+..+++++++..+.| +.|
T Consensus 200 ~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l 279 (491)
T PRK10982 200 LCDEITILRDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGI 279 (491)
T ss_pred hCCEEEEEECCEEEeecChhhCCHHHHHHHHhCCCcccccccccCCCCCcEEEEeCcccccCcccceeeEEEeCCcEEEE
Confidence 1 111111 000 110000 00 01112466667777777 899
Q ss_pred ecCCCchHHHHHHHHhhhc
Q psy5649 278 FGPPGCSKTMIAKALATES 296 (305)
Q Consensus 278 ~GppG~GKT~la~~lA~~~ 296 (305)
.||||||||||+++|++..
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred ecCCCCCHHHHHHHHcCCC
Confidence 9999999999999999865
No 70
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.6e-21 Score=178.00 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
.+++.+.++|+|+.|+++.+ ++++.++..+++|||++.+|......+.+.++++... +.+.++++|+.
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA---------~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIA---------MALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred HHhCCCccCCHHHHHHHHHH---------HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 35677889999999999999 9999999999999999999999999999999888644 56677788764
No 71
>KOG0727|consensus
Probab=99.75 E-value=2.4e-18 Score=135.65 Aligned_cols=74 Identities=49% Similarity=0.942 Sum_probs=70.8
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.|.+.+.||||++-.|+.+++.+..|+.+.++|++.|++||+|+|+|||||||||+||+++|+....+||+|.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv 221 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV 221 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeec
Confidence 44778999999999999999999999999999999999999999999999999999999999999999999984
No 72
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=1.4e-20 Score=171.32 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=90.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
.++....+|+|+.++++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...+.
T Consensus 134 ~~~~~~~LSgG~~qrv~la---------~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~ 204 (510)
T PRK15439 134 LDSSAGSLEVADRQIVEIL---------RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR 204 (510)
T ss_pred ccCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4555678999999999999 9999999999999999999999999999999888655667777888643222
Q ss_pred cc---------------cchHHHHH-HHHHHhh-----------------ccC-C-----C----------HHHHHhcCC
Q psy5649 239 DI---------------GGQDEVKL-KLRQSVE-----------------WPL-K-----H----------PEAFARLGI 269 (305)
Q Consensus 239 ~i---------------~g~~~~~~-~l~~~~~-----------------~~~-~-----~----------~~~~~~~~~ 269 (305)
++ |..+++.. ...+... .|. . . ...++++.+
T Consensus 205 ~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~isl 284 (510)
T PRK15439 205 QLADRISVMRDGTIALSGKTADLSTDDIIQAITPAAREKSLSASQKLWLELPGNRRQQAAGAPVLTVEDLTGEGFRNISL 284 (510)
T ss_pred HhCCEEEEEECCEEEEecChHHcCHHHHHHHHhCccccccccccccccccccccccccCCCCceEEEeCCCCCCccceeE
Confidence 21 22222211 1111000 000 0 0 012445555
Q ss_pred CCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 270 KPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 270 ~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
..+.| +.|.||||||||||+++|++..
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 55666 8999999999999999999864
No 73
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.2e-20 Score=155.90 Aligned_cols=171 Identities=20% Similarity=0.237 Sum_probs=127.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+..|+.+.|.|||||||||++|.||+...+..++| +||+-+.-.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I--------------------------------~i~g~~vt~- 69 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI--------------------------------LIDGRDVTD- 69 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE--------------------------------EECCEECCC-
Confidence 46778999999999999999999999999998888777 555544311
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
.+...+.+...++. ..+....++.+++.+.++..+....+++-++-+..+.++| .+++++.+.++
T Consensus 70 ----l~P~~R~iamVFQ~----------yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-~~lL~r~P~~L 134 (338)
T COG3839 70 ----LPPEKRGIAMVFQN----------YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-EHLLNRKPLQL 134 (338)
T ss_pred ----CChhHCCEEEEeCC----------ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-hhHHhcCcccC
Confidence 11222222222211 1123344778888888888665555565555556666665 45899999999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
|+|+.|++|.+ ++++++|..+++|||.+++|......+...+.++... +.+.+.++|+.
T Consensus 135 SGGQrQRVAla---------RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 135 SGGQRQRVALA---------RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred ChhhHHHHHHH---------HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 99999999999 9999999999999999999998888888888887654 56777888864
No 74
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.3e-19 Score=135.66 Aligned_cols=180 Identities=21% Similarity=0.193 Sum_probs=124.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC-eEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKV-HTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
++.++++....|.||+||||||++|++...... +-..+.+ -+.+|+.+..-
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G----------------------------~v~~~g~ni~~ 78 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEG----------------------------EVLLDGKNIYD 78 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEE----------------------------EEEECCeeccC
Confidence 467788889999999999999999999875432 1222221 23566666554
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH---HHHhcC
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH---CLLTKV 162 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~---~~l~~~ 162 (305)
++.+. ..-++.+ ..+.+-++ +. . .+..+++...++..|.-+.+++--+.....+..+|. +.+++.
T Consensus 79 ~~~d~-~~lRr~v----GMVFQkPn---PF---p-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s 146 (253)
T COG1117 79 PKVDV-VELRRRV----GMVFQKPN---PF---P-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKS 146 (253)
T ss_pred CCCCH-HHHHHHh----eeeccCCC---CC---C-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCC
Confidence 32221 1112222 33332111 11 1 255677777776655443333334456667778885 456677
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
+..||+|+.|+++++ ++++.++..+++|||++.+|+++...+++.+.+++ ...+.++++|.+..
T Consensus 147 a~~LSGGQQQRLcIA---------RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ 210 (253)
T COG1117 147 ALGLSGGQQQRLCIA---------RALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ 210 (253)
T ss_pred ccCCChhHHHHHHHH---------HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH
Confidence 889999999999999 99999999999999999999999999999999998 56778889997643
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.3e-20 Score=149.87 Aligned_cols=180 Identities=24% Similarity=0.224 Sum_probs=132.0
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++.++|+|+||||||||++.+++.+.+..+.| ++|+.+.-.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v--------------------------------~~~g~~~~~- 70 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV--------------------------------LVDGLDTSS- 70 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE--------------------------------EECCeeccc-
Confidence 46788999999999999999999999999998877665 333333210
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
......+...+..+.+.++. .+...++.+++.+.+++.|....+++-..-...+..++-. ++++.+..|
T Consensus 71 -----~~~~~~~~~~vG~VfQnpd~-----q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~L 139 (235)
T COG1122 71 -----EKSLLELRQKVGLVFQNPDD-----QLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNL 139 (235)
T ss_pred -----hhhHHHhhcceEEEEECccc-----ccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCcccc
Confidence 01111222223333433332 3566677888888888876554444444444455555544 578889999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCCccc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVKWSD 239 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~ 239 (305)
|+|+.|++|.+ ..++.++..+++|||++++|+...+++.+.+.++... +.+.++++|+...+.+
T Consensus 140 SGGqkqRvaIA---------~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~ 204 (235)
T COG1122 140 SGGQKQRVAIA---------GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE 204 (235)
T ss_pred CCcceeeHHhh---------HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence 99999999999 9999999999999999999999999999999999877 5788889997654443
No 76
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=3.6e-20 Score=168.65 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=89.6
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc-
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI- 240 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i- 240 (305)
....+|+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|+...+..+
T Consensus 138 ~~~~LSgG~~qrv~iA---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~ 208 (500)
T TIGR02633 138 PVGDYGGGQQQLVEIA---------KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVC 208 (500)
T ss_pred chhhCCHHHHHHHHHH---------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhC
Confidence 3568999999999999 999999999999999999999999999999988865566677788864332221
Q ss_pred --------------cch-----HHHHHHHH-----HHh-hcc--------------CCC-----HHHHHhcCCCCCcc--
Q psy5649 241 --------------GGQ-----DEVKLKLR-----QSV-EWP--------------LKH-----PEAFARLGIKPPRG-- 274 (305)
Q Consensus 241 --------------~g~-----~~~~~~l~-----~~~-~~~--------------~~~-----~~~~~~~~~~~~~g-- 274 (305)
+.. +....... ... ..+ ..| ..+++++++....|
T Consensus 209 d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~ 288 (500)
T TIGR02633 209 DTICVIRDGQHVATKDMSTMSEDDIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEI 288 (500)
T ss_pred CEEEEEeCCeEeeecCcccCCHHHHHHHHhCccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcE
Confidence 000 10111010 000 000 112 13566677766666
Q ss_pred eeeecCCCchHHHHHHHHhhhcC
Q psy5649 275 ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 275 ill~GppG~GKT~la~~lA~~~~ 297 (305)
+.|.||||+|||||.++|++...
T Consensus 289 ~~l~G~NGsGKSTLl~~l~G~~~ 311 (500)
T TIGR02633 289 LGVAGLVGAGRTELVQALFGAYP 311 (500)
T ss_pred EEEeCCCCCCHHHHHHHHhCCCC
Confidence 89999999999999999998753
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.7e-16 Score=133.32 Aligned_cols=153 Identities=18% Similarity=0.287 Sum_probs=115.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCC----CeEEEEccccccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA----PSLLLLDNLDVLC 85 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~vl~ide~d~l~ 85 (305)
-..-.++.|||||||||||+++.||+..+.+|..+++. -...+.++.+++.++... ..|||+||++.+.
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-------~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn 117 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-------TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN 117 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-------cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC
Confidence 34556799999999999999999999999999999764 335678999999996543 5899999999874
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC--CCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhc--
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS--LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTK-- 161 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~--~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~-- 161 (305)
..+ -..|+..++ .+.+++|++|+. .-++++++++ |. ..+++...+.++...+++..+..
T Consensus 118 K~Q---------QD~lLp~vE-----~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 118 KAQ---------QDALLPHVE-----NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred hhh---------hhhhhhhhc-----CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhh
Confidence 322 234556665 788888988864 5678999998 54 66789999999999988863332
Q ss_pred CCC-----CCCHHhHHHHHHHcCCCcHHhH
Q psy5649 162 VPH-----SLSTDQIQQVAFITHGFVGGDL 186 (305)
Q Consensus 162 ~~~-----~ls~~~~~~la~~t~g~~~~di 186 (305)
.+. .++++.++.++..+.|-..+-+
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 222 2667778888887766544443
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=5.5e-16 Score=121.97 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=105.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCch
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSD 92 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~ 92 (305)
-.+++||||||+||||||+.+|++++.++...++..+.. .+ .+..++... ....||||||++.+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~~----dl~~il~~l--~~~~ILFIDEIHRlnk------ 115 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--AG----DLAAILTNL--KEGDILFIDEIHRLNK------ 115 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--CH----HHHHHHHT----TT-EEEECTCCC--H------
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--HH----HHHHHHHhc--CCCcEEEEechhhccH------
Confidence 457999999999999999999999999999888754321 12 223333332 3466999999998732
Q ss_pred hHHHHHHHHHHHHhhhcc-----c----------CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 93 QERRLLSCLVTQVDRLHE-----L----------QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~-----~----------~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
..-..+...|+...- . -++..+|++|+....+...++. ||.....+...+..+...|++.
T Consensus 116 ---~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 116 ---AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp ---HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHH
T ss_pred ---HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHH
Confidence 223345555553221 0 1468899999999999999998 9988889999999999999987
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
-.......++.+....+|..+.| +|+-..++++++
T Consensus 191 ~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 191 SARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp CCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 66777788888888899977665 444445555443
No 79
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.71 E-value=7e-18 Score=136.56 Aligned_cols=170 Identities=21% Similarity=0.193 Sum_probs=117.2
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.|.||||||||||+|++++.+++..+.| ++|+-+.-
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V--------------------------------~l~g~~i~-- 67 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV--------------------------------LLDGKDIA-- 67 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE--------------------------------EECCCchh--
Confidence 46778999999999999999999999999998877666 44443321
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH--------HHH
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL--------HCL 158 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~--------~~~ 158 (305)
......++..+.++-+......... + ..+-..||+.+.=.+..++..++..+. ..+
T Consensus 68 -----~~~~kelAk~ia~vpQ~~~~~~~~t------V-----~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l 131 (258)
T COG1120 68 -----SLSPKELAKKLAYVPQSPSAPFGLT------V-----YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL 131 (258)
T ss_pred -----hcCHHHHhhhEEEeccCCCCCCCcE------E-----eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH
Confidence 1122223333333322211111111 1 111223566544444566666655442 235
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.++...++|+|++|++..+ +++++++..+++|||++.+|....-++++.++++.. .+.+.+++.|+..
T Consensus 132 a~r~~~~LSGGerQrv~iA---------rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN 200 (258)
T COG1120 132 ADRPVDELSGGERQRVLIA---------RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN 200 (258)
T ss_pred hcCcccccChhHHHHHHHH---------HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 5566788999999999999 999999999999999999999999999999999974 4777888888653
No 80
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=3e-19 Score=141.65 Aligned_cols=178 Identities=21% Similarity=0.221 Sum_probs=109.8
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.++||+|||||||+..+++...+..+.+ ++++.|.-..
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v--------------------------------~i~g~d~~~l 72 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV--------------------------------LINGKDLTKL 72 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE--------------------------------EECCEEcCcC
Confidence 57789999999999999999999999999887766554 3443332111
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+. .........-+.++.+... ++..-+..+++...+.-.+..........-...+++++.....+++|.++
T Consensus 73 ~~---~~~~~~R~~~iGfvFQ~~n------Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eL 143 (226)
T COG1136 73 SE---KELAKLRRKKIGFVFQNFN------LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143 (226)
T ss_pred CH---HHHHHHHHHhEEEECccCC------CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhc
Confidence 10 0000111111111111111 22223444444332222111110000001111222233322333668899
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
|+||.||+|.+ ++++.+|...++|||+.++|..+.+.+.+.+..+... +.+.++++|+.
T Consensus 144 SGGqqQRVAIA---------RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 144 SGGQQQRVAIA---------RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred CHHHHHHHHHH---------HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 99999999999 9999999999999999999999999999999999655 67888899975
No 81
>KOG0737|consensus
Probab=99.70 E-value=1.3e-17 Score=138.41 Aligned_cols=76 Identities=49% Similarity=0.843 Sum_probs=68.9
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcC-CCCCcceeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLG-IKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
..+=.+.|+||||++.+++.+++.+..|+++++.|...+ +++++|||||||||||||++|+++|++.|.+||.|.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 444567899999999999999999999999999997554 4688999999999999999999999999999999974
No 82
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.70 E-value=1e-18 Score=147.70 Aligned_cols=171 Identities=24% Similarity=0.286 Sum_probs=123.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+-+.|.|||||||||++|+||+...+..+.| +||+-+..-
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I--------------------------------~l~G~~i~~- 71 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI--------------------------------LLDGEDITD- 71 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE--------------------------------EECCEECCC-
Confidence 47788999999999999999999999999888877766 445444321
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcc-eEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLD-QEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~-~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
.+..++.+..+++. ..++.-.|+.+++.+.|+..+... .++.-.+....+.+++-. +.++++.+
T Consensus 72 ----lpp~kR~ig~VFQ~----------YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~q 136 (352)
T COG3842 72 ----VPPEKRPIGMVFQS----------YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQ 136 (352)
T ss_pred ----CChhhcccceeecC----------cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhh
Confidence 12233333333321 123455577888888887322221 223334444555555434 77889999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+|+|+.|++|.+ ++|+.++..+++|||.+.+|..-.+++...++++... +.+.+.++|+.
T Consensus 137 LSGGQqQRVALA---------RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 137 LSGGQQQRVALA---------RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred hChHHHHHHHHH---------HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 999999999999 9999999999999999999998888888888777544 66777888864
No 83
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.3e-18 Score=159.16 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=56.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
+++....+|+|+.++++.+ ++++.+|..+++|||++++|..+..++.+.+..+. .+.++++|+...
T Consensus 143 ~~~~~~~LSgGerqRv~LA---------~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~---~tviivsHd~~~ 208 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLA---------QALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ---GTLILISHDRDF 208 (638)
T ss_pred hcCchhhcCHHHHHHHHHH---------HHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCC---CeEEEEeCCHHH
Confidence 4555678999999999999 99999999999999999999999999999998773 356777876543
No 84
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=6.8e-19 Score=138.61 Aligned_cols=175 Identities=18% Similarity=0.214 Sum_probs=113.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccc--cccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM--FSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
++.+.+|+.+.|+|++|||||||+|++++...+..+.|....- ....... -+.-.+..+
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-------------------~~~~~VQmV 87 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK-------------------AFYRPVQMV 87 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch-------------------hhccceeEE
Confidence 4678899999999999999999999999999988877743221 0000000 000111111
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 85 CTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
+.+...+-..+..+...+ .+++...|. ...+....+..+.+++-..+++++|+
T Consensus 88 FQDp~~SLnP~~tv~~~l-------------------------~Epl~~~~~--~~~~~~i~~~L~~VgL~~~~l~R~P~ 140 (252)
T COG1124 88 FQDPYSSLNPRRTVGRIL-------------------------SEPLRPHGL--SKSQQRIAELLDQVGLPPSFLDRRPH 140 (252)
T ss_pred ecCCccccCcchhHHHHH-------------------------hhhhccCCc--cHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 111111000001111111 111111110 01111144556666666788999999
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
++|+|++||+|.+ ++++.++..+++|||++.+|......+.+.+.+++.. +.+.++++|+..-
T Consensus 141 eLSGGQ~QRiaIA---------RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 141 ELSGGQRQRIAIA---------RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred hcChhHHHHHHHH---------HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 9999999999999 9999999999999999999999999999999888765 6777888886543
No 85
>KOG0729|consensus
Probab=99.69 E-value=5.7e-17 Score=128.89 Aligned_cols=74 Identities=51% Similarity=0.920 Sum_probs=71.2
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
-+.|+++++|+||..+..+.++++++.|+.+|+.|-++|+.+|+|+|||||||||||++|+|+|+..+.-||+|
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirv 242 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRV 242 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEee
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999987
No 86
>KOG0739|consensus
Probab=99.69 E-value=2.4e-17 Score=132.85 Aligned_cols=79 Identities=46% Similarity=0.789 Sum_probs=72.2
Q ss_pred hhhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 225 MRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 225 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
...++.+.|.+.|+|+.|++..|+.|.|.+..|+++|.+|.. +..|-+|||||||||||||.||+|+|.|.+-.|+||.
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 345678889999999999999999999999999999999975 4556688999999999999999999999999999985
No 87
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-17 Score=152.53 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=53.6
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+....+|+|+.++++.+ ++++.++..+++|||++++|......+.+.+.+. +.+.++++|+..
T Consensus 151 ~~~~~LSgGq~qrv~lA---------~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsHd~~ 213 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLA---------QALFSNPDILLLDEPTNNLDINTIRWLEDVLNER---NSTMIIISHDRH 213 (530)
T ss_pred CchhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 45678999999999999 9999999999999999999999999999988642 456677777644
No 88
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=6.4e-17 Score=148.61 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|++|+++.+ .+++.++..+++|||++.+|......+.+.+.++.. +.+.++++|+..
T Consensus 205 ~~~~~~~~LSgGe~qrv~ia---------~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 205 ILDRDISELSGGELQRVAIA---------AALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 45666778999999999999 999999999999999999999999999999999876 677788888654
No 89
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.4e-18 Score=138.08 Aligned_cols=168 Identities=22% Similarity=0.188 Sum_probs=106.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+|+.+.|.||||||||||++.+|+...+..++|....-.-.. -.|-+-++=.-+.+++
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~-----------------p~~~~~~vFQ~~~LlP 85 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG-----------------PGPDIGYVFQEDALLP 85 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC-----------------CCCCEEEEeccCcccc
Confidence 46789999999999999999999999999999888776332110000 0000101100011111
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+ -+..+++...+...|.-..+-.-......+++++ ..+.+++|.++
T Consensus 86 -----------------W----------------~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL-~~~~~~~P~qL 131 (248)
T COG1116 86 -----------------W----------------LTVLDNVALGLELRGKSKAEARERAKELLELVGL-AGFEDKYPHQL 131 (248)
T ss_pred -----------------h----------------hhHHhhheehhhccccchHhHHHHHHHHHHHcCC-cchhhcCcccc
Confidence 1 1223333333333221000000011112222222 23566789999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
|+|+.|++|.+ ++++.++..+++|||.+.+|..+...+.+.+.++... ..+.++++|+.
T Consensus 132 SGGMrQRVaiA---------RAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi 191 (248)
T COG1116 132 SGGMRQRVAIA---------RALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV 191 (248)
T ss_pred ChHHHHHHHHH---------HHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 99999999999 9999999999999999999999999988888777544 56777888863
No 90
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.68 E-value=7.2e-17 Score=140.85 Aligned_cols=75 Identities=51% Similarity=0.932 Sum_probs=71.4
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.|...|+||||++.+++.+.+.+.+|+.+++.|.++|+.+|+|++||||||||||++|+++|++++.+|++|.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999874
No 91
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=1.7e-15 Score=143.89 Aligned_cols=198 Identities=21% Similarity=0.270 Sum_probs=131.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc---------ccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF---------SKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
.+..++|+||||||||++++++|+.++.+++.++++... ..+.|.....+.+.|..+....| |++|||+|
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEid 424 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEID 424 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechh
Confidence 455799999999999999999999999999999875432 13445555666777887766666 78999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhh-----hcc-------cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHH
Q psy5649 83 VLCTGRNRSDQERRLLSCLVTQVDR-----LHE-------LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~~~-----~~~-------~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
.+..+... +. .+.+++.++. +.+ .-+.+++|+|+|..+.+++++++ || ..++++.++..+
T Consensus 425 k~~~~~~~-~~----~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e 496 (775)
T TIGR00763 425 KIGSSFRG-DP----ASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEE 496 (775)
T ss_pred hcCCccCC-CH----HHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHH
Confidence 99754322 22 1233333331 111 12567889999999999999998 88 579999999999
Q ss_pred HHHHHHHHHh-----cC-----CCCCCHHhHHHHHHH-cCCCcHHhHHHHHHHHHHHHhhh----hcCC-----CccccH
Q psy5649 151 RAAILHCLLT-----KV-----PHSLSTDQIQQVAFI-THGFVGGDLATLLSNATSALLVE----TEGT-----GQVLSY 210 (305)
Q Consensus 151 r~~i~~~~l~-----~~-----~~~ls~~~~~~la~~-t~g~~~~di~~l~~~~~~~~~~~----~~~~-----~~~~~~ 210 (305)
+..|++.++. .. ...++++.+..++.. |..+-.++|+..+.+.......+ .... ...++.
T Consensus 497 ~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~ 576 (775)
T TIGR00763 497 KLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITP 576 (775)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCH
Confidence 9999987652 11 235677777777653 33344555555444433332221 1111 135566
Q ss_pred HHHHHHhh
Q psy5649 211 DGVMRALD 218 (305)
Q Consensus 211 ~~~~~~l~ 218 (305)
+++.+.+.
T Consensus 577 ~~~~~~lg 584 (775)
T TIGR00763 577 DNLKKYLG 584 (775)
T ss_pred HHHHHhcC
Confidence 66666655
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=1e-14 Score=125.72 Aligned_cols=187 Identities=19% Similarity=0.216 Sum_probs=130.1
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
.+..+++|+||||||||++++++|++++..+..+++..+.. ...+..++... ..+.+|+|||+|.+...
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--- 117 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPV--- 117 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHhc--ccCCEEEEecHhhcchH---
Confidence 34568999999999999999999999999887776553321 12334444432 35679999999987421
Q ss_pred chhHHHHHHHHHHHHhhhc------c---------cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH
Q psy5649 91 SDQERRLLSCLVTQVDRLH------E---------LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL 155 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~------~---------~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~ 155 (305)
.. .. +...++... + .-+++.+|++|+....+++.+++ ||...++++.++..++.+++
T Consensus 118 --~~-e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il 189 (328)
T PRK00080 118 --VE-EI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIV 189 (328)
T ss_pred --HH-HH---HHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHH
Confidence 11 11 222222111 0 01346789999999999999988 88888999999999999999
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+.........++++.+..++..+.|.. +.+..++.....+...+ ....++.+.+..++..+
T Consensus 190 ~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~---~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 190 KRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVK---GDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHh
Confidence 988888888899999999999888865 55566666554443322 22245566666666544
No 93
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=7.4e-19 Score=142.77 Aligned_cols=182 Identities=20% Similarity=0.222 Sum_probs=134.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.++|.+|+|||||+|++...-.+..+.| ++|+-|...-
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v--------------------------------~v~G~di~~l 73 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV--------------------------------FVDGQDLTAL 73 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE--------------------------------EEcCEecccC
Confidence 57889999999999999999999999998877777666 5666443322
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+.......++.+..+++.+. ++..-++.+++...|+-.|....+++.+.-...+.+++- ...+++|.+|
T Consensus 74 ~~~~Lr~~R~~IGMIFQhFn----------LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qL 142 (339)
T COG1135 74 SEAELRQLRQKIGMIFQHFN----------LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQL 142 (339)
T ss_pred ChHHHHHHHhhccEEecccc----------ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhc
Confidence 21111122222222222222 355567888888888776644455555555555555554 4778899999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCCcccc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~i 240 (305)
|+|+.|+++++ ++|+.+|..++.||+++.+|+.+.+.+.+.+.+++.. +.+.++++|.+.-..+|
T Consensus 143 SGGQKQRVaIA---------RALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~i 208 (339)
T COG1135 143 SGGQKQRVAIA---------RALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRI 208 (339)
T ss_pred CcchhhHHHHH---------HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999766 77888899977655554
No 94
>KOG0738|consensus
Probab=99.67 E-value=9.1e-17 Score=133.93 Aligned_cols=78 Identities=45% Similarity=0.757 Sum_probs=71.1
Q ss_pred hhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.++..++...|+||.|+.++|+-|+|++..|+.+|+.|+. .++|=+|+|++||||||||+||||+|.|++-.|+.|.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 45667788999999999999999999999999999999986 3456689999999999999999999999999999884
No 95
>PLN03073 ABC transporter F family; Provisional
Probab=99.67 E-value=4.1e-17 Score=152.57 Aligned_cols=67 Identities=13% Similarity=0.004 Sum_probs=56.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
.++....+|+|+.++++.+ ++++.++..+++|||++++|.....++.+.+..+. .+.++++|+...+
T Consensus 338 ~~~~~~~LSgG~k~rv~LA---------~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~---~tviivsHd~~~l 404 (718)
T PLN03073 338 QVKATKTFSGGWRMRIALA---------RALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP---KTFIVVSHAREFL 404 (718)
T ss_pred HhCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHH
Confidence 3455678999999999999 99999999999999999999999999999998873 4567777765433
No 96
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=4.8e-18 Score=133.34 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=123.3
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.+.||+|||||||+|.+.+.+.+..++| +++..|.--
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI--------------------------------~i~G~~i~~- 74 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI--------------------------------LIDGEDIPQ- 74 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE--------------------------------EEcCcchhc-
Confidence 46789999999999999999999999999999988777 444443210
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceE-EEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQE-IELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~-i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
-+ ......+..-+..+.+. + .++-.-|..+++...++...+..+. ++--..-..+.+++-....+.+|.+
T Consensus 75 -ls--~~~~~~ir~r~GvlFQ~----g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsE 145 (263)
T COG1127 75 -LS--EEELYEIRKRMGVLFQQ----G--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSE 145 (263)
T ss_pred -cC--HHHHHHHHhheeEEeec----c--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchh
Confidence 00 11111111112222221 1 1344557788888877664433110 0000001111111112235678999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCCcccc
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~i 240 (305)
+|+|..+|+|.+ ++++.++....+|||++++|+++...|.+.+.+++.+ +.+.++++|+......+
T Consensus 146 LSGGM~KRvaLA---------RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 146 LSGGMRKRVALA---------RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred hcchHHHHHHHH---------HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhh
Confidence 999999999999 9999999999999999999999999999999998776 77888999987655444
No 97
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.66 E-value=3.9e-18 Score=158.96 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=55.2
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+..+. .+.++++|+..
T Consensus 151 ~~~~~~LSgGekqRv~LA---------raL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~ 214 (635)
T PRK11147 151 DAALSSLSGGWLRKAALG---------RALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRS 214 (635)
T ss_pred CCchhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHH
Confidence 344568999999999999 99999999999999999999999999999998874 35667777654
No 98
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.66 E-value=2.3e-14 Score=122.56 Aligned_cols=185 Identities=19% Similarity=0.221 Sum_probs=125.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~ 91 (305)
.+.+++|+||||||||++++++|++++.++..+.++.... ...+...+... ..+.+++|||++.+.+..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~--- 97 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPAV--- 97 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHHH---
Confidence 3557999999999999999999999998876665443211 11222222222 356799999999875321
Q ss_pred hhHHHHHHHHHHHHhhhc---------------ccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 92 DQERRLLSCLVTQVDRLH---------------ELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~---------------~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
...+...++... ...+++.++++|+....+++.+++ ||...+.++.++..+..++++
T Consensus 98 ------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~ 169 (305)
T TIGR00635 98 ------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVS 169 (305)
T ss_pred ------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHH
Confidence 111222222111 112447788999999999999888 888888999999999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
.........++++.+..++..+.|+. +.+..++..+...+... ....++.+.+..++..
T Consensus 170 ~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~---~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 170 RSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR---GQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHH
Confidence 88877778899989999999988866 44556666543322211 1123555566666554
No 99
>KOG0927|consensus
Probab=99.65 E-value=6.9e-17 Score=140.01 Aligned_cols=74 Identities=15% Similarity=0.029 Sum_probs=58.1
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.....+...++|+|+..|++.+ ++|+.+|..+++|||+..+|..+...+.+.+.++... ..+++.|+..
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLA---------r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~--~lVi~sh~QD 280 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALA---------RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI--ILVIVSHSQD 280 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHH---------HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc--eEEEEecchh
Confidence 3344555678999999999999 9999999999999999999999999999999888642 3344555554
Q ss_pred Ccccc
Q psy5649 236 KWSDI 240 (305)
Q Consensus 236 ~~~~i 240 (305)
.+.++
T Consensus 281 fln~v 285 (614)
T KOG0927|consen 281 FLNGV 285 (614)
T ss_pred hhhhH
Confidence 44443
No 100
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=8.3e-17 Score=148.12 Aligned_cols=64 Identities=20% Similarity=0.071 Sum_probs=54.9
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++...++|+|+.++++.+ ++++.++..+++|||++++|......+.+.+.++. .+.++++|+..
T Consensus 158 ~~~~~~LSgGqkqrv~la---------~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~ 221 (556)
T PRK11819 158 DAKVTKLSGGERRRVALC---------RLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRY 221 (556)
T ss_pred cCchhhcCHHHHHHHHHH---------HHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 455678999999999999 99999999999999999999999999999998874 25667777543
No 101
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.64 E-value=2e-17 Score=130.73 Aligned_cols=175 Identities=17% Similarity=0.187 Sum_probs=116.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++-+.|+|||||||||++|.+.+.+.+..+.| +||+.+..-
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I--------------------------------~i~g~~i~~- 67 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI--------------------------------LIDGEDISD- 67 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE--------------------------------EECCeeccc-
Confidence 57789999999999999999999999999888887766 455544310
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH-HHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL-HCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~-~~~l~~~~~~ 165 (305)
.+.-.-++.+...++.+-.++ -.+..+++..-..-.|--...+.-+..+..+.+++- ..+.+++|++
T Consensus 68 --~d~~~LRr~IGYviQqigLFP----------h~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 68 --LDPVELRRKIGYVIQQIGLFP----------HLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred --CCHHHHHHhhhhhhhhcccCC----------CccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 000122333444444333222 123333332211111111122222222333444443 3588899999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
||+|+.|++..+ ++++.++..+++|||...+|++++..+.+-+.+++.. +.+.+.++|+..
T Consensus 136 LSGGQQQRVGv~---------RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid 197 (309)
T COG1125 136 LSGGQQQRVGVA---------RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID 197 (309)
T ss_pred cCcchhhHHHHH---------HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH
Confidence 999999999999 9999999999999999999999999888887777554 667788898754
No 102
>KOG0731|consensus
Probab=99.63 E-value=3.8e-16 Score=142.28 Aligned_cols=71 Identities=46% Similarity=0.789 Sum_probs=67.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
..+.+.|+.|.+++|+.++|.+. .+++|+.|.+.|..+|+|+||.||||||||+||||+|+|.|+||++|.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svS 376 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVS 376 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeec
Confidence 44789999999999999999988 589999999999999999999999999999999999999999999984
No 103
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.63 E-value=4.2e-16 Score=143.47 Aligned_cols=64 Identities=22% Similarity=0.086 Sum_probs=54.4
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+..+. .+.++++|+..
T Consensus 156 ~~~~~~LSgGqkqrv~la---------~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~ 219 (552)
T TIGR03719 156 DADVTKLSGGERRRVALC---------RLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRY 219 (552)
T ss_pred cCchhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHH
Confidence 345668999999999999 99999999999999999999999999999988774 25666777543
No 104
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.62 E-value=5.3e-16 Score=136.05 Aligned_cols=76 Identities=50% Similarity=0.962 Sum_probs=71.9
Q ss_pred hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
..+.+...|++|+|++++++.+.+.+.+|+.+++.|+.+|+.+|+|++||||||||||++|+++|.+++.+|+.+.
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~ 197 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 197 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEee
Confidence 3456788999999999999999999999999999999999999999999999999999999999999999999874
No 105
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.62 E-value=8.2e-18 Score=131.68 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-h
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-A 224 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 224 (305)
.+..+|++|++..+ .....||+|+.||++++ ++|+++|...++|||.+.+|+.+.+.+++.+++.... +
T Consensus 129 l~aLervgi~~~A~-qra~~LSGGQQQRVaIA---------RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g 198 (258)
T COG3638 129 LDALERVGILDKAY-QRASTLSGGQQQRVAIA---------RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG 198 (258)
T ss_pred HHHHHHcCcHHHHH-HHhccCCcchhHHHHHH---------HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC
Confidence 34455555555332 34678999999999999 9999999999999999999999999999999998655 4
Q ss_pred hhhhhccC
Q psy5649 225 MRQVLVEV 232 (305)
Q Consensus 225 ~~~~~~~~ 232 (305)
.+.+..-|
T Consensus 199 ~Tvi~nLH 206 (258)
T COG3638 199 ITVIVNLH 206 (258)
T ss_pred CEEEEEec
Confidence 55555544
No 106
>KOG0728|consensus
Probab=99.62 E-value=7.4e-16 Score=121.56 Aligned_cols=73 Identities=42% Similarity=0.869 Sum_probs=69.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.|+..++-+||++...+.+.++++.|.+||++|+.+|+..|+|+|||||||||||+||+++|....+.||+|.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 3666778899999999999999999999999999999999999999999999999999999999999999984
No 107
>KOG0652|consensus
Probab=99.62 E-value=5.7e-16 Score=122.90 Aligned_cols=73 Identities=42% Similarity=0.852 Sum_probs=68.6
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEE
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFIS 302 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~ 302 (305)
-+.|...++||||++...+.+.+.+..|..|++.|.++|+++|+|+|+|||||||||++|++.|.+.+..|+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK 235 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK 235 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH
Confidence 4457788999999999999999999999999999999999999999999999999999999999999888864
No 108
>KOG0726|consensus
Probab=99.62 E-value=4.9e-16 Score=125.05 Aligned_cols=71 Identities=42% Similarity=0.908 Sum_probs=68.2
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
|..+++||||++...+.+.+.+..|+.||+.|...|+.+|+|+.|||+||||||+||+|+|++....|++|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv 250 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV 250 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999876
No 109
>PRK06893 DNA replication initiation factor; Validated
Probab=99.61 E-value=3.6e-14 Score=115.85 Aligned_cols=150 Identities=15% Similarity=0.204 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
..++|+||+|||||+|++++|+++ +....+++.... ......+++.. .+..+|+|||++.+.....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 357999999999999999999875 334445544321 11111222222 2456999999998753321
Q ss_pred chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCC---ccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 91 SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD---VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~---~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
.. ..++..++...+.+..++++.++..+..++ +.++++.++...++++.|+.++|.++++.........++
T Consensus 109 ---~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~ 182 (229)
T PRK06893 109 ---WE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS 182 (229)
T ss_pred ---HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11 124444444444234455555555666665 567774445678899999999999999988877788899
Q ss_pred HHhHHHHHHHcCC
Q psy5649 168 TDQIQQVAFITHG 180 (305)
Q Consensus 168 ~~~~~~la~~t~g 180 (305)
.+.++.++...+|
T Consensus 183 ~~v~~~L~~~~~~ 195 (229)
T PRK06893 183 DEVANFLLKRLDR 195 (229)
T ss_pred HHHHHHHHHhccC
Confidence 9999999977543
No 110
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=3.7e-16 Score=115.86 Aligned_cols=169 Identities=20% Similarity=0.192 Sum_probs=107.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+|+.++|+||+|||||||.|++|....+..+.+ ++.+
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l--------------------------------~f~G------ 64 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL--------------------------------LFEG------ 64 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE--------------------------------EEcC------
Confidence 46778999999999999999999999999877766555 2222
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCcc--ccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVS--LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~--l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
.+-+........+-+.+..+-+. +++ -++.+++-+. +++ .|++.... .+...|.++-..++.+...
T Consensus 65 -e~vs~~~pea~Rq~VsY~~Q~pa------Lfg-~tVeDNlifP~~~r~-rr~dr~aa---~~llar~~l~~~~L~k~it 132 (223)
T COG4619 65 -EDVSTLKPEAYRQQVSYCAQTPA------LFG-DTVEDNLIFPWQIRN-RRPDRAAA---LDLLARFALPDSILTKNIT 132 (223)
T ss_pred -ccccccChHHHHHHHHHHHcCcc------ccc-cchhhccccchHHhc-cCCChHHH---HHHHHHcCCchhhhcchhh
Confidence 22221112222222233322111 122 2444554322 222 13321111 1223444444566777788
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC-CchhhhhhccCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK-PSAMRQVLVEVPN 234 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 234 (305)
++|+|+.|++|.. +.|.-.+..+++||+++.+|+...+.+.+.+.++. +......-++|++
T Consensus 133 ~lSGGE~QriAli---------R~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 133 ELSGGEKQRIALI---------RNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred hccchHHHHHHHH---------HHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh
Confidence 9999999999988 99999999999999999999999888888877664 4444444466654
No 111
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.2e-16 Score=128.22 Aligned_cols=175 Identities=23% Similarity=0.238 Sum_probs=117.2
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.++.++.+.|.|||||||||++|+||+...++.+.|- +++- .++.
T Consensus 22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~--------------------------------~~~~-~l~D 68 (345)
T COG1118 22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR--------------------------------LNGR-VLFD 68 (345)
T ss_pred eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE--------------------------------ECCE-eccc
Confidence 467899999999999999999999999999988877762 2221 1111
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCC-CCcc-eEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTP-GRLD-QEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~-~r~~-~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
... .....+.+..+++... ++--.|+.+++.+.++.. .|+. .++.-..-+..+.++ +..+.+++|.
T Consensus 69 ~~~-~~~~~R~VGfvFQ~YA----------LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvq-L~~la~ryP~ 136 (345)
T COG1118 69 VSN-LAVRDRKVGFVFQHYA----------LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQ-LEGLADRYPA 136 (345)
T ss_pred hhc-cchhhcceeEEEechh----------hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhc-ccchhhcCch
Confidence 111 1112222222222111 233457788888888652 1110 011111111111111 1335678899
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++|+++.|++|.+ ++++.++..+++|||...+|..-.+++...+.++... +.+.+.++|+..
T Consensus 137 QLSGGQrQRVALA---------RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e 199 (345)
T COG1118 137 QLSGGQRQRVALA---------RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199 (345)
T ss_pred hcChHHHHHHHHH---------HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH
Confidence 9999999999999 9999999999999999999999999999999988766 677788888643
No 112
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=7.3e-18 Score=141.31 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.++.+|+++|+|+.|++.++ .+++.++..++.|||+..+|......+.+.++.++.. ++..+.++|+..
T Consensus 150 rl~~yPHeLSGGqRQRVMIA---------MALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~ 219 (534)
T COG4172 150 RLDAYPHELSGGQRQRVMIA---------MALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG 219 (534)
T ss_pred hhhhCCcccCcchhhHHHHH---------HHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH
Confidence 46678999999999999999 9999999999999999999999999999999988655 677777888653
No 113
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.60 E-value=1.9e-15 Score=132.83 Aligned_cols=74 Identities=42% Similarity=0.899 Sum_probs=70.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.|...|+||||++..++.+.+.+.+|+.+++.|..+|+.++.|++||||||||||++|+++|++++.+|+.|.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999874
No 114
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.3e-16 Score=128.51 Aligned_cols=80 Identities=19% Similarity=0.106 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhh
Q psy5649 147 SRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMR 226 (305)
Q Consensus 147 ~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 226 (305)
...++++++. +.++...+||+||+|++..| ++|+++|..+++|||..+.|+.+..+|.+.+.+++..+.+
T Consensus 122 ~aL~~Vgm~~-~~~r~i~~LSGGQ~QRV~lA---------RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~t 191 (254)
T COG1121 122 EALERVGMED-LRDRQIGELSGGQKQRVLLA---------RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKT 191 (254)
T ss_pred HHHHHcCchh-hhCCcccccCcHHHHHHHHH---------HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 4456666654 67777889999999999999 9999999999999999999999999999999999988888
Q ss_pred hhhccCCCCC
Q psy5649 227 QVLVEVPNVK 236 (305)
Q Consensus 227 ~~~~~~~~~~ 236 (305)
.++++|+...
T Consensus 192 Il~vtHDL~~ 201 (254)
T COG1121 192 VLMVTHDLGL 201 (254)
T ss_pred EEEEeCCcHH
Confidence 9999997643
No 115
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.60 E-value=1.4e-15 Score=135.38 Aligned_cols=71 Identities=48% Similarity=0.936 Sum_probs=67.0
Q ss_pred hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCce
Q psy5649 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLN 299 (305)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~ 299 (305)
..+.|...|++|||++..++.+.+.+.+|+.+++.|+.+|+.+|+|+|||||||||||++|+++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35568899999999999999999999999999999999999999999999999999999999999998765
No 116
>PRK04195 replication factor C large subunit; Provisional
Probab=99.59 E-value=8.7e-14 Score=125.78 Aligned_cols=160 Identities=20% Similarity=0.276 Sum_probs=114.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHh------CCCeEEEEcccccccC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALD------HAPSLLLLDNLDVLCT 86 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~vl~ide~d~l~~ 86 (305)
+..++|+|||||||||+++++|++++.+++++++++... ...+..+...+.. ..+.+|+|||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 678999999999999999999999999999999876431 2233444333332 2567999999998865
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCc-cccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDV-SLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~-~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
..+. .....+...++. ....+|.++|.+..+.. .+++ +. ..+.++.|+..+...+++..+...+..
T Consensus 113 ~~d~-----~~~~aL~~~l~~-----~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~ 179 (482)
T PRK04195 113 NEDR-----GGARAILELIKK-----AKQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIE 179 (482)
T ss_pred ccch-----hHHHHHHHHHHc-----CCCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3221 223344444442 22235566788777766 5655 33 679999999999999999888888888
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
++.+.++.++..+.| |++.++.....
T Consensus 180 i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 180 CDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred CCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 999999999988654 66666555444
No 117
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=5.2e-14 Score=126.34 Aligned_cols=191 Identities=19% Similarity=0.309 Sum_probs=121.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
+.++|+||+|||||+|++++++++ +..++++++.++..............-|.... ..+.+|+|||++.+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 45678888876654332222111112222222 246799999999875321
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCC---CCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 89 NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN---VDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
.. ...++..++...+ ++..+++.+...+.. +++.+++ ||. ..+++..|+.++|..|++..+...+
T Consensus 228 ----~~---~~~l~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~ 297 (450)
T PRK00149 228 ----RT---QEEFFHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG 297 (450)
T ss_pred ----HH---HHHHHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence 11 1233343433333 223345555555544 5567776 775 5789999999999999998888778
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
..++++.++.++....| +.+++..++.......... ...++.+.+.+++...
T Consensus 298 ~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~----~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 298 IDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT----GKPITLELAKEALKDL 349 (450)
T ss_pred CCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh----CCCCCHHHHHHHHHHh
Confidence 88999999999977544 4555555555554433221 2235666666666654
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=1.5e-13 Score=110.66 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=119.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCC-CeEEEEcccccccCCCCCc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA-PSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~vl~ide~d~l~~~~~~~ 91 (305)
-.++||+||||.||||||+.+|++++.++-..++..+.. +++ +........ ..||||||++.+.+.-.
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--~gD-------laaiLt~Le~~DVLFIDEIHrl~~~vE-- 120 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--PGD-------LAAILTNLEEGDVLFIDEIHRLSPAVE-- 120 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--hhh-------HHHHHhcCCcCCeEEEehhhhcChhHH--
Confidence 458999999999999999999999999987776654421 111 222222233 35999999998854321
Q ss_pred hhHHHHHHHHHHHHhhhcc---------------cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 92 DQERRLLSCLVTQVDRLHE---------------LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~---------------~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
..+...|+.+.- .-++..+|++|+....+...|+. ||.....+...+..+...|+.
T Consensus 121 -------E~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~ 191 (332)
T COG2255 121 -------EVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVK 191 (332)
T ss_pred -------HHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHH
Confidence 122233322210 02678899999999999999998 999999999999999999998
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHh
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALL 198 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~ 198 (305)
........+++.+....+|..+.|- |+=..+|+++...++.
T Consensus 192 r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrRVRDfa~ 232 (332)
T COG2255 192 RSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRRVRDFAQ 232 (332)
T ss_pred HHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHHHHHHHH
Confidence 7777778889988899999887774 4444566666654443
No 119
>KOG2028|consensus
Probab=99.58 E-value=1.1e-13 Score=114.86 Aligned_cols=186 Identities=19% Similarity=0.314 Sum_probs=130.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCe---EEEEecccccccccchHHHHHHHHHHHHHh-----CCCeEEEEcccc
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVH---TVVIQVADMFSKFYGEAEFRLKAAFDAALD-----HAPSLLLLDNLD 82 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~---~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~vl~ide~d 82 (305)
.....+.|+||||||||||++.|+...+.+ |+++++. ......++.+|+.++. .+..||||||++
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-------~a~t~dvR~ife~aq~~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-------NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIH 232 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc-------ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhh
Confidence 344579999999999999999999987665 6666543 2345678888888875 567899999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC--CCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS--LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~--~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+..... ..|+..++ ++.+.+|++|+. .-.++.+|.+ |. ..+-+..........|+.....
T Consensus 233 RFNksQQ---------D~fLP~VE-----~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 233 RFNKSQQ---------DTFLPHVE-----NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhhhhhh---------hcccceec-----cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHH
Confidence 8743221 23444444 678889998865 3456677777 44 4556667777777777765333
Q ss_pred ------c----CCC---CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 161 ------K----VPH---SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 161 ------~----~~~---~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+ .+. .++...++.++..+.|-+...+.+|-..+.....++..+....++.+|+.+.++.-
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 1 112 24455688899999998888887776655555556666666788889988887754
No 120
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=4.6e-13 Score=118.88 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=108.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccccccC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL----DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~vl~ide~d~l~~ 86 (305)
....+++|+||+||||||+++++++..+.++..+++... ....++.+++.+. .....+|+|||+|.+..
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~ 106 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK 106 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence 344579999999999999999999999999999987532 1234445555543 23567999999997632
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC--CCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC--
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS--LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV-- 162 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~--~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~-- 162 (305)
.....++..++ ...+++|++|+. ...+++++++ |+ ..+.++.++..+...+++..+...
T Consensus 107 ---------~~q~~LL~~le-----~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~ 169 (413)
T PRK13342 107 ---------AQQDALLPHVE-----DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKER 169 (413)
T ss_pred ---------HHHHHHHHHhh-----cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhc
Confidence 11223444444 345666666543 4577888888 76 778999999999999998766542
Q ss_pred CC-CCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 163 PH-SLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 163 ~~-~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.. .++.+.++.++..+.| .++.+..++..+
T Consensus 170 ~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 170 GLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred CCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 22 6778788888877654 333334444443
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.57 E-value=1e-13 Score=122.94 Aligned_cols=191 Identities=19% Similarity=0.315 Sum_probs=121.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHH-HHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEF-RLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
.+.++|+||+|+|||+|++++++++ +..++++++.++.......... .+..+.+.. ..+.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 4568999999999999999999876 5677888876654332211111 111222222 2356999999998753
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCC---CCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN---VDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
.. ... ..++..++...+ .+..+++.+...+.+ +++.+++ ||. ..++++.|+.++|..|++..+..
T Consensus 214 ~~----~~~---~~l~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 214 KE----RTQ---EEFFHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred CH----HHH---HHHHHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 21 111 223343433333 233344555444444 4456666 775 47899999999999999998888
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
....++++.++.+|....+ +.+++..++......+... ...++.+.+.+++...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~----~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT----GKPITLELAKEALKDL 337 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHh
Confidence 8889999999999976544 5566676666655444321 2235555566665543
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.57 E-value=1.9e-13 Score=111.80 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=111.8
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
...+..++|+||+|||||+++++++... +.++++++++++.... ..++... ..+.+|+|||+|.+..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 3556789999999999999999999875 4677888887664321 2222222 2345999999998743
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCC---ccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD---VSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~---~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
... .. ..+...++.....+ ..+++.++..+..++ +.+.+ |+ ...+.++.|+..++..+++....+
T Consensus 105 ~~~----~~---~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~ 174 (226)
T TIGR03420 105 QPE----WQ---EALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAAR 174 (226)
T ss_pred ChH----HH---HHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHH
Confidence 211 11 22333333332222 233333333443332 44554 44 468999999999999999887777
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhh
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLV 199 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~ 199 (305)
....++.+.++.++.. -+-+++++..++.+....+..
T Consensus 175 ~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 175 RGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred cCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 7778999889999874 666888888888887654443
No 123
>KOG0734|consensus
Probab=99.56 E-value=4e-15 Score=128.85 Aligned_cols=68 Identities=47% Similarity=0.800 Sum_probs=64.4
Q ss_pred CCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEE
Q psy5649 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFIS 302 (305)
Q Consensus 234 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~ 302 (305)
...++|+.|.++.|++++|+++ .++.|..|.++|-+.|+||||+||||||||+||||+|+|.+.+|+.
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~ 367 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY 367 (752)
T ss_pred ccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe
Confidence 5679999999999999999988 4788999999999999999999999999999999999999999986
No 124
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.56 E-value=4.1e-17 Score=132.52 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.|+++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 131 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 199 (216)
T TIGR00960 131 KAHALPMQLSGGEQQRVAIA---------RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN 199 (216)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999988655667778888754
No 125
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.56 E-value=2.9e-13 Score=123.13 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=126.1
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccccccchHHHHHH----------HHHH----
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSKFYGEAEFRLK----------AAFD---- 66 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~~~~~~~~~l~----------~~~~---- 66 (305)
+.+.+++|+||+|||||++|+++.... +.+++.++|+....+..+..+..+. ..|.
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 456789999999999999999997642 3578889886421100000000000 0000
Q ss_pred ------HHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh--------------------------cccCCe
Q psy5649 67 ------AALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL--------------------------HELQAC 114 (305)
Q Consensus 67 ------~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~ 114 (305)
........+|||||++.+.+. .. ..++..++.- ....+.
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~-----~q----~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 234 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV-----QM----NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADF 234 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH-----HH----HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccce
Confidence 011223479999999987432 11 2222222210 000123
Q ss_pred EEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 115 VVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 115 ~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++.+|++.++.+++++++ |+ .++.++.++.+++..|++..+++....++++.++.++..+ .+++++.++++.+.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 4555667789999999998 76 5788999999999999999998888889988888777654 47899999999987
Q ss_pred HHHhhhhcCCCccccHHHHHHHhh
Q psy5649 195 SALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
..+..+ ....++.+|+..++.
T Consensus 310 ~~A~~~---~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 310 GIALGE---GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHhhC---CCcEEcHHHHHHHhC
Confidence 655443 335678888888876
No 126
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=7.6e-16 Score=115.77 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=113.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
+.++.++.+.+.||+|+|||||+..+|+-.-+..+.+ +|++.|....
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i--------------------------------~i~g~d~t~~- 66 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI--------------------------------LINGVDHTAS- 66 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE--------------------------------EEcCeecCcC-
Confidence 5678999999999999999999999999887776666 4555444321
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
....+-++.+++.-. +++--++.+++...+.-.-+...+-.-.......|+++ ..++++.|.++|
T Consensus 67 ----~P~~RPVSmlFQEnN----------LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-~~~~~RLP~~LS 131 (231)
T COG3840 67 ----PPAERPVSMLFQENN----------LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGELS 131 (231)
T ss_pred ----CcccCChhhhhhccc----------cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-hhHhhhCccccC
Confidence 122223344443221 22223344444332211002211111122234444554 347889999999
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+|+.|++|.+ +.++++-..+.+|||.+.+|+.-..++...+.++... ..+.++++|..
T Consensus 132 GGqRQRvALA---------RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~ 190 (231)
T COG3840 132 GGQRQRVALA---------RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP 190 (231)
T ss_pred chHHHHHHHH---------HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 9999999999 9999999999999999999999999988888877543 66778888853
No 127
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.8e-12 Score=118.75 Aligned_cols=160 Identities=17% Similarity=0.255 Sum_probs=113.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++.+++.+++. +++++.++ ......++++++.+
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a 111 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERA 111 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHH
Confidence 4467999999999999999999988652 33333221 11223455555554
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.|.. ...+.++..++.. ...+.+|.+||..+.|...+++ |+ ..+.|.
T Consensus 112 ~~~P~~gr~KVIIIDEah~LT~---------~A~NALLKtLEEP---P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk 176 (830)
T PRK07003 112 VYAPVDARFKVYMIDEVHMLTN---------HAFNAMLKTLEEP---PPHVKFILATTDPQKIPVTVLS--RC-LQFNLK 176 (830)
T ss_pred HhccccCCceEEEEeChhhCCH---------HHHHHHHHHHHhc---CCCeEEEEEECChhhccchhhh--he-EEEecC
Confidence 32 2346999999998732 1233455555532 4567788888999999989988 76 788999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+..+.++..+......++.+.++.++....|-. +|...++.++.
T Consensus 177 ~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-RdALsLLdQAi 225 (830)
T PRK07003 177 QMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-RDALSLTDQAI 225 (830)
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 99999999999988888888889999999998887754 44445544444
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.55 E-value=1.1e-12 Score=123.78 Aligned_cols=200 Identities=20% Similarity=0.181 Sum_probs=130.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc---------cccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS---------KFYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
..+..++|+|||||||||+++.+|+.++.+++.++.+.... .+.|.....+.+.+..+....| |++|||+
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEi 425 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEI 425 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEECh
Confidence 45678999999999999999999999999999988765422 1333333444555555444444 7899999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhh------------cccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHH
Q psy5649 82 DVLCTGRNRSDQERRLLSCLVTQVDRL------------HELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRD 149 (305)
Q Consensus 82 d~l~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 149 (305)
|.+...... +. .+.++..++.- .-.-+.+++|+|+|.. .++++++. |+ ..|.+..++.+
T Consensus 426 dk~~~~~~g-~~----~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~e 496 (784)
T PRK10787 426 DKMSSDMRG-DP----ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTED 496 (784)
T ss_pred hhcccccCC-CH----HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHH
Confidence 988654221 11 23344444321 0012678889998887 59999998 88 57999999999
Q ss_pred HHHHHHHHHHhc----------CCCCCCHHhHHHHHHH-cCCCcHHhHHHHHHHHHHHHhhh----hcCCCccccHHHHH
Q psy5649 150 QRAAILHCLLTK----------VPHSLSTDQIQQVAFI-THGFVGGDLATLLSNATSALLVE----TEGTGQVLSYDGVM 214 (305)
Q Consensus 150 ~r~~i~~~~l~~----------~~~~ls~~~~~~la~~-t~g~~~~di~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ 214 (305)
+..+|.+.++.. ....++++.+..++.. |..+=.+.+.+.+++.....+.+ .......++.+++.
T Consensus 497 ek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~ 576 (784)
T PRK10787 497 EKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLH 576 (784)
T ss_pred HHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHH
Confidence 999998877641 1234566667777642 33334566666655544443322 11223457778888
Q ss_pred HHhhhc
Q psy5649 215 RALDHV 220 (305)
Q Consensus 215 ~~l~~~ 220 (305)
+.+..-
T Consensus 577 ~~lg~~ 582 (784)
T PRK10787 577 DYLGVQ 582 (784)
T ss_pred HHhCCC
Confidence 777644
No 129
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.54 E-value=9.1e-15 Score=127.76 Aligned_cols=75 Identities=52% Similarity=0.968 Sum_probs=70.7
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.+...|++++|++.+++.+.+.+.+|+.+++.|..+|+.+|+|++||||||||||++|+++|++++.+|+.+.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 345778999999999999999999999999999999999999999999999999999999999999999998764
No 130
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=9.4e-13 Score=117.55 Aligned_cols=147 Identities=19% Similarity=0.250 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..++|+|||||||||+|+++|+.++. .++.++++.- .....++.+.+.+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~ 109 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAV 109 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHH
Confidence 345899999999999999999998764 3455544321 1122344444443
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. .+.+++|++|+.+..+.+++.+ |+ ..++++
T Consensus 110 ~~~p~~~~~kVvIIDE~h~Lt~---------~a~~~LLk~LE~p---~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~ 174 (472)
T PRK14962 110 GYRPMEGKYKVYIIDEVHMLTK---------EAFNALLKTLEEP---PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFR 174 (472)
T ss_pred hhChhcCCeEEEEEEChHHhHH---------HHHHHHHHHHHhC---CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEEC
Confidence 32 2346999999998731 1234455555532 3456667777777889999988 66 579999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCC
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHG 180 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g 180 (305)
.++..+...+++..+...+..++.+.++.++..+.|
T Consensus 175 ~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 175 NISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 999999999999888777888999999999987655
No 131
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=4.9e-17 Score=140.62 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=106.6
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++.+.|.||||||||||+++||+...+..+.|......-...... . +..-+++.+ ..+++
T Consensus 24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~------------~-r~ig~v~Q~-~~lfp 89 (356)
T PRK11650 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA------------D-RDIAMVFQN-YALYP 89 (356)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH------------H-CCEEEEeCC-ccccC
Confidence 467789999999999999999999999999888777663211100000000 0 000111111 11111
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
. .+..+++...++..+....+..-..-...++++| ..++++.+.++
T Consensus 90 ~---------------------------------~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL-~~~~~~~~~~L 135 (356)
T PRK11650 90 H---------------------------------MSVRENMAYGLKIRGMPKAEIEERVAEAARILEL-EPLLDRKPREL 135 (356)
T ss_pred C---------------------------------CCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCC-hhHhhCChhhC
Confidence 1 1222222222211000000000011122333344 34677888999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 136 SgGq~QRvalA---------RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 136 SGGQRQRVAMG---------RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred CHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999 9999999999999999999999999999999887654 677888888654
No 132
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.54 E-value=1.9e-16 Score=125.95 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|+.
T Consensus 120 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 120 LRERPTHCLSGGEKKRVAIA---------GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 45667789999999999999 999999999999999999999999999999998865566777788864
No 133
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.9e-13 Score=119.13 Aligned_cols=159 Identities=15% Similarity=0.225 Sum_probs=111.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..++|+||+||||||+|+.+|..++.. ++++++.. ......++++.+.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l 113 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNV 113 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHH
Confidence 3458999999999999999999988753 33333211 11123344444433
Q ss_pred H----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 L----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
. .....|++|||+|.+.. .....++..++. ....+++|.+|+.++.+.+.+++ |+ ..+.++
T Consensus 114 ~~~p~~g~~KV~IIDEah~Ls~---------~A~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~ 178 (484)
T PRK14956 114 KFAPMGGKYKVYIIDEVHMLTD---------QSFNALLKTLEE---PPAHIVFILATTEFHKIPETILS--RC-QDFIFK 178 (484)
T ss_pred HhhhhcCCCEEEEEechhhcCH---------HHHHHHHHHhhc---CCCceEEEeecCChhhccHHHHh--hh-heeeec
Confidence 3 23456999999998732 233445555543 34677888889999999999998 76 568898
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.++..+..+.++..+...+..++.+.+..++..+.|- .+|.-.++.++
T Consensus 179 ~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~RdAL~lLeq~ 226 (484)
T PRK14956 179 KVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-VRDMLSFMEQA 226 (484)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-HHHHHHHHHHH
Confidence 8998888888888888778888999999999887775 34444444443
No 134
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.54 E-value=2.5e-17 Score=141.37 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=61.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++++.++|+|+.|+++.+ ++++.++..+++|||++.+|+.+.+.+.+.+.++... +.+.++++|+..
T Consensus 133 ~~~~~~~~LSgGqkQRV~IA---------RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 133 KHDSYPSNLSGGQKQRVAIA---------RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677889999999999999 9999999999999999999999999999999998664 677888888654
No 135
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=1.4e-12 Score=115.70 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=123.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEeccccccc----------c-------cc-hHHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSK----------F-------YG-EAEFRLKAAFDAA 68 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~----------~-------~~-~~~~~l~~~~~~~ 68 (305)
.+.+++|+||+|+|||++++.+++.+ +..+++++|...... . .+ .....+..+.+..
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999999876 467888888643210 0 01 1223333344443
Q ss_pred Hh-CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCc-ceEEEc
Q psy5649 69 LD-HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRL-DQEIEL 143 (305)
Q Consensus 69 ~~-~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~-~~~i~~ 143 (305)
.. ..+.||+|||+|.+..... ...+..++..+.... ..++.+|++++..+ .+++.+.+ ++ ...+.+
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~-----~~~l~~l~~~~~~~~--~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f 204 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG-----NDVLYSLLRAHEEYP--GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYF 204 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC-----chHHHHHHHhhhccC--CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeec
Confidence 33 3467999999999872211 123444444433322 23677778777653 35555555 44 357899
Q ss_pred cCCCHHHHHHHHHHHHhcC--CCCCCHHhHHHHHHHcCCCc--HHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 144 PVPSRDQRAAILHCLLTKV--PHSLSTDQIQQVAFITHGFV--GGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~--~~~ls~~~~~~la~~t~g~~--~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
++++..+..++++..+... ...++.+.++.++..+.+.+ .+.+..++..|...+..+ +...++.+++..++..
T Consensus 205 ~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~---~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 205 PPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE---GSRKVTEEDVRKAYEK 281 (394)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHH
Confidence 9999999999998776532 33567778888887764321 233334555554444332 3456778888888877
Q ss_pred cCC
Q psy5649 220 VKP 222 (305)
Q Consensus 220 ~~~ 222 (305)
...
T Consensus 282 ~~~ 284 (394)
T PRK00411 282 SEI 284 (394)
T ss_pred HHH
Confidence 643
No 136
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.54 E-value=8.9e-13 Score=115.76 Aligned_cols=199 Identities=22% Similarity=0.263 Sum_probs=120.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC---------CeEEEEecccccccc-------------------cc-hHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK---------VHTVVIQVADMFSKF-------------------YG-EAEFRL 61 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~---------~~~~~v~~~~~~~~~-------------------~~-~~~~~l 61 (305)
..+.+++|+||+|||||++++.+++.+. ..+++++|....... .+ .....+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 3456799999999999999999987653 567888886543210 00 112234
Q ss_pred HHHHHHHHh-CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCc
Q psy5649 62 KAAFDAALD-HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRL 137 (305)
Q Consensus 62 ~~~~~~~~~-~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~ 137 (305)
..+++.... ..+.|++|||+|.+.... . ..+..+............++.+|+++|.++ .+++.+.+ ||
T Consensus 118 ~~l~~~l~~~~~~~vlvIDE~d~L~~~~-~-----~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~ 189 (365)
T TIGR02928 118 RRLYKELNERGDSLIIVLDEIDYLVGDD-D-----DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SL 189 (365)
T ss_pred HHHHHHHHhcCCeEEEEECchhhhccCC-c-----HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cC
Confidence 445554443 456799999999987221 1 122233222111111136778888888764 46666655 55
Q ss_pred c-eEEEccCCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHH---HcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHH
Q psy5649 138 D-QEIELPVPSRDQRAAILHCLLTK--VPHSLSTDQIQQVAF---ITHGFVGGDLATLLSNATSALLVETEGTGQVLSYD 211 (305)
Q Consensus 138 ~-~~i~~~~p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~---~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~ 211 (305)
. ..+.+++++..+..+|++..++. .+..++.+.++.++. .+.|..... ..++..+...+..+ +...++.+
T Consensus 190 ~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a-l~~l~~a~~~a~~~---~~~~it~~ 265 (365)
T TIGR02928 190 CEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA-IDLLRVAGEIAERE---GAERVTED 265 (365)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHc---CCCCCCHH
Confidence 3 67999999999999999877652 233456655555443 334543332 33555555444332 33457778
Q ss_pred HHHHHhhhcC
Q psy5649 212 GVMRALDHVK 221 (305)
Q Consensus 212 ~~~~~l~~~~ 221 (305)
++..++....
T Consensus 266 ~v~~a~~~~~ 275 (365)
T TIGR02928 266 HVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 137
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.5e-13 Score=121.06 Aligned_cols=205 Identities=21% Similarity=0.270 Sum_probs=140.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc---------cccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS---------KFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++.-++|+||||+|||+|++.||..++..|+.++...+-. .|.|....++-+.+..+....| +++|||+|
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEID 427 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEID 427 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechh
Confidence 4567889999999999999999999999999998766532 3677778888888888888888 66899999
Q ss_pred cccCCCCCchhHHHHHHHHHH-----HHhhhcc---cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHH
Q psy5649 83 VLCTGRNRSDQERRLLSCLVT-----QVDRLHE---LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAI 154 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~-----~~~~~~~---~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 154 (305)
.+..+... ++....+..|-. +.+.+-+ .-+.|++|+|+|..+.++..|.. |+ +.|++.-.+..+.++|
T Consensus 428 Km~ss~rG-DPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~I 503 (782)
T COG0466 428 KMGSSFRG-DPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEI 503 (782)
T ss_pred hccCCCCC-ChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHH
Confidence 98655322 333333322211 1111111 13779999999999999999987 77 7899999999999999
Q ss_pred HHHHHhc-----C-----CCCCCHHhHHHHHHH---cCCC--cHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 155 LHCLLTK-----V-----PHSLSTDQIQQVAFI---THGF--VGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 155 ~~~~l~~-----~-----~~~ls~~~~~~la~~---t~g~--~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
.+.++=. . ...++++.+..+... -.|. --+.|..+++.+...++.........+..+++.+.+..
T Consensus 504 Ak~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 504 AKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCC
Confidence 8765422 1 122344444443322 0121 13567778888877766543333345666777777765
Q ss_pred cC
Q psy5649 220 VK 221 (305)
Q Consensus 220 ~~ 221 (305)
..
T Consensus 584 ~~ 585 (782)
T COG0466 584 PV 585 (782)
T ss_pred cc
Confidence 43
No 138
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=121.05 Aligned_cols=192 Identities=18% Similarity=0.254 Sum_probs=118.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHH-HHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAE-FRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
.+.++||||+|||||+|++++++++ +..++++++.++......... ..+.. |.......+.+|+|||++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999875 356788887665433222111 11112 2222223578999999998753
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC---CccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV---DVSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l---~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
... .. ..++..+....+ .+..+++.+...+.++ .+.+.+ || ...++++.|+.+.|..|++..+..
T Consensus 209 ~~~---~q----~elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 209 KTG---VQ----TELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred cHH---HH----HHHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 311 11 123333333333 2334445444555554 445555 55 357899999999999999988887
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
....++.+.++.++....| +.++|..++.+....... ....++.+...++++.+
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~----~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKET----TGEEVDLKEAILLLKDF 332 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHH
Confidence 7888999999999977554 555566665554433321 11234555555555543
No 139
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.6e-16 Score=121.35 Aligned_cols=175 Identities=15% Similarity=0.159 Sum_probs=116.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccccc-ccchHHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK-FYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
+|....|+.+.|.||||+||||++|.||..+.+..+.+....+... ++....+.+ +|++ +|.-. .
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~I------------GVl~-~e~gl-Y 87 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI------------GVLF-GERGL-Y 87 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhc------------ceec-CCcCh-h
Confidence 3667889999999999999999999999999988777644333211 111111111 1222 22110 0
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
.+- ..++.+. ++..+.. ....+++.+..+..+++++.+ ++++....
T Consensus 88 -~Rl---T~rEnl~-~Fa~L~~----------------------------l~~~~~kari~~l~k~l~l~~-~~~rRv~~ 133 (245)
T COG4555 88 -ARL---TARENLK-YFARLNG----------------------------LSRKEIKARIAELSKRLQLLE-YLDRRVGE 133 (245)
T ss_pred -hhh---hHHHHHH-HHHHHhh----------------------------hhhhHHHHHHHHHHHHhChHH-HHHHHHhh
Confidence 000 0011111 1111111 111223333445567777665 77888889
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
+|.|..|+++.+ ++++.+|..+++|||++++|..+...+.+.+.+.+..+...+..+|.+....
T Consensus 134 ~S~G~kqkV~iA---------RAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eve 197 (245)
T COG4555 134 FSTGMKQKVAIA---------RALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVE 197 (245)
T ss_pred hchhhHHHHHHH---------HHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHH
Confidence 999999999999 9999999999999999999999999999999999988888888888654443
No 140
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.2e-16 Score=137.80 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||.+++|....+.+.+.+.++... +.+.++++|+..
T Consensus 129 ~~~r~~~~LSgGq~QRVaLA---------RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 129 FEDRYVDQISGGQQQRVALA---------RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56778899999999999999 9999999999999999999999999999999888654 567788888654
No 141
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.3e-16 Score=135.34 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=61.7
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+.++.+..+|+|+.++++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+..
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA---------~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 226 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALA---------GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH
Confidence 356677889999999999999 9999999999999999999999999999999988755677888888754
No 142
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.52 E-value=1.1e-16 Score=129.95 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=59.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 129 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~ 197 (214)
T cd03292 129 KHRALPAELSGGEQQRVAIA---------RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE 197 (214)
T ss_pred HhhCChhhcCHHHHHHHHHH---------HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45566778999999999999 9999999999999999999999999999999988655667778888643
No 143
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.3e-12 Score=117.04 Aligned_cols=162 Identities=17% Similarity=0.314 Sum_probs=117.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe----------------------------EEEEecccccccccchHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH----------------------------TVVIQVADMFSKFYGEAEFRLKAA 64 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~----------------------------~~~v~~~~~~~~~~~~~~~~l~~~ 64 (305)
+..+||+||+||||||+|+++|+.+++. ++++++. .......++.+
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~i 116 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRI 116 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHH
Confidence 4579999999999999999999988653 2222221 11234566677
Q ss_pred HHHHHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceE
Q psy5649 65 FDAALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQE 140 (305)
Q Consensus 65 ~~~~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~ 140 (305)
++.+... ...|++|||+|.+.. .....++..++. ....+++|.+|+..+.+.+.+++ |. ..
T Consensus 117 ie~a~~~P~~~~~KVvIIDEa~~Ls~---------~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~S--Rc-~~ 181 (507)
T PRK06645 117 IESAEYKPLQGKHKIFIIDEVHMLSK---------GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIIS--RC-QR 181 (507)
T ss_pred HHHHHhccccCCcEEEEEEChhhcCH---------HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHh--cc-eE
Confidence 7666532 345999999997731 223445555553 24556667777888888888887 65 57
Q ss_pred EEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHH
Q psy5649 141 IELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSA 196 (305)
Q Consensus 141 i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~ 196 (305)
++++.++..+...+++..+++.+...+.+.++.++..+.| +.+++..++.++..+
T Consensus 182 ~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 182 YDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 8899999999999999888888888888889999988776 677777777776543
No 144
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.52 E-value=2.3e-12 Score=111.88 Aligned_cols=182 Identities=20% Similarity=0.294 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcC-----CeEEEEeccccccccc-------------ch-------HHHHHHHHHHHH
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMK-----VHTVVIQVADMFSKFY-------------GE-------AEFRLKAAFDAA 68 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~-----~~~~~v~~~~~~~~~~-------------~~-------~~~~l~~~~~~~ 68 (305)
.+++|+||+||||||+++++++++. .++..++++++..... +. ....++.+....
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 3799999999999999999999874 3456777766432210 00 122333333333
Q ss_pred Hh-----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 69 LD-----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 69 ~~-----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
.. ..+.+++|||+|.+.. . ....+...++... ....+|.+++.+..+.+.+++ |+ ..+++
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~------~---~~~~L~~~le~~~---~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~ 181 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALRE------D---AQQALRRIMEQYS---RTCRFIIATRQPSKLIPPIRS--RC-LPLFF 181 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCH------H---HHHHHHHHHHhcc---CCCeEEEEeCChhhCchhhcC--Cc-eEEEe
Confidence 32 2345999999987631 1 1223344444322 223345566666666677776 54 57899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
++|+..+...+++..+.+.+..++.+.++.++..+ ++|++.++......+.. ...++.+++.+++..
T Consensus 182 ~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~~~~~~-----~~~It~~~v~~~~~~ 248 (337)
T PRK12402 182 RAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQTAALA-----AGEITMEAAYEALGD 248 (337)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHhCC
Confidence 99999999999998888888889999999999776 34555555544433321 114566666665554
No 145
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.3e-12 Score=112.40 Aligned_cols=160 Identities=19% Similarity=0.311 Sum_probs=110.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..++|+||+|+||||+++++|..+... ++++++++ ......++.+.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~ 111 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNI 111 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHH
Confidence 4457999999999999999999988632 22222211 01223455555554
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. ...+.+|.+|+..+.+.+.+++ |+ ..++++
T Consensus 112 ~~~p~~~~~kviIIDEa~~l~~---------~a~naLLk~lEe~---~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~ 176 (363)
T PRK14961 112 YYSPSKSRFKVYLIDEVHMLSR---------HSFNALLKTLEEP---PQHIKFILATTDVEKIPKTILS--RC-LQFKLK 176 (363)
T ss_pred hcCcccCCceEEEEEChhhcCH---------HHHHHHHHHHhcC---CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCC
Confidence 32 2345999999997631 1223455555532 3445566677777888888877 66 678999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+..+++...++..+..++.+.++.++..+.| +++++..++..+.
T Consensus 177 ~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 177 IISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999998888887888888889999988766 5566666665543
No 146
>KOG0651|consensus
Probab=99.51 E-value=1.8e-14 Score=117.07 Aligned_cols=70 Identities=44% Similarity=0.893 Sum_probs=67.3
Q ss_pred CCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 234 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
...++.+||...+...+.+.+..|+..+.+|.++|+++|.|++||||||+|||.+|+++|...|.||+.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v 197 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKV 197 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEe
Confidence 3578999999999999999999999999999999999999999999999999999999999999999976
No 147
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=5.5e-16 Score=130.99 Aligned_cols=69 Identities=22% Similarity=0.192 Sum_probs=60.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|++++++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+..
T Consensus 137 ~~~~~~~~LSgGqkqrvaiA---------~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~ 205 (288)
T PRK13643 137 FWEKSPFELSGGQMRRVAIA---------GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD 205 (288)
T ss_pred hccCCcccCCHHHHHHHHHH---------HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 44667788999999999999 9999999999999999999999999999999988655677888888654
No 148
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.51 E-value=2.2e-16 Score=137.17 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=61.6
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.++++.+.++|+|+.|+++.+ ++++.++..+++|||.+++|....+.+.+.+.++... +.+.++++|+..
T Consensus 136 ~~~~~~p~~LSgGq~QRVaLA---------RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 136 EFAQRKPHQLSGGQQQRVAIA---------RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred hhhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 356778889999999999999 9999999999999999999999999999999988654 667788888654
No 149
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.50 E-value=1.8e-16 Score=137.25 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=61.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc--hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS--AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||.+++|....+.+.+.+.++... +.+.++++|+..
T Consensus 130 ~~~~~~~~LSgGq~QRvaLA---------RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ 200 (362)
T TIGR03258 130 AAAHLPAQLSGGMQQRIAIA---------RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD 200 (362)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence 56778889999999999999 9999999999999999999999999999999988665 567788888654
No 150
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.50 E-value=1.6e-16 Score=128.84 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+++....+.+.++++|....
T Consensus 130 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 199 (214)
T TIGR02673 130 KADAFPEQLSGGEQQRVAIA---------RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199 (214)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 34556678999999999999 99999999999999999999999999999999876556677788886543
No 151
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.50 E-value=7.3e-13 Score=117.61 Aligned_cols=194 Identities=13% Similarity=0.199 Sum_probs=115.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
+.++|+||+|+|||+|++++++++ +..+.++++.++...........-...|.... ....+|+|||++.+.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 579999999999999999999876 56777787655432211111110111233222 3566999999998643221
Q ss_pred chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 91 SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
... .++..++.... .+..+++.+++.+. .+++.+++ ||. ..++++.|+.++|..|++..++..+..
T Consensus 220 ---~qe---elf~l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~ 290 (445)
T PRK12422 220 ---TQE---EFFHTFNSLHT-EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIR 290 (445)
T ss_pred ---hHH---HHHHHHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 111 22233332222 23334444444444 45667777 775 788999999999999999888888888
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
++.+.++.++....+ +.+++...+............ ...+++.+.+.+++..+
T Consensus 291 l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 291 IEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-SHQLLYVDDIKALLHDV 343 (445)
T ss_pred CCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHHHh
Confidence 999888888876443 333444444433211111111 12345666666666544
No 152
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=2.2e-14 Score=113.81 Aligned_cols=68 Identities=44% Similarity=0.749 Sum_probs=60.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
++..++|+.|+++.|+...-++. .+++|+.|..| .|+.+|||||||||||++|+++|++.+.+|+.||
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vk 183 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIME-YLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK 183 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHH-HhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEec
Confidence 56789999999999988776655 57788888876 6889999999999999999999999999999997
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=2e-12 Score=119.37 Aligned_cols=193 Identities=20% Similarity=0.237 Sum_probs=122.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccccc-----------------cchHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSKF-----------------YGEAEFRLKAAF 65 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~~-----------------~~~~~~~l~~~~ 65 (305)
+..++|+|+||||||+.++.+.+++ ...+++|+|..+.... .......+..+|
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 3345699999999999999998765 2567889985432111 112234566667
Q ss_pred HHHHh--CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC---CCCCCccccCCCCcc-e
Q psy5649 66 DAALD--HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS---LDNVDVSLRTPGRLD-Q 139 (305)
Q Consensus 66 ~~~~~--~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~---~~~l~~~l~~~~r~~-~ 139 (305)
..... ....||+|||+|.|.... ...+-.++.+.. .....+.+|+++|. ++.+++.+++ |+. .
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~------QDVLYnLFR~~~---~s~SKLiLIGISNdlDLperLdPRLRS--RLg~e 929 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKT------QKVLFTLFDWPT---KINSKLVLIAISNTMDLPERLIPRCRS--RLAFG 929 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccH------HHHHHHHHHHhh---ccCCeEEEEEecCchhcchhhhhhhhh--ccccc
Confidence 66532 335699999999987531 223333333322 23567888998886 4455666666 553 3
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 140 EIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 140 ~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
++.|++++..+..+|++..+......++++.++.+|.... ...+|++.++.-.....-. .....++.+++.+|+..
T Consensus 930 eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDARKALDILRrAgEi---kegskVT~eHVrkAlee 1005 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIRKALQICRKAFEN---KRGQKIVPRDITEATNQ 1005 (1164)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHH
Confidence 5889999999999999987775445678888888886322 2345666554433222211 12335667777777765
Q ss_pred c
Q psy5649 220 V 220 (305)
Q Consensus 220 ~ 220 (305)
+
T Consensus 1006 i 1006 (1164)
T PTZ00112 1006 L 1006 (1164)
T ss_pred H
Confidence 5
No 154
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.50 E-value=2.5e-16 Score=136.11 Aligned_cols=172 Identities=19% Similarity=0.152 Sum_probs=105.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+++.+.|.||||||||||+++||+...+..+.|....-.-..... ..+...+++.+ ..+++
T Consensus 24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~-------------~~r~ig~v~Q~-~~lfp 89 (353)
T TIGR03265 24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP-------------QKRDYGIVFQS-YALFP 89 (353)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH-------------HHCCEEEEeCC-cccCC
Confidence 46778999999999999999999999999988877766332110000000 00111112222 12222
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
.. +..+++...++..+.-..+..-..-...++++| ..++++.+.++
T Consensus 90 ~~---------------------------------tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L-~~~~~~~~~~L 135 (353)
T TIGR03265 90 NL---------------------------------TVADNIAYGLKNRGMGRAEVAERVAELLDLVGL-PGSERKYPGQL 135 (353)
T ss_pred CC---------------------------------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-CchhhCChhhC
Confidence 11 111222111111000000000001112222332 23566788899
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
|+|+.|+++.+ ++++.++..+++|||.+++|....+.+.+.+.++... +.+.++++|+..
T Consensus 136 SgGq~QRvaLA---------RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 136 SGGQQQRVALA---------RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred CHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 99999999999 9999999999999999999999999999999887654 667788888654
No 155
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.50 E-value=7.4e-16 Score=136.13 Aligned_cols=76 Identities=21% Similarity=0.199 Sum_probs=67.2
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
..+++++++++|+|+.|++|++ ++|+.+|..+++|||.+.+|+.....+.+.+.+++.. +.+.++++|+.
T Consensus 420 ~~~l~ryP~elSGGQrQRvaIA---------RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 420 PEFLDRYPHELSGGQRQRVAIA---------RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred HHHHhcCchhcCcchhHHHHHH---------HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 4578899999999999999999 9999999999999999999999999999999998766 67778899987
Q ss_pred CCcccc
Q psy5649 235 VKWSDI 240 (305)
Q Consensus 235 ~~~~~i 240 (305)
.....+
T Consensus 491 ~vV~~i 496 (539)
T COG1123 491 AVVRYI 496 (539)
T ss_pred HHHHhh
Confidence 554443
No 156
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.2e-12 Score=116.85 Aligned_cols=160 Identities=21% Similarity=0.258 Sum_probs=113.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+|+++|+.+++ +++++++++- .....++.+.+.+
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~ 110 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNV 110 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 457899999999999999999998865 3344433221 1233455555544
Q ss_pred H----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 L----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
. .....|++|||+|.+.. .....++..++.. ...+.+|.+|+.+..+...+++ |+ ..+++.
T Consensus 111 ~y~P~~gk~KV~IIDEVh~LS~---------~A~NALLKtLEEP---P~~v~FILaTtd~~kIp~TIlS--RC-q~feFk 175 (702)
T PRK14960 111 PYAPTQGRFKVYLIDEVHMLST---------HSFNALLKTLEEP---PEHVKFLFATTDPQKLPITVIS--RC-LQFTLR 175 (702)
T ss_pred hhhhhcCCcEEEEEechHhcCH---------HHHHHHHHHHhcC---CCCcEEEEEECChHhhhHHHHH--hh-heeecc
Confidence 3 23456999999998732 1234455555542 3455677777888888877776 66 678999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+....+...+++.....+.+.+..++..+.| +.+++.+++.++.
T Consensus 176 pLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999998888888888999999999988766 5566566655443
No 157
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.49 E-value=4.6e-16 Score=132.42 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..++....+|+|+.++++.+ ++++.++..+++|||++++|+.+...+.+.+.++...+.+.++++|....
T Consensus 117 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 117 AADRPVGTYSGGMRRRLDIA---------ASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186 (302)
T ss_pred HhCCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 45566778999999999999 99999999999999999999999999999999987666777888886543
No 158
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.49 E-value=2.5e-12 Score=105.36 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC---CeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
..+..++|+||+|||||+|+++++++.. ....+++...... ...++++... +..+|+|||++.+..+
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~--~~dlliiDdi~~~~~~ 112 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGME--QLSLVCIDNIECIAGD 112 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhh--hCCEEEEeChhhhcCC
Confidence 3446899999999999999999998653 3345554433211 1112222221 1248999999976432
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCC---CCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN---VDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKV 162 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~ 162 (305)
. .... .++..+....+.+...+++.+++.+.+ +.+.+++ |+. ..+++..|+.+++.++++......
T Consensus 113 ~----~~~~---~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 113 E----LWEM---AIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred H----HHHH---HHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 1 1111 233333333332232344555555555 4677777 664 788999999999999998766767
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
...++++.++.++...+| +.+.+..++..
T Consensus 184 ~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 184 GFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred CCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 788999999999977544 33334444444
No 159
>PRK10908 cell division protein FtsE; Provisional
Probab=99.49 E-value=3.9e-16 Score=127.30 Aligned_cols=69 Identities=14% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++.+|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 130 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 130 KAKNFPIQLSGGEQQRVGIA---------RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred hhhCCchhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 44566788999999999999 9999999999999999999999999999999988655667778888644
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.49 E-value=5.5e-16 Score=125.46 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 127 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 127 LRDRSPFTLSGGQKQRVAIA---------GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999988655667778888643
No 161
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=1.3e-12 Score=118.18 Aligned_cols=159 Identities=17% Similarity=0.254 Sum_probs=110.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC-----------------------------eEEEEecccccccccchHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV-----------------------------HTVVIQVADMFSKFYGEAEFRLKA 63 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~-----------------------------~~~~v~~~~~~~~~~~~~~~~l~~ 63 (305)
+..+||+||+|+||||+++.+++.+++ ++++++..+ ......+++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIRe 111 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQ 111 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHH
Confidence 446799999999999999999998876 222332221 112334555
Q ss_pred HHHHHH----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcce
Q psy5649 64 AFDAAL----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQ 139 (305)
Q Consensus 64 ~~~~~~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~ 139 (305)
+.+.+. .....|++|||+|.+.. ...+.|+..++. ....+.+|.+|+....|.+.+++ |+ .
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~Ls~---------~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrS--RC-q 176 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHMLTN---------HAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLS--RC-L 176 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHhcCH---------HHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHH--HH-H
Confidence 555443 23456999999998732 223345555553 34567788888999999999988 66 7
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 140 EIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 140 ~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.+.++.++..+..+.++..+.......+.+.++.++..++|- .++...++.++
T Consensus 177 ~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs-~RdALsLLdQa 229 (700)
T PRK12323 177 QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGS-MRDALSLTDQA 229 (700)
T ss_pred hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 789999999999998888887777778887788888776664 44445555443
No 162
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=6.1e-16 Score=130.17 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=60.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+.
T Consensus 133 ~~~~~~~~LSgGq~qrv~lA---------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 133 FKEREPARLSGGQKQRVAIA---------GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 56677889999999999999 9999999999999999999999999999999988654 67777888864
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=2e-12 Score=116.95 Aligned_cols=191 Identities=17% Similarity=0.232 Sum_probs=120.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
+.++|||++|||||+|++++++++ +..+.++++.++...+...........|... -....+|+|||++.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 458999999999999999999976 4577888887765444333222222223322 2346799999999875332
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 89 NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
. .. ..|+..++...+.+.. ++|.+...+. .+++.|++ || ...+++..|+.+.|..|++.......
T Consensus 394 ~----tq---eeLF~l~N~l~e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~ 463 (617)
T PRK14086 394 S----TQ---EEFFHTFNTLHNANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ 463 (617)
T ss_pred H----HH---HHHHHHHHHHHhcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC
Confidence 1 11 2334444444432333 3343333333 45667777 66 45679999999999999999888888
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
..++.+.++.|+....+ +.++|..++.+....+... ...++.+.+.++++.+
T Consensus 464 l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~----~~~itl~la~~vL~~~ 515 (617)
T PRK14086 464 LNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN----RQPVDLGLTEIVLRDL 515 (617)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh----CCCCCHHHHHHHHHHh
Confidence 99999999999877443 4566666666554333221 1234444444444443
No 164
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=3.5e-15 Score=120.30 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=104.9
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
+|.+++++.+.|+|++||||||++|.+.+...+..+.| ++++-|...-
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i--------------------------------~f~g~~i~~~ 80 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI--------------------------------LFEGKDITKL 80 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE--------------------------------EEcCcchhhc
Confidence 57889999999999999999999999999998887777 4444332110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+ ...... .+.+..+++++-..++.++++++
T Consensus 81 ~------~~~~~~--------------------------------------------~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 81 S------KEERRE--------------------------------------------RVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred c------hhHHHH--------------------------------------------HHHHHHHHhCCCHHHhhcCCccc
Confidence 0 000000 01122344444456788999999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
|+||+|+++++ ++++.++...++|||.+.+|...+..+.+.+.+++.. +.+.+.++|+..
T Consensus 111 SGGQrQRi~IA---------RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 111 SGGQRQRIGIA---------RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred CchhhhhHHHH---------HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 99999999999 9999999999999999999999999999999888765 666677777543
No 165
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.48 E-value=2.1e-14 Score=113.03 Aligned_cols=140 Identities=22% Similarity=0.218 Sum_probs=99.0
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+++.++|.||||+|||||++.+++...+.-+.| .+++.+.-
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v--------------------------------~~~g~~~~-- 64 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI--------------------------------LLDGKDLA-- 64 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE--------------------------------EECCEECC--
Confidence 46678999999999999999999999999877665555 34443221
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
.. ........+ .++.+ ..++.++-. ..++.+..+
T Consensus 65 ~~-~~~~~~~~i----~~~~q----------------------------------------~l~~~gl~~-~~~~~~~~L 98 (180)
T cd03214 65 SL-SPKELARKI----AYVPQ----------------------------------------ALELLGLAH-LADRPFNEL 98 (180)
T ss_pred cC-CHHHHHHHH----hHHHH----------------------------------------HHHHcCCHh-HhcCCcccC
Confidence 00 000001111 11111 233333322 344567789
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
|+++.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+++.. +.+.++++|...
T Consensus 99 S~G~~qrl~la---------ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 99 SGGERQRVLLA---------RALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999 9999999999999999999999999999999988654 556777888643
No 166
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.48 E-value=6.7e-16 Score=129.59 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++....+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+..
T Consensus 129 ~~~~~~~~LSgG~~qrl~la---------raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 129 FRHQPIQCLSHGQKKRVAIA---------GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred HhcCCchhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 44566778999999999999 9999999999999999999999999999999988655566777888654
No 167
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.48 E-value=8.2e-16 Score=125.06 Aligned_cols=68 Identities=25% Similarity=0.230 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 234 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|+...+.+.+.+.++.. .+.+.++++|+.
T Consensus 133 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 133 RLNHYPSELSGGQQQRVAIA---------RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred hhhcChhhcCHHHHHHHHHH---------HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 34566778999999999999 999999999999999999999999999999998865 366777888864
No 168
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.47 E-value=8.1e-16 Score=123.99 Aligned_cols=68 Identities=21% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..++...++|+|+.++++.+ ++++.++..+++|||++..|..+.+.+.+.+++....+.+.++++|+.
T Consensus 127 ~~~~~~~~lS~G~~qr~~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 127 KLKQKIYELSGGEQQRVALA---------RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45666788999999999999 999999999999999999999999999999998865566777788864
No 169
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=3.2e-15 Score=121.86 Aligned_cols=177 Identities=20% Similarity=0.202 Sum_probs=120.6
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.++.|+...|.|-+|||||||+|++.+...+..+++ ++|+-|..--
T Consensus 48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~i--------------------------------lv~g~di~~~ 95 (386)
T COG4175 48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEI--------------------------------LVDGKDIAKL 95 (386)
T ss_pred eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceE--------------------------------EECCcchhcC
Confidence 57788999999999999999999999999888777666 5666554432
Q ss_pred CCCCc-hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRS-DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
+.... +..++.++..++.+-. +.--|+.++..+.++-.|....+=+-......+.+++ ..+.++++.+
T Consensus 96 ~~~~Lr~~Rr~~~sMVFQ~FaL----------lPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL-~~~~~~yp~e 164 (386)
T COG4175 96 SAAELRELRRKKISMVFQSFAL----------LPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL-EGYADKYPNE 164 (386)
T ss_pred CHHHHHHHHhhhhhhhhhhhcc----------ccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc-hhhhhcCccc
Confidence 22111 2223344444444332 2233666777776665443321111111122222222 3366788999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
||+|..|++..+ +++..++..+++||+.+.+|++-..++.+.+-+++.. ..+.+.++|+..
T Consensus 165 LSGGMqQRVGLA---------RAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 165 LSGGMQQRVGLA---------RALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred ccchHHHHHHHH---------HHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 999999999999 9999999999999999999999998888877777655 445667888654
No 170
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.47 E-value=5.5e-16 Score=126.07 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 129 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 197 (218)
T cd03266 129 LLDRRVGGFSTGMRQKVAIA---------RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197 (218)
T ss_pred HHhhhhhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45566778999999999999 9999999999999999999999999999999988655667788888654
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.47 E-value=6.6e-14 Score=127.04 Aligned_cols=74 Identities=45% Similarity=0.822 Sum_probs=68.3
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.+...|+|++|+++++..+.+.+.+ +++++.|.+.|..+|+|+|||||||||||++|+++|++++.+|+.++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 445678999999999999999998886 78899999999999999999999999999999999999999999875
No 172
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=8e-16 Score=125.26 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|++++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+...+ +.+.++++|+..
T Consensus 124 ~~~~~~~~LS~G~~qr~~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 124 AADRLVKTYSGGMRRRLEIA---------RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45666788999999999999 9999999999999999999999999999999988655 567778888643
No 173
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.47 E-value=4.3e-16 Score=134.49 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+.++.+.++|+|+.|+++.+ ++++.++..+++|||++.+|+.+.+.+.+.+.++... +.+.++++|+..
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lA---------RAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLA---------RALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 356778889999999999999 9999999999999999999999999999999888644 667788888654
No 174
>PLN03025 replication factor C subunit; Provisional
Probab=99.47 E-value=2.6e-12 Score=110.31 Aligned_cols=160 Identities=15% Similarity=0.222 Sum_probs=105.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcC-----CeEEEEecccccccccchHHHHHHHHHHHHH---hCCCeEEEEccccccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMK-----VHTVVIQVADMFSKFYGEAEFRLKAAFDAAL---DHAPSLLLLDNLDVLC 85 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~vl~ide~d~l~ 85 (305)
.+++|+|||||||||+++++|+++. ..+.+++.++..+. ......++..-+... .....+++|||+|.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~--~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt 112 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGI--DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT 112 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccH--HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC
Confidence 4699999999999999999999872 23556666543211 112222222111110 1235699999999874
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
.. . ...+...++.. .....++.++|....+.+.+++ |. ..++++.|+..+....++..+++.+..
T Consensus 113 ~~------a---q~aL~~~lE~~---~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 113 SG------A---QQALRRTMEIY---SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred HH------H---HHHHHHHHhcc---cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 21 1 12234444432 2233456677888888888887 55 578999999999999999888888889
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
++.+.++.++....| |++.++..-+
T Consensus 178 i~~~~l~~i~~~~~g----DlR~aln~Lq 202 (319)
T PLN03025 178 YVPEGLEAIIFTADG----DMRQALNNLQ 202 (319)
T ss_pred CCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 999999999877554 5544444443
No 175
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.47 E-value=2.8e-16 Score=134.76 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=61.9
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..+++++.++|+|+.|+++.+ ++++.++..+++|||++.+|..+...+.+.+.+++.. +.+.++++|+..
T Consensus 153 ~~~~~~p~~LSgG~~QRv~iA---------rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~ 223 (331)
T PRK15079 153 NLINRYPHEFSGGQCQRIGIA---------RALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA 223 (331)
T ss_pred HHhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 356788899999999999999 9999999999999999999999999999999988654 667788888654
No 176
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.46 E-value=3.7e-12 Score=109.54 Aligned_cols=161 Identities=14% Similarity=0.231 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH-hCCCeEEEEcccccccCCCCCc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL-DHAPSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vl~ide~d~l~~~~~~~ 91 (305)
+..++|+||+|+|||+++++++++++.++.++++++ .. .......+........ ...+.+++|||+|.+..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----- 114 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----- 114 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----
Confidence 345666999999999999999999999999998876 22 2222222333222221 13567999999987621
Q ss_pred hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh-------cCCC
Q psy5649 92 DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT-------KVPH 164 (305)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~-------~~~~ 164 (305)
.... ..+...++.. ...+.+|.+++....+.+.+++ |+ ..+.++.|+..++..+++.+++ ..+.
T Consensus 115 ~~~~---~~L~~~le~~---~~~~~~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~ 185 (316)
T PHA02544 115 ADAQ---RHLRSFMEAY---SKNCSFIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGV 185 (316)
T ss_pred HHHH---HHHHHHHHhc---CCCceEEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 2233334432 3445677888988889999988 77 5789999999999877654333 3456
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++.+.+..++....| |++.++....
T Consensus 186 ~i~~~al~~l~~~~~~----d~r~~l~~l~ 211 (316)
T PHA02544 186 EVDMKVLAALVKKNFP----DFRRTINELQ 211 (316)
T ss_pred CCCHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 6777777777765443 4454444333
No 177
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.46 E-value=3.6e-16 Score=136.19 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=60.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 126 ~~~~~~~~LSgGq~QRvaLA---------raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~ 195 (369)
T PRK11000 126 LLDRKPKALSGGQRQRVAIG---------RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (369)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence 55677889999999999999 9999999999999999999999999999999887654 567788888654
No 178
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=7.1e-12 Score=118.42 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=107.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCe--------------------------EEEEecccccccccchHHHHHHHHHHH
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVH--------------------------TVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~--------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
..+||+||+||||||++++||+.+.+. +++++..+. .....++++.+.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~ 111 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRER 111 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHH
Confidence 458999999999999999999998652 222222111 112233333332
Q ss_pred H----HhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 A----LDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~----~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+ ......|++|||+|.|.. ...+.|+..++.. ...+++|.+|+..+.|...+++ |. ..++|
T Consensus 112 ~~~~p~~~~~KV~IIDEad~lt~---------~a~NaLLK~LEEp---P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F 176 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAHMVTP---------QGFNALLKIVEEP---PEHLKFIFATTEPDKVIGTIRS--RT-HHYPF 176 (824)
T ss_pred HHhchhcCCceEEEEechhhcCH---------HHHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHh--he-eEEEe
Confidence 2 234456999999998742 2344566666653 3456667777877888888887 55 67899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
..++..+...++...+++....++.+.+..++....| +.+++..++.+
T Consensus 177 ~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 177 RLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred eCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 9999999999888888887888888888888877665 55555555554
No 179
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=8.6e-16 Score=128.95 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+..
T Consensus 131 ~~~~~~~~LSgG~~qrv~la---------raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~ 199 (274)
T PRK13647 131 FRDKPPYHLSYGQKKRVAIA---------GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 (274)
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 55667889999999999999 9999999999999999999999999999999988655677788888654
No 180
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.46 E-value=4e-16 Score=135.78 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.|+++.+ ++++.++..+++|||.+++|....+.+.+.+.++... +.+.++++|+..
T Consensus 142 ~~~~~~~~LSgGq~QRVaLA---------RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 211 (377)
T PRK11607 142 FAKRKPHQLSGGQRQRVALA---------RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE 211 (377)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 56777889999999999999 9999999999999999999999999998887776433 567778888654
No 181
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=5.2e-16 Score=127.64 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.|+++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+.... +.+.++++|+..
T Consensus 129 ~~~~~~~~LSgG~~qrv~ia---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 129 AEDLYPAELSGGMKKRVALA---------RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 34556678999999999999 9999999999999999999999999999999988653 567778888643
No 182
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.46 E-value=4e-16 Score=128.22 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|......+.+.+.+.... +.+.++++|+..
T Consensus 133 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 133 KADAYPAQLSGGQKQRVGIA---------RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred hhhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 44566778999999999999 9999999999999999999999999999999988654 667778888643
No 183
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=1.1e-14 Score=114.08 Aligned_cols=170 Identities=19% Similarity=0.198 Sum_probs=107.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.++.++.+.|.||||+||||++++|++...+..+.|. +++-|.--
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~--------------------------------~~G~dit~- 69 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII--------------------------------FDGEDITG- 69 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEE--------------------------------ECCeecCC-
Confidence 467889999999999999999999999999988766662 22222110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHH---HHHHHhcCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAI---LHCLLTKVP 163 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i---~~~~l~~~~ 163 (305)
.........-+ .++ + ..--++...++.+++.-.... +-+.. ....+.++-+++ ++...++..
T Consensus 70 ----~p~~~r~r~Gi-~~V---P---egR~iF~~LTVeENL~~g~~~--~~~~~--~~~~~~e~v~~lFP~Lker~~~~a 134 (237)
T COG0410 70 ----LPPHERARLGI-AYV---P---EGRRIFPRLTVEENLLLGAYA--RRDKE--AQERDLEEVYELFPRLKERRNQRA 134 (237)
T ss_pred ----CCHHHHHhCCe-EeC---c---ccccchhhCcHHHHHhhhhhc--ccccc--cccccHHHHHHHChhHHHHhcCcc
Confidence 00000000000 000 0 000023333444444332221 10000 111113344444 344556667
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCC
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVP 233 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 233 (305)
..+|+++.|.+|.+ ++|+.+|..+++|||+.++.+.-.+++.+++++++.. ..+.+.++..
T Consensus 135 G~LSGGEQQMLAia---------RALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn 196 (237)
T COG0410 135 GTLSGGEQQMLAIA---------RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN 196 (237)
T ss_pred cCCChHHHHHHHHH---------HHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc
Confidence 89999999999999 9999999999999999999999999999999999865 5566666653
No 184
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.9e-12 Score=113.63 Aligned_cols=160 Identities=19% Similarity=0.224 Sum_probs=112.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++++|+.+++. ++++++++ ......++++.+.+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~ 111 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNI 111 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHH
Confidence 4468999999999999999999988653 44444321 11233355555544
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. ...+.+|.+|+.+..+.+.+++ |. ..+++.
T Consensus 112 ~~~p~~~~~kV~iIDE~~~ls~---------~a~naLLk~LEep---p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~ 176 (509)
T PRK14958 112 PYAPTKGRFKVYLIDEVHMLSG---------HSFNALLKTLEEP---PSHVKFILATTDHHKLPVTVLS--RC-LQFHLA 176 (509)
T ss_pred hhccccCCcEEEEEEChHhcCH---------HHHHHHHHHHhcc---CCCeEEEEEECChHhchHHHHH--Hh-hhhhcC
Confidence 32 2345999999998742 1234455555543 3446666777888888888877 55 567888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+....+...++..+...+.+.++.++..+.| +.+++..++.++.
T Consensus 177 ~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 177 QLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 888888888888888888888888889999988765 6667777776654
No 185
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=1e-11 Score=101.63 Aligned_cols=148 Identities=24% Similarity=0.278 Sum_probs=96.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
.+.++|+||+|||||+|+++++..+ +....+++..+. ...+...++.. .+..+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEAL--EGRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHH--hcCCEEEEeCcccccCChH
Confidence 4569999999999999999997654 445556654332 22333344333 2345999999997653221
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC---CccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 90 RSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV---DVSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l---~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
. ...++..++...+ .+.-+++.+...+.++ .+.+++ |+ ...++++.|+.+++..+++........
T Consensus 111 ----~---~~~lf~l~n~~~~-~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 ----D---EVALFDFHNRARA-AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred ----H---HHHHHHHHHHHHH-cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 1 1223344443333 2222333333455555 567776 65 467899999999999999986766678
Q ss_pred CCCHHhHHHHHHHcCC
Q psy5649 165 SLSTDQIQQVAFITHG 180 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g 180 (305)
.++.+.++.++..+.|
T Consensus 181 ~l~~e~~~~La~~~~r 196 (233)
T PRK08727 181 ALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCHHHHHHHHHhCCC
Confidence 8999999999988653
No 186
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.46 E-value=1.5e-15 Score=125.55 Aligned_cols=69 Identities=17% Similarity=0.079 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|....+.+.+.+.+.... +.+.++++|+..
T Consensus 138 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~ 207 (243)
T TIGR02315 138 KAYQRADQLSGGQQQRVAIA---------RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207 (243)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999887543 566777888653
No 187
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.45 E-value=4.6e-12 Score=102.47 Aligned_cols=167 Identities=22% Similarity=0.306 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHH-HHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEF-RLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
+.+.||||+|+|||+|+++++++. +..+.++++.++...+...... .+..+.+.. ....+|+|||++.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc
Confidence 458999999999999999999864 4567788766554332211111 111111111 24559999999987421
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC---CccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV---DVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKV 162 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l---~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~ 162 (305)
......++..++.....+. .+++.+...+.++ .+.+.+ |+. ..+++..|+.++|..+++......
T Consensus 113 -------~~~q~~lf~l~n~~~~~~k-~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 113 -------QRTQEELFHLFNRLIESGK-QLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp -------HHHHHHHHHHHHHHHHTTS-EEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHT
T ss_pred -------hHHHHHHHHHHHHHHhhCC-eEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHh
Confidence 1223445555555555333 4445554555554 455555 654 478999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
...++.+.++.++.... -+.++|..++.+.
T Consensus 183 ~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 183 GIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp T--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 99999988888887643 2555555555543
No 188
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.45 E-value=8.6e-16 Score=130.69 Aligned_cols=70 Identities=10% Similarity=-0.008 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..++....+|+|+.++++.+ ++++.++..+++|||++++|+.+...+.+.+.+++..+.+.++.+|....
T Consensus 131 ~~~~~~~~LS~G~~qrl~la---------~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 131 KADAKVGELSGGMKRRLTLA---------RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred HhcCchhhCCHHHHHHHHHH---------HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 34555678999999999999 99999999999999999999999999999999987667778888886653
No 189
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.8e-12 Score=112.15 Aligned_cols=161 Identities=17% Similarity=0.241 Sum_probs=116.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcC------------------------CeEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMK------------------------VHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~------------------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+|+.+|..++ ++++++++++. .....++.+.+.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~ 108 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENS 108 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHH
Confidence 45799999999999999999998653 34455555421 1234456666555
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. .+.+.+|.+|+..+.+...+++ |+ ..+++.
T Consensus 109 ~~~P~~~~~KVvIIDEah~Ls~---------~A~NaLLK~LEeP---p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~ 173 (491)
T PRK14964 109 CYLPISSKFKVYIIDEVHMLSN---------SAFNALLKTLEEP---APHVKFILATTEVKKIPVTIIS--RC-QRFDLQ 173 (491)
T ss_pred HhccccCCceEEEEeChHhCCH---------HHHHHHHHHHhCC---CCCeEEEEEeCChHHHHHHHHH--hh-eeeecc
Confidence 43 2345999999987732 2334556666643 3456677777888888888887 55 668999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
.++..+....+...+.+.+..++.+.++.++..+.| +.+++..++.++..
T Consensus 174 ~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 174 KIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999999999999888888889999999999988765 66666666666543
No 190
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.45 E-value=1.1e-15 Score=123.13 Aligned_cols=69 Identities=20% Similarity=0.185 Sum_probs=59.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.|+++.+ ++++.++..+++|||++++|+...+.+.+.+.+....+.+.++++|+..
T Consensus 119 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 187 (205)
T cd03226 119 LKERHPLSLSGGQKQRLAIA---------AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE 187 (205)
T ss_pred hcCCCchhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45666788999999999999 9999999999999999999999999999999988655667778888643
No 191
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=2.8e-16 Score=135.67 Aligned_cols=69 Identities=22% Similarity=0.212 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+..
T Consensus 133 ~~~~~~~~LSgGq~qRv~lA---------raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 133 KADRYPAQLSGGQKQRVAIA---------RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999988654 567778888654
No 192
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.45 E-value=1.3e-15 Score=123.54 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 128 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 128 KADAYPAQLSGGQQQRVAIA---------RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred HhhhCccccCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999988655667777888653
No 193
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.45 E-value=2.1e-15 Score=122.99 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 125 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 125 RRKQLAGTLSGGEQQMLAIA---------RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred hhhCchhhCCHHHHHHHHHH---------HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45566778999999999999 9999999999999999999999999999999988655567777888643
No 194
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.45 E-value=1.7e-15 Score=127.93 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.|+++.+ ++++.++..+++|||+.++|......+.+.+.++... +.+.++++|+..
T Consensus 137 ~~~~~~~~LSgGq~qrv~iA---------raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 206 (287)
T PRK13637 137 YKDKSPFELSGGQKRRVAIA---------GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME 206 (287)
T ss_pred hccCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34566788999999999999 9999999999999999999999999999999988654 667788888643
No 195
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.45 E-value=7e-12 Score=117.08 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=104.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH-----hCCCeEEEEcccccccC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL-----DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~vl~ide~d~l~~ 86 (305)
...+++|+|||||||||+++++++..+.++..+++.... ...++..+..+. .....+|+|||+|.+..
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 345799999999999999999999999988888775321 112333333331 13457999999998732
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC--CCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh----
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS--LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT---- 160 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~--~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~---- 160 (305)
. . ...+...++ ...+++|++|+. ...+++++.+ |. ..+.++.++.+++..+++..+.
T Consensus 124 ~-----q----QdaLL~~lE-----~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~ 186 (725)
T PRK13341 124 A-----Q----QDALLPWVE-----NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKER 186 (725)
T ss_pred H-----H----HHHHHHHhc-----CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHh
Confidence 1 1 122333333 355666766543 3467788877 43 4688999999999999998776
Q ss_pred ---cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 161 ---KVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 161 ---~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
.....++++.++.++....| ..+++..++..
T Consensus 187 ~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 187 GYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred hcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34567888889999877543 23333344443
No 196
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.45 E-value=8.5e-16 Score=124.50 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.|+++.+ ++++.++..+++|||++++|..+...+.+.+.+.... +.+.++++|+..
T Consensus 123 ~~~~~~~~LSgG~~qrl~la---------~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 123 LLNRYPHELSGGQQQRVALA---------RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred hhhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 44566778999999999999 9999999999999999999999999999999987543 566778888653
No 197
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.45 E-value=6.7e-16 Score=133.45 Aligned_cols=69 Identities=25% Similarity=0.227 Sum_probs=61.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 129 ~~~~~~~~LSgGq~QRvalA---------rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 129 LADRYPAQLSGGQKQRVALA---------RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56677889999999999999 9999999999999999999999999999999988655 567788888654
No 198
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.45 E-value=1e-15 Score=124.07 Aligned_cols=68 Identities=19% Similarity=0.181 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
..+..+.++|+|+.++++.+ ++++.++..+++|||+.+.|+.+.+.+.+.+.++... +.+.++++|+.
T Consensus 123 ~~~~~~~~LS~G~~qr~~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 123 LLDRKPKQLSGGQRQRVALG---------RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45666788999999999999 9999999999999999999999999999999988653 56777888864
No 199
>KOG0989|consensus
Probab=99.45 E-value=2.3e-12 Score=104.88 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=107.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCe------EEEEecccccccccchHHHHHHHHHHHHHh---------CCC-e
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVH------TVVIQVADMFSKFYGEAEFRLKAAFDAALD---------HAP-S 74 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~------~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~-~ 74 (305)
....++|||||||||||+.++++|.++..+ +.+.+.++-.+.. ....+++. |..... .+| -
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Kik~-fakl~~~~~~~~~~~~~~fK 131 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKIKN-FAKLTVLLKRSDGYPCPPFK 131 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhhcC-HHHHhhccccccCCCCCcce
Confidence 455689999999999999999999988762 2334444443332 11222222 222221 122 4
Q ss_pred EEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHH
Q psy5649 75 LLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAI 154 (305)
Q Consensus 75 vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 154 (305)
|++|||+|.+.. ..-..+...++.. ...+.++..||..+.+...+.+ |. ..+.|+..........
T Consensus 132 iiIlDEcdsmts---------daq~aLrr~mE~~---s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~r 196 (346)
T KOG0989|consen 132 IIILDECDSMTS---------DAQAALRRTMEDF---SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDR 196 (346)
T ss_pred EEEEechhhhhH---------HHHHHHHHHHhcc---ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHH
Confidence 999999998742 1223444555542 3456678888999999888887 65 5677888888888888
Q ss_pred HHHHHhcCCCCCCHHhHHHHHHHcCCCcHHh
Q psy5649 155 LHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185 (305)
Q Consensus 155 ~~~~l~~~~~~ls~~~~~~la~~t~g~~~~d 185 (305)
++....+.+...+.+.+..++..++|--...
T Consensus 197 L~~Ia~~E~v~~d~~al~~I~~~S~GdLR~A 227 (346)
T KOG0989|consen 197 LEKIASKEGVDIDDDALKLIAKISDGDLRRA 227 (346)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Confidence 8888888999999999999998866644333
No 200
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=1.6e-15 Score=125.31 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 137 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 206 (241)
T cd03256 137 KAYQRADQLSGGQQQRVAIA---------RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206 (241)
T ss_pred hhCCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44566788999999999999 9999999999999999999999999999999987643 567778888643
No 201
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=2.4e-15 Score=128.46 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=60.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+..
T Consensus 169 ~~~~~~~~LSgGqkqRvaiA---------raL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~ 237 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIA---------GILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237 (320)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45667788999999999999 9999999999999999999999999999999887655667788888654
No 202
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.5e-11 Score=110.80 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=102.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC-----------------------eEEEEecccccccccchHHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV-----------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~-----------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (305)
+..+||+||+||||||+++++|..+.. .+.++++++. .....++.+.+.+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~ 109 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVL 109 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHh
Confidence 445699999999999999999998753 2444444311 11233444433332
Q ss_pred ----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 70 ----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 70 ----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
...+.|++|||+|.+. ......++..++.. ...+++|.+++....+.+.+.+ |+ ..++++.
T Consensus 110 ~~p~~~~~kVVIIDEad~ls---------~~a~naLLk~LEep---~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ 174 (504)
T PRK14963 110 LAPLRGGRKVYILDEAHMMS---------KSAFNALLKTLEEP---PEHVIFILATTEPEKMPPTILS--RT-QHFRFRR 174 (504)
T ss_pred hccccCCCeEEEEECccccC---------HHHHHHHHHHHHhC---CCCEEEEEEcCChhhCChHHhc--ce-EEEEecC
Confidence 2345699999998652 22344455555532 3455667777888888888887 55 5789999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCC
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHG 180 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g 180 (305)
++..+....+...+++.+...+.+.++.++..+.|
T Consensus 175 ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 175 LTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999999999888888888888889999988665
No 203
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.44 E-value=2.5e-15 Score=126.42 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=60.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+.++|+.+...+.+.+.++... +.+.++++|+..
T Consensus 133 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~ 202 (279)
T PRK13635 133 FLNREPHRLSGGQKQRVAIA---------GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD 202 (279)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 55667889999999999999 9999999999999999999999999999999988765 667777877543
No 204
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.44 E-value=1.2e-11 Score=101.11 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=109.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
..+..++|+||+|||||+|+++++++. +..+..+++.+.... + .......+++|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~--~~~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------F--DFDPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------H--hhcccCCEEEEeChhhcCc-
Confidence 556789999999999999999999865 567777877554211 1 1122456899999997621
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC--CCCccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD--NVDVSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~--~l~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
... ..+...++........++++.++..+. .+...+.+ |+ ...+++++|+..++..++.....+..
T Consensus 105 -----~~~---~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 105 -----AQQ---IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred -----hHH---HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 111 223334433333223333333332221 23344444 55 46899999999999999887777778
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhh
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
..++.+.++.++.. -.=+.+++..++..-....... ...++...+.+++.
T Consensus 175 v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~~----~~~i~~~~~~~~l~ 224 (227)
T PRK08903 175 LQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLEQ----KRPVTLPLLREMLA 224 (227)
T ss_pred CCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHh
Confidence 88999889988874 3336666666666543322222 23455555555543
No 205
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.44 E-value=4.2e-15 Score=120.43 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=60.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++...+.+.++++|+..
T Consensus 125 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLA---------RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999988655667778888654
No 206
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.44 E-value=1.5e-15 Score=129.39 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=60.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..++....+|+|+.++++.+ ++++.++..+++|||++++|+.+.+.+.+.+.++...+.+.++++|....
T Consensus 128 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 128 KADVRVALLSGGMKRRLTLA---------RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred HhcCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 44566778999999999999 99999999999999999999999999999999886556677888886543
No 207
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=3e-15 Score=121.89 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... .+.+.++++|...
T Consensus 124 ~~~~~~~~LSgG~~qrl~la---------~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 193 (220)
T cd03293 124 FENAYPHQLSGGMRQRVALA---------RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193 (220)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 45666788999999999999 999999999999999999999999999999988754 3567778888654
No 208
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=3.3e-15 Score=128.07 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=61.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++++.++|+|+.|+++.+ ++++.++..+++|||++.+|......+.+.+.+++.. +.+.++++|+..
T Consensus 147 ~~~~~p~~LSgGq~QRv~iA---------rAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 216 (327)
T PRK11308 147 HYDRYPHMFSGGQRQRIAIA---------RALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS 216 (327)
T ss_pred HhcCCCccCCHHHHHHHHHH---------HHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 56778899999999999999 9999999999999999999999999999999988654 667788888654
No 209
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=1.1e-11 Score=99.79 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=89.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCchh
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQ 93 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~~ 93 (305)
..++|+||+|||||+|++++++..+..+ ++.... ....+ ....+|+|||+|.+ +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~-----------~~~~~-----~~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF-----------NEEIL-----EKYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh-----------chhHH-----hcCCEEEEeccccc--------h
Confidence 5699999999999999999998776432 211100 00111 23358999999943 1
Q ss_pred HHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCC-ccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCCCCCCHHh
Q psy5649 94 ERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD-VSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVPHSLSTDQ 170 (305)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~-~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~ 170 (305)
. ..++..++.+.+ .+..+++++++.+..+. +.+++ |+. ..+++..|+.+++..+++.........++++.
T Consensus 99 ~----~~lf~l~N~~~e-~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev 171 (214)
T PRK06620 99 E----PALLHIFNIINE-KQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQI 171 (214)
T ss_pred H----HHHHHHHHHHHh-cCCEEEEEcCCCccccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1 133444444444 34466677766665531 55666 663 46899999999999999888777778899999
Q ss_pred HHHHHHHcCC
Q psy5649 171 IQQVAFITHG 180 (305)
Q Consensus 171 ~~~la~~t~g 180 (305)
++.++....+
T Consensus 172 ~~~L~~~~~~ 181 (214)
T PRK06620 172 IDFLLVNLPR 181 (214)
T ss_pred HHHHHHHccC
Confidence 9999877543
No 210
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.43 E-value=3.4e-15 Score=122.17 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=56.3
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+.... .+.++++|+..
T Consensus 139 ~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~ 201 (227)
T cd03260 139 ALGLSGGQQQRLCLA---------RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ 201 (227)
T ss_pred cccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH
Confidence 478999999999999 9999999999999999999999999999999998765 66777888653
No 211
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=1.9e-15 Score=127.66 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=60.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|+..
T Consensus 138 ~~~~~~~~LSgGq~qrl~la---------ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~ 206 (287)
T PRK13641 138 LISKSPFELSGGQMRRVAIA---------GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206 (287)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999988655677788888654
No 212
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.43 E-value=2.9e-15 Score=121.18 Aligned_cols=68 Identities=13% Similarity=-0.008 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.++++... .+.++++|+..
T Consensus 123 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~vsH~~~ 190 (211)
T cd03264 123 RAKKKIGSLSGGMRRRVGIA---------QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVE 190 (211)
T ss_pred HHhCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCC-CEEEEEcCCHH
Confidence 44566788999999999999 9999999999999999999999999999999988753 66777888643
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=2.9e-12 Score=97.27 Aligned_cols=131 Identities=24% Similarity=0.411 Sum_probs=81.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHH---HHHHHHHHHhCCCeEE
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFR---LKAAFDAALDHAPSLL 76 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~vl 76 (305)
++...+..+.+.+++++||+|||||++++.+++.+ +.+++.+++.............. ....+.......+.++
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVL 88 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEE
Confidence 34444555567889999999999999999999998 88888888876554322221111 1222333445678899
Q ss_pred EEcccccccCCCCCchhHHHHHHHHHHHHhhhccc---CCeEEEEEEecCCC--CCCccccCCCCcceEEEcc
Q psy5649 77 LLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL---QACVVLLAVTTSLD--NVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 77 ~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~i~~t~~~~--~l~~~l~~~~r~~~~i~~~ 144 (305)
++||++.+.. .....+...+...... ...+.+|++++... .++..+.+ |++..+.++
T Consensus 89 ilDe~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 89 FIDEIDSLSR---------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EEeChhhhhH---------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 9999997611 1122333333333221 24566777777766 55666655 777666654
No 214
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.43 E-value=2.9e-15 Score=121.98 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=57.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+.... .+.++++|+.
T Consensus 126 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~ 192 (220)
T cd03263 126 KANKRARTLSGGMKRKLSLA---------IALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSM 192 (220)
T ss_pred HHhChhhhCCHHHHHHHHHH---------HHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEcCCH
Confidence 44556678999999999999 9999999999999999999999999999999988653 6677788864
No 215
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.43 E-value=2e-15 Score=127.55 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|+.+...+.+.+.++.. .+.+.++++|+..
T Consensus 138 ~~~~~~~~LSgGq~qrv~la---------raL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 138 VMSQSPFQMSGGQMRKIAIV---------SILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 44566788999999999999 999999999999999999999999999999998854 3677888888654
No 216
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=1.7e-11 Score=112.09 Aligned_cols=162 Identities=20% Similarity=0.263 Sum_probs=115.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
.+..+||+||+|||||++++.+|..+.+ ++++++++. ......++++.+.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~ 110 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDK 110 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHH
Confidence 3556899999999999999999998753 334444321 1234456666666
Q ss_pred HHh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+.. ....|++|||+|.+.. .....++..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++
T Consensus 111 v~~~p~~~~~kViIIDE~~~Lt~---------~a~naLLKtLEep---p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f 175 (559)
T PRK05563 111 VKYAPSEAKYKVYIIDEVHMLST---------GAFNALLKTLEEP---PAHVIFILATTEPHKIPATILS--RC-QRFDF 175 (559)
T ss_pred HhhCcccCCeEEEEEECcccCCH---------HHHHHHHHHhcCC---CCCeEEEEEeCChhhCcHHHHh--Hh-eEEec
Confidence 553 2345999999998731 2334555555532 3455666667788889888887 65 56889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
+.++..+....++..+++.+..++.+.++.++..+.| ..+++..++.++..
T Consensus 176 ~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 176 KRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999998888888888898889999988776 66666666665543
No 217
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.43 E-value=1.1e-15 Score=125.20 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|+.
T Consensus 138 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 138 VLNRYPHELSGGQRQRVAIA---------RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HhhCCchhcCHHHHHHHHHH---------HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45566788999999999999 9999999999999999999999999999999988654 56777888864
No 218
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.43 E-value=2.6e-15 Score=126.56 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=60.0
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCch-hhhhhccCCCCCc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSA-MRQVLVEVPNVKW 237 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 237 (305)
++....+|.|+.++++.+ .+++.+|..+++|||++++|+....++.+.++.+...+ .+.++.+|.....
T Consensus 131 ~~~~~~lS~G~kqrl~ia---------~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~ 200 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIA---------LALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA 200 (293)
T ss_pred CcchhhcCHHHHHHHHHH---------HHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH
Confidence 344567999999999999 99999999999999999999999999999999998876 6778888865433
No 219
>KOG0062|consensus
Probab=99.42 E-value=5.4e-13 Score=115.54 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 240 (305)
...++|+|...+++.+ ++++.+|+.+++|||++.+|.....++...+.... .+.++++|+...++.+
T Consensus 195 pt~slSGGWrMrlaLA---------RAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 195 PTKSLSGGWRMRLALA---------RALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRNFLNTV 261 (582)
T ss_pred cccccCcchhhHHHHH---------HHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHHHHHHH
Confidence 3457999999999999 99999999999999999999999999999888775 5678888888777765
No 220
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.3e-15 Score=127.38 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=60.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|+.+...+.+.+.++... +.+.++++|+..
T Consensus 138 ~~~~~~~~LSgGq~qrv~lA---------raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~ 207 (290)
T PRK13634 138 LLARSPFELSGGQMRRVAIA---------GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME 207 (290)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44667789999999999999 9999999999999999999999999999999988654 677888888654
No 221
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=4.8e-15 Score=123.10 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++.. .+.+.++++|+..
T Consensus 121 ~~~~~~~~LSgGq~qrl~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIA---------RALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44566788999999999999 999999999999999999999999999999988743 3566777888643
No 222
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.42 E-value=7e-15 Score=118.20 Aligned_cols=74 Identities=15% Similarity=0.021 Sum_probs=63.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
+.++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|+...+
T Consensus 122 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 122 FEDVPVRQLSAGQQRRVALA---------RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred HhhCChhhcCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 44566778999999999999 999999999999999999999999999999998765556778888987766
Q ss_pred ccc
Q psy5649 238 SDI 240 (305)
Q Consensus 238 ~~i 240 (305)
+..
T Consensus 193 ~~~ 195 (204)
T PRK13538 193 ASD 195 (204)
T ss_pred ccC
Confidence 553
No 223
>KOG1969|consensus
Probab=99.42 E-value=9.5e-12 Score=111.93 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHh----CCCeEEEEccccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALD----HAPSLLLLDNLDV 83 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~vl~ide~d~ 83 (305)
.+-++.+.+||+||||-||||||+.+|.+.|+.+++|++++- ........++..+.+.-.. .+|.+|++||||-
T Consensus 321 s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe--Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE--RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred cCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc--ccHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 455667789999999999999999999999999999999873 3344455666665554332 5799999999984
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhcc----cCC--------------eEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 84 LCTGRNRSDQERRLLSCLVTQVDRLHE----LQA--------------CVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 84 l~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~--------------~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
-. ...+..+...+..-.. .+. .-.+|+.||.... |+|+...-|...+.|..
T Consensus 399 a~---------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 399 AP---------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVP 467 (877)
T ss_pred Cc---------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecC
Confidence 21 3334444444431110 011 1235677786554 67766546778899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHh
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALL 198 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~ 198 (305)
|.....++-++..+++.....+...+..++..|+ .||+.-+..-+.++.
T Consensus 468 p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 468 PSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLAS 516 (877)
T ss_pred CChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence 9888888878878888888888888888887755 466666665555554
No 224
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.1e-11 Score=113.62 Aligned_cols=158 Identities=19% Similarity=0.252 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++.+|+.+++. +++++.++ ......++++.+.+
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~ 111 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNV 111 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHH
Confidence 3447999999999999999999988763 23333321 01123344444443
Q ss_pred H----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 L----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
. .....|++|||+|.+.. .....|+..++.- ...+.+|.+|+.+..+.+.+++ |+ ..+.+.
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls~---------~a~NALLKtLEEP---p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~ 176 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLSR---------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQFHLK 176 (647)
T ss_pred HhhhhcCCCEEEEEechHhCCH---------HHHHHHHHHHHcC---CCCeEEEEecCCccccchHHHh--hh-eEeeCC
Confidence 3 23456999999998732 2334555555542 3456677778888899888888 65 789999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
.++..+....+...+.......+.+.++.++..+.|-.. ++..++..
T Consensus 177 ~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R-~Al~lldq 223 (647)
T PRK07994 177 ALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR-DALSLTDQ 223 (647)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 999999999988888777777888888889988776443 33444443
No 225
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=2.5e-15 Score=125.82 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 153 ~~~~~~~~LS~Gq~qrv~lA---------ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~ 222 (269)
T cd03294 153 WEHKYPDELSGGMQQRVGLA---------RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD 222 (269)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999887543 567777888643
No 226
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=2.3e-15 Score=126.97 Aligned_cols=69 Identities=25% Similarity=0.227 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|...
T Consensus 138 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 206 (280)
T PRK13649 138 LFEKNPFELSGGQMRRVAIA---------GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD 206 (280)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 34566778999999999999 9999999999999999999999999999999988655667778888654
No 227
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=4.3e-15 Score=124.98 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=60.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++... +.+.++++|+...
T Consensus 130 ~~~~~~~~LS~Gq~qrl~la---------raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 130 LRDRVPHHLSGGEKKRVAIA---------GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 55667889999999999999 9999999999999999999999999999999888654 6677788886543
No 228
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=3.6e-15 Score=122.50 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 234 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++.. .+.+.++++|+.
T Consensus 138 ~~~~~~~~LSgG~~qrl~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 138 RANHRPSELSGGERQRVAIA---------RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34556778999999999999 999999999999999999999999999999998864 366778888864
No 229
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.42 E-value=1.8e-15 Score=130.12 Aligned_cols=72 Identities=10% Similarity=-0.009 Sum_probs=61.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
..++....+|+|+.++++.+ .+++.++..+++|||++++|+.....+.+.+.++...+.+.++.+|....+
T Consensus 165 ~~~~~~~~LS~G~kqrv~lA---------~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~ 235 (340)
T PRK13536 165 KADARVSDLSGGMKRRLTLA---------RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEA 235 (340)
T ss_pred hhCCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 34555678999999999999 999999999999999999999999999999999876667788888866544
Q ss_pred c
Q psy5649 238 S 238 (305)
Q Consensus 238 ~ 238 (305)
.
T Consensus 236 ~ 236 (340)
T PRK13536 236 E 236 (340)
T ss_pred H
Confidence 3
No 230
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.42 E-value=2.8e-15 Score=122.22 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.|+++.+ ++++.++..+++|||++++|..+...+.+.+.+.... +.+.++++|+..
T Consensus 134 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 134 RINHRPSELSGGERQRVAIA---------RALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999888643 567778888643
No 231
>PRK09087 hypothetical protein; Validated
Probab=99.41 E-value=1.6e-11 Score=99.72 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=105.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCch
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSD 92 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~ 92 (305)
...++|+||+|||||+|+++++...+..+ ++..++.. ..+.... ..+++|||++.+. .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~--~~--- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAA---EGPVLIEDIDAGG--FD--- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhh---cCeEEEECCCCCC--CC---
Confidence 33599999999999999999998766553 33221110 1111111 1478999999752 11
Q ss_pred hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC---CccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 93 QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV---DVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l---~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
. ..++..++...+ .+..+++.++..+..+ .+.+++ |+. ..+++..|+.++|..+++..++.....++
T Consensus 103 -~----~~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~ 174 (226)
T PRK09087 103 -E----TGLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD 174 (226)
T ss_pred -H----HHHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 1 124444444443 3445566665555443 455666 553 67899999999999999998888888999
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
++.++.++....+ +.+.+..++.+....... ....++...+.++++.+
T Consensus 175 ~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~----~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 175 PHVVYYLVSRMER-SLFAAQTIVDRLDRLALE----RKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhh
Confidence 9999999987552 222222222333222221 12335556666666543
No 232
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=1.8e-15 Score=122.28 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=58.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+++....+.+.++++|+..
T Consensus 121 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 189 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFI---------AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME 189 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 34456678999999999999 9999999999999999999999999999999987655567777888643
No 233
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.41 E-value=1.7e-15 Score=124.71 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++...++|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+....+.+.++++|+..
T Consensus 136 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~ 204 (236)
T cd03219 136 LADRPAGELSYGQQRRLEIA---------RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD 204 (236)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 34556678999999999999 9999999999999999999999999999999988655667778888643
No 234
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.41 E-value=2.5e-11 Score=112.26 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=120.9
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccccc-------cchHH----HHHH
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSKF-------YGEAE----FRLK 62 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~~-------~~~~~----~~l~ 62 (305)
+.+....+.+..++|+|||||||||+++.+.+.. ..+++.++|..+.... .+... ...+
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~ 245 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGAR 245 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHH
Confidence 3344444556789999999999999999998765 3468888887652110 00000 0001
Q ss_pred HHHHH----------HHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh-----------------------c
Q psy5649 63 AAFDA----------ALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL-----------------------H 109 (305)
Q Consensus 63 ~~~~~----------~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~ 109 (305)
..+.. ....+..+|||||++.+-.. . ...+...++.- .
T Consensus 246 ~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----~----Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~ 316 (615)
T TIGR02903 246 RDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----L----QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLF 316 (615)
T ss_pred HHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----H----HHHHHHHHhhCeEEeecceeccCCcccchhhhhhc
Confidence 11110 01224569999999876321 1 11222222210 0
Q ss_pred c--cCCeEEEEE-EecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhH
Q psy5649 110 E--LQACVVLLA-VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDL 186 (305)
Q Consensus 110 ~--~~~~~~~i~-~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di 186 (305)
+ ....+++++ |++.++.+++++++ |+. .+.+++++..+...|++..+.+....++.+.++.++..+. .++..
T Consensus 317 ~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRra 391 (615)
T TIGR02903 317 EEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKA 391 (615)
T ss_pred ccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHH
Confidence 0 122345555 44567788999887 774 6789999999999999988887666788877777776543 34444
Q ss_pred HHHHHHHHHHHhhhh-----cCCCccccHHHHHHHhhhcC
Q psy5649 187 ATLLSNATSALLVET-----EGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 187 ~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 221 (305)
...+..+....+.+. ......++.+++.++++.-+
T Consensus 392 ln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 392 VNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 444544443332221 11233577888888887543
No 235
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=5.6e-15 Score=122.08 Aligned_cols=69 Identities=19% Similarity=0.194 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 134 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 134 YADRFPLHLSGGQQQRVAIA---------RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45666788999999999999 9999999999999999999999999999999988655667777888643
No 236
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.41 E-value=4.6e-15 Score=124.54 Aligned_cols=69 Identities=17% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+.++|+.+...+.+.+.+++..+.+.++++|+..
T Consensus 129 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~ 197 (274)
T PRK13644 129 YRHRSPKTLSGGQGQCVALA---------GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197 (274)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45667789999999999999 9999999999999999999999999999999988765677788888643
No 237
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.41 E-value=2.6e-15 Score=123.29 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+.
T Consensus 126 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 126 LRKSKASSLSGGERRRVEIA---------RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 44566778999999999999 999999999999999999999999999999988865566677788864
No 238
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.41 E-value=6.4e-15 Score=120.62 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++... +.+.++++|+.
T Consensus 139 ~~~~~~~~LS~Ge~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 139 RLDHLPAQLSGGEQQRVALA---------RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45566788999999999999 9999999999999999999999999999999888543 56777788864
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.41 E-value=3.4e-15 Score=129.61 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=60.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 124 ~~~~~~~~LSgGqkqRvalA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 124 LLGRLPGRLSGGEKQRVAIG---------RALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 55667789999999999999 9999999999999999999999999999999988654 566778888654
No 240
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=2e-11 Score=107.16 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=59.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccch-HHHHHHHHHHHH----HhCCCeEEEEcccccccC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYGE-AEFRLKAAFDAA----LDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~-~~~~l~~~~~~~----~~~~~~vl~ide~d~l~~ 86 (305)
..++||+||+|||||++++++|..++.+++.++++.+.. .+.|. .+..+..+++.+ ....++|+||||+|.+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 467999999999999999999999999999999987653 35554 344455555432 245688999999999976
Q ss_pred C
Q psy5649 87 G 87 (305)
Q Consensus 87 ~ 87 (305)
.
T Consensus 188 ~ 188 (412)
T PRK05342 188 K 188 (412)
T ss_pred c
Confidence 5
No 241
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=3.9e-15 Score=120.45 Aligned_cols=69 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++..+ +.+.++++|+..
T Consensus 121 ~~~~~~~~LS~G~~qrv~ia---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 190 (211)
T cd03298 121 LEKRLPGELSGGERQRVALA---------RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190 (211)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 45566789999999999999 9999999999999999999999999999999988643 567777888654
No 242
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=1.9e-15 Score=124.55 Aligned_cols=69 Identities=25% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.|+++.+ ++++.++..+++|||+++.|....+.+.+.+.++..+ +.+.++++|+..
T Consensus 129 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 129 LADRYPAQLSGGQRQRVALA---------RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred hhhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45566778999999999999 9999999999999999999999999999999988654 567778888643
No 243
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=2e-14 Score=107.09 Aligned_cols=177 Identities=20% Similarity=0.188 Sum_probs=107.3
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++.+.|+||+|+|||||+-.+|+.-.+..++|....- + +.
T Consensus 30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~--------------------------------~-L~- 75 (228)
T COG4181 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ--------------------------------P-LH- 75 (228)
T ss_pred eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCc--------------------------------c-hh-
Confidence 4667899999999999999999999999988887777743111 0 00
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+.++ +........-+.++++ .+.+|.+.+..+++...+.-.|--...-.-..-...+++++-+ .+..+|.++
T Consensus 76 ~ldE-d~rA~~R~~~vGfVFQ------SF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~-Rl~HyP~qL 147 (228)
T COG4181 76 KLDE-DARAALRARHVGFVFQ------SFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGK-RLTHYPAQL 147 (228)
T ss_pred hcCH-HHHHHhhccceeEEEE------eeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccc-ccccCcccc
Confidence 0000 0000000000111110 1113344444555443333222100000000112233444333 456689999
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
|+++.|++|.+ +++..++..+..|||+.++|..+-+.+.+.+-..+.. +.+-++++|+.
T Consensus 148 SGGEQQRVAiA---------RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 148 SGGEQQRVALA---------RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred CchHHHHHHHH---------HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 99999999999 9999999999999999999998888888877666543 66777788864
No 244
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=3.5e-11 Score=110.09 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=113.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeE------------------------EEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHT------------------------VVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~------------------------~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++++|+.+++.. ++++.++ ......++.+++.+
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a 111 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENA 111 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHH
Confidence 45789999999999999999999876531 2222211 12234566666554
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....|+..++.. ...+.+|.+|+....+...+++ |+ ..+.++
T Consensus 112 ~~~P~~gk~KVIIIDEad~Ls~---------~A~NALLKtLEEP---p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~ 176 (709)
T PRK08691 112 QYAPTAGKYKVYIIDEVHMLSK---------SAFNAMLKTLEEP---PEHVKFILATTDPHKVPVTVLS--RC-LQFVLR 176 (709)
T ss_pred HhhhhhCCcEEEEEECccccCH---------HHHHHHHHHHHhC---CCCcEEEEEeCCccccchHHHH--HH-hhhhcC
Confidence 32 2346999999987531 2234455666542 3456677778888888888876 66 668888
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
.++..+....+...+++.+..++.+.++.++..+.| +.+++..++.++..
T Consensus 177 ~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia 226 (709)
T PRK08691 177 NMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIA 226 (709)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 999999999999899988888999899999987654 56666666665543
No 245
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.8e-11 Score=114.29 Aligned_cols=159 Identities=20% Similarity=0.290 Sum_probs=107.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeE------------------------EEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHT------------------------VVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~------------------------~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+||||||+++++|+.+++.. ++++..+ ......++.+.+.+
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v 111 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNV 111 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHH
Confidence 44569999999999999999999987641 1121110 01122344444433
Q ss_pred H----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 L----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
. .....|++|||+|.+. ......|+..++.. ...+.+|.+|+....+.+.+++ |+ ..+.++
T Consensus 112 ~~~P~~gk~KViIIDEAh~LT---------~eAqNALLKtLEEP---P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fk 176 (944)
T PRK14949 112 QYRPSRGRFKVYLIDEVHMLS---------RSSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLK 176 (944)
T ss_pred HhhhhcCCcEEEEEechHhcC---------HHHHHHHHHHHhcc---CCCeEEEEECCCchhchHHHHH--hh-eEEeCC
Confidence 3 2334699999999873 22344555555542 3456667778888888888887 65 778999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.++..+....++..+......++.+.++.++..+.|-.+ ++..++..+
T Consensus 177 pLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R-~ALnLLdQa 224 (944)
T PRK14949 177 SLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR-DALSLTDQA 224 (944)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 999999998888878776777888889999988777443 444444433
No 246
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=9.9e-14 Score=105.69 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=104.9
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++++.+++.+.+.||+|||||||++.+|+...+.-+.+......-..+|. ...|+|-++ .+
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga---------------ergvVFQ~~--~L-- 85 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA---------------ERGVVFQNE--AL-- 85 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc---------------cceeEeccC--cc--
Confidence 46778999999999999999999999999888776666433221111110 011222111 11
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH-------
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL------- 159 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l------- 159 (305)
+.+ .|..+++.+.++-.|. +..+|..+...++
T Consensus 86 ---------------lPW----------------l~~~dNvafgL~l~Gi----------~k~~R~~~a~q~l~~VgL~~ 124 (259)
T COG4525 86 ---------------LPW----------------LNVIDNVAFGLQLRGI----------EKAQRREIAHQMLALVGLEG 124 (259)
T ss_pred ---------------chh----------------hHHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHhCccc
Confidence 111 1334445555544332 3455555554443
Q ss_pred --hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCC
Q psy5649 160 --TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVP 233 (305)
Q Consensus 160 --~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 233 (305)
+++..++|+++.|++..+ +++..++..+.+|||....|..+.+.+.+.+-++.. .+.....++|+
T Consensus 125 ~~~~~i~qLSGGmrQRvGiA---------RALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ 192 (259)
T COG4525 125 AEHKYIWQLSGGMRQRVGIA---------RALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192 (259)
T ss_pred ccccceEeecchHHHHHHHH---------HHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 345678999999999999 999999999999999999999999988887766643 35555567764
No 247
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=2.1e-15 Score=131.83 Aligned_cols=69 Identities=17% Similarity=0.100 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++.+|+...+.+.+.+.++... +.+.++++|+..
T Consensus 157 ~~~~~~~~LSgGq~QRv~LA---------rAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLA---------RALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred hhhcCcccCCHHHHHHHHHH---------HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 45677889999999999999 9999999999999999999999999999999887543 567778888653
No 248
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.40 E-value=1.1e-14 Score=121.43 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=59.1
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++.+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 147 ~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 147 GKYPVHLSGGQQQRVSIA---------RALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred hCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 456778999999999999 9999999999999999999999999999999988665677788888654
No 249
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.6e-14 Score=122.32 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=89.6
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccccc
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGG 242 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~g 242 (305)
..++|.++.|.++++ +++..++..+++|||++.+.....+.+.+.+++++.++...++++|.....-+++.
T Consensus 143 v~~LsiaqrQ~VeIA---------rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~D 213 (500)
T COG1129 143 VGDLSIAQRQMVEIA---------RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIAD 213 (500)
T ss_pred hhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcC
Confidence 346899999999999 99999999999999999999999999999999999999999999996543332211
Q ss_pred -------------hH---H-HHHHHHHHh-------hccC----------------CCHHHHHhcCCCCCcc--eeeecC
Q psy5649 243 -------------QD---E-VKLKLRQSV-------EWPL----------------KHPEAFARLGIKPPRG--ILMFGP 280 (305)
Q Consensus 243 -------------~~---~-~~~~l~~~~-------~~~~----------------~~~~~~~~~~~~~~~g--ill~Gp 280 (305)
.. + -...+.+.+ .+|. ..+..+.+..|+..+| +.|+|-
T Consensus 214 ritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGL 293 (500)
T COG1129 214 RITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGL 293 (500)
T ss_pred EEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhhcccccccCCCCcEEEEecCCCCCceeCceeEEeCCcEEEEecc
Confidence 11 0 001111111 0110 1111245566777777 889999
Q ss_pred CCchHHHHHHHHhhh
Q psy5649 281 PGCSKTMIAKALATE 295 (305)
Q Consensus 281 pG~GKT~la~~lA~~ 295 (305)
-|+|+|.++++|.+.
T Consensus 294 vGaGRTEl~~~lfG~ 308 (500)
T COG1129 294 VGAGRTELARALFGA 308 (500)
T ss_pred ccCCHHHHHHHHhCC
Confidence 999999999999884
No 250
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=4e-14 Score=104.49 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+.++.|..+|+|+.|++|++ ++++.+++.+++|||++.+|+.-...+.+.++++...+.+.++++|..
T Consensus 134 ~adr~plhlsggqqqrvaia---------ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 134 YADRYPLHLSGGQQQRVAIA---------RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred ccccCceecccchhhhHHHH---------HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 56778899999999999999 999999999999999999999999999999999999899998888853
No 251
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.40 E-value=4.1e-15 Score=121.43 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=58.5
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+....++|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+++..+.+.++++|...
T Consensus 144 ~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~ 210 (224)
T TIGR02324 144 HLPPATFSGGEQQRVNIA---------RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE 210 (224)
T ss_pred hCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 456778999999999999 9999999999999999999999999999999988655667778888643
No 252
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.40 E-value=1e-14 Score=119.67 Aligned_cols=71 Identities=24% Similarity=0.182 Sum_probs=60.8
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
....++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+.... +.+.++++|+.
T Consensus 122 ~~~~~~~~~~LS~G~~qrv~la---------~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 122 KEMLGRRGGDLSGGQQQQLAIA---------RALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 3455677788999999999999 9999999999999999999999999999999988653 56777888865
Q ss_pred C
Q psy5649 235 V 235 (305)
Q Consensus 235 ~ 235 (305)
.
T Consensus 193 ~ 193 (230)
T TIGR03410 193 D 193 (230)
T ss_pred H
Confidence 3
No 253
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.6e-11 Score=110.99 Aligned_cols=160 Identities=16% Similarity=0.227 Sum_probs=110.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe-----------------------------EEEEecccccccccchHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH-----------------------------TVVIQVADMFSKFYGEAEFRLKA 63 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~-----------------------------~~~v~~~~~~~~~~~~~~~~l~~ 63 (305)
+..+||+||+|+||||+++++|+.+++. +++++..+ ......+++
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iRe 111 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQ 111 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHH
Confidence 4457999999999999999999988652 22232211 112334556
Q ss_pred HHHHHHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcce
Q psy5649 64 AFDAALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQ 139 (305)
Q Consensus 64 ~~~~~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~ 139 (305)
+.+.+... .-.|++|||+|.+... ..+.++..++. ....+.+|.+|+.+..+...+++ |. .
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~Ls~~---------a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlS--Rc-~ 176 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHMLTNT---------AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLS--RC-L 176 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhhCCHH---------HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHH--hc-e
Confidence 66554322 2349999999987421 23344454443 23456667777788888877877 55 7
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 140 EIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 140 ~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++++.++..+....++..+.+.+..++.+.+..++..+.| +.+++..++.++.
T Consensus 177 ~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~i 230 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAI 230 (618)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 78999999999999998888888888888889999988776 5566556654443
No 254
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.40 E-value=1.9e-15 Score=128.01 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 143 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 143 YVKRSPFELSGGQKRRVALA---------GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 44556778999999999999 9999999999999999999999999999999887543 567777888653
No 255
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=2.5e-15 Score=124.14 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+.... +.+.++++|+..
T Consensus 128 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~ 197 (242)
T cd03295 128 FADRYPHELSGGQQQRVGVA---------RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197 (242)
T ss_pred HHhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 34556678999999999999 9999999999999999999999999999999988654 566777888643
No 256
>KOG0740|consensus
Probab=99.39 E-value=4.3e-13 Score=115.60 Aligned_cols=77 Identities=44% Similarity=0.794 Sum_probs=68.7
Q ss_pred hhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+....+.+.|+|++|++++++.+.+.+.||..++++|..+ ..+.+|+||+||||+|||+|++|+|.|++..|+.|+
T Consensus 142 EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 142 EIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 44455677899999999999999999999999999999864 345678999999999999999999999999999874
No 257
>PRK05642 DNA replication initiation factor; Validated
Probab=99.39 E-value=2.6e-11 Score=99.25 Aligned_cols=159 Identities=19% Similarity=0.241 Sum_probs=101.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
+.++|+||+|+|||+|++++++++ +....+++..++... ...+.+... ...+|+|||++.+.....
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCChH-
Confidence 578999999999999999998754 456777776655421 112222222 124889999997643211
Q ss_pred chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC---CccccCCCCc--ceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 91 SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV---DVSLRTPGRL--DQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l---~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
. ...++..++...+ .+..++++++..+.++ .+.+++ |+ ...+.+..|+.+++..+++.........
T Consensus 115 ---~---~~~Lf~l~n~~~~-~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~ 185 (234)
T PRK05642 115 ---W---EEALFHLFNRLRD-SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLH 185 (234)
T ss_pred ---H---HHHHHHHHHHHHh-cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 1234444444444 3445566666555444 456666 66 3667889999999999998666666778
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
++++.++.++....+ +.+.+..++..-
T Consensus 186 l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 186 LTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 899888888866433 344444444433
No 258
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=8.7e-15 Score=120.77 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 129 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 129 RAHHYPSELSGGQQQRVAIA---------RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred HHhcChhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45666788999999999999 9999999999999999999999999999999888655667777888654
No 259
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.39 E-value=7.7e-14 Score=111.84 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=63.6
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
.++....+|+|+.++++.+ ++++.++..+++|||+++.|....+.+.+.+.+....+.+.++++|+...+.
T Consensus 119 ~~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~ 189 (201)
T cd03231 119 EDRPVAQLSAGQQRRVALA---------RLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189 (201)
T ss_pred hcCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhh
Confidence 4556678999999999999 9999999999999999999999999999999887655667788888776665
Q ss_pred cccc
Q psy5649 239 DIGG 242 (305)
Q Consensus 239 ~i~g 242 (305)
+.+.
T Consensus 190 ~~~~ 193 (201)
T cd03231 190 EAGA 193 (201)
T ss_pred hccc
Confidence 5543
No 260
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=8.5e-15 Score=122.76 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..+..+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|...
T Consensus 135 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 135 RADYEPNALSGGQKQRVAIA---------GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 34566778999999999999 9999999999999999999999999999999887543 566777877653
No 261
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=5.7e-15 Score=123.90 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+.... +.+.++++|...
T Consensus 135 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 204 (271)
T PRK13632 135 YLDKEPQNLSGGQKQRVAIA---------SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204 (271)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh
Confidence 56677789999999999999 9999999999999999999999999999999988654 356677777653
No 262
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=2.8e-11 Score=109.53 Aligned_cols=159 Identities=17% Similarity=0.261 Sum_probs=110.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+|+++|..+.+ +++++++++. .....++.+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~ 111 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNI 111 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHH
Confidence 456999999999999999999998753 2333332211 1223455555544
Q ss_pred HhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
... ...|++|||+|.+.. .....|+..++.. ...+++|.+|+.+..+.+.+++ |+ ..++++
T Consensus 112 ~~~P~~~~~KVIIIDEad~Lt~---------~A~NaLLKtLEEP---p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~ 176 (605)
T PRK05896 112 NYLPTTFKYKVYIIDEAHMLST---------SAWNALLKTLEEP---PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFK 176 (605)
T ss_pred HhchhhCCcEEEEEechHhCCH---------HHHHHHHHHHHhC---CCcEEEEEECCChHhhhHHHHh--hh-hhcccC
Confidence 432 345999999997731 1234556666543 3456667777888888888887 65 578999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.++..+....+...+.+.+..++.+.++.++..+.| +.+++..++...
T Consensus 177 ~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 177 KLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 999999999888888877888888889998888766 455555555553
No 263
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=7.1e-15 Score=124.00 Aligned_cols=69 Identities=19% Similarity=0.202 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++....+|+|+.++++.+ ++++.++..+++|||+.++|..+...+.+.+.++... +.+.++++|+..
T Consensus 134 ~~~~~~~~LS~G~~qrl~la---------raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 134 LKDKPTHCLSFGQKKRVAIA---------GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45667889999999999999 9999999999999999999999999999999888654 567777877653
No 264
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=9.9e-15 Score=122.98 Aligned_cols=70 Identities=17% Similarity=0.159 Sum_probs=60.4
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+.++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+..
T Consensus 136 ~~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~ 206 (280)
T PRK13633 136 EYRRHAPHLLSGGQKQRVAIA---------GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME 206 (280)
T ss_pred hHhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 356677889999999999999 9999999999999999999999999999999988543 667777777543
No 265
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.1e-13 Score=114.18 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=63.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 236 (305)
.++.+|+++|+|+.||+..+ .+++.++..+++|||+..+|...+..+.+.+++++. .+.+.++++|+..-
T Consensus 146 ~~~~YPhelSGGMrQRV~IA---------mala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v 216 (316)
T COG0444 146 RLKSYPHELSGGMRQRVMIA---------MALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV 216 (316)
T ss_pred HHhhCCcccCCcHHHHHHHH---------HHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56778999999999999999 999999999999999999999999999999999876 46777889998654
Q ss_pred ccc
Q psy5649 237 WSD 239 (305)
Q Consensus 237 ~~~ 239 (305)
...
T Consensus 217 va~ 219 (316)
T COG0444 217 VAE 219 (316)
T ss_pred HHH
Confidence 333
No 266
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.38 E-value=1e-14 Score=127.56 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++...++|+|++|+++.+ +++++++..+++|||+.++|......+.+.+.++...+.+.++++|+..
T Consensus 132 ~~~~~~~~LSgGerQRv~IA---------rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~ 200 (402)
T PRK09536 132 FADRPVTSLSGGERQRVLLA---------RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD 200 (402)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 45566788999999999999 9999999999999999999999999999999988755667777888643
No 267
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=4e-15 Score=125.05 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=60.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.++.+.++|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++...+.+.++++|+..
T Consensus 130 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~ 198 (275)
T PRK13639 130 FENKPPHHLSGGQKKRVAIA---------GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD 198 (275)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 45666788999999999999 9999999999999999999999999999999988655677788888654
No 268
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=9.8e-15 Score=125.16 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.+++++.++|+|+.|+++.+ ++++.++..+++|||++.+|..+...+.+.+.+++. .+.+.++++|+..
T Consensus 146 ~l~~~p~~LSgGq~QRv~iA---------rAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 146 RLDVYPHQLSGGMSQRVMIA---------MAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred HHhCCchhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45678889999999999999 999999999999999999999999999999998865 3667788888754
No 269
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.38 E-value=4.5e-15 Score=124.18 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.++.....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 143 ~~~~~~~~LSgGe~qrv~la---------ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 212 (265)
T TIGR02769 143 DADKLPRQLSGGQLQRINIA---------RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR 212 (265)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 34556778999999999999 9999999999999999999999999999999988654 567778888654
No 270
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.3e-14 Score=119.57 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+..+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 130 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (237)
T PRK11614 130 RRIQRAGTMSGGEQQMLAIG---------RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN 198 (237)
T ss_pred HHhCchhhCCHHHHHHHHHH---------HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH
Confidence 34556778999999999999 9999999999999999999999999999999988655677778888643
No 271
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.7e-13 Score=120.10 Aligned_cols=72 Identities=42% Similarity=0.749 Sum_probs=67.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.....+.|+.|.+++|+.+.|.+. .++.|+.|..+|-..|+|++|+||||||||+||+++|+|.+.||+++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS 215 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 215 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc
Confidence 466889999999999999999988 578889999999999999999999999999999999999999999874
No 272
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.38 E-value=1.2e-14 Score=117.35 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=58.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 119 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 187 (208)
T cd03268 119 SAKKKVKGFSLGMKQRLGIA---------LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS 187 (208)
T ss_pred HHhhhHhhCCHHHHHHHHHH---------HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34556778999999999999 9999999999999999999999999999999887655566777888643
No 273
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=2.6e-11 Score=105.81 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=58.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccch-HHHHHHHHHHHH----HhCCCeEEEEcccccccC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYGE-AEFRLKAAFDAA----LDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~-~~~~l~~~~~~~----~~~~~~vl~ide~d~l~~ 86 (305)
..++||+||+|||||++++++|..++.++..++++.+.. .+.|. .+..+..+++.+ ....++||+|||+|.+.+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 358999999999999999999999999999999887653 35555 345555555432 245678999999998876
Q ss_pred C
Q psy5649 87 G 87 (305)
Q Consensus 87 ~ 87 (305)
.
T Consensus 196 ~ 196 (413)
T TIGR00382 196 K 196 (413)
T ss_pred h
Confidence 4
No 274
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.37 E-value=4e-15 Score=124.72 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|++++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 136 ~~~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 136 AAKLMPSELSGGMARRAALA---------RAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 45566788999999999999 9999999999999999999999999999999988654 567778888643
No 275
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=6.2e-11 Score=107.88 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=103.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
...+||+||+|+||||+++.+|+.+.+. +++++..... .... .+.+.+.+...
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~--~Id~-iR~L~~~~~~~ 114 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNR--GIDD-AKRLKEAIGYA 114 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEeccccc--CHHH-HHHHHHHHHhh
Confidence 4579999999999999999999988653 3344332110 1111 12233333322
Q ss_pred H-hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCC
Q psy5649 69 L-DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPS 147 (305)
Q Consensus 69 ~-~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~ 147 (305)
. .....|++|||+|.+. ......|+..++.. ...+++|.+|+....+...+++ |+ ..++++.++
T Consensus 115 p~~g~~kVIIIDEad~Lt---------~~a~naLLk~LEEP---~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs 179 (624)
T PRK14959 115 PMEGRYKVFIIDEAHMLT---------REAFNALLKTLEEP---PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLS 179 (624)
T ss_pred hhcCCceEEEEEChHhCC---------HHHHHHHHHHhhcc---CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCC
Confidence 2 2345699999999873 12234556665542 3456677778888888877777 65 578999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCC
Q psy5649 148 RDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF 181 (305)
Q Consensus 148 ~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~ 181 (305)
..+...++...+.+....++.+.++.++..+.|-
T Consensus 180 ~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 180 EAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 9999998888888778888998999999876653
No 276
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.37 E-value=6.9e-15 Score=119.11 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++... +.+.++++|...
T Consensus 121 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 121 YLDRLPEQLSGGQRQRVALA---------RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677789999999999999 9999999999999999999999999999999988654 566777887643
No 277
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.2e-14 Score=122.62 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+.++|......+.+.+.++... +.+.++++|..
T Consensus 136 ~~~~~~~~LS~G~~qrv~la---------ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 136 YIDSEPANLSGGQKQRVAIA---------GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 45677889999999999999 9999999999999999999999999999999888653 56677777754
No 278
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.37 E-value=2.6e-14 Score=116.69 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 130 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ILTKNIAELSGGEKQRISLI---------RNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 45666788999999999999 9999999999999999999999999999999987543 566777888643
No 279
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1e-14 Score=120.49 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+.....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+..+...+.+.++++|+.
T Consensus 130 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 130 LRDSMGQSLSGGERRRVEIA---------RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HhhcchhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 34555678999999999999 999999999999999999999999999999888765566777788864
No 280
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1e-14 Score=126.47 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 121 ~~~~~~~~LSgGq~qRvala---------raL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~ 190 (352)
T PRK11144 121 LLDRYPGSLSGGEKQRVAIG---------RALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD 190 (352)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 56677889999999999999 9999999999999999999999999999999888654 566778888654
No 281
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=3.3e-11 Score=105.30 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCe-----------------------EEEEecccccccccchHHHHHHHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVH-----------------------TVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~-----------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
+.+..+||+||+|+|||++++.+|+.+... +..+.+.. .......++.+++.
T Consensus 34 ~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~ 108 (394)
T PRK07940 34 GMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-----LSIGVDEVRELVTI 108 (394)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-----ccCCHHHHHHHHHH
Confidence 356789999999999999999999877543 12222211 11223456777776
Q ss_pred HHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+... ...|++|||+|.+... ..+.++..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.+
T Consensus 109 ~~~~p~~~~~kViiIDead~m~~~---------aanaLLk~LEep---~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f 173 (394)
T PRK07940 109 AARRPSTGRWRIVVIEDADRLTER---------AANALLKAVEEP---PPRTVWLLCAPSPEDVLPTIRS--RC-RHVAL 173 (394)
T ss_pred HHhCcccCCcEEEEEechhhcCHH---------HHHHHHHHhhcC---CCCCeEEEEECChHHChHHHHh--hC-eEEEC
Confidence 6542 3459999999987321 223455556542 3344455566668999999998 76 68999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLA 187 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~ 187 (305)
+.|+..+..+.+.. +. ..+.+....++..+.|..+..+.
T Consensus 174 ~~~~~~~i~~~L~~---~~--~~~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 174 RTPSVEAVAEVLVR---RD--GVDPETARRAARASQGHIGRARR 212 (394)
T ss_pred CCCCHHHHHHHHHH---hc--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99999987776652 11 25566777888888887765543
No 282
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=7.8e-15 Score=120.38 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+...+ +.+.++++|+..
T Consensus 122 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~ 191 (232)
T PRK10771 122 LLARLPGQLSGGQRQRVALA---------RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191 (232)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 56677889999999999999 9999999999999999999999999999999887543 567777887654
No 283
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.1e-14 Score=122.48 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++... +.+.++++|+.
T Consensus 133 ~~~~~~~~LS~G~~qrv~lA---------raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 133 FKTREPARLSGGQKQRVAVA---------GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45667789999999999999 9999999999999999999999999999999988654 66777787754
No 284
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.36 E-value=1.5e-14 Score=119.95 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|++++++.+ ++++.++..+++|||+++.|..+...+.+.+.+.... .+.++++|+..
T Consensus 137 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~ 204 (247)
T TIGR00972 137 RLHDSALGLSGGQQQRLCIA---------RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ 204 (247)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH
Confidence 34566789999999999999 9999999999999999999999999999999988653 56677888654
No 285
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.36 E-value=1.1e-14 Score=119.73 Aligned_cols=69 Identities=12% Similarity=0.019 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... .+.+.++++|+..
T Consensus 125 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 194 (236)
T TIGR03864 125 RADDKVRELNGGHRRRVEIA---------RALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD 194 (236)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 34566778999999999999 999999999999999999999999999999988753 3566777877653
No 286
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.36 E-value=1.3e-14 Score=120.48 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=58.9
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 138 ~~~~~~~LS~Gq~qrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~ 205 (250)
T PRK11264 138 ETSYPRRLSGGQQQRVAIA---------RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS 205 (250)
T ss_pred hhCChhhCChHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 4556778999999999999 9999999999999999999999999999999888655667777888643
No 287
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.5e-10 Score=101.58 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=107.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEec-------ccccccccchHHHHHHHHHHHHHh----CCCeEEEEcc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQV-------ADMFSKFYGEAEFRLKAAFDAALD----HAPSLLLLDN 80 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~-------~~~~~~~~~~~~~~l~~~~~~~~~----~~~~vl~ide 80 (305)
.+.+++||||+|+|||++++++++.+........+ .++. .........++.+++.+.. ..+.+++|||
T Consensus 38 ~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE 116 (367)
T PRK14970 38 LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116 (367)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeC
Confidence 34579999999999999999999987542111000 0000 0111223556667766543 2346999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 81 LDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 81 ~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
+|.+.. .....+...++.. ....++|.+++....+.+.+++ |+ ..++++.|+..+...++...+.
T Consensus 117 ~~~l~~---------~~~~~ll~~le~~---~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 117 VHMLSS---------AAFNAFLKTLEEP---PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred hhhcCH---------HHHHHHHHHHhCC---CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHH
Confidence 986631 1234455555432 3334556667777888888877 54 4689999999999988888888
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
+.+..++.+.++.++..+.| +.+.+...+..
T Consensus 182 ~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 182 KEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred HcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 88888999899999977554 44444444443
No 288
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.36 E-value=9.4e-15 Score=124.27 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=58.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+.+.|+.+.+.+.+.+..++. ..+.++.+|...
T Consensus 126 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~ 193 (301)
T TIGR03522 126 EQHKKIGQLSKGYRQRVGLA---------QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ 193 (301)
T ss_pred HhcCchhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 34556678999999999999 999999999999999999999999999999999865 566777888654
No 289
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.36 E-value=1e-10 Score=100.84 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=96.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcC-----CeEEEEecccccccccchHHHHHHHHHHHH-Hh-CCCeEEEEcccccccC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMK-----VHTVVIQVADMFSKFYGEAEFRLKAAFDAA-LD-HAPSLLLLDNLDVLCT 86 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~vl~ide~d~l~~ 86 (305)
.+++|+||+||||||+++.+++++. ..++.+++++..+ .......+....... .. ..+.+++|||+|.+..
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS 116 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH
Confidence 3589999999999999999999873 2344444432211 011112222221111 01 2356999999987732
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
. ....+...++... ....+|.+++....+...+.+ |+ ..++++.++..+...+++..+++.+..+
T Consensus 117 ~---------~~~~L~~~le~~~---~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 117 D---------AQQALRRTMEMYS---QNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred H---------HHHHHHHHHhcCC---CCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1 1223444444332 223455566777777777776 55 3589999999999999998888888889
Q ss_pred CHHhHHHHHHHcCC
Q psy5649 167 STDQIQQVAFITHG 180 (305)
Q Consensus 167 s~~~~~~la~~t~g 180 (305)
+.+.++.++..+.|
T Consensus 182 ~~~al~~l~~~~~g 195 (319)
T PRK00440 182 TDDALEAIYYVSEG 195 (319)
T ss_pred CHHHHHHHHHHcCC
Confidence 99999999987655
No 290
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.36 E-value=1.1e-13 Score=114.07 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++....+|+|++++++.+ ++++.++..+++|||++.+|......+.+.+.++... +.+.++++|+..
T Consensus 108 ~~~~~~~~LSgGe~qrv~ia---------raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~ 177 (246)
T cd03237 108 ILDREVPELSGGELQRVAIA---------ACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDII 177 (246)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667788999999999999 9999999999999999999999999999999888543 567778888643
No 291
>KOG2004|consensus
Probab=99.36 E-value=5.9e-12 Score=112.98 Aligned_cols=147 Identities=22% Similarity=0.318 Sum_probs=108.5
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc---------ccccchHHHHHHHHHHHHHhCCCeEEEEcc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF---------SKFYGEAEFRLKAAFDAALDHAPSLLLLDN 80 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~vl~ide 80 (305)
--.|..+.|+||||.|||++++.||..++..|+.++...+. ..|.|....++-+.+..+....| +++|||
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDE 513 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDE 513 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeeh
Confidence 34677889999999999999999999999999998865442 23667777777777777777777 668999
Q ss_pred cccccCCCCCchhHHHHHHHHH-----HHHhhhcc---cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHH
Q psy5649 81 LDVLCTGRNRSDQERRLLSCLV-----TQVDRLHE---LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRA 152 (305)
Q Consensus 81 ~d~l~~~~~~~~~~~~~~~~l~-----~~~~~~~~---~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~ 152 (305)
+|.+..+ ...+.....+..+- .+++.+.+ .-+.|++|+|+|..+.|++.|+- |+ +.|+++=...++.+
T Consensus 514 vDKlG~g-~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv 589 (906)
T KOG2004|consen 514 VDKLGSG-HQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKV 589 (906)
T ss_pred hhhhCCC-CCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHH
Confidence 9998732 22233322222111 11111111 13779999999999999999988 77 78999999999999
Q ss_pred HHHHHHHhc
Q psy5649 153 AILHCLLTK 161 (305)
Q Consensus 153 ~i~~~~l~~ 161 (305)
.|.+.++-.
T Consensus 590 ~IA~~yLip 598 (906)
T KOG2004|consen 590 KIAERYLIP 598 (906)
T ss_pred HHHHHhhhh
Confidence 998877643
No 292
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=4.9e-11 Score=104.35 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=109.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+|||++++.++..+... +.++++.. ......++.+++.+
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 109 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNV 109 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHH
Confidence 4568999999999999999999887432 33333321 11233456666665
Q ss_pred HhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
... ...|++|||+|.+.. .....++..++.. ...+++|.+++.++.+.+.+++ |+ ..++++
T Consensus 110 ~~~p~~~~~~vviidea~~l~~---------~~~~~Ll~~le~~---~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~ 174 (355)
T TIGR02397 110 KYAPSSGKYKVYIIDEVHMLSK---------SAFNALLKTLEEP---PEHVVFILATTEPHKIPATILS--RC-QRFDFK 174 (355)
T ss_pred hcCcccCCceEEEEeChhhcCH---------HHHHHHHHHHhCC---ccceeEEEEeCCHHHHHHHHHh--he-eEEEcC
Confidence 432 335999999987631 1233455555432 3455666777777777778877 65 578999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.|+..+...++...+++.+..++.+.++.++..+.| +++.+...+.+.
T Consensus 175 ~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl 222 (355)
T TIGR02397 175 RIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQL 222 (355)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 999999999999888888888898889999987665 444444444443
No 293
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=3.8e-14 Score=113.58 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=61.1
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
.++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+.+..+.+.++++|+...++
T Consensus 121 ~~~~~~~LS~G~~~rv~la---------ral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 121 IDYPCGLLSSGQKRQVALL---------RLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred hhCChhhcCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 3445568999999999999 9999999999999999999999999999999987555667778888766554
Q ss_pred c
Q psy5649 239 D 239 (305)
Q Consensus 239 ~ 239 (305)
.
T Consensus 192 ~ 192 (200)
T PRK13540 192 K 192 (200)
T ss_pred c
Confidence 3
No 294
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=9e-11 Score=106.07 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=106.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..++|+||+|+||||+++.+|+.+.. ++++++.... .....++.+.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~ 111 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNI 111 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHH
Confidence 345899999999999999999998764 2333332111 1112334444443
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. .+.+.+|.+|+....+.+.+++ |. ..+++.
T Consensus 112 ~~~p~~g~~kViIIDEa~~ls~---------~a~naLLK~LEep---p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~ 176 (546)
T PRK14957 112 QYMPSQGRYKVYLIDEVHMLSK---------QSFNALLKTLEEP---PEYVKFILATTDYHKIPVTILS--RC-IQLHLK 176 (546)
T ss_pred HhhhhcCCcEEEEEechhhccH---------HHHHHHHHHHhcC---CCCceEEEEECChhhhhhhHHH--he-eeEEeC
Confidence 32 3456999999987631 2334566666642 3455566677778888877877 55 788999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.++..+....+...+++.+...+.+.++.++..+.| +.+++..++..+
T Consensus 177 ~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~ 224 (546)
T PRK14957 177 HISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQA 224 (546)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999888888888877788888888888877654 444444444443
No 295
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=3.2e-14 Score=114.61 Aligned_cols=70 Identities=16% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..+.....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|....
T Consensus 120 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 120 LAHLPFGYLSAGQKRRVALA---------RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred HHcCChhhcCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 44556678999999999999 99999999999999999999999999999999875556677788886543
No 296
>KOG0058|consensus
Probab=99.36 E-value=2.4e-13 Score=122.61 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=112.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.|+||+|+||||++..|-+...+..+.| .+|+.|.-
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I--------------------------------llDG~~i~-- 533 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI--------------------------------LLDGVPIS-- 533 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE--------------------------------EECCeehh--
Confidence 36779999999999999999999999999888777666 77777641
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH-----HHHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL-----HCLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~-----~~~l~~ 161 (305)
+-+...+...+..+. |.++ +..++..++|...+.. ++.++-..-. +.+..+
T Consensus 534 -----~~~~~~lr~~Ig~V~-----QEPv--LFs~sI~eNI~YG~~~------------~t~e~i~~AAk~ANah~FI~~ 589 (716)
T KOG0058|consen 534 -----DINHKYLRRKIGLVG-----QEPV--LFSGSIRENIAYGLDN------------ATDEEIEAAAKMANAHEFITN 589 (716)
T ss_pred -----hcCHHHHHHHeeeee-----ccce--eecccHHHHHhcCCCC------------CCHHHHHHHHHHhChHHHHHh
Confidence 112222333333333 4444 4455777777665442 2222222111 112222
Q ss_pred -----------CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhc
Q psy5649 162 -----------VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLV 230 (305)
Q Consensus 162 -----------~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (305)
.+.++|+||.||+|++ ++|+++|..+++||.++.+|..+...+.+++.+.... .+.+++
T Consensus 590 ~p~gY~T~VGEkG~qLSGGQKQRIAIA---------RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvI 659 (716)
T KOG0058|consen 590 FPDGYNTVVGEKGSQLSGGQKQRIAIA---------RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVI 659 (716)
T ss_pred CccccccccCCccccccchHHHHHHHH---------HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEE
Confidence 3457999999999999 9999999999999999999999999999999877654 566666
Q ss_pred cCCC
Q psy5649 231 EVPN 234 (305)
Q Consensus 231 ~~~~ 234 (305)
.|..
T Consensus 660 AHRL 663 (716)
T KOG0058|consen 660 AHRL 663 (716)
T ss_pred ehhh
Confidence 6643
No 297
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.36 E-value=6.5e-15 Score=123.29 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=58.3
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+..+..+|+|+.++++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 143 ~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~ 211 (267)
T PRK15112 143 ASYYPHMLAPGQKQRLGLA---------RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211 (267)
T ss_pred HhcCchhcCHHHHHHHHHH---------HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 4455678999999999999 9999999999999999999999999999999988653 566777888653
No 298
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.36 E-value=8.1e-15 Score=120.47 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
..+.....+|+|+.++++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|....
T Consensus 146 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 146 LLDTPVRQLSLGQRMRAEIA---------AALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 34555678999999999999 9999999999999999999999999999999988543 5677778886543
No 299
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=1.6e-14 Score=119.22 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+..+... +.+.++++|+..
T Consensus 124 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~ 193 (241)
T PRK14250 124 YATRDVKNLSGGEAQRVSIA---------RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME 193 (241)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 44566788999999999999 9999999999999999999999999999999987653 567778888654
No 300
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.35 E-value=4e-13 Score=107.54 Aligned_cols=69 Identities=16% Similarity=0.029 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|...
T Consensus 120 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 120 FEDLPAAQLSAGQQRRLALA---------RLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HhcCChhhcCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 44566778999999999999 9999999999999999999999999999999987555667778888654
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.35 E-value=2.6e-13 Score=104.93 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=54.1
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+|+++.++++.+ ++++.++..+++|||+...|..+.+.+.+.++++...+.+.++++|+..
T Consensus 83 LS~G~~qrl~la---------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 83 LSVGERQMVEIA---------RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred cCHHHHHHHHHH---------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999 9999999999999999999999999999999988655667777887643
No 302
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=8.6e-15 Score=120.31 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++..+ +.+.++++|...
T Consensus 122 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~ 191 (235)
T cd03299 122 LLNRKPETLSGGEQQRVAIA---------RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191 (235)
T ss_pred HHhcCcccCCHHHHHHHHHH---------HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 45667788999999999999 9999999999999999999999999999999987553 567777877543
No 303
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.35 E-value=2.5e-13 Score=105.71 Aligned_cols=60 Identities=28% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCch-hhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSA-MRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ 234 (305)
+|+++.++++.+ ++++.++..+++|||++..|....+.+.+.+.+..... .+.++++|+.
T Consensus 72 LSgGq~qrv~la---------ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 72 LSGGELQRVAIA---------AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred CCHHHHHHHHHH---------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 999999999999 99999999999999999999999999999998875543 5677788864
No 304
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.35 E-value=2.2e-14 Score=117.47 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|......+.+.+.+.... +.+.++++|+..
T Consensus 107 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 176 (230)
T TIGR01184 107 AADKRPGQLSGGMKQRVAIA---------RALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176 (230)
T ss_pred HHcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999887554 567778888653
No 305
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.35 E-value=8.7e-14 Score=113.39 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.+....+.+.++++|+..
T Consensus 135 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 135 FIDLPVKTYSSGMKARLAFA---------IATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34455678999999999999 9999999999999999999999999999999887655566777888643
No 306
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=7.7e-11 Score=107.13 Aligned_cols=160 Identities=18% Similarity=0.255 Sum_probs=109.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++.+|..+++. +++++++. ......++.+.+.+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~ 111 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNA 111 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHH
Confidence 4457999999999999999999988653 22222211 12234566666655
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. ...+.++..++.. ...+.+|.+|+.++.+.+.+++ |. ..++++
T Consensus 112 ~~~p~~~~~kVvIIDEad~ls~---------~a~naLLK~LEep---p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~ 176 (527)
T PRK14969 112 QYAPTRGRFKVYIIDEVHMLSK---------SAFNAMLKTLEEP---PEHVKFILATTDPQKIPVTVLS--RC-LQFNLK 176 (527)
T ss_pred hhCcccCCceEEEEcCcccCCH---------HHHHHHHHHHhCC---CCCEEEEEEeCChhhCchhHHH--HH-HHHhcC
Confidence 43 2345999999997632 2234455666542 3456667777778888777776 55 678899
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+-...+...+.+.+...+...++.++..+.| +.+++..++.++.
T Consensus 177 ~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai 225 (527)
T PRK14969 177 QMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAI 225 (527)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999998888788777777888888888877655 4555555655543
No 307
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.35 E-value=1.1e-14 Score=121.06 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+..
T Consensus 139 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 208 (252)
T TIGR03005 139 KADHMPAQLSGGQQQRVAIA---------RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG 208 (252)
T ss_pred HhhcChhhcCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999987654 667778888653
No 308
>KOG0055|consensus
Probab=99.35 E-value=1.8e-13 Score=130.34 Aligned_cols=170 Identities=24% Similarity=0.235 Sum_probs=107.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.|+||+||||||+++.|.+..++..+.| +||+.|.--
T Consensus 373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V--------------------------------~idG~di~~- 419 (1228)
T KOG0055|consen 373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV--------------------------------LIDGEDIRN- 419 (1228)
T ss_pred EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE--------------------------------EEcCccchh-
Confidence 46789999999999999999999999999999988887 677655311
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEE-c-cCCCHHHH-HHHHH---HHHh
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIE-L-PVPSRDQR-AAILH---CLLT 160 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~-~-~~p~~~~r-~~i~~---~~l~ 160 (305)
.....+..-+..+. |.| ++..++..+++...-....+ .+++ . +.-+..+. ..+.+ ....
T Consensus 420 ------~~~~~lr~~iglV~-----QeP--vlF~~tI~eNI~~G~~dat~--~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 420 ------LNLKWLRSQIGLVS-----QEP--VLFATTIRENIRYGKPDATR--EEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ------cchHHHHhhcCeee-----ech--hhhcccHHHHHhcCCCcccH--HHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 11111111122222 333 23344555555332211000 0000 0 00001111 11111 0111
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+.+||+|+.||+|.+ ++++++|..+++||+++.+|..+...+.+++++..... +.+++.|+.
T Consensus 485 e~g~qLSGGQKQRIAIA---------Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~gr-TTivVaHRL 548 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIA---------RALVRNPKILLLDEATSALDAESERVVQEALDKASKGR-TTIVVAHRL 548 (1228)
T ss_pred CCCCCCChHHHHHHHHH---------HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCC-eEEEEeeeh
Confidence 23567999999999999 99999999999999999999999999999998886643 556666654
No 309
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=7.9e-13 Score=106.30 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=111.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
+..+......|.|++|+||||+++.+|+.+.++-+.|....-. +.|---.++
T Consensus 19 ~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~--------------------------L~Ds~k~i~-- 70 (352)
T COG4148 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV--------------------------LVDAEKGIF-- 70 (352)
T ss_pred ccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEE--------------------------eecccCCcc--
Confidence 4455556789999999999999999999999887766432210 111100010
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH--HHHHhcCCCC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL--HCLLTKVPHS 165 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~--~~~l~~~~~~ 165 (305)
-...++.+...++... ++.-.++..++.+..... ...+.++-.+++ .++++++|..
T Consensus 71 ---lp~~~RriGYVFQDAR----------LFpH~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~ 128 (352)
T COG4148 71 ---LPPEKRRIGYVFQDAR----------LFPHYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT 128 (352)
T ss_pred ---cChhhheeeeEeeccc----------cccceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc
Confidence 1223333333332222 222234445554433221 222344444443 5689999999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
+|+|+.|++|+. ++|+..+..+++|||-+.+|.....+++-.++++... +.-.+.++|..
T Consensus 129 LSGGEkQRVAIG---------RALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~ 189 (352)
T COG4148 129 LSGGEKQRVAIG---------RALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189 (352)
T ss_pred cCcchhhHHHHH---------HHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH
Confidence 999999999999 9999999999999999999999999999999988654 34445577754
No 310
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.34 E-value=1.6e-13 Score=107.28 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=53.9
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+|+|+.++++.+ ++++.++..+++|||+...|..+...+.+.+.+....+.+.++++|+.
T Consensus 97 LS~G~~qrv~la---------~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 97 LSGGQRQRLGLA---------RALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred cCHHHHHHHHHH---------HHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999999 999999999999999999999999999999998865566777788864
No 311
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.34 E-value=2.3e-14 Score=119.30 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=57.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHH------HHHHHHhhhhcCCCccccHHHHHHHhhhcC-Cchhhhhhc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLS------NATSALLVETEGTGQVLSYDGVMRALDHVK-PSAMRQVLV 230 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 230 (305)
..++....+|+|+.++++.+ ++++. ++..+++|||++++|..+.+.+.+.+.++. ..+.+.+++
T Consensus 127 ~~~~~~~~LSgGe~qrv~la---------~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 197 (258)
T PRK13548 127 LAGRDYPQLSGGEQQRVQLA---------RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVV 197 (258)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45667789999999999998 88884 788889999999999999999999999876 445677778
Q ss_pred cCCCC
Q psy5649 231 EVPNV 235 (305)
Q Consensus 231 ~~~~~ 235 (305)
+|+..
T Consensus 198 sH~~~ 202 (258)
T PRK13548 198 LHDLN 202 (258)
T ss_pred ECCHH
Confidence 88653
No 312
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=1.4e-11 Score=103.57 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=90.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccccc--ccchHHH---------HH-HHHHHHHHhCCCeEEEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK--FYGEAEF---------RL-KAAFDAALDHAPSLLLL 78 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~--~~~~~~~---------~l-~~~~~~~~~~~~~vl~i 78 (305)
..+.+++|.|||||||||+++.+|..++.+++.|+++..... ..|.... .+ ...+..|. ..++++++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 457789999999999999999999999999999987665433 2222111 10 01222332 45688999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhh-----hcc------cCCeEEEEEEecCCC------------CCCccccCCC
Q psy5649 79 DNLDVLCTGRNRSDQERRLLSCLVTQVDR-----LHE------LQACVVLLAVTTSLD------------NVDVSLRTPG 135 (305)
Q Consensus 79 de~d~l~~~~~~~~~~~~~~~~l~~~~~~-----~~~------~~~~~~~i~~t~~~~------------~l~~~l~~~~ 135 (305)
||+|..-+ .....+...++. +.+ ..+.+.+|+|.|..+ .++.+...
T Consensus 141 DEin~a~p---------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 141 DEYDAGRP---------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred chhhccCH---------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 99997522 122222233331 111 124678999999855 34566666
Q ss_pred CcceEEEccCCCHHHHHHHHHHH
Q psy5649 136 RLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 136 r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
||...+.+..|+.++..+|+...
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhh
Confidence 88778899999999999998754
No 313
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.4e-14 Score=119.83 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+.++|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 140 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~ 209 (265)
T PRK10575 140 LAHRLVDSLSGGERQRAWIA---------MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 (265)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999988644 566777888654
No 314
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=3.4e-14 Score=118.24 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.+..+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 131 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 131 LADRRLTDLSGGQRQRAFLA---------MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45667789999999999999 9999999999999999999999999999999887655667777888654
No 315
>CHL00176 ftsH cell division protein; Validated
Probab=99.34 E-value=1.7e-12 Score=119.59 Aligned_cols=71 Identities=41% Similarity=0.806 Sum_probs=65.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....|+|++|++++++.+.+.+.+ ++.++.|..++...++|+||+||||||||++|+++|++++.+|+.++
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 457899999999999999998775 67788899999999999999999999999999999999999999874
No 316
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.34 E-value=6.8e-14 Score=116.66 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+...... +.+.++++|+..
T Consensus 144 ~~~~~~~~LS~Gq~qrl~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~ 213 (258)
T PRK11701 144 RIDDLPTTFSGGMQQRLQIA---------RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred HHhCCCccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 44566788999999999999 9999999999999999999999999999999887553 567777888654
No 317
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=4.9e-13 Score=106.72 Aligned_cols=71 Identities=20% Similarity=0.010 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+......+.+.++++|....+
T Consensus 116 ~~~~~~~~LS~G~~~rl~la---------~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 116 LLDEKCYSLSSGMQKIVAIA---------RLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred hhccChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 34556778999999999999 999999999999999999999999999999876544556777788876543
No 318
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.34 E-value=1.4e-13 Score=126.62 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=54.0
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (305)
.+..+|+||+||++.+ +++++++..+++||+++..|..+.+.+.+.+.+..+ +.+.++++|+
T Consensus 467 ~G~~LSGGQrQRiaiA---------Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~-~~TvIiItHr 528 (529)
T TIGR02868 467 GGARLSGGERQRLALA---------RALLADAPILLLDEPTEHLDAGTESELLEDLLAALS-GKTVVVITHH 528 (529)
T ss_pred ccCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 4567999999999999 999999999999999999999999999999987644 3566777775
No 319
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.34 E-value=9.4e-15 Score=126.81 Aligned_cols=69 Identities=17% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+.++|+|+.|+++.+ ++++.++..+++|||++.+|+....++.+.+.++... +.+.++++|+..
T Consensus 157 ~~~~~~~~LSgGq~QRV~LA---------RALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 157 WADKKPGELSGGMQQRVGLA---------RAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45567788999999999999 9999999999999999999999999999999888654 667788888654
No 320
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=4.8e-11 Score=106.46 Aligned_cols=192 Identities=14% Similarity=0.170 Sum_probs=117.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHH---HHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEF---RLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
+.++|+|++|+|||+|++++++++ +..++++++.++.......... .+..+.+. -....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 468999999999999999999865 3567788877665443322211 11111111 1345699999999764
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCC---CCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHh
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN---VDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
... .. ...++..++...+.+. .+++.+...++. +++.+++ ||. ..+.+..|+.++|.++++..++
T Consensus 220 ~k~----~~---~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~ 289 (450)
T PRK14087 220 YKE----KT---NEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIK 289 (450)
T ss_pred CCH----HH---HHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHH
Confidence 221 11 2233344443333233 233333333333 4566666 664 5678999999999999998887
Q ss_pred cCCC--CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 161 KVPH--SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 161 ~~~~--~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
..+. .++++.++.++....| +++.+..++.+......... ....++.+.+.++++.+
T Consensus 290 ~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~--~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 290 NQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP--EEKIITIEIVSDLFRDI 348 (450)
T ss_pred hcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc--CCCCCCHHHHHHHHhhc
Confidence 6543 6889899999987665 55566666666543332210 01345666666666654
No 321
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.8e-14 Score=121.30 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=61.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++++.++|+|+.|+++.+ ++++.++..+++|||++.+|......+.+.+.++... +.+.++++|+..
T Consensus 151 ~~~~~p~~LSgG~~QRv~iA---------rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~ 220 (330)
T PRK15093 151 AMRSFPYELTEGECQKVMIA---------IALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ 220 (330)
T ss_pred HHhCCchhCCHHHHHHHHHH---------HHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 45677889999999999999 9999999999999999999999999999999998764 677888888754
No 322
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=4.2e-13 Score=104.94 Aligned_cols=61 Identities=20% Similarity=0.092 Sum_probs=54.3
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+|+|+.++++.+ ++++.++..+++|||+...|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 96 LS~G~~qrv~la---------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 96 LSGGMKQRLALA---------QALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCHHHHHHHHHH---------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 999999999999 9999999999999999999999999999999988655566777888653
No 323
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.33 E-value=4.2e-13 Score=105.47 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
...+|++++++++.+ ++++.++..+++|||++.+|..+.+.+.+.+.+... +.+.++++|+.
T Consensus 96 ~~~LS~G~~qrv~la---------ral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 157 (178)
T cd03247 96 GRRFSGGERQRLALA---------RILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHL 157 (178)
T ss_pred cccCCHHHHHHHHHH---------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 567999999999999 999999999999999999999999999999988853 56667777754
No 324
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=5.4e-11 Score=99.13 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=87.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccc------cccccchHHH-HHHHH-------------------
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM------FSKFYGEAEF-RLKAA------------------- 64 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~------~~~~~~~~~~-~l~~~------------------- 64 (305)
..+..++|.||+|||||++++++|..++.++..++|+.- .+.+.+.... .+...
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR 98 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch
Confidence 456789999999999999999999999999999987542 2222111111 11111
Q ss_pred HHHHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh----cc---------cCCeEEEEEEecCCC-----C
Q psy5649 65 FDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL----HE---------LQACVVLLAVTTSLD-----N 126 (305)
Q Consensus 65 ~~~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~----~~---------~~~~~~~i~~t~~~~-----~ 126 (305)
+..|. ....+++|||++.+-+ .....|...++.- ++ ..+++.+|+|+|... +
T Consensus 99 l~~A~-~~g~~lllDEi~r~~~---------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 99 LTLAV-REGFTLVYDEFTRSKP---------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHHH-HcCCEEEEcchhhCCH---------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 11111 2346999999997421 1223344444321 10 123567899999752 5
Q ss_pred CCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 127 l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
++.++.+ || ..+.++.|+.++..+|+...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHh
Confidence 5777877 77 67899999999999998754
No 325
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.33 E-value=4e-13 Score=124.81 Aligned_cols=161 Identities=21% Similarity=0.208 Sum_probs=103.7
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.++|++|||||||+|.+.+...+..+.+ .+|+.|.=
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I--------------------------------~~dg~dl~-- 538 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI--------------------------------LLDGVDLN-- 538 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE--------------------------------EECCEeHH--
Confidence 47789999999999999999999999999988887777 56666531
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH-----HHHHh-
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL-----HCLLT- 160 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~-----~~~l~- 160 (305)
+-+...+...+..+. |+..++ .-+..+++.. .-|..+.++..+.. +.+..
T Consensus 539 -----~i~~~~lR~~ig~V~-----Q~~~Lf--~gSI~eNi~l------------~~p~~~~e~i~~A~~~ag~~~fI~~ 594 (709)
T COG2274 539 -----DIDLASLRRQVGYVL-----QDPFLF--SGSIRENIAL------------GNPEATDEEIIEAAQLAGAHEFIEN 594 (709)
T ss_pred -----hcCHHHHHhheeEEc-----ccchhh--cCcHHHHHhc------------CCCCCCHHHHHHHHHHhCcHHHHHh
Confidence 111111111111111 111111 1111122111 11111212222211 11222
Q ss_pred ----------cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhc
Q psy5649 161 ----------KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLV 230 (305)
Q Consensus 161 ----------~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (305)
..+..+|+||+|+++.+ ++++.+|..+++||++++.|..+.+.+.+.+.+.... .+.+++
T Consensus 595 lP~gy~t~v~E~G~~LSGGQrQrlalA---------RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-~T~I~I 664 (709)
T COG2274 595 LPMGYDTPVGEGGANLSGGQRQRLALA---------RALLSKPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIII 664 (709)
T ss_pred cccccccccccCCCCCCHHHHHHHHHH---------HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-CeEEEE
Confidence 23556999999999999 9999999999999999999999999999999988764 566677
Q ss_pred cCCCC
Q psy5649 231 EVPNV 235 (305)
Q Consensus 231 ~~~~~ 235 (305)
+|...
T Consensus 665 aHRl~ 669 (709)
T COG2274 665 AHRLS 669 (709)
T ss_pred Eccch
Confidence 77554
No 326
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.33 E-value=8.6e-15 Score=136.32 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=61.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++.+.++|+|++|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 456 ~~~~~~~~LSgGqrQRv~iA---------raL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 456 HAWRYPHEFSGGQRQRICIA---------RALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677889999999999999 9999999999999999999999999999999988654 667888888754
No 327
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=3.9e-14 Score=117.90 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+++. +.+.++++|+..
T Consensus 143 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~ 210 (254)
T PRK14273 143 KLNTNALSLSGGQQQRLCIA---------RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ 210 (254)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 45666789999999999999 999999999999999999999999999999999864 456677888654
No 328
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=1.3e-10 Score=104.39 Aligned_cols=160 Identities=19% Similarity=0.278 Sum_probs=106.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++.+|..+++. +++++.+. ......++.+.+.+
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~ 111 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAV 111 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHH
Confidence 4457899999999999999999987631 22222211 11122344444443
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++.. ...+++|.+|+..+.+.+.+.+ |+ ..+.++
T Consensus 112 ~~~P~~~~~KVvIIDEad~Lt~---------~a~naLLk~LEep---p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~ 176 (486)
T PRK14953 112 SYTPIKGKYKVYIIDEAHMLTK---------EAFNALLKTLEEP---PPRTIFILCTTEYDKIPPTILS--RC-QRFIFS 176 (486)
T ss_pred HhCcccCCeeEEEEEChhhcCH---------HHHHHHHHHHhcC---CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcC
Confidence 32 3456999999997631 1233455555532 3345556666777778777777 55 478999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+....+...++..+..++.+.++.++..+.| +.+++..++..+.
T Consensus 177 ~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 177 KPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999999888888888888889999977664 3455555555543
No 329
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.4e-13 Score=116.34 Aligned_cols=69 Identities=19% Similarity=0.089 Sum_probs=57.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.+..-+..+|+|+.+|+|.+ +.+++++..+++|||+.++|+.+.+++.+.+..... +.+.++++|....
T Consensus 467 ~lge~G~~LSGGE~rRLAlA---------R~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~ 535 (573)
T COG4987 467 WLGEGGRRLSGGERRRLALA---------RALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG 535 (573)
T ss_pred hhccCCCcCCchHHHHHHHH---------HHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc
Confidence 34445678999999999999 999999999999999999999999999888766544 5677888886543
No 330
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.2e-14 Score=117.77 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=59.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++..+ +.+.++++|+..
T Consensus 124 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 124 LLNRYPAQLSGGEKQRVALA---------RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred HhhcCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 45566788999999999999 9999999999999999999999999999999888654 566777888643
No 331
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.32 E-value=3.9e-14 Score=117.19 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=57.8
Q ss_pred HhcCCC-CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPH-SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~-~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++... .+|+|++++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 137 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 137 LNRSVNEGFSGGEKKRNEIL---------QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred cccccccCcCHHHHHHHHHH---------HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 344444 4999999999999 9999999999999999999999999999999988655567778888643
No 332
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.32 E-value=5.3e-13 Score=105.25 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=54.2
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+|+++.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 105 LS~G~~qrl~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 105 LSGGNQQKVVLA---------RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCHHHHHHHHHH---------HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 999999999999 9999999999999999999999999999999988655567777888653
No 333
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.32 E-value=6.6e-14 Score=116.16 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.+... .+.+.++++|+..
T Consensus 126 ~~~~~~~~LSgGqkqrl~la---------raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 126 RANEWPAALSGGQKQRVALA---------RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45666788999999999999 999999999999999999999999999999988743 3566777888653
No 334
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=2.4e-14 Score=117.48 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++... +.+.++++|...
T Consensus 123 ~~~~~~~~lS~G~~qrl~la---------ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 123 YANRKPSQLSGGQQQRVAIA---------RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45666788999999999999 9999999999999999999999999999999988654 567777777543
No 335
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.32 E-value=1.9e-13 Score=118.29 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=107.6
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
+|.+++|+.+.++||+|+|||||+|.+.+...+..+.| .+|..|.-
T Consensus 356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V--------------------------------RLDga~l~-- 401 (580)
T COG4618 356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV--------------------------------RLDGADLR-- 401 (580)
T ss_pred eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE--------------------------------Eecchhhh--
Confidence 46778999999999999999999999999887766555 55655531
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc-CCCHHHHHHHHHHHHhc----
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP-VPSRDQRAAILHCLLTK---- 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~-~p~~~~r~~i~~~~l~~---- 161 (305)
..+++.+...+.++-+.-+ ++ .-+..+++. ||+.+.+-. +-+.....+. +.+.-+
T Consensus 402 -----qWd~e~lG~hiGYLPQdVe------LF-~GTIaeNIa-------Rf~~~~d~~kIieAA~lAgv-HelIl~lP~G 461 (580)
T COG4618 402 -----QWDREQLGRHIGYLPQDVE------LF-DGTIAENIA-------RFGEEADPEKVIEAARLAGV-HELILRLPQG 461 (580)
T ss_pred -----cCCHHHhccccCcCcccce------ec-CCcHHHHHH-------hccccCCHHHHHHHHHHcCh-HHHHHhCcCC
Confidence 1122223222222221000 11 112222221 554322211 1111111111 111111
Q ss_pred -------CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 -------VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 -------~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
-+..+|+||.|+++.+ +++..++....+|||.+++|......+.+++...+..+.+.++++|..
T Consensus 462 YdT~iG~~G~~LSgGQRQRIaLA---------RAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 462 YDTRIGEGGATLSGGQRQRIALA---------RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred ccCccCCCCCCCCchHHHHHHHH---------HHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 2346999999999999 999999999999999999999999999999999999988888888865
Q ss_pred C
Q psy5649 235 V 235 (305)
Q Consensus 235 ~ 235 (305)
.
T Consensus 533 s 533 (580)
T COG4618 533 S 533 (580)
T ss_pred H
Confidence 4
No 336
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.8e-13 Score=118.83 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=103.8
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++.+.|+|++||||||+++.|++.+.+..+++.. ++.+.-
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~v--------------------------------ng~~l~-- 386 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV--------------------------------NGIDLR-- 386 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEE--------------------------------CCcccc--
Confidence 4678999999999999999999999999999887776633 222210
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh------
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT------ 160 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~------ 160 (305)
+ ........-+.++. |++.++ ..+..+++-.+ ++..-+ -......++.++.+ +.+
T Consensus 387 --~---l~~~~~~k~i~~v~-----Q~p~lf--~gTireNi~l~--~~~~s~----e~i~~al~~a~l~~-~v~~p~GLd 447 (559)
T COG4988 387 --D---LSPEAWRKQISWVS-----QNPYLF--AGTIRENILLA--RPDASD----EEIIAALDQAGLLE-FVPKPDGLD 447 (559)
T ss_pred --c---cCHHHHHhHeeeeC-----CCCccc--cccHHHHhhcc--CCcCCH----HHHHHHHHHhcHHH-hhcCCCccc
Confidence 0 00000111111111 222211 11222222110 000000 01112233444333 233
Q ss_pred ----cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 161 ----KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 161 ----~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+..+|+||.||++.+ ++++..+..+++|||+++.|..+.+.+.+.+.+..+. .+.++++|+..
T Consensus 448 t~ige~G~~LSgGQ~QRlaLA---------RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~ 516 (559)
T COG4988 448 TVIGEGGAGLSGGQAQRLALA---------RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE 516 (559)
T ss_pred chhccCCCCCCHHHHHHHHHH---------HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH
Confidence 23456999999999999 9999999999999999999999999999999988765 67788888654
No 337
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.32 E-value=4.4e-14 Score=121.24 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=60.3
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+++++.++|+|+.|+++.+ ++++.++..+++|||++.+|..+..++.+.+.+++.. +.+.++++|+..
T Consensus 155 ~~~~p~~LSgG~~QRv~IA---------rAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~ 223 (330)
T PRK09473 155 MKMYPHEFSGGMRQRVMIA---------MALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG 223 (330)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 4567889999999999999 9999999999999999999999999999999988654 667788888754
No 338
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.3e-10 Score=105.98 Aligned_cols=158 Identities=17% Similarity=0.196 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe--------------------------EEEEecccccccccchHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH--------------------------TVVIQVADMFSKFYGEAEFRLKAAFD 66 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~--------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~ 66 (305)
+..+||+||+||||||+++++|+.+++. +++++++.. .....++++.+
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~ 108 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRD 108 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHH
Confidence 3357999999999999999999987642 222322111 11233444433
Q ss_pred HHH----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEE
Q psy5649 67 AAL----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIE 142 (305)
Q Consensus 67 ~~~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~ 142 (305)
.+. .....|++|||+|.+.. .....|+..++.. ...+++|.+|+..+.+.+.+++ |. ..++
T Consensus 109 ~~~~~P~~~~~KVvIIDEah~Lt~---------~A~NALLK~LEEp---p~~~~fIL~tte~~kll~TI~S--Rc-~~~~ 173 (584)
T PRK14952 109 RAFYAPAQSRYRIFIVDEAHMVTT---------AGFNALLKIVEEP---PEHLIFIFATTEPEKVLPTIRS--RT-HHYP 173 (584)
T ss_pred HHHhhhhcCCceEEEEECCCcCCH---------HHHHHHHHHHhcC---CCCeEEEEEeCChHhhHHHHHH--hc-eEEE
Confidence 332 23345999999998732 1334556666543 4456677777888888888888 54 6789
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
|..++..+....+...+++.+..++.+.++.++..+.| +.+++..++..
T Consensus 174 F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~aln~Ldq 222 (584)
T PRK14952 174 FRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDTLSVLDQ 222 (584)
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99999999998888888887888888888888766444 44444444444
No 339
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.32 E-value=1.9e-14 Score=117.96 Aligned_cols=68 Identities=21% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+.... +.+.++++|..
T Consensus 118 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 118 VLKKYPFQLSGGMLQRVMIA---------LALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred HHhCChhhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 44566778999999999999 9999999999999999999999999999999988653 56777788864
No 340
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.32 E-value=4.1e-14 Score=118.24 Aligned_cols=69 Identities=22% Similarity=0.133 Sum_probs=59.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 145 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~ 214 (262)
T PRK09984 145 FAHQRVSTLSGGQQQRVAIA---------RALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214 (262)
T ss_pred HHhCCccccCHHHHHHHHHH---------HHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667788999999999999 9999999999999999999999999999999988643 567777888654
No 341
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.32 E-value=5.4e-14 Score=117.82 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+++.++++.+ ++++.++..+++|||++++|....+.+.+.+.++.. ..+.++++|+..
T Consensus 147 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 214 (269)
T PRK14259 147 KLNESGYSLSGGQQQRLCIA---------RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ 214 (269)
T ss_pred hhCCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 35666788999999999999 999999999999999999999999999999998854 456677888643
No 342
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.31 E-value=2.2e-12 Score=108.30 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=60.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++...++|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 135 ~~~~~~~~LSgG~~qrv~la---------raL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 135 FRHRQIGELSGGQKKRVFLA---------RAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45566788999999999999 9999999999999999999999999999999988655667778888653
No 343
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.31 E-value=2.1e-11 Score=91.92 Aligned_cols=75 Identities=32% Similarity=0.481 Sum_probs=59.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe---EEEEeccccccc--------------ccchHHHHHHHHHHHHHhCCCeE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH---TVVIQVADMFSK--------------FYGEAEFRLKAAFDAALDHAPSL 75 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~---~~~v~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~~v 75 (305)
+..++|+||+||||||+++.++..+... ++.++++..... ............+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998775 777777654322 22345666778888888888899
Q ss_pred EEEcccccccCC
Q psy5649 76 LLLDNLDVLCTG 87 (305)
Q Consensus 76 l~ide~d~l~~~ 87 (305)
+++||++.+...
T Consensus 82 iiiDei~~~~~~ 93 (148)
T smart00382 82 LILDEITSLLDA 93 (148)
T ss_pred EEEECCcccCCH
Confidence 999999987543
No 344
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.31 E-value=5.1e-14 Score=117.50 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++.. ..+.++++|...
T Consensus 149 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~ 216 (260)
T PRK10744 149 KLHQSGYSLSGGQQQRLCIA---------RGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ 216 (260)
T ss_pred HHhcCCCCCCHHHHHHHHHH---------HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 45566788999999999999 999999999999999999999999999999998854 456677888643
No 345
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.31 E-value=3.6e-14 Score=118.25 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. +.+.++++|+..
T Consensus 147 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~ 214 (258)
T PRK14268 147 RLKSPALSLSGGQQQRLCIA---------RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ 214 (258)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 34556778999999999999 999999999999999999999999999999998854 466777888654
No 346
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=7e-10 Score=93.22 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=114.5
Q ss_pred CCCcc-eEEEEcCCCCcHHHHHHHHHhhcCCe-EE--EE-ecc----c----cc---c-cccch----HHHHHHHHH-HH
Q psy5649 10 MKKCN-GILIYGVNGTGKTSLIHSLASHMKVH-TV--VI-QVA----D----MF---S-KFYGE----AEFRLKAAF-DA 67 (305)
Q Consensus 10 ~~~~~-~vll~Gp~G~GKTtl~~~la~~l~~~-~~--~v-~~~----~----~~---~-~~~~~----~~~~l~~~~-~~ 67 (305)
+..+. .++|+||+|+||||+++.+++.+... .. .+ ++. + +. + ...+. ....+...+ ..
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34434 68899999999999999999987632 21 11 110 0 00 0 00011 112222222 22
Q ss_pred HHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC--CCCCC----ccccCCCCcceEE
Q psy5649 68 ALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS--LDNVD----VSLRTPGRLDQEI 141 (305)
Q Consensus 68 ~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~--~~~l~----~~l~~~~r~~~~i 141 (305)
.....+.+++|||++.+.. .....+..+... .......+.++.+... .+.+. ..+.+ |+...+
T Consensus 119 ~~~~~~~vliiDe~~~l~~------~~~~~l~~l~~~---~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTP------ELLEELRMLSNF---QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred HhCCCCeEEEEECcccCCH------HHHHHHHHHhCc---ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 3356678999999987631 112222222211 1111222222332221 11111 12333 666788
Q ss_pred EccCCCHHHHHHHHHHHHhcCC----CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 142 ELPVPSRDQRAAILHCLLTKVP----HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 142 ~~~~p~~~~r~~i~~~~l~~~~----~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
+++..+..+...++...+...+ ..++.+.++.+...|.|.... |..++..+......+ +...++.+++..++
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~---~~~~i~~~~v~~~~ 263 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE---EKREIGGEEVREVI 263 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc---CCCCCCHHHHHHHH
Confidence 9999999999998887776433 358888999999999999655 888888876665543 44567788888877
Q ss_pred hhcC
Q psy5649 218 DHVK 221 (305)
Q Consensus 218 ~~~~ 221 (305)
..+.
T Consensus 264 ~~~~ 267 (269)
T TIGR03015 264 AEID 267 (269)
T ss_pred HHhh
Confidence 7653
No 347
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.31 E-value=1.1e-13 Score=115.15 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|+.+.+.+.+.+.+.... +.+.++++|+..
T Consensus 141 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~ 210 (253)
T TIGR02323 141 RIDDLPRAFSGGMQQRLQIA---------RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG 210 (253)
T ss_pred hhhcCchhcCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44556778999999999999 9999999999999999999999999999999887543 667788888643
No 348
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.31 E-value=7.7e-14 Score=123.94 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++++.+..+|+|++++++.+ ++++.+|..+++|||++++|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 136 ~ld~~~~~LSGGQrQRVaLA---------rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 136 FIYQPVKTYSSGMKSRLGFA---------ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45667789999999999999 9999999999999999999999999999999888655666777888643
No 349
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.31 E-value=5.8e-14 Score=116.93 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=60.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|....+.+.+.+.+++..+.+.++++|+...
T Consensus 130 ~~~~~~~~LS~G~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 130 LADRDMSTLSGGERQRVHVA---------RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 45667788999999999999 99999999999999999999999999999999886555677778886543
No 350
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.31 E-value=1.1e-10 Score=109.80 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=106.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccc---------cchHHHHHH-HHHHHHHhCCCeEEEEccccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKF---------YGEAEFRLK-AAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~---------~~~~~~~l~-~~~~~~~~~~~~vl~ide~d~ 83 (305)
..+||+||+|||||++++.+|..++.+++.+++++..... .|.....-. .+.+....+..+|++|||+|.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 4699999999999999999999999999999987654211 111100011 122333445568999999998
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhc--cc------CCeEEEEEEecCCC-------------------------CCCcc
Q psy5649 84 LCTGRNRSDQERRLLSCLVTQVDRLH--EL------QACVVLLAVTTSLD-------------------------NVDVS 130 (305)
Q Consensus 84 l~~~~~~~~~~~~~~~~l~~~~~~~~--~~------~~~~~~i~~t~~~~-------------------------~l~~~ 130 (305)
+.+ .....+++.++.-. +. -.++++|.|||... .+.|.
T Consensus 569 a~~---------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pe 639 (758)
T PRK11034 569 AHP---------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_pred hhH---------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHH
Confidence 632 24455555554211 10 14566788888431 12233
Q ss_pred ccCCCCcceEEEccCCCHHHHHHHHHHHHhc---------CCCCCCHHhHHHHHHHc--CCCcHHhHHHHHHHHH
Q psy5649 131 LRTPGRLDQEIELPVPSRDQRAAILHCLLTK---------VPHSLSTDQIQQVAFIT--HGFVGGDLATLLSNAT 194 (305)
Q Consensus 131 l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~---------~~~~ls~~~~~~la~~t--~g~~~~di~~l~~~~~ 194 (305)
+.+ |++..+.|++.+..+..+|+...+.+ ....++...++.++... ..|-++.++.++.+-.
T Consensus 640 fl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l 712 (758)
T PRK11034 640 FRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_pred HHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 444 88999999999999999988755442 23345666677666432 2233556666655544
No 351
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.31 E-value=3.1e-13 Score=116.81 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=148.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++.-.|.|.||+|||||.+.|.+...++.+++ ++|+-..-+.
T Consensus 24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI--------------------------------~v~G~~v~~~ 71 (501)
T COG3845 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI--------------------------------RVDGKEVRIK 71 (501)
T ss_pred eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE--------------------------------EECCEEeccC
Confidence 57889999999999999999999999999999988777 4444433222
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCC---
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVP--- 163 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~--- 163 (305)
+.. +..+.-+. .+ .....++-+-+..+++--..... .....+..+-.+-++.+.++++
T Consensus 72 sP~--dA~~~GIG----MV------hQHF~Lv~~lTV~ENiiLg~e~~-------~~~~~~~~~~~~~i~~l~~~yGl~v 132 (501)
T COG3845 72 SPR--DAIRLGIG----MV------HQHFMLVPTLTVAENIILGLEPS-------KGGLIDRRQARARIKELSERYGLPV 132 (501)
T ss_pred CHH--HHHHcCCc----EE------eeccccccccchhhhhhhcCccc-------cccccCHHHHHHHHHHHHHHhCCCC
Confidence 110 11000000 00 11122344446666665444331 0111122222222233444443
Q ss_pred ------CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 164 ------HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 164 ------~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
.++|.++.|++.+. +.|.+.+..+++|||++-+.+...+++.+.++.++..+.+.++++|.....
T Consensus 133 dp~~~V~dLsVG~qQRVEIl---------KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev 203 (501)
T COG3845 133 DPDAKVADLSVGEQQRVEIL---------KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEV 203 (501)
T ss_pred CccceeecCCcchhHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 46888899999988 999999999999999999999999999999999999999999999965322
Q ss_pred ccc-------------cchHHH----HHHHHHHhhc-----cCC---------------------C-HHHHHhcCCCCCc
Q psy5649 238 SDI-------------GGQDEV----KLKLRQSVEW-----PLK---------------------H-PEAFARLGIKPPR 273 (305)
Q Consensus 238 ~~i-------------~g~~~~----~~~l~~~~~~-----~~~---------------------~-~~~~~~~~~~~~~ 273 (305)
-.+ +..+.+ .+.+.+.+.. +.. . ...++.++|....
T Consensus 204 ~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~ 283 (501)
T COG3845 204 MAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRA 283 (501)
T ss_pred HHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEec
Confidence 221 112211 2333333221 000 0 1224556666667
Q ss_pred c--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 274 G--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 274 g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
| +.+.|-+|-|-+.|+.+|++.-.
T Consensus 284 GEIvGIAGV~GNGQ~eL~eaisGlr~ 309 (501)
T COG3845 284 GEIVGIAGVAGNGQSELVEAISGLRK 309 (501)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCc
Confidence 7 88999999999999999998764
No 352
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.2e-10 Score=107.12 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=111.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
.+..+||+||+|+||||+++++|+.+.+. ++++++.+ ......++.+.+.
T Consensus 37 ~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~ 110 (576)
T PRK14965 37 VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELREN 110 (576)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHH
Confidence 34568999999999999999999988643 23333221 1123345565555
Q ss_pred HHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+... ...|++|||+|.+.. .....|+..++.. .+.+++|.+|+.++.+...+++ |. ..+++
T Consensus 111 ~~~~p~~~~~KVvIIdev~~Lt~---------~a~naLLk~LEep---p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f 175 (576)
T PRK14965 111 VKYLPSRSRYKIFIIDEVHMLST---------NAFNALLKTLEEP---PPHVKFIFATTEPHKVPITILS--RC-QRFDF 175 (576)
T ss_pred HHhccccCCceEEEEEChhhCCH---------HHHHHHHHHHHcC---CCCeEEEEEeCChhhhhHHHHH--hh-hhhhc
Confidence 4422 235999999997742 2234566666643 3456677778888899888887 55 57889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
..++..+....+...+++.+..++.+.++.++..+.| +.+++..++.+.
T Consensus 176 ~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldql 224 (576)
T PRK14965 176 RRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQV 224 (576)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 8999999888888888888888999899999988776 445555555443
No 353
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.4e-10 Score=104.78 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=112.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEe-------ccc------cccc----------ccchHHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQ-------VAD------MFSK----------FYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~-------~~~------~~~~----------~~~~~~~~l~~~~~~~~ 69 (305)
+..+||+||+|+||||+++.+|+.+.+.....+ |.. +... ........++.+++.+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~ 125 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVR 125 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHH
Confidence 557999999999999999999998865421111 110 0000 00112345666666654
Q ss_pred hC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 70 DH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 70 ~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
.. ...|++|||+|.+.. .....|+..++.. ...+.+|.+|+..+.+.+.+++ |+ ..++++.
T Consensus 126 ~~P~~a~~KVvIIDEad~Ls~---------~a~naLLKtLEeP---p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~ 190 (598)
T PRK09111 126 YRPVSARYKVYIIDEVHMLST---------AAFNALLKTLEEP---PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRR 190 (598)
T ss_pred hchhcCCcEEEEEEChHhCCH---------HHHHHHHHHHHhC---CCCeEEEEEeCChhhhhHHHHh--he-eEEEecC
Confidence 32 346999999988731 2344566666643 3445566667777778778877 65 5789999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
++..+....+...+++.+..++.+.++.++..+.| +.+++..++.++
T Consensus 191 l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 191 IEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999999998888888888998888888888766 556666666554
No 354
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=6e-13 Score=107.78 Aligned_cols=72 Identities=17% Similarity=0.025 Sum_probs=61.0
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
++.....+|+|+.++++.+ ++++.++..+++|||+++.|....+.+.+.+.+....+.+.++++|+...+.
T Consensus 131 ~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 131 EDTLVRQLSAGQKKRLALA---------RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAP 201 (214)
T ss_pred ccCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhh
Confidence 4556678999999999999 9999999999999999999999999999999887666667788888765444
Q ss_pred c
Q psy5649 239 D 239 (305)
Q Consensus 239 ~ 239 (305)
+
T Consensus 202 ~ 202 (214)
T PRK13543 202 P 202 (214)
T ss_pred h
Confidence 3
No 355
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.30 E-value=2.8e-14 Score=116.13 Aligned_cols=68 Identities=24% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.++++..+ +.+.++++|+.
T Consensus 134 ~~~~~~~~lS~G~~qrv~la---------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 134 HLDYYPHNLSGGQKQRVAIA---------RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred hhhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45666778999999999999 9999999999999999999999999999999887653 66777888864
No 356
>KOG1051|consensus
Probab=99.30 E-value=4.5e-10 Score=105.26 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=102.0
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh-
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD- 70 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~- 70 (305)
..+.+.....++-+|+|.+|+|||.++.-+++.. ...++.++...+. .++.++.+.+++.+...+..
T Consensus 199 vi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~ 278 (898)
T KOG1051|consen 199 VIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESG 278 (898)
T ss_pred HHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcC
Confidence 3445666777899999999999999999998765 3345666665544 34678899999999999885
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEccC
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~~ 145 (305)
....||+|||++.+....... ........+...+. .+.+.+|++|+.. -+-+|++.+ || ..+.++.
T Consensus 279 ~~gvILfigelh~lvg~g~~~-~~~d~~nlLkp~L~-----rg~l~~IGatT~e~Y~k~iekdPalEr--rw-~l~~v~~ 349 (898)
T KOG1051|consen 279 GGGVILFLGELHWLVGSGSNY-GAIDAANLLKPLLA-----RGGLWCIGATTLETYRKCIEKDPALER--RW-QLVLVPI 349 (898)
T ss_pred CCcEEEEecceeeeecCCCcc-hHHHHHHhhHHHHh-----cCCeEEEecccHHHHHHHHhhCcchhh--Cc-ceeEecc
Confidence 456699999999998765441 12222222222222 3447889988742 234788888 88 4567788
Q ss_pred CCHHHHHHHHHHHHh
Q psy5649 146 PSRDQRAAILHCLLT 160 (305)
Q Consensus 146 p~~~~r~~i~~~~l~ 160 (305)
|+..+-..++.....
T Consensus 350 pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 350 PSVENLSLILPGLSE 364 (898)
T ss_pred Ccccchhhhhhhhhh
Confidence 888776667664433
No 357
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.7e-10 Score=105.29 Aligned_cols=160 Identities=16% Similarity=0.278 Sum_probs=110.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+||||+++++|+.+... ++++++.. ......++++.+.+
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~ 111 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEI 111 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHH
Confidence 4468999999999999999999988642 22222110 01223444544433
Q ss_pred H----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 L----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
. .....|++|||+|.+.. .....++..++. ....+++|.+|+.+..+.+.+++ |+ ..+++.
T Consensus 112 ~~~p~~~~~KVvIIDEa~~Ls~---------~a~naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~ 176 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVHMLSN---------SAFNALLKTIEE---PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFR 176 (563)
T ss_pred HhchhcCCCEEEEEEChhhcCH---------HHHHHHHHhhcc---CCCCEEEEEecCChHHhHHHHHH--hc-eEEEec
Confidence 3 23456999999997731 233445555553 24556677777777888888887 65 468899
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.++..+..+.+...+......++.+.++.++..+.| +.+++..++.+..
T Consensus 177 ~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 177 LLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999888888777888889899999988776 5666666665543
No 358
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=3e-12 Score=102.63 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=52.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLV 230 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 230 (305)
.+.....+|+++.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++... ..+.++.
T Consensus 112 ~~~~~~~LS~Ge~qrl~la---------ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 112 GNEFVRGISGGERKRVSIA---------EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175 (202)
T ss_pred cccchhhCCHHHHHHHHHH---------HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3455678999999999999 9999999999999999999999999999999988654 3333443
No 359
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=5e-14 Score=117.19 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. +.+.++++|+..
T Consensus 143 ~~~~~~~LSgGq~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~ 209 (253)
T PRK14242 143 LHESALGLSGGQQQRLCIA---------RALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ 209 (253)
T ss_pred hhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH
Confidence 4566788999999999999 999999999999999999999999999999998854 456777888654
No 360
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.30 E-value=7.3e-14 Score=116.93 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=58.3
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
+++.+..+|+|++|+++.+ ++++.++..+++|||+.++|..+...+.+.+..+.. ..+.++++|+...
T Consensus 157 ~~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~ 224 (267)
T PRK14235 157 LHEPGTGLSGGQQQRLCIA---------RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ 224 (267)
T ss_pred hhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH
Confidence 4556788999999999999 999999999999999999999999999999998855 4567778886443
No 361
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.3e-10 Score=104.72 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=106.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeE-------------------------EEEecccccccccchHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHT-------------------------VVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~-------------------------~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
+..+||+||+|+||||+++.+|+.+.+.. ++++.+. ......++.+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~ 111 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIER 111 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHH
Confidence 45579999999999999999999875321 2222211 1112334444443
Q ss_pred HHh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+.. ....|++|||+|.+.. .....|+..++.. ...+++|.+++..+.+.+.+++ |+ ..+++
T Consensus 112 ~~~~p~~~~~kVvIIDEa~~L~~---------~a~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f 176 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVHMLST---------AAFNALLKTLEEP---PPHAIFILATTEVHKVPATILS--RC-QRFDF 176 (585)
T ss_pred HhhCcccCCeEEEEEeChHhCCH---------HHHHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHh--cc-ceeeC
Confidence 332 2345999999987631 2234455555543 2345666667777777777776 55 46889
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
+.++..+...++...+.+.+..++.+.++.++..+.| +.+++...+.+.
T Consensus 177 ~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 177 HRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999999998888888877888898889999987766 666666655543
No 362
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.30 E-value=6.1e-13 Score=123.76 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+..+|+||+|+++.+ +++++++..+++|||++..|..+...+.+++.+..+ +.+.++++|+..
T Consensus 478 g~~LSGGqrQRi~LA---------Rall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~ 540 (582)
T PRK11176 478 GVLLSGGQRQRIAIA---------RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS 540 (582)
T ss_pred CCcCCHHHHHHHHHH---------HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH
Confidence 456999999999999 999999999999999999999999999999988744 467777888653
No 363
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.30 E-value=4.9e-14 Score=117.90 Aligned_cols=69 Identities=16% Similarity=0.043 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++... +.+.++++|+..
T Consensus 136 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~ 205 (265)
T PRK10253 136 LADQSVDTLSGGQRQRAWIA---------MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN 205 (265)
T ss_pred HhcCCcccCChHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45677889999999999999 9999999999999999999999999999999887653 566777888654
No 364
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.29 E-value=4.6e-13 Score=110.89 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+..
T Consensus 113 ~~~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~ 182 (251)
T PRK09544 113 LIDAPMQKLSGGETQRVLLA---------RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251)
T ss_pred HHhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 45566788999999999999 9999999999999999999999999999999887554 566777887654
No 365
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=8.4e-14 Score=115.30 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=57.9
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. +.+.++++|+..
T Consensus 136 ~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 202 (246)
T PRK14269 136 LKQNALALSGGQQQRLCIA---------RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ 202 (246)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 4455678999999999999 999999999999999999999999999999988864 566777888654
No 366
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.29 E-value=2.4e-12 Score=103.13 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=55.9
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++...+.+.++++|..
T Consensus 100 ~~~~~LS~G~~qrv~la---------ral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~ 164 (200)
T cd03217 100 YVNEGFSGGEKKRNEIL---------QLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164 (200)
T ss_pred hccccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 33457999999999999 999999999999999999999999999999998865556677777754
No 367
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=6.8e-14 Score=116.18 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=58.0
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++..+.++|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+... +.+.++++|+..
T Consensus 140 ~~~~~~~LSgG~~qrv~la---------ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14247 140 LDAPAGKLSGGQQQRLCIA---------RALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ 206 (250)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 4566788999999999999 999999999999999999999999999999998854 456677887654
No 368
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.29 E-value=4.1e-10 Score=90.23 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=107.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHh-CCCeEEEEcccccccC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALD-HAPSLLLLDNLDVLCT 86 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~vl~ide~d~l~~ 86 (305)
.+.+++||+|+.|||||++++++..+. +..+++|.-.++ ..+..+++..+. ..+-|||+|++- |.
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L---------~~l~~l~~~l~~~~~kFIlf~DDLs--Fe 118 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL---------GDLPELLDLLRDRPYKFILFCDDLS--FE 118 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh---------ccHHHHHHHHhcCCCCEEEEecCCC--CC
Confidence 567899999999999999999999866 566777754333 345566666653 356799999853 33
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcc-cCCeEEEEEEecCCCCCCccccC---------------------CCCcceEEEcc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHE-LQACVVLLAVTTSLDNVDVSLRT---------------------PGRLDQEIELP 144 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~i~~t~~~~~l~~~l~~---------------------~~r~~~~i~~~ 144 (305)
..+ ... ..|...++.--+ ...++++.+|+|..+-+...... ..||...+.|.
T Consensus 119 ~~d---~~y---k~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~ 192 (249)
T PF05673_consen 119 EGD---TEY---KALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY 192 (249)
T ss_pred CCc---HHH---HHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec
Confidence 222 222 333444443332 24678888888875544332211 23788899999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHH----HHcCCCcHHhHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVA----FITHGFVGGDLATL 189 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la----~~t~g~~~~di~~l 189 (305)
.|+.++=++|.+.++.+.+..++.+++..-| ..-.|.||+-....
T Consensus 193 ~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 193 PPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999888888865544433 33345555544433
No 369
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.29 E-value=7.3e-14 Score=116.05 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|......+.+.+.++. .+.+.++++|...
T Consensus 140 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~ 207 (251)
T PRK14249 140 NLHKSGLALSGGQQQRLCIA---------RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ 207 (251)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 45677889999999999999 99999999999999999999999999999998885 3567777888654
No 370
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.29 E-value=2.4e-13 Score=112.03 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|....+.+.+.+.++.. +.+.++++|+..
T Consensus 132 ~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 198 (237)
T cd03252 132 VGEQGAGLSGGQRQRIAIA---------RALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS 198 (237)
T ss_pred hhcCCCcCCHHHHHHHHHH---------HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH
Confidence 3456788999999999999 999999999999999999999999999999998864 566677777543
No 371
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.29 E-value=1.9e-12 Score=129.24 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=56.4
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHH---HHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLL---SNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+++....+|+++.|+++.+ ++++ .++..+++|||+.++|....+.+.+.+.++...+.+.++++|..
T Consensus 803 l~q~~~tLSGGE~QRV~LA---------raL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl 872 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLA---------YELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872 (1809)
T ss_pred hcCccccCCHHHHHHHHHH---------HHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3556678999999999988 7886 47888899999999999999999999998876666777788854
No 372
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.29 E-value=1.8e-14 Score=120.57 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=58.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.++++... +.+.++++|+..
T Consensus 144 ~~~~~~~~LS~Ge~qrl~la---------ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~ 213 (268)
T PRK10419 144 VLDKRPPQLSGGQLQRVCLA---------RALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR 213 (268)
T ss_pred HhhCCCccCChHHHHHHHHH---------HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH
Confidence 34556778999999999999 9999999999999999999999999999999888654 567777888643
No 373
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.29 E-value=1.1e-13 Score=115.82 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHH---------HHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhh
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLS---------NATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQ 227 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 227 (305)
+.++....+|+|+.++++.+ ++++. ++..+++|||+.++|..+.+.+.+.+.++... +.+.
T Consensus 138 ~~~~~~~~LSgG~~qrv~la---------ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tv 208 (272)
T PRK13547 138 LVGRDVTTLSGGELARVQFA---------RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGV 208 (272)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 45566788999999999998 88884 88889999999999999999999999988654 5677
Q ss_pred hhccCCCC
Q psy5649 228 VLVEVPNV 235 (305)
Q Consensus 228 ~~~~~~~~ 235 (305)
++++|+..
T Consensus 209 iiisH~~~ 216 (272)
T PRK13547 209 LAIVHDPN 216 (272)
T ss_pred EEEECCHH
Confidence 77888654
No 374
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1.2e-12 Score=102.93 Aligned_cols=61 Identities=25% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+.... +.+.++++|+..
T Consensus 101 lS~G~~qr~~la---------~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 101 LSGGQQQRVALA---------RALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred CCHHHHHHHHHH---------HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999 9999999999999999999999999999999988665 566777888654
No 375
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=6.4e-14 Score=116.71 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=60.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|....
T Consensus 146 ~~~~~~~~LS~G~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 146 HANRQAGNLAYGQQRRLEIA---------RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 45667788999999999999 9999999999999999999999999999999988654 5677788886543
No 376
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=7.8e-14 Score=116.31 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=58.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. ..+.++++|+..
T Consensus 141 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~ 208 (258)
T PRK14241 141 RLDKPGGGLSGGQQQRLCIA---------RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ 208 (258)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 34566788999999999999 999999999999999999999999999999998854 456677877643
No 377
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=4.6e-10 Score=100.24 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=105.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe-------------------------EEEEecccccccccchHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH-------------------------TVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~-------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
+..+||+||+|+||||+++.+|..+... ++++++... . .-..++.+.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~ 112 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINET 112 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHH
Confidence 4568999999999999999999987532 223322111 0 11223332222
Q ss_pred HH----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 AL----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
.. .....|++|||+|.+.. .....+...++.. .+.+.+|.+++....+.+.+++ |+ ..+++
T Consensus 113 l~~~~~~~~~kvvIIdead~lt~---------~~~n~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f 177 (451)
T PRK06305 113 VLFTPSKSRYKIYIIDEVHMLTK---------EAFNSLLKTLEEP---PQHVKFFLATTEIHKIPGTILS--RC-QKMHL 177 (451)
T ss_pred HHhhhhcCCCEEEEEecHHhhCH---------HHHHHHHHHhhcC---CCCceEEEEeCChHhcchHHHH--hc-eEEeC
Confidence 22 24567999999987631 1234556666643 3455666677877888888887 65 57899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
+.++..+....+...+++.+..++.+.++.++..+.| +.+++..++..
T Consensus 178 ~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lek 225 (451)
T PRK06305 178 KRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDY 225 (451)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 9999999998888777777888888889999987654 44444444443
No 378
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.28 E-value=3e-13 Score=125.93 Aligned_cols=62 Identities=26% Similarity=0.221 Sum_probs=54.7
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+||++.+ +++++++..+++||+++..|..+.+.+.+++.+..+ +.+.++++|..
T Consensus 483 G~~LSGGQrQRialA---------RAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIiItHrl 544 (588)
T PRK11174 483 AAGLSVGQAQRLALA---------RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQL 544 (588)
T ss_pred CCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCh
Confidence 457999999999999 999999999999999999999999999999988754 45677787764
No 379
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=8.8e-14 Score=116.08 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=58.1
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++.....+|+|++++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. ..+.++++|+..
T Consensus 149 l~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 215 (259)
T PRK14274 149 LHTQALSLSGGQQQRLCIA---------RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ 215 (259)
T ss_pred hhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH
Confidence 4566778999999999999 999999999999999999999999999999998864 456677888643
No 380
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.28 E-value=4e-12 Score=101.24 Aligned_cols=61 Identities=20% Similarity=0.113 Sum_probs=54.8
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+|+|+.++++.+ ++++.++..+++|||++..|..+.+.+.+.+.+....+.+.++++|+.
T Consensus 111 ~LS~G~~qrv~la---------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 171 (194)
T cd03213 111 GLSGGERKRVSIA---------LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171 (194)
T ss_pred cCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 7999999999999 999999999999999999999999999999998865566777788864
No 381
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=6.9e-14 Score=118.00 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++... .+.++++|+..
T Consensus 173 ~~~~~~~~LSgGe~qrv~LA---------raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~ 240 (285)
T PRK14254 173 QLDSSGLDLSGGQQQRLCIA---------RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ 240 (285)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH
Confidence 34566789999999999999 9999999999999999999999999999999988654 56677777643
No 382
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.28 E-value=1.1e-12 Score=107.03 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=59.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++...+.+.++++|+..
T Consensus 117 ~~~~~~~~LS~G~~~rv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~ 185 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIA---------IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS 185 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHH---------HHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34556678999999999999 9999999999999999999999999999999988655566777888643
No 383
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=8e-14 Score=116.72 Aligned_cols=68 Identities=16% Similarity=0.098 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.+... ..+.++++|...
T Consensus 156 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 223 (267)
T PRK14237 156 DLHKSALTLSGGQQQRLCIA---------RAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ 223 (267)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 45667789999999999999 999999999999999999999999999999998854 456677887643
No 384
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=4e-10 Score=101.45 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=112.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
-+..+||+||+|+||||+++++++.+.. .+++++.++- .....++++.+.
T Consensus 35 l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~ 108 (535)
T PRK08451 35 LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQ 108 (535)
T ss_pred CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHH
Confidence 3445799999999999999999988732 2333332210 113445555554
Q ss_pred HHh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
... ....|++|||+|.+.. .....++..++.. ...+.+|.+|+.+..+.+.+++ |. ..+++
T Consensus 109 ~~~~P~~~~~KVvIIDEad~Lt~---------~A~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F 173 (535)
T PRK08451 109 TKYKPSMARFKIFIIDEVHMLTK---------EAFNALLKTLEEP---PSYVKFILATTDPLKLPATILS--RT-QHFRF 173 (535)
T ss_pred HhhCcccCCeEEEEEECcccCCH---------HHHHHHHHHHhhc---CCceEEEEEECChhhCchHHHh--hc-eeEEc
Confidence 332 1234999999987631 2334556666653 3345566666777889888988 64 68899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSA 196 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~ 196 (305)
..++..+....+...+.+.+..++.+.++.++....| +.+++..++.++..+
T Consensus 174 ~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 174 KQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 9999999998888888888888888899999987766 666777776665543
No 385
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.28 E-value=1.2e-12 Score=101.87 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH--HHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN--ATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+++....+|+++.++++.+ ++++.+ +..+++|||+...|....+.+.+.+.++...+.+.++++|+.
T Consensus 81 ~~~~~~~LSgGq~qrl~la---------ral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLA---------SELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred cCCCcCcCCHHHHHHHHHH---------HHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4456678999999999999 999999 999999999999999999999999988765566777888864
No 386
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.28 E-value=1.9e-13 Score=113.88 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+.....+|+|++++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|...
T Consensus 136 ~~~~~~~~LS~Gq~qrv~La---------ral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~ 204 (264)
T PRK13546 136 FIYQPVKKYSSGMRAKLGFS---------INITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204 (264)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 34556778999999999999 9999999999999999999999999999999887655566777777543
No 387
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1.9e-13 Score=114.27 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+..+... .+.++++|+..
T Consensus 144 ~~~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~tvi~vtH~~~ 211 (264)
T PRK14243 144 KLKQSGLSLSGGQQQRLCIA---------RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQ 211 (264)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcC-CEEEEEecCHH
Confidence 34566778999999999999 9999999999999999999999999999999988653 56677877643
No 388
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.28 E-value=3e-13 Score=110.18 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=59.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+.....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 106 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 106 LADRPVGELSGGQRQRVLVA---------RALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 34556678999999999999 9999999999999999999999999999999988655667777887643
No 389
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=4.1e-13 Score=102.50 Aligned_cols=167 Identities=20% Similarity=0.187 Sum_probs=110.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.++++.-..+.||||+|||||+..+++.++.+.+.+ .+|..|.--
T Consensus 21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i--------------------------------~i~g~~~~~- 67 (252)
T COG4604 21 SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI--------------------------------TIDGLELTS- 67 (252)
T ss_pred eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceE--------------------------------EEeeeeccc-
Confidence 46788999999999999999999999999998887776 555555421
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH--------HH
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH--------CL 158 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~--------~~ 158 (305)
.....++.-+..+.+-...+.++ ++ ..+...|||.. .-..|+.+++..|-+ .+
T Consensus 68 ------~~s~~LAk~lSILkQ~N~i~~rl------TV-----~dLv~FGRfPY--SqGRlt~eD~~~I~~aieyl~L~~l 128 (252)
T COG4604 68 ------TPSKELAKKLSILKQENHINSRL------TV-----RDLVGFGRFPY--SQGRLTKEDRRIINEAIEYLHLEDL 128 (252)
T ss_pred ------CChHHHHHHHHHHHhhchhhhee------EH-----HHHhhcCCCcc--cCCCCchHHHHHHHHHHHHhcccch
Confidence 11122333333333221111111 11 12334456643 334567777766533 12
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
-+++-.++|+|+.|+.-.+ ..++++.....+|||-+++|....-.+++.+++.... +.+.+++-|+-
T Consensus 129 ~dryLd~LSGGQrQRAfIA---------MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 129 SDRYLDELSGGQRQRAFIA---------MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred HHHhHHhcccchhhhhhhh---------eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 3344567999999998888 8889998888889999999998888888888877554 44455555543
No 390
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=1e-13 Score=115.27 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=57.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++..+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.++++.. ..+.++++|...
T Consensus 142 ~~~~~~~LS~G~~qrl~la---------ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 208 (252)
T PRK14256 142 LKSNAMELSGGQQQRLCIA---------RTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ 208 (252)
T ss_pred hhCCcCcCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 3456778999999999999 999999999999999999999999999999998865 356677888643
No 391
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.27 E-value=6e-14 Score=115.46 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+.... +.+.++++|...
T Consensus 123 ~~~~~~~~lS~G~~qrl~la---------ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~ 192 (237)
T TIGR00968 123 LGDRYPNQLSGGQRQRVALA---------RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE 192 (237)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44556678999999999999 9999999999999999999999999999999987654 566777777543
No 392
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.27 E-value=6.2e-12 Score=101.39 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=57.1
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+++....+|+++.++++.+ ++++.++..+++|||+...|....+.+.+.+.+... +.+.++++|+.
T Consensus 119 ~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~ 184 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLA---------RALLKRPRVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRL 184 (207)
T ss_pred ccCCCCcCCHHHHHHHHHH---------HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 4566789999999999999 999999999999999999999999999999998754 56667777753
No 393
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.27 E-value=5.3e-14 Score=116.29 Aligned_cols=68 Identities=18% Similarity=0.042 Sum_probs=57.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++.. ..+.++++|...
T Consensus 136 ~~~~~~~~LS~Ge~qrv~la---------ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 203 (242)
T TIGR03411 136 EADRLAGLLSHGQKQWLEIG---------MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME 203 (242)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence 34455678999999999999 999999999999999999999999999999998865 456777877643
No 394
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.27 E-value=2.8e-13 Score=110.78 Aligned_cols=68 Identities=21% Similarity=0.112 Sum_probs=58.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++.....+|+++.++++.+ ++++.++..+++|||+...|....+.+.+.+..+.. ..+.++++|+..
T Consensus 143 ~~~~~~~~LSgG~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 210 (226)
T cd03248 143 EVGEKGSQLSGGQKQRVAIA---------RALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS 210 (226)
T ss_pred hhhcCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH
Confidence 34556788999999999999 999999999999999999999999999999998765 456677777643
No 395
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.5e-13 Score=114.10 Aligned_cols=68 Identities=19% Similarity=0.133 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.++.. +.+.++++|+..
T Consensus 139 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14240 139 RLKKSALGLSGGQQQRLCIA---------RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred HHhcCCCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH
Confidence 34566789999999999999 999999999999999999999999999999998854 456777888654
No 396
>KOG0743|consensus
Probab=99.27 E-value=6.6e-12 Score=107.71 Aligned_cols=79 Identities=22% Similarity=0.414 Sum_probs=68.7
Q ss_pred hhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
+.+..+|| ..++.++--.+.|+.+.+-+..-.+.++-|++.|..-.+|.|||||||||||+++.|+|+.++++.+-+.|
T Consensus 190 ~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL 268 (457)
T KOG0743|consen 190 RSVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL 268 (457)
T ss_pred eecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeee
Confidence 34456777 78888888888888888877777888889999999999999999999999999999999999999887654
No 397
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.4e-10 Score=100.98 Aligned_cols=165 Identities=13% Similarity=0.235 Sum_probs=104.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE----------Eecccc----------------cccccchHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV----------IQVADM----------------FSKFYGEAEFRLKAAFD 66 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~----------v~~~~~----------------~~~~~~~~~~~l~~~~~ 66 (305)
+..++|+||+|+||||+|+++|+.+...... -.|..+ ...........++++.+
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~ 117 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRE 117 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHH
Confidence 4469999999999999999999988653100 011110 00000111345555554
Q ss_pred HHHh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEE
Q psy5649 67 AALD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIE 142 (305)
Q Consensus 67 ~~~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~ 142 (305)
.+.. ....|++|||+|.+.. .....++..++.. .+..++|.+++....+.+.+++ |. ..++
T Consensus 118 ~~~~~p~~~~~kvvIIdea~~l~~---------~~~~~LLk~LEep---~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~ 182 (397)
T PRK14955 118 NVRYGPQKGRYRVYIIDEVHMLSI---------AAFNAFLKTLEEP---PPHAIFIFATTELHKIPATIAS--RC-QRFN 182 (397)
T ss_pred HHhhchhcCCeEEEEEeChhhCCH---------HHHHHHHHHHhcC---CCCeEEEEEeCChHHhHHHHHH--HH-HHhh
Confidence 4432 2345999999987732 1233455555532 3345556666767777777776 54 4688
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
++.++..+-...+...++.....++.+.++.++..+.| +.+.+...+...
T Consensus 183 f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 183 FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 98899988888888888777788999899999977665 444444444443
No 398
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.27 E-value=3.5e-13 Score=111.11 Aligned_cols=64 Identities=25% Similarity=0.189 Sum_probs=55.9
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+.+..+|+|+.++++.+ ++++.++..+++|||++++|....+.+.+.+.... .+.+.++++|+.
T Consensus 135 ~~~~~LS~G~~qrv~la---------~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~ 198 (238)
T cd03249 135 ERGSQLSGGQKQRIAIA---------RALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRL 198 (238)
T ss_pred cCCccCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCH
Confidence 34578999999999999 99999999999999999999999999999998886 556667777754
No 399
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=8.6e-10 Score=101.40 Aligned_cols=164 Identities=15% Similarity=0.262 Sum_probs=106.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE----------Eecccc------c-------ccccc---hHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV----------IQVADM------F-------SKFYG---EAEFRLKAAFD 66 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~----------v~~~~~------~-------~~~~~---~~~~~l~~~~~ 66 (305)
+..+||+||+||||||+|+.+|+.+.+.... -.|..+ . ....+ .....++++.+
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e 117 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE 117 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHH
Confidence 4569999999999999999999998763210 011111 0 00001 11345555555
Q ss_pred HHH----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEE
Q psy5649 67 AAL----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIE 142 (305)
Q Consensus 67 ~~~----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~ 142 (305)
.+. ....-|++|||+|.+.. .....|+..++.. ...+++|.+++....+.+.+++ |. ..++
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~Lt~---------~a~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~S--Rc-~~ve 182 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHMLST---------AAFNAFLKTLEEP---PPHAIFIFATTELHKIPATIAS--RC-QRFN 182 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhhcCH---------HHHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHh--hc-eEEe
Confidence 543 23346999999987731 2234566666643 2335556666777788777777 44 6789
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
+..++..+....+...++..+..++.+.++.++..+.| +.+++...+..
T Consensus 183 f~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeK 231 (620)
T PRK14954 183 FKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQ 231 (620)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 99999999888888777777788999899999988765 44444444443
No 400
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=3.2e-10 Score=104.78 Aligned_cols=165 Identities=16% Similarity=0.268 Sum_probs=110.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE---Eecccc----------c-ccc-cchHHHHHHHHHHHHHh----CCC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV---IQVADM----------F-SKF-YGEAEFRLKAAFDAALD----HAP 73 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~---v~~~~~----------~-~~~-~~~~~~~l~~~~~~~~~----~~~ 73 (305)
+..+||+||+|+||||+|+++|..+.+.-.. -.|..+ . .+. .......++.+.+.+.. ...
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~ 119 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKY 119 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCC
Confidence 4568999999999999999999988653210 011111 0 000 01123446666666553 334
Q ss_pred eEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHH
Q psy5649 74 SLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAA 153 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 153 (305)
.|++|||+|.+.. .....|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++..+...
T Consensus 120 KV~IIDEa~~LT~---------~A~NALLKtLEEP---P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~ 184 (725)
T PRK07133 120 KIYIIDEVHMLSK---------SAFNALLKTLEEP---PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVS 184 (725)
T ss_pred EEEEEEChhhCCH---------HHHHHHHHHhhcC---CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHH
Confidence 6999999998732 2344566666642 4456677777888899888887 66 579999999999999
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 154 ILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 154 i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.+...+.+.+...+.+.++.++..+.| +.+++..++.+.
T Consensus 185 ~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 185 RLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 888888777778888788888877664 334444444443
No 401
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.27 E-value=3.2e-12 Score=99.13 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=52.7
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
...+|+++.++++.+ ++++.++..+++|||++..|..+.+.+.+.+.+. ..+.++++|+.
T Consensus 89 ~~~LS~G~~~rv~la---------ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~ 148 (166)
T cd03223 89 DDVLSGGEQQRLAFA---------RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRP 148 (166)
T ss_pred CCCCCHHHHHHHHHH---------HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCCh
Confidence 578999999999999 9999999999999999999999999999998876 24567777764
No 402
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=8e-14 Score=115.98 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=57.9
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... ..+.++++|+..
T Consensus 143 ~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 209 (253)
T PRK14267 143 LNDYPSNLSGGQRQRLVIA---------RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA 209 (253)
T ss_pred hccChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH
Confidence 4556778999999999999 999999999999999999999999999999998854 456777888643
No 403
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.1e-13 Score=115.38 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+..+.. ..+.++++|+..
T Consensus 143 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 210 (259)
T PRK14260 143 KLNKSALGLSGGQQQRLCIA---------RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ 210 (259)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 45566789999999999999 999999999999999999999999999999998865 366777888643
No 404
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3.3e-10 Score=104.57 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=108.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe--------------------------EEEEecccccccccchHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH--------------------------TVVIQVADMFSKFYGEAEFRLKAAFD 66 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~--------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~ 66 (305)
+..+||+||+|+||||+++++|+.+.+. +++++.. .......++++++
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~ 111 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIE 111 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHH
Confidence 3578999999999999999999988653 1222211 1233456777776
Q ss_pred HHHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEE
Q psy5649 67 AALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIE 142 (305)
Q Consensus 67 ~~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~ 142 (305)
.+... ...|++|||+|.+-. .....|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..++
T Consensus 112 ~a~~~p~~~~~KViIIDEad~Lt~---------~a~naLLK~LEeP---p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~ 176 (620)
T PRK14948 112 RAQFAPVQARWKVYVIDECHMLST---------AAFNALLKTLEEP---PPRVVFVLATTDPQRVLPTIIS--RC-QRFD 176 (620)
T ss_pred HHhhChhcCCceEEEEECccccCH---------HHHHHHHHHHhcC---CcCeEEEEEeCChhhhhHHHHh--he-eEEE
Confidence 66532 345999999997731 2334566666642 3456667777778888888887 65 6688
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
++.++..+....+.....+....++.+.++.++..+.|-. +++..++..
T Consensus 177 f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r~A~~lLek 225 (620)
T PRK14948 177 FRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-RDAESLLDQ 225 (620)
T ss_pred ecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 8888888877777767777777788888888888876643 444444443
No 405
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.4e-13 Score=114.40 Aligned_cols=68 Identities=19% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+...+.+.+.++.. ..+.++++|...
T Consensus 140 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~ 207 (251)
T PRK14270 140 DLKKSALKLSGGQQQRLCIA---------RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ 207 (251)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH
Confidence 34566789999999999999 999999999999999999999999999999998865 356677777543
No 406
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.26 E-value=4.6e-13 Score=109.44 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+...+.+.+.+....+.+.++++|..
T Consensus 136 ~~~~~~~~LS~G~~qrl~la---------ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 136 IGGNLVKGISGGERRRVSIA---------VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred hhcccccCcCHHHHHHHHHH---------HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 34456678999999999999 999999999999999999999999999999998765566777777764
No 407
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.6e-13 Score=115.18 Aligned_cols=68 Identities=16% Similarity=0.074 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 154 ~~~~~~~~LSgGq~qrv~LA---------raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~ 221 (274)
T PRK14265 154 KLKEKGTALSGGQQQRLCIA---------RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ 221 (274)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 44566788999999999999 999999999999999999999999999999998865 456677888653
No 408
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.6e-10 Score=96.25 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=119.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCe-----EEEEecccccccc---------------cch-HHHHHHHHHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVH-----TVVIQVADMFSKF---------------YGE-AEFRLKAAFDAAL 69 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~-----~~~v~~~~~~~~~---------------~~~-~~~~l~~~~~~~~ 69 (305)
..+.+++++||+|||||+.++.+++++.-. +++|||......+ .|. ....+..+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 445569999999999999999999988544 7899986653221 111 1222333344433
Q ss_pred h-CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC---CCCCccccCCCCcceEEEccC
Q psy5649 70 D-HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL---DNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 70 ~-~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~---~~l~~~l~~~~r~~~~i~~~~ 145 (305)
. ....|+++||+|.+..... ..+-.++...... ...+.+|+.+|.. +.+++.+.+.-. ..+|.|++
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~------~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s~l~-~~~I~F~p 189 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG------EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKSSLG-PSEIVFPP 189 (366)
T ss_pred hcCCeEEEEEcchhhhccccc------hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhhccC-cceeeeCC
Confidence 3 3456999999999986543 2333333333322 4667888888875 466777776312 34599999
Q ss_pred CCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcCCCcHHhHHH---HHHHHHHHHhhhhcCCCccccHHHHHHHhh
Q psy5649 146 PSRDQRAAILHCLLTK--VPHSLSTDQIQQVAFITHGFVGGDLAT---LLSNATSALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~g~~~~di~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
.+..|...|+....+. ....++++.++.+|... +...+|.+. +++.|...+-.+ ....++.+++.++..
T Consensus 190 Y~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~-a~~~GDAR~aidilr~A~eiAe~~---~~~~v~~~~v~~a~~ 263 (366)
T COG1474 190 YTAEELYDILRERVEEGFSAGVIDDDVLKLIAALV-AAESGDARKAIDILRRAGEIAERE---GSRKVSEDHVREAQE 263 (366)
T ss_pred CCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHH-HHcCccHHHHHHHHHHHHHHHHhh---CCCCcCHHHHHHHHH
Confidence 9999999999876653 34556776777766332 222224333 444444433322 334455556655533
No 409
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=4.1e-12 Score=101.08 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+|+++.++++.+ ++++.++..+++|||++..|..+.+.+.+.+.+....+.+.++++|+.
T Consensus 108 ~LSgGe~qrv~la---------~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~ 168 (192)
T cd03232 108 GLSVEQRKRLTIG---------VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168 (192)
T ss_pred cCCHHHhHHHHHH---------HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 7999999999999 999999999999999999999999999999998865566777788864
No 410
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.26 E-value=4.6e-10 Score=97.08 Aligned_cols=194 Identities=20% Similarity=0.268 Sum_probs=120.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
..+.++||||.|+|||+|+++++++. +..+++++..+....+.......-..-|+.-. +--+++|||++.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 35679999999999999999999865 23566666554443332222222222333333 344899999998764
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCC---ccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD---VSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~---~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
+... -..++..+..+.+ .+..+++.....|.++. +.+++ ||. ..+++.+|+.+.|.+|++...+.
T Consensus 190 k~~~-------qeefFh~FN~l~~-~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 190 KERT-------QEEFFHTFNALLE-NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred ChhH-------HHHHHHHHHHHHh-cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 4221 2234444444444 33344555545566554 56666 664 56899999999999999988888
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
.+..++.+.+..++.... -+.+++..++.+....+.... ..++...+.++++....
T Consensus 260 ~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~----~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 260 RGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK----RAITIDLVKEILKDLLR 315 (408)
T ss_pred cCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC----ccCcHHHHHHHHHHhhc
Confidence 899999988888886632 345555555555544443221 14555555555555543
No 411
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.26 E-value=9e-13 Score=107.42 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=55.4
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.....+|+|+.++++.+ ++++.++..+++|||+..+|..+.+.+.+.+.+... ..+.++++|..
T Consensus 135 ~~~~~LS~G~~qr~~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 198 (221)
T cd03244 135 EGGENLSVGQRQLLCLA---------RALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRL 198 (221)
T ss_pred cCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 45678999999999999 999999999999999999999999999999998764 35566777753
No 412
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.9e-13 Score=114.71 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+... +.+.++++|+..
T Consensus 160 ~~~~~~~~LSgGe~qrv~la---------raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~ 227 (271)
T PRK14238 160 RLHDNAYGLSGGQQQRLCIA---------RCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ 227 (271)
T ss_pred HHhcCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH
Confidence 45667789999999999999 999999999999999999999999999999988865 456677777543
No 413
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.25 E-value=3.5e-12 Score=102.61 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=53.8
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHH-HhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMR-ALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~ 234 (305)
.....+|+++.++++.+ ++++.++..+++|||++..|....+.+.+ .+......+.+.++++|..
T Consensus 123 ~~~~~lS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 123 EKGINLSGGQKQRISLA---------RAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred CCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 34578999999999999 99999999999999999999998888887 4565544466777788764
No 414
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=7.4e-13 Score=103.33 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=52.1
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+|+++.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.+... ..+.++++|+.
T Consensus 97 LS~G~~~rl~la---------~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 155 (171)
T cd03228 97 LSGGQRQRIAIA---------RALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL 155 (171)
T ss_pred hCHHHHHHHHHH---------HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 999999999999 999999999999999999999999999999988864 45667777764
No 415
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=4.8e-13 Score=110.15 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=56.6
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... +.+.++++|..
T Consensus 132 ~~~~~~LS~G~~~rl~la---------~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 132 GERGLKLSGGEKQRVAIA---------RAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred hcCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 344568999999999999 999999999999999999999999999999998876 66677777754
No 416
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=2.4e-12 Score=99.54 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=54.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH------HHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhcc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATS------ALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVE 231 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (305)
+..+....+|+|+.|++..+ +.|++-... +.+|||++.+|......+.+..+++...+..+..+-
T Consensus 128 la~R~y~~LSGGEqQRVqlA---------RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VL 198 (259)
T COG4559 128 LAGRDYRTLSGGEQQRVQLA---------RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVL 198 (259)
T ss_pred hhccchhhcCchHHHHHHHH---------HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44455668999999999988 777665443 356999999999999999999999987776666677
Q ss_pred CCCC
Q psy5649 232 VPNV 235 (305)
Q Consensus 232 ~~~~ 235 (305)
|+..
T Consensus 199 HDLN 202 (259)
T COG4559 199 HDLN 202 (259)
T ss_pred ccch
Confidence 7654
No 417
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.25 E-value=4.1e-12 Score=96.03 Aligned_cols=57 Identities=25% Similarity=0.215 Sum_probs=49.8
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+|.++.++++.+ ++++.++..+++|||+.+.|..+...+.+.+++.. .+.++++|+.
T Consensus 71 lS~G~~~rv~la---------ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~ 127 (144)
T cd03221 71 LSGGEKMRLALA---------KLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDR 127 (144)
T ss_pred CCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCH
Confidence 999999999999 99999999999999999999999999999998763 3566677753
No 418
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=1.2e-13 Score=114.80 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 141 ~~~~~~~LS~Gq~qr~~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 207 (251)
T PRK14251 141 LDRNAQAFSGGQQQRICIA---------RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ 207 (251)
T ss_pred hccChhhCCHHHHHHHHHH---------HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH
Confidence 4556778999999999999 999999999999999999999999999999998854 456777888653
No 419
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.25 E-value=5.4e-13 Score=108.68 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+|+|++++++.+ ++++.++..+++|||++++|..+...+.+.+.++... .+.++++|+.
T Consensus 139 ~~LSgG~~qrl~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~ 199 (220)
T cd03245 139 RGLSGGQRQAVALA---------RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRP 199 (220)
T ss_pred ccCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCH
Confidence 58999999999999 9999999999999999999999999999999988654 5667778764
No 420
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.5e-13 Score=112.78 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++.....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+... ..+.++++|...
T Consensus 138 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~ 205 (249)
T PRK14253 138 RLKSHAFGLSGGQQQRLCIA---------RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ 205 (249)
T ss_pred HhhcCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH
Confidence 45566788999999999999 999999999999999999999999999999998865 356777888643
No 421
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.25 E-value=7.4e-13 Score=122.63 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+..+|+|+.|+++.+ +++++++..+++|||++..|..+.+.+.+.+.+..+ +.+.++++|...
T Consensus 472 ~g~~LSgGqrqRialA---------Rall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~ 535 (574)
T PRK11160 472 GGRQLSGGEQRRLGIA---------RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLT 535 (574)
T ss_pred CCCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChh
Confidence 4567999999999999 999999999999999999999999999999988754 456777777643
No 422
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.2e-13 Score=113.60 Aligned_cols=66 Identities=18% Similarity=0.086 Sum_probs=56.4
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+.....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... +.+.++++|+..
T Consensus 144 ~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~ 209 (261)
T PRK14263 144 KVSGLSLSGGQQQRLCIA---------RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ 209 (261)
T ss_pred hCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 345668999999999999 999999999999999999999999999999998854 456667777543
No 423
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.7e-13 Score=112.57 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+.+... +.+.++++|...
T Consensus 139 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 206 (250)
T PRK14266 139 KLDKSALGLSGGQQQRLCIA---------RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ 206 (250)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH
Confidence 34566788999999999999 999999999999999999999999999999998854 556777777643
No 424
>KOG0732|consensus
Probab=99.24 E-value=7.1e-12 Score=117.92 Aligned_cols=66 Identities=39% Similarity=0.730 Sum_probs=62.5
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
.....|+++||+++++..++|++..|+.|++.|..+++.+|+|+||+||||||||+.|+++|..+-
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s 324 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACS 324 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhc
Confidence 355789999999999999999999999999999999999999999999999999999999998763
No 425
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=2.7e-13 Score=112.57 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+...+.+.+.++.. ..+.++++|+..
T Consensus 139 ~~~~~~~~LS~Gq~qr~~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~ 206 (250)
T PRK14262 139 ELNKPGTRLSGGQQQRLCIA---------RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG 206 (250)
T ss_pred HHhCChhhcCHHHHHHHHHH---------HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH
Confidence 35566788999999999999 999999999999999999999999999999998864 456677878643
No 426
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.24 E-value=8.2e-13 Score=121.50 Aligned_cols=64 Identities=23% Similarity=0.141 Sum_probs=56.1
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+..+|+|++|+++.+ +++++++..+++|||++..|..+.+.+.+.+.+..+ +.+.++++|+.
T Consensus 454 e~g~~LSgGq~qri~la---------Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~ 517 (529)
T TIGR02857 454 EGGAGLSGGQAQRLALA---------RAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQ-GRTVLLVTHRL 517 (529)
T ss_pred cccccCCHHHHHHHHHH---------HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 34567999999999999 999999999999999999999999999999988753 56777888864
No 427
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=7.4e-13 Score=108.92 Aligned_cols=65 Identities=20% Similarity=0.122 Sum_probs=56.1
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++.. +.+.++++|..
T Consensus 133 ~~~~~~LS~G~~qrv~la---------~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 197 (234)
T cd03251 133 GERGVKLSGGQRQRIAIA---------RALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRL 197 (234)
T ss_pred ccCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 344678999999999999 999999999999999999999999999999998864 55667777754
No 428
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.24 E-value=9e-14 Score=127.09 Aligned_cols=69 Identities=12% Similarity=0.048 Sum_probs=59.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.++.+.++|+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.++...+.+.++++|+...
T Consensus 403 ~~~~~~~LSgGq~qrv~lA---------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 403 VNQNITELSGGNQQKVLIS---------KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred ccCccccCChHHHHHHHHH---------HHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 3445678999999999999 99999999999999999999999999999999886556778888887543
No 429
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.24 E-value=4.7e-14 Score=121.10 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+..+|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 93 ~~~~~~~~LSgGq~qRvala---------raL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 93 FADRKPHQLSGGQQQRVALA---------RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667788999999999999 9999999999999999999999999999999887654 567778888654
No 430
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=1.9e-13 Score=113.61 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... ..+.++++|+..
T Consensus 141 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~ 208 (252)
T PRK14239 141 RLHDSALGLSGGQQQRVCIA---------RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ 208 (252)
T ss_pred HHhcCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH
Confidence 45667788999999999999 999999999999999999999999999999998854 456777888653
No 431
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.24 E-value=1.1e-11 Score=97.82 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=43.9
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
....++|+.|+++++..+.-.+.......+ ....++|||||||||||||+.||++++.+|...
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~--------~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGE--------ALDHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCC--------CcceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 456899999999999988766553222111 223499999999999999999999999998764
No 432
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.1e-13 Score=109.04 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=56.1
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+....+|+|+.++++.+ ++++.++..+++|||+..+|..+.+.+.+.+..... +.+.++++|..
T Consensus 134 ~~~~~~LS~G~~~rv~la---------~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 198 (229)
T cd03254 134 GENGGNLSQGERQLLAIA---------RAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRL 198 (229)
T ss_pred hcCCCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 344678999999999999 999999999999999999999999999999998853 56667777754
No 433
>KOG0741|consensus
Probab=99.24 E-value=5.8e-10 Score=97.25 Aligned_cols=162 Identities=18% Similarity=0.227 Sum_probs=112.1
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE-ecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI-QVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
...+-..+||.||+|+|||+||-.+|.....+|+.+ ++.++.+-.....-..+...|+.|.++.-+|+++|+++.++.=
T Consensus 534 ~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 534 ERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred ccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc
Confidence 334445799999999999999999999999999875 5566665555555678999999999999999999999998753
Q ss_pred CCCch-hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCc-cccCCCCcceEEEccCCCH-HHHHHHHHHHHhcCCC
Q psy5649 88 RNRSD-QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDV-SLRTPGRLDQEIELPVPSR-DQRAAILHCLLTKVPH 164 (305)
Q Consensus 88 ~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~-~l~~~~r~~~~i~~~~p~~-~~r~~i~~~~l~~~~~ 164 (305)
-.-.+ .++-.+..++-.+...+......++++||+..+-+.. .+.. .|+.++++|..+. .+...++.. + .
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~~-~----n 686 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLEE-L----N 686 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHHH-c----c
Confidence 33222 2344555666667766665567777887776554322 1222 6888899887765 555555542 2 2
Q ss_pred CCCHHhHHHHHHH
Q psy5649 165 SLSTDQIQQVAFI 177 (305)
Q Consensus 165 ~ls~~~~~~la~~ 177 (305)
.+++++.+..+..
T Consensus 687 ~fsd~~~~~~~~~ 699 (744)
T KOG0741|consen 687 IFSDDEVRAIAEQ 699 (744)
T ss_pred CCCcchhHHHHHH
Confidence 2444455555443
No 434
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.3e-12 Score=97.44 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=99.1
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc---
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV--- 83 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~--- 83 (305)
++.++.|+.+.|+||+|+||||++|.|=+...++.+.+ ++...+.
T Consensus 31 slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I--------------------------------~v~H~g~~vd 78 (235)
T COG4778 31 SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI--------------------------------LVRHEGEWVD 78 (235)
T ss_pred eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE--------------------------------EEEeCcchhh
Confidence 46788999999999999999999999987766655444 1111111
Q ss_pred ccCCCCC--chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhc
Q psy5649 84 LCTGRNR--SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 84 l~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
++..... ....++.+....+++.-++. + ...+-+...+...|...+.-.-..-+...|+.+-+.+.+-
T Consensus 79 l~~a~pr~vl~vRr~TiGyVSQFLRviPR-------V---~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L 148 (235)
T COG4778 79 LVTAEPREVLEVRRTTIGYVSQFLRVIPR-------V---SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL 148 (235)
T ss_pred hhccChHHHHHHHHhhhHHHHHHHHhccC-------c---chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC
Confidence 1111110 12222333333333332221 1 1112222222222211111111111222333333334444
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhh
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQV 228 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 228 (305)
.|..+|+|+.|++.++ +.++.+-..+++|||++.+|.....-+.+.++..+..+...+
T Consensus 149 aPaTFSGGEqQRVNIa---------Rgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlv 206 (235)
T COG4778 149 APATFSGGEQQRVNIA---------RGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALV 206 (235)
T ss_pred CCcccCCchheehhhh---------hhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEE
Confidence 5778999999999998 889999999999999999999988888888887776655443
No 435
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.3e-11 Score=97.82 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=57.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc--hhhhhhccCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS--AMRQVLVEVP 233 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ 233 (305)
+.++....+|.|+.+++-.+ ++++.+|..+++|||.++.|....+.+.+.+.++... ..+.++++|.
T Consensus 164 la~r~~~~LS~Ge~rrvLia---------RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 164 LADRPFGSLSQGEQRRVLIA---------RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred hccCchhhcCHhHHHHHHHH---------HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 34455668999999999999 9999999999999999999999999999999888655 5566777774
No 436
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.23 E-value=2.9e-13 Score=112.08 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=57.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHH-------HHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLS-------NATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLV 230 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (305)
.+++....+|+|+.++++.+ ++++. ++..+++|||+.++|......+.+.+.++...+.+.+++
T Consensus 119 ~~~~~~~~LS~G~~qrv~la---------~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~ 189 (248)
T PRK03695 119 KLGRSVNQLSGGEWQRVRLA---------AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189 (248)
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45666788999999999998 88886 568888999999999999999999999886556677788
Q ss_pred cCCCC
Q psy5649 231 EVPNV 235 (305)
Q Consensus 231 ~~~~~ 235 (305)
+|+..
T Consensus 190 sH~~~ 194 (248)
T PRK03695 190 SHDLN 194 (248)
T ss_pred ecCHH
Confidence 88654
No 437
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.23 E-value=7e-14 Score=128.32 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
..++.+..+|+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+...
T Consensus 418 ~~~~~~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 418 TRHRYPAEFSGGQRQRIAIA---------RALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred HHhcCCccCCHHHHHHHHHH---------HHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 45667789999999999999 9999999999999999999999999999999988654 5677888887543
No 438
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.23 E-value=4.8e-14 Score=107.81 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=60.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (305)
..++...++|+|+.+++-.+ ++|+.+|...++|||.++.|+++..|+.+.+..++..+....+.+|.
T Consensus 132 lr~~~a~sLSGGERRR~EIA---------RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN 198 (243)
T COG1137 132 LRDSKAYSLSGGERRRVEIA---------RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN 198 (243)
T ss_pred HhcCcccccccchHHHHHHH---------HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc
Confidence 44556778999999999999 99999999999999999999999999999999999988888887774
No 439
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.6e-13 Score=115.24 Aligned_cols=68 Identities=18% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+...+.+.+.+... ..+.++++|+..
T Consensus 161 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~ 228 (272)
T PRK14236 161 RLHENAFGLSGGQQQRLVIA---------RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ 228 (272)
T ss_pred HhhCCcccCCHHHHHHHHHH---------HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH
Confidence 34566788999999999999 999999999999999999999999999999998865 456677777653
No 440
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.6e-13 Score=112.86 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=57.5
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+..+..+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++.. ..+.++++|...
T Consensus 147 ~~~~~~~LS~G~~qrl~la---------ral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~ 213 (257)
T PRK14246 147 LNSPASQLSGGQQQRLTIA---------RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ 213 (257)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH
Confidence 3456678999999999999 999999999999999999999999999999988864 466777877643
No 441
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.7e-13 Score=114.56 Aligned_cols=68 Identities=18% Similarity=0.109 Sum_probs=58.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 175 ~~~~~~~~LSgGq~qrv~LA---------raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~ 242 (286)
T PRK14275 175 RLDKNALGLSGGQQQRLCVA---------RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ 242 (286)
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 44666788999999999999 999999999999999999999999999999988865 356677777543
No 442
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=5.6e-10 Score=105.94 Aligned_cols=169 Identities=21% Similarity=0.294 Sum_probs=109.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccccc------------ccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK------------FYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
..++|+||+|||||++++++|..++.+++.+++++.... +.|.. .-..+.+..+.+..+|++|||+
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~--~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFE--QGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccc--hhhHHHHHHHhCCCeEEEEech
Confidence 358999999999999999999999999999988765331 11111 1112333444566789999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhhc--cc------CCeEEEEEEecCCCC-------------------------CC
Q psy5649 82 DVLCTGRNRSDQERRLLSCLVTQVDRLH--EL------QACVVLLAVTTSLDN-------------------------VD 128 (305)
Q Consensus 82 d~l~~~~~~~~~~~~~~~~l~~~~~~~~--~~------~~~~~~i~~t~~~~~-------------------------l~ 128 (305)
|.+.+ .....|++.++.-. +. -.+.++|.|+|.... +.
T Consensus 563 eka~~---------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~ 633 (731)
T TIGR02639 563 EKAHP---------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFS 633 (731)
T ss_pred hhcCH---------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcC
Confidence 96532 23344555554311 10 134567777776321 23
Q ss_pred ccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC---------CCCCCHHhHHHHHHH--cCCCcHHhHHHHHHHHHH
Q psy5649 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV---------PHSLSTDQIQQVAFI--THGFVGGDLATLLSNATS 195 (305)
Q Consensus 129 ~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~---------~~~ls~~~~~~la~~--t~g~~~~di~~l~~~~~~ 195 (305)
+.+.+ |++..+.|.+.+..+...|++..+++. ...++++.++.++.. ...|-++.|+.++++...
T Consensus 634 pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 634 PEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred hHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 33443 899999999999999999998766531 234566677777764 344556777776666543
No 443
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.22 E-value=9.6e-13 Score=121.30 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|++|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.+....+.+.++++|+.
T Consensus 451 ~g~~LSgGq~qrl~lA---------Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 451 GGATLSGGQRQRIALA---------RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP 514 (544)
T ss_pred CcCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence 3567999999999999 999999999999999999999999999999988754456777788764
No 444
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.22 E-value=8e-13 Score=125.63 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+..+|+||+|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.+ .+.+.++++|+..
T Consensus 612 ~G~~LSGGQrQRiaLA---------Rall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~ 673 (710)
T TIGR03796 612 GGANLSGGQRQRLEIA---------RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS 673 (710)
T ss_pred CCCCCCHHHHHHHHHH---------HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH
Confidence 3567999999999999 999999999999999999999999999999876 2567777888643
No 445
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.22 E-value=8.9e-14 Score=115.67 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+.... +.+.++++|...
T Consensus 133 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~ 202 (254)
T PRK10418 133 VLKLYPFEMSGGMLQRMMIA---------LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG 202 (254)
T ss_pred hhhcCCcccCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 34566778999999999999 9999999999999999999999999999999887543 566777887643
No 446
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.22 E-value=1.8e-12 Score=120.44 Aligned_cols=62 Identities=23% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+|+++.+ +++++++..+++|||++..|..+.+.+.+.+.+..+ +.+.++++|+.
T Consensus 467 g~~LSgGqrQRiaLA---------Rall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~ 528 (571)
T TIGR02203 467 GVLLSGGQRQRLAIA---------RALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRL 528 (571)
T ss_pred CCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhh
Confidence 346999999999999 999999999999999999999999999999988744 45677788864
No 447
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.1e-13 Score=126.39 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=59.4
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
++.+.++|+|++|+++.+ ++++.++..+++|||++++|..+.+.+.+.+..+...+.+.++++|+...
T Consensus 400 ~~~~~~LSgG~kqrv~lA---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~ 467 (506)
T PRK13549 400 ELAIARLSGGNQQKAVLA---------KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE 467 (506)
T ss_pred ccccccCCHHHHHHHHHH---------HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 445678999999999999 99999999999999999999999999999999886666778888886543
No 448
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=2.5e-13 Score=114.10 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||+...|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 157 l~~~~~~LSgGq~qrl~LA---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~ 223 (276)
T PRK14271 157 LSDSPFRLSGGQQQLLCLA---------RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA 223 (276)
T ss_pred hhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 4456778999999999999 999999999999999999999999999999998865 366777888654
No 449
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.22 E-value=1.3e-12 Score=121.74 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=54.9
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|++|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.+..+ ..+.++++|+.
T Consensus 473 ~g~~LSGGqrQRialA---------RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~ 535 (592)
T PRK10790 473 QGNNLSVGQKQLLALA---------RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL 535 (592)
T ss_pred CCCCCCHHHHHHHHHH---------HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 3457999999999999 999999999999999999999999999999988755 35677788754
No 450
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.22 E-value=1.9e-12 Score=107.43 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=54.6
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+.
T Consensus 145 ~LS~G~~qrv~la---------ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 145 GFSGGEKKRNDIL---------QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred CCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6999999999999 999999999999999999999999999999988765566777888864
No 451
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.2e-13 Score=125.85 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=60.4
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
++.+..+|+|++++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+....
T Consensus 391 ~~~~~~LSgGq~qrl~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 459 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILG---------RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEV 459 (501)
T ss_pred cCccccCCHHHHHHHHHH---------HHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 445678999999999999 999999999999999999999999999999998876677788899976443
No 452
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.22 E-value=1.1e-12 Score=121.48 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=53.7
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+|+++.+ ++++++|..+++||+++..|..+...+.+++...... .+.+++.|..
T Consensus 463 G~~LSgGQrQrlaiA---------Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~-rT~iiIaHRl 524 (567)
T COG1132 463 GVNLSGGQRQRLAIA---------RALLRNPPILILDEATSALDTETEALIQDALKKLLKG-RTTLIIAHRL 524 (567)
T ss_pred CccCCHHHHHHHHHH---------HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcC-CEEEEEeccH
Confidence 457999999999999 9999999999999999999999999999999866633 4566677754
No 453
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.21 E-value=2e-11 Score=103.15 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=106.5
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.++..+.|+|.+||||||+.++|.+.+... +.+ .++.-+.-
T Consensus 307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I--------------------------------~F~G~~i~-- 351 (534)
T COG4172 307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI--------------------------------RFDGQDID-- 351 (534)
T ss_pred eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE--------------------------------EECCcccc--
Confidence 4667899999999999999999999999877655 444 12211110
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCc--ceEEEccCCCHHHHHHHHH--------
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRL--DQEIELPVPSRDQRAAILH-------- 156 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~--~~~i~~~~p~~~~r~~i~~-------- 156 (305)
...++.+.-+-..++ +.--.....++|.+.-.... ...+.-+.++..+|.+-..
T Consensus 352 -----~~~~~~mrplR~~mQ-----------vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 352 -----GLSRKEMRPLRRRMQ-----------VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred -----ccChhhhhhhhhhce-----------EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 000111111111110 01113333333322100000 0123445566666665442
Q ss_pred --HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCC
Q psy5649 157 --CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVP 233 (305)
Q Consensus 157 --~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 233 (305)
....++|+++|+|+.|++|++ ++++.++...++|||++.+|..-...+.+.++.++.. +.+.+.++|+
T Consensus 416 Dp~~r~RYPhEFSGGQRQRIAIA---------RAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 416 DPATRNRYPHEFSGGQRQRIAIA---------RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred ChhHhhcCCcccCcchhhHHHHH---------HHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 345578999999999999999 9999999999999999999998888888888888654 5566677775
Q ss_pred C
Q psy5649 234 N 234 (305)
Q Consensus 234 ~ 234 (305)
.
T Consensus 487 L 487 (534)
T COG4172 487 L 487 (534)
T ss_pred H
Confidence 4
No 454
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=2e-13 Score=114.46 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 157 ~~~~~~~~LSgGq~qrl~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 157 RLHSSALSLSGGQQQRLCIA---------RTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred HHhcCcccCCHHHHHHHHHH---------HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 45667789999999999999 999999999999999999999999999999998854 356677777644
No 455
>KOG0066|consensus
Probab=99.21 E-value=9.9e-13 Score=111.96 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=52.7
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++....+|++...+++.+ ++|+.++..+.+|+|+..+|.-.+-++-+.++--+. +-++++|+...+++
T Consensus 407 ~rPt~kFSGGWRMRvSLA---------RALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 407 ERPTTKFSGGWRMRVSLA---------RALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQGFLDS 474 (807)
T ss_pred cCCccccCCceeeehhHH---------HHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEecccchHHH
Confidence 344457899999999988 999999999999999999988777777777665543 34567776666665
Q ss_pred c
Q psy5649 240 I 240 (305)
Q Consensus 240 i 240 (305)
+
T Consensus 475 V 475 (807)
T KOG0066|consen 475 V 475 (807)
T ss_pred H
Confidence 4
No 456
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.4e-13 Score=110.34 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... +.+.++++|+..
T Consensus 140 ~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 206 (250)
T PRK14245 140 LKESAFALSGGQQQRLCIA---------RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred hhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 4556778999999999999 999999999999999999999999999999998854 466777888643
No 457
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=7.5e-10 Score=87.82 Aligned_cols=143 Identities=13% Similarity=0.203 Sum_probs=93.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
.+..+||+||+|+|||++++.++..+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34579999999999999999999887432 22222111 0 1123455555555
Q ss_pred HHh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+.. ....|++|||+|.+.. .....++..++.. .....+|.+++....+.+++++ |. ..+++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~---------~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE---------AAANALLKTLEEP---PPNTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH---------HHHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 543 3456999999987632 1233456666542 2344455666777888888888 55 58999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCC
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHG 180 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g 180 (305)
+.|+..+...++... .++.+.++.++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~------gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ------GISEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc------CCCHHHHHHHHHHcCC
Confidence 999999988877643 2667777777766554
No 458
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.21 E-value=1e-12 Score=124.31 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.... .+.++++|..
T Consensus 586 G~~LSGGQrQRialA---------RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~---~T~IiItHr~ 645 (686)
T TIGR03797 586 GGTLSGGQRQRLLIA---------RALVRKPRILLFDEATSALDNRTQAIVSESLERLK---VTRIVIAHRL 645 (686)
T ss_pred CCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC---CeEEEEecCh
Confidence 457999999999999 99999999999999999999999999999998862 4667788864
No 459
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.21 E-value=2e-12 Score=97.36 Aligned_cols=73 Identities=19% Similarity=0.137 Sum_probs=64.3
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
.+.+|..+|+++.|++|++ ++|+.++...++|||++.+|+.-.-++.+.++++...+.+.+.++|.+....
T Consensus 146 ~~~YP~~LSGGQQQR~aIA---------RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR 216 (256)
T COG4598 146 ADAYPAHLSGGQQQRVAIA---------RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR 216 (256)
T ss_pred hhcCccccCchHHHHHHHH---------HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHH
Confidence 3467889999999999999 9999999999999999999999999999999999888888888988765444
Q ss_pred cc
Q psy5649 239 DI 240 (305)
Q Consensus 239 ~i 240 (305)
++
T Consensus 217 ~V 218 (256)
T COG4598 217 DV 218 (256)
T ss_pred hh
Confidence 43
No 460
>KOG0057|consensus
Probab=99.21 E-value=1.9e-12 Score=113.10 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=56.2
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+..+|+||.|+++.+ ++++.+|..+++||+++.+|..+..++.+.+.. ..++.+.+.+-|+..
T Consensus 483 erG~~LSGGekQrvsla---------Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ 547 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLA---------RAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD 547 (591)
T ss_pred hcccccccchHHHHHHH---------HHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch
Confidence 34667999999999999 999999999999999999999999999999988 455677777777543
No 461
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.2e-13 Score=111.61 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+..+.. ..+.++++|...
T Consensus 143 ~~~~~~~LS~G~~qrv~la---------ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~ 209 (253)
T PRK14261 143 LHDSALSLSGGQQQRLCIA---------RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ 209 (253)
T ss_pred hhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH
Confidence 4566778999999999999 999999999999999999999999999999988865 356677777643
No 462
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.20 E-value=1.2e-12 Score=124.29 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+..+|+||+|+++.+ +++++++..+++|||+++.|..+.+.+.+.+...+ +.+.++++|+..
T Consensus 608 ~G~~LSgGQrQRialA---------Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~--~~T~IiitHr~~ 670 (708)
T TIGR01193 608 EGSSISGGQKQRIALA---------RALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ--DKTIIFVAHRLS 670 (708)
T ss_pred CCCCCCHHHHHHHHHH---------HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCEEEEEecchH
Confidence 3567999999999999 99999999999999999999999999999998752 456777888653
No 463
>PRK13409 putative ATPase RIL; Provisional
Probab=99.20 E-value=3.2e-12 Score=117.84 Aligned_cols=77 Identities=23% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhh
Q psy5649 149 DQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQ 227 (305)
Q Consensus 149 ~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 227 (305)
.+++++. ...++.+.+||+|++|+++.+ ++++.++..+++|||++++|..+...+.+.++++... +.+.
T Consensus 438 L~~l~l~-~~~~~~~~~LSGGe~QRvaiA---------raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 438 IKPLQLE-RLLDKNVKDLSGGELQRVAIA---------ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHHCCCH-HHHhCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 3444443 356778889999999999999 9999999999999999999999999999999988553 5677
Q ss_pred hhccCCCC
Q psy5649 228 VLVEVPNV 235 (305)
Q Consensus 228 ~~~~~~~~ 235 (305)
++++|+..
T Consensus 508 iivsHD~~ 515 (590)
T PRK13409 508 LVVDHDIY 515 (590)
T ss_pred EEEeCCHH
Confidence 88888754
No 464
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.9e-10 Score=102.39 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=118.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEE---E--Eeccc-----------ccc--cccchHHHHHHHHHHHHH----h
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTV---V--IQVAD-----------MFS--KFYGEAEFRLKAAFDAAL----D 70 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~---~--v~~~~-----------~~~--~~~~~~~~~l~~~~~~~~----~ 70 (305)
...++++||.|+||||++|.+|..+++.-. . ..|.. ++. .-.......++++.+.+. .
T Consensus 38 ~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~ 117 (515)
T COG2812 38 AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSE 117 (515)
T ss_pred hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcc
Confidence 346899999999999999999998876521 0 01111 100 001122344555555554 2
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHH
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
...-|.+|||++.+.. .... ..+..+.+....|.+|.+|+.++.++..+.+ |. ..+.+...+..+
T Consensus 118 ~ryKVyiIDEvHMLS~---------~afN---ALLKTLEEPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~ 182 (515)
T COG2812 118 GRYKVYIIDEVHMLSK---------QAFN---ALLKTLEEPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEE 182 (515)
T ss_pred ccceEEEEecHHhhhH---------HHHH---HHhcccccCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHH
Confidence 3445999999998742 2233 3344444556678899999999999999988 54 567888889999
Q ss_pred HHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHH
Q psy5649 151 RAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSA 196 (305)
Q Consensus 151 r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~ 196 (305)
....+...+.+.....+++.+..++.+.+| +.+|...++.++...
T Consensus 183 I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 183 IAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHHc
Confidence 999999999999999999999999988777 566777777776554
No 465
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.20 E-value=1.7e-12 Score=120.84 Aligned_cols=62 Identities=21% Similarity=0.190 Sum_probs=54.5
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+|++|+++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+..+ +.+.++++|+.
T Consensus 469 g~~LSgGq~QRialA---------Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~ 530 (588)
T PRK13657 469 GRQLSGGERQRLAIA---------RALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRL 530 (588)
T ss_pred CCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecH
Confidence 456999999999999 999999999999999999999999999999988754 46677788764
No 466
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.20 E-value=8.3e-10 Score=95.41 Aligned_cols=56 Identities=25% Similarity=0.388 Sum_probs=46.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccc-hHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYG-EAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~-~~~~~l~~~~~~~ 68 (305)
+.+++|+||||||||+++++||..++.+++.++++.+.. .+.| +.+..++.+|+.|
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 478999999999999999999999999999999887763 4555 4666666666655
No 467
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.20 E-value=1.3e-12 Score=123.87 Aligned_cols=63 Identities=27% Similarity=0.159 Sum_probs=55.3
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+||+|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.+..+ +.+.++++|+.
T Consensus 598 ~G~~LSgGQrQRlalA---------Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl 660 (694)
T TIGR03375 598 RGRSLSGGQRQAVALA---------RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRT 660 (694)
T ss_pred CCCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 3457999999999999 999999999999999999999999999999988764 45677778864
No 468
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.19 E-value=8.4e-12 Score=91.20 Aligned_cols=173 Identities=18% Similarity=0.180 Sum_probs=104.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+++.+-|.||+|||||||+..+++.+...|-.- + -++++|-+.-
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~-G----------------------------~~~l~~~~l~-- 70 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT-G----------------------------ELWLNEQRLD-- 70 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCccee-e----------------------------EEEECCeecc--
Confidence 57788999999999999999999999999887654221 1 1133332210
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCC--CCcceEEEccCCCHHHHHHHHHHHHhcCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTP--GRLDQEIELPVPSRDQRAAILHCLLTKVPH 164 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~--~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~ 164 (305)
.-+..++.+..+++. +. ++.--++.+++-+++... |+-. .--.....+|.++-. +..+.|.
T Consensus 71 ---~lPa~qRq~GiLFQD---------~l-LFphlsVg~Nl~fAlp~~~KG~aR---r~~a~aAL~~~gL~g-~f~~dP~ 133 (213)
T COG4136 71 ---MLPAAQRQIGILFQD---------AL-LFPHLSVGQNLLFALPATLKGNAR---RNAANAALERSGLDG-AFHQDPA 133 (213)
T ss_pred ---ccchhhhheeeeecc---------cc-cccccccccceEEecCcccccHHH---HhhHHHHHHHhccch-hhhcChh
Confidence 001112222222211 00 111123333333332210 1100 011224556666544 6677889
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh-hhcCCchhhhhhccCCCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL-DHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~ 236 (305)
.+|+++..+++.. +.++..+..+.+|||.+.+|..-.+.+.+.+ .+.+..+.-.+.++|+...
T Consensus 134 tlSGGQrARvaL~---------R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 134 TLSGGQRARVALL---------RALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred hcCcchHHHHHHH---------HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999998 9999999999999999999887777777654 3444445555667776443
No 469
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.19 E-value=2.2e-12 Score=107.28 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHhcCCC-CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPH-SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~-~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+. .+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+....+.+.++++|+..
T Consensus 143 ~~~~~~~~~LSgG~~qrv~la---------~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 143 FLSRNVNEGFSGGEKKRNEIL---------QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred hhccccccCCCHHHHHHHHHH---------HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 3444555 4999999999999 9999999999999999999999999999999888655667777888543
No 470
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4.4e-13 Score=111.34 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++.+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.+... +.+.++++|+..
T Consensus 143 ~~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 209 (251)
T PRK14244 143 LKDSAFELSGGQQQRLCIA---------RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK 209 (251)
T ss_pred hhcChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 3456678999999999999 999999999999999999999999999999988854 567777888654
No 471
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.19 E-value=3.5e-11 Score=97.85 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=55.0
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHH--HhhhcCCchhhhhhccCCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMR--ALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~ 235 (305)
.....+|+|+.++++.+ ++++.++..+++|||+.++|..+.+.+.+ .++.++..+.+.++++|+..
T Consensus 136 ~~~~~LS~G~~qrv~la---------ral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~ 203 (218)
T cd03290 136 ERGINLSGGQRQRICVA---------RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ 203 (218)
T ss_pred cCCCcCCHHHHHHHHHH---------HHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH
Confidence 34678999999999999 99999999999999999999999998887 56666555667777888643
No 472
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=3.3e-13 Score=112.21 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=58.0
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+++....+|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+++... ..+.++++|+..
T Consensus 142 ~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 208 (252)
T PRK14272 142 LKTPATGLSGGQQQRLCIA---------RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH 208 (252)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 4556778999999999999 999999999999999999999999999999998864 466677888644
No 473
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.6e-13 Score=113.90 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.....+..+|+|+.|+++.+ ++++.++..+++|||++..|..+...+.+.+..+.. ..+.++++|....
T Consensus 218 ~~~~~~~~LSgGqkqRl~LA---------RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~ 286 (329)
T PRK14257 218 DLDKAGNALSGGQQQRLCIA---------RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ 286 (329)
T ss_pred hhhCCcccCCHHHHHHHHHH---------HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 34567788999999999999 999999999999999999999999999999988865 4677778886543
No 474
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.18 E-value=1.9e-11 Score=103.26 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=49.2
Q ss_pred Ccccc-cchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 236 KWSDI-GGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 236 ~~~~i-~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.++++ ||+.-.+..++.......+ +.+...++++|.|++||||||||||++|+++|+++|.+||.|+
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 34444 6665555555544332211 1233478899999999999999999999999999999999986
No 475
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=1.3e-12 Score=103.44 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=61.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 236 (305)
..+....+++.++++++-.+ ++++.+|..+++|||.++..+...+++.+.+.+++.. +.+..+++|++..
T Consensus 142 ~a~~~A~~LsyG~qR~LEIA---------rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~ 212 (250)
T COG0411 142 LADRPAGNLSYGQQRRLEIA---------RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL 212 (250)
T ss_pred hhcchhhcCChhHhHHHHHH---------HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH
Confidence 33445567999999999999 9999999999999999999999999999999999874 5788889998754
Q ss_pred ccc
Q psy5649 237 WSD 239 (305)
Q Consensus 237 ~~~ 239 (305)
.-+
T Consensus 213 Vm~ 215 (250)
T COG0411 213 VMG 215 (250)
T ss_pred Hhh
Confidence 433
No 476
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.7e-12 Score=95.29 Aligned_cols=167 Identities=17% Similarity=0.083 Sum_probs=95.3
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+.+++.+.+.||||+|||||+|.||+.+.+..++|.....-..
T Consensus 22 ~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~---------------------------------- 67 (209)
T COG4133 22 SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ---------------------------------- 67 (209)
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc----------------------------------
Confidence 3567889999999999999999999999999988887743211000
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceE-EEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQE-IELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~-i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
..++.....+.++-.....+. .-+..+++.+.- +|... =...+++..+.+++.. +.+-....
T Consensus 68 ------~~~~~~~~~l~yLGH~~giK~------eLTa~ENL~F~~----~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~ 130 (209)
T COG4133 68 ------NVRESYHQALLYLGHQPGIKT------ELTALENLHFWQ----RFHGSGNAATIWEALAQVGLAG-LEDLPVGQ 130 (209)
T ss_pred ------cchhhHHHHHHHhhccccccc------hhhHHHHHHHHH----HHhCCCchhhHHHHHHHcCccc-ccccchhh
Confidence 000000111111111000000 001222221111 11000 0111223334444322 34444568
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (305)
+|.|+.+++|.+ +..+..+..+++|||....|.....-+...+..-..++--++..+|.
T Consensus 131 LSAGQqRRvAlA---------rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 131 LSAGQQRRVALA---------RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred cchhHHHHHHHH---------HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 999999999999 88999999999999999999888877776665443333333344553
No 477
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.18 E-value=2.7e-12 Score=119.40 Aligned_cols=62 Identities=23% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+|+++.+ +++++++..+++|||+++.|..+.+.+.+.+.+..+ +.+.++++|..
T Consensus 474 g~~LSgGq~Qrl~la---------Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~ 535 (576)
T TIGR02204 474 GVTLSGGQRQRIAIA---------RAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHRL 535 (576)
T ss_pred CCcCCHHHHHHHHHH---------HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 456999999999999 999999999999999999999999999999888754 46677788854
No 478
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=3.5e-13 Score=112.06 Aligned_cols=68 Identities=22% Similarity=0.154 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++.. ..+.++++|+..
T Consensus 141 ~~~~~~~~LS~Gq~qrv~la---------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~ 208 (252)
T PRK14255 141 HLHESALSLSGGQQQRVCIA---------RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH 208 (252)
T ss_pred HHhcCcccCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH
Confidence 45667789999999999999 999999999999999999999999999999998865 356777888643
No 479
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.17 E-value=3.1e-12 Score=128.64 Aligned_cols=63 Identities=21% Similarity=0.156 Sum_probs=55.5
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC-CchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK-PSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~ 234 (305)
+..||+||+||+|.+ ++++++|..+++||+++.+|..+.+.+.+++.... ..+.+.++++|..
T Consensus 1356 G~~LSGGQkQRIaIA---------RALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIA---------RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred CCcCCHHHHHHHHHH---------HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 457999999999999 99999999999999999999999999999999885 2456778888854
No 480
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=6.3e-13 Score=110.96 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=57.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.++....+|+|+.++++.+ ++++.++..+++|||+++.|..+...+.+.+..+.. .+.+.++++|+..
T Consensus 144 ~~~~~~~LSgGq~qrv~la---------ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 144 IHKSALDLSGGQQQRLCIA---------RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4556678999999999999 999999999999999999999999999999988743 3566777877643
No 481
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.17 E-value=1.3e-11 Score=116.93 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=49.4
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+||+|+++.+ +++++++..+++|||++..|..+.+.+.+ ... ..+.+.++++|+.
T Consensus 615 G~~LSGGQkQRlalA---------RALl~~p~ILILDEpTSaLD~~te~~i~~-~~~--~~~~TvIiItHrl 674 (711)
T TIGR00958 615 GSQLSGGQKQRIAIA---------RALVRKPRVLILDEATSALDAECEQLLQE-SRS--RASRTVLLIAHRL 674 (711)
T ss_pred CCcCCHHHHHHHHHH---------HHHhcCCCEEEEEccccccCHHHHHHHHH-hhc--cCCCeEEEEeccH
Confidence 457999999999999 99999999999999999999988877776 222 2345777788864
No 482
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.17 E-value=5.4e-13 Score=121.43 Aligned_cols=69 Identities=14% Similarity=0.037 Sum_probs=60.4
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.++.+.++|+|+.++++.+ ++++.++..+++|||+++.|..+.+.+.+.+..+...+.+.++++|+...
T Consensus 385 ~~~~~~~LSgGq~qrv~la---------~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 385 HRTQIGSLSGGNQQKVIIG---------RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred cccccccCCcHHHHHHHHH---------HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 3556778999999999999 99999999999999999999999999999998887667778888887543
No 483
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=2.2e-11 Score=93.71 Aligned_cols=60 Identities=25% Similarity=0.217 Sum_probs=51.8
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+|.|+.++++.+ ++++.++...++|||+.+.|..+...+.+.+.+....+.+.++++|..
T Consensus 81 lS~G~~~r~~l~---------~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 81 LSGGQRQRVALA---------RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred CCHHHHHHHHHH---------HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 999999999998 999999999999999999999999999999988755445666777753
No 484
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.17 E-value=2.6e-12 Score=119.17 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=55.7
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+..+|+|++|+++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+..+ +.+.++++|+.
T Consensus 467 ~~~~~LSgGq~qrl~lA---------Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 467 ERGNRLSGGERQRLAIA---------RAILKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFIIAHRL 530 (585)
T ss_pred CCCCCCCHHHHHHHHHH---------HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcCh
Confidence 44567999999999999 999999999999999999999999999999988754 56677788764
No 485
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.17 E-value=2.7e-12 Score=118.82 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=54.7
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|++|+++.+ +++++++..+++|||+++.|..+.+.+.+.+....+ +.+.++++|..
T Consensus 448 ~g~~LSgGq~qRi~lA---------Rall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tii~itH~~ 510 (569)
T PRK10789 448 RGVMLSGGQKQRISIA---------RALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE-GRTVIISAHRL 510 (569)
T ss_pred CCCcCCHHHHHHHHHH---------HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 3467999999999999 999999999999999999999999999999988753 45677777754
No 486
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.16 E-value=4.8e-13 Score=122.61 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=59.4
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+++.+.++|+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.++... +.+.++++|+..
T Consensus 421 ~~~~~~~LSgGq~qrv~la---------ral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 489 (520)
T TIGR03269 421 LDKYPDELSEGERHRVALA---------QVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD 489 (520)
T ss_pred hhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 4566788999999999999 9999999999999999999999999999999888644 667788888644
No 487
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=9.6e-13 Score=112.14 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=58.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++..+..+|+|+.++++.+ ++++.++..+++|||+.++|..+...+.+.+.++... .+.++++|...
T Consensus 193 ~~~~~~~~LSgGq~qrv~LA---------raL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~ 260 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIA---------RCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQ 260 (305)
T ss_pred HhcCccccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHH
Confidence 34566788999999999999 9999999999999999999999999999999988664 56677777543
No 488
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=3.6e-13 Score=106.19 Aligned_cols=175 Identities=15% Similarity=0.101 Sum_probs=110.8
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++++...|.||||+||||..|.|.+.+.+..+.+....- .....+ ...|=|+-|---|.+
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~------~~~~~~----------~~rIGyLPEERGLy~ 85 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGG------PLSQEI----------KNRIGYLPEERGLYP 85 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCc------chhhhh----------hhhcccChhhhccCc
Confidence 4667899999999999999999999999999887766643210 000000 001222222222222
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
+.. ...++. ++-. -.|....++....+...+|.++-. +..+...+|
T Consensus 86 k~t-------v~dql~-yla~-------------------------LkGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~L 131 (300)
T COG4152 86 KMT-------VEDQLK-YLAE-------------------------LKGMPKAEIQKKLQAWLERLEIVG-KKTKKIKEL 131 (300)
T ss_pred cCc-------HHHHHH-HHHH-------------------------hcCCcHHHHHHHHHHHHHhccccc-cccchHHHh
Confidence 111 111111 0000 011111222223334444444433 223344578
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 240 (305)
|.|..|.+-.. .+++.+|...++|||.+++|++..+-+.+++.+++..+.+.+..+|.+...+.+
T Consensus 132 SKGnqQKIQfi---------saviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeL 196 (300)
T COG4152 132 SKGNQQKIQFI---------SAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEEL 196 (300)
T ss_pred hhhhhHHHHHH---------HHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHH
Confidence 88999998877 899999999999999999999999999999999999999999999977655544
No 489
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.16 E-value=3.6e-13 Score=122.92 Aligned_cols=69 Identities=14% Similarity=0.105 Sum_probs=59.4
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
++.+..+|+|++++++.+ ++++.++..+++|||++++|....+.+.+.+..+...+.+.++++|+...+
T Consensus 398 ~~~~~~LSgGqkqrv~la---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~ 466 (500)
T TIGR02633 398 FLPIGRLSGGNQQKAVLA---------KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEV 466 (500)
T ss_pred cCccccCCHHHHHHHHHH---------HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHH
Confidence 344568999999999999 999999999999999999999999999999988866667788899875443
No 490
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.16 E-value=3.6e-13 Score=122.81 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=59.2
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
++.+..+|+|++++++.+ ++++.++..+++|||++++|..+.+.+.+.+.++...+.+.++++|+...
T Consensus 390 ~~~~~~LSgGekqrv~lA---------~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIA---------RGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred cCchhhCCHHHHHHHHHH---------HHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 445668999999999999 99999999999999999999999999999999986656677888886443
No 491
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.16 E-value=3e-12 Score=107.07 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 165 SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 165 ~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+|+|++++++.+ ++++.++..+++|||+++.|..+...+.+.+.+... +.+.++++|+.
T Consensus 138 ~LS~G~~qrl~La---------Rall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~-~~tii~isH~~ 197 (275)
T cd03289 138 VLSHGHKQLMCLA---------RSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA-DCTVILSEHRI 197 (275)
T ss_pred CCCHHHHHHHHHH---------HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEECCH
Confidence 3999999999999 999999999999999999999999999999987643 55667777754
No 492
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.15 E-value=8.1e-13 Score=134.05 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=107.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.|.||||+||||+++.|++.+.+..+.+...... ... .... +. ..|-++-+.+.+.+
T Consensus 1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~---i~~---~~~~----~r---~~IGy~pQ~~~L~~ 2025 (2272)
T TIGR01257 1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKS---ILT---NISD----VH---QNMGYCPQFDAIDD 2025 (2272)
T ss_pred EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE---Ccc---hHHH----Hh---hhEEEEeccccCCC
Confidence 36788999999999999999999999999998887776432110 000 0000 00 11223333233322
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
... ..+.+.. ...+. |....+++.......++.++. .+.++....+
T Consensus 2026 ~LT----v~E~L~l-~a~l~----------------------------g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~L 2071 (2272)
T TIGR01257 2026 LLT----GREHLYL-YARLR----------------------------GVPAEEIEKVANWSIQSLGLS-LYADRLAGTY 2071 (2272)
T ss_pred CCC----HHHHHHH-HHHhc----------------------------CCCHHHHHHHHHHHHHHcCCH-HHhcCChhhC
Confidence 110 0111110 00000 000000000000122333332 3566778899
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
|+|++++++.+ .+++.++..+++|||+++.|+...+.+.+.+.++...+.+.++.+|....
T Consensus 2072 SGGqKqRLslA---------~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257 2072 SGGNKRKLSTA---------IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred CHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999 99999999999999999999999999999999886666677888886543
No 493
>PRK04132 replication factor C small subunit; Provisional
Probab=99.14 E-value=2e-09 Score=101.46 Aligned_cols=152 Identities=13% Similarity=0.142 Sum_probs=111.8
Q ss_pred ceEEEEc--CCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhC------CCeEEEEcc
Q psy5649 14 NGILIYG--VNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDH------APSLLLLDN 80 (305)
Q Consensus 14 ~~vll~G--p~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~vl~ide 80 (305)
-+-+..| |++.||||+|+++|+++ +.+++++|+++..+ ...+++....+... ...|++|||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDE 638 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDE 638 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEEC
Confidence 3456678 99999999999999997 56899999987432 22455554443322 235999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 81 LDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 81 ~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
+|.+.. .....|...++.. ...+.+|.+||.+..+.+.+++ |+ ..+.++.|+..+....++..+.
T Consensus 639 aD~Lt~---------~AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 639 ADALTQ---------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred cccCCH---------HHHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 998742 1233455555532 3456788889999999999998 65 7889999999999988887777
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhH
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDL 186 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di 186 (305)
+....++.+.+..++..++|-...-|
T Consensus 704 ~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 704 NEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred hcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 77777888889999988777554444
No 494
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.3e-12 Score=100.91 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=57.5
Q ss_pred HHhcC-CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKV-PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~-~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
++++. ...+|+|+.++.-.. ..++.+|...++|||++++|....+.+.+.++.++..+...++++|...
T Consensus 136 ~l~R~vN~GFSGGEkKR~Eil---------Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 136 FLERYVNEGFSGGEKKRNEIL---------QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HhhcccCCCcCcchHHHHHHH---------HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 44443 446888898888777 8888899999999999999999999999999999988888888888543
No 495
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4e-09 Score=97.52 Aligned_cols=159 Identities=12% Similarity=0.194 Sum_probs=109.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC-------------------------eEEEEecccccccccchHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV-------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDA 67 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~-------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 67 (305)
+..+||+||+|+||||+++.+|..+.+ ++..+++.+ ......++.+.+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~ 112 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQ 112 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHH
Confidence 445899999999999999999998753 223332221 1124456666665
Q ss_pred HHhC----CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEc
Q psy5649 68 ALDH----APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIEL 143 (305)
Q Consensus 68 ~~~~----~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~ 143 (305)
+... ..-|++|||+|.+.. .....|+..++.. ....++|.+|+....+-+.+++ |. ..+++
T Consensus 113 ~~~~P~~~~~KVvIIdea~~Ls~---------~a~naLLK~LEep---p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f 177 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDEVHMLSQ---------AAFNAFLKTLEEP---PSYAIFILATTEKHKILPTILS--RC-QIFDF 177 (614)
T ss_pred HhhCcccCCcEEEEEECcccCCH---------HHHHHHHHHHhCC---CCCeEEEEEeCCchhchHHHHh--hh-heeec
Confidence 5432 234999999998731 2344566666653 2345566677777888888888 55 56899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
..++..+....+...+.+.+...+.+.++.++..+.| +.+++...+...
T Consensus 178 ~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 178 NRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQV 226 (614)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999999998888888888888888889999877654 555555554443
No 496
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=8.7e-12 Score=93.42 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=111.6
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
+|.+.+++...++|.+|+|||||+++|+..+.+..+.+....-.+.. .+++.. -|
T Consensus 26 sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~--------~dl~~m-----------sE------ 80 (258)
T COG4107 26 SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP--------RDLYTM-----------SE------ 80 (258)
T ss_pred ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc--------hhHhhh-----------ch------
Confidence 57789999999999999999999999999998877666432111100 000000 00
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCC-CcceEEEccCCCHHHHHHHHHHHHhcCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPG-RLDQEIELPVPSRDQRAAILHCLLTKVPHS 165 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~-r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ 165 (305)
...+..+..--.++.+.+...-..-+-+. .++.+.+..-| |---.|....-+..++++|-....+..|..
T Consensus 81 -----aeRR~L~RTeWG~VhQnP~DGLRm~VSAG----~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~Prt 151 (258)
T COG4107 81 -----AERRRLLRTEWGFVHQNPRDGLRMQVSAG----GNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT 151 (258)
T ss_pred -----HHHHHHhhhccceeecCccccceeeeccC----CccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccc
Confidence 01111111111222222211111112222 22322222211 111223334456667777766667788999
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVP 233 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~ 233 (305)
+|++..|++.++ ++++..+....+|||+.++|..-...+.+.++.+... +...++++|+
T Consensus 152 FSGGMqQRLQiA---------RnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHD 211 (258)
T COG4107 152 FSGGMQQRLQIA---------RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred cchHHHHHHHHH---------HHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEech
Confidence 999999999999 9999999988899999999988888888777766433 5566677775
No 497
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.14 E-value=1.4e-12 Score=122.14 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=58.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..+..+..+|+++.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+++++..+.+.++++|..
T Consensus 137 ~~~~~~~~LS~Gq~qrv~LA---------raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 137 RVEYQPSQLSGGQQQRVSIA---------RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 45667789999999999999 999999999999999999999999999999988765556667777643
No 498
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.14 E-value=2.1e-11 Score=112.57 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=52.0
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhh-hcCCchhhhhhccCCC
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALD-HVKPSAMRQVLVEVPN 234 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~ 234 (305)
..+|+|++|+++.+ +++++++..+++|||++..|..+.+.+.+.+. ..+..+.+.++++|+.
T Consensus 469 ~~LSgGq~qRlala---------Rall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 469 TALSTGQQKRLALI---------CAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred ccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH
Confidence 46999999999999 99999999999999999999999999887653 3433456777888864
No 499
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.7e-12 Score=107.48 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=57.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+++....+|+|+.++++.+ ++++.++..+++|||+.+.|..+.+.+.+.+.++.. ..+.++++|+.
T Consensus 154 ~~~~~~~~LS~G~~qrv~la---------ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~ 220 (265)
T PRK14252 154 RLGDLAFNLSGGQQQRLCIA---------RALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM 220 (265)
T ss_pred HHhCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH
Confidence 34566778999999999999 999999999999999999999999999999998865 45667777754
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.14 E-value=3.5e-10 Score=85.14 Aligned_cols=110 Identities=21% Similarity=0.288 Sum_probs=66.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc------cccch---HHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS------KFYGE---AEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~------~~~~~---~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
+|+|+||+|||||++++.+|..++.++..++++.... .+... .+-.-..+. .+ ...+++++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~-~a-~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLV-RA-MRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCC-TT-HHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccc-cc-ccceeEEEECCcccCC
Confidence 5899999999999999999999999999998765421 11100 000000000 00 0157899999998641
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhccc----------CC------eEEEEEEecCCC----CCCccccCCCCc
Q psy5649 86 TGRNRSDQERRLLSCLVTQVDRLHEL----------QA------CVVLLAVTTSLD----NVDVSLRTPGRL 137 (305)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~------~~~~i~~t~~~~----~l~~~l~~~~r~ 137 (305)
......+...++.-.-. .. .+.+|+|+|..+ .+++++.+ ||
T Consensus 79 ---------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ---------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 23444444444422111 11 378999999988 78888887 65
Done!