Query psy5649
Match_columns 305
No_of_seqs 241 out of 2423
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 23:06:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 5.1E-60 1.8E-64 440.0 26.3 300 3-304 228-543 (806)
2 1ypw_A Transitional endoplasmi 100.0 2E-43 6.9E-48 334.2 25.3 300 3-304 228-543 (806)
3 4b4t_J 26S protease regulatory 100.0 3.9E-42 1.3E-46 295.8 26.4 216 3-223 172-392 (405)
4 4b4t_I 26S protease regulatory 100.0 2.1E-41 7.3E-46 291.8 24.6 216 3-223 206-426 (437)
5 4b4t_M 26S protease regulatory 100.0 3.7E-41 1.3E-45 294.2 25.0 218 3-225 205-427 (434)
6 4b4t_L 26S protease subunit RP 100.0 7E-41 2.4E-45 292.7 24.5 216 3-223 205-425 (437)
7 4b4t_H 26S protease regulatory 100.0 2.1E-40 7.1E-45 288.4 25.4 214 3-221 233-451 (467)
8 4b4t_K 26S protease regulatory 100.0 7.9E-40 2.7E-44 285.7 26.3 214 3-221 196-415 (428)
9 3cf2_A TER ATPase, transitiona 100.0 1.8E-37 6.2E-42 288.9 9.5 197 3-201 501-702 (806)
10 3hu3_A Transitional endoplasmi 100.0 2.1E-34 7.3E-39 257.7 23.8 241 3-245 228-484 (489)
11 2x8a_A Nuclear valosin-contain 100.0 3.1E-32 1.1E-36 227.3 22.4 222 3-225 34-269 (274)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.2E-31 4E-36 229.2 25.0 189 10-200 42-233 (322)
13 3eie_A Vacuolar protein sortin 100.0 2.7E-31 9.1E-36 227.5 22.8 214 9-224 47-302 (322)
14 3cf0_A Transitional endoplasmi 100.0 1.2E-31 4.2E-36 227.4 19.1 219 3-223 39-284 (301)
15 2qp9_X Vacuolar protein sortin 100.0 5.8E-31 2E-35 227.9 23.4 190 9-200 80-271 (355)
16 2ce7_A Cell division protein F 100.0 6.5E-30 2.2E-34 226.9 25.8 214 4-222 40-258 (476)
17 3h4m_A Proteasome-activating n 100.0 1.1E-29 3.7E-34 214.2 23.7 216 3-223 41-261 (285)
18 1lv7_A FTSH; alpha/beta domain 100.0 3.8E-29 1.3E-33 207.7 24.9 212 5-221 37-253 (257)
19 2zan_A Vacuolar protein sortin 100.0 8.7E-30 3E-34 226.7 19.3 189 10-200 164-355 (444)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.5E-29 1.5E-33 207.8 20.2 214 5-222 31-251 (262)
21 2dhr_A FTSH; AAA+ protein, hex 100.0 8.1E-29 2.8E-33 221.1 20.2 215 4-223 55-274 (499)
22 1ixz_A ATP-dependent metallopr 100.0 7.5E-28 2.6E-32 199.5 23.8 209 4-217 40-253 (254)
23 3d8b_A Fidgetin-like protein 1 100.0 7.4E-28 2.5E-32 208.8 24.1 211 11-223 115-337 (357)
24 1r6b_X CLPA protein; AAA+, N-t 100.0 2.4E-28 8.1E-33 231.9 22.1 287 3-305 197-521 (758)
25 3b9p_A CG5977-PA, isoform A; A 100.0 5.6E-28 1.9E-32 204.9 21.7 212 11-224 52-276 (297)
26 1iy2_A ATP-dependent metallopr 100.0 6.5E-27 2.2E-31 196.3 23.9 209 4-217 64-277 (278)
27 3vfd_A Spastin; ATPase, microt 100.0 4.2E-27 1.4E-31 206.6 23.7 211 11-223 146-368 (389)
28 3pxi_A Negative regulator of g 99.9 5.9E-27 2E-31 222.0 17.5 171 3-197 191-385 (758)
29 2r62_A Cell division protease 99.9 1.6E-29 5.3E-34 211.3 -0.4 219 4-226 35-259 (268)
30 1qvr_A CLPB protein; coiled co 99.9 3.9E-26 1.3E-30 218.6 19.9 181 6-195 184-390 (854)
31 1ypw_A Transitional endoplasmi 99.9 3.5E-29 1.2E-33 237.0 -4.5 194 5-200 503-701 (806)
32 3t15_A Ribulose bisphosphate c 99.9 3.6E-26 1.2E-30 192.8 11.1 174 8-188 31-222 (293)
33 4b4t_J 26S protease regulatory 99.9 2.1E-22 7.3E-27 173.4 7.5 83 222-304 132-214 (405)
34 3syl_A Protein CBBX; photosynt 99.8 3.6E-20 1.2E-24 157.7 17.5 179 12-198 66-263 (309)
35 4b4t_L 26S protease subunit RP 99.8 3.5E-21 1.2E-25 168.4 7.3 76 229-304 172-247 (437)
36 1d2n_A N-ethylmaleimide-sensit 99.8 1.6E-19 5.6E-24 150.8 17.1 203 5-222 56-266 (272)
37 4b4t_I 26S protease regulatory 99.8 4.1E-21 1.4E-25 165.9 7.1 75 230-304 174-248 (437)
38 2c9o_A RUVB-like 1; hexameric 99.8 2.4E-22 8.1E-27 179.7 -1.5 174 8-192 58-262 (456)
39 4b4t_M 26S protease regulatory 99.8 6.1E-21 2.1E-25 166.8 7.1 75 230-304 173-247 (434)
40 4b4t_H 26S protease regulatory 99.8 6.8E-21 2.3E-25 166.0 7.3 75 230-304 201-275 (467)
41 4b4t_K 26S protease regulatory 99.8 1.6E-20 5.3E-25 164.1 7.6 75 230-304 164-238 (428)
42 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-17 3.7E-22 145.8 19.2 196 9-222 66-332 (368)
43 3m6a_A ATP-dependent protease 99.8 1.4E-18 4.9E-23 158.0 11.2 199 12-220 107-341 (543)
44 4akg_A Glutathione S-transfera 99.8 4.5E-17 1.5E-21 168.1 22.7 283 11-305 1265-1642(2695)
45 1ofh_A ATP-dependent HSL prote 99.8 5E-17 1.7E-21 138.1 18.8 208 12-221 49-300 (310)
46 3pfi_A Holliday junction ATP-d 99.7 3.2E-16 1.1E-20 134.9 21.5 187 11-220 53-254 (338)
47 2z4s_A Chromosomal replication 99.7 6.4E-17 2.2E-21 143.6 15.6 194 13-221 130-333 (440)
48 1l8q_A Chromosomal replication 99.7 1.9E-16 6.4E-21 135.6 16.4 171 12-196 36-214 (324)
49 3bos_A Putative DNA replicatio 99.7 3.4E-16 1.2E-20 128.0 17.0 183 12-218 51-241 (242)
50 3cmw_A Protein RECA, recombina 99.7 1.6E-18 5.5E-23 172.0 3.2 72 232-303 1014-1118(1706)
51 3pxg_A Negative regulator of g 99.7 3.4E-17 1.2E-21 146.6 10.9 192 4-221 192-407 (468)
52 1hqc_A RUVB; extended AAA-ATPa 99.7 1.3E-15 4.3E-20 130.4 19.7 187 12-220 37-238 (324)
53 3hws_A ATP-dependent CLP prote 99.7 1.9E-16 6.4E-21 137.6 14.2 187 12-200 50-325 (363)
54 2x8a_A Nuclear valosin-contain 99.7 1.6E-17 5.5E-22 138.3 6.9 74 231-304 3-76 (274)
55 3j16_B RLI1P; ribosome recycli 99.7 1.3E-19 4.4E-24 165.7 -6.4 69 158-235 214-282 (608)
56 2chg_A Replication factor C sm 99.7 2.6E-15 8.9E-20 121.1 19.6 177 12-218 37-224 (226)
57 3ux8_A Excinuclease ABC, A sub 99.7 5.4E-19 1.8E-23 165.1 -3.1 66 160-234 197-264 (670)
58 2v1u_A Cell division control p 99.7 1.4E-15 4.7E-20 133.1 18.9 199 11-220 42-276 (387)
59 1jbk_A CLPB protein; beta barr 99.7 3.9E-17 1.3E-21 128.8 8.0 144 3-155 33-194 (195)
60 3pvs_A Replication-associated 99.7 1.1E-15 3.8E-20 135.5 17.7 181 14-220 51-244 (447)
61 3te6_A Regulatory protein SIR3 99.7 2.6E-15 9E-20 126.4 15.2 143 6-161 38-213 (318)
62 4fcw_A Chaperone protein CLPB; 99.7 4.2E-15 1.4E-19 126.4 16.6 171 13-197 47-278 (311)
63 3cf0_A Transitional endoplasmi 99.6 1.6E-16 5.5E-21 134.4 7.2 79 226-304 3-81 (301)
64 1g41_A Heat shock protein HSLU 99.6 6.4E-17 2.2E-21 141.7 4.8 136 12-155 49-188 (444)
65 1njg_A DNA polymerase III subu 99.6 6.9E-15 2.4E-19 120.2 16.6 175 14-217 46-248 (250)
66 2qby_B CDC6 homolog 3, cell di 99.6 1.2E-14 4E-19 127.2 18.9 191 11-220 43-270 (384)
67 2p65_A Hypothetical protein PF 99.6 3E-16 1E-20 123.1 7.9 136 4-147 34-187 (187)
68 3ozx_A RNAse L inhibitor; ATP 99.6 6.9E-18 2.4E-22 152.6 -2.0 68 158-235 131-198 (538)
69 1in4_A RUVB, holliday junction 99.6 4.6E-14 1.6E-18 121.0 21.7 186 13-221 51-251 (334)
70 1sxj_A Activator 1 95 kDa subu 99.6 2.5E-15 8.7E-20 136.2 13.7 165 12-193 76-252 (516)
71 2qby_A CDC6 homolog 1, cell di 99.6 2.4E-14 8.1E-19 125.2 18.8 197 11-220 43-272 (386)
72 1fnn_A CDC6P, cell division co 99.6 1.1E-13 3.7E-18 121.3 22.4 194 15-222 46-276 (389)
73 4akg_A Glutathione S-transfera 99.6 3.6E-14 1.2E-18 146.8 21.8 258 12-296 644-947 (2695)
74 3gfo_A Cobalt import ATP-bindi 99.6 8.4E-19 2.9E-23 145.4 -10.2 74 158-240 136-210 (275)
75 3bk7_A ABC transporter ATP-bin 99.6 1.4E-17 4.9E-22 152.5 -3.2 69 158-235 221-289 (607)
76 1yqt_A RNAse L inhibitor; ATP- 99.6 1.9E-17 6.4E-22 150.2 -3.3 69 158-235 151-219 (538)
77 1xwi_A SKD1 protein; VPS4B, AA 99.6 7.7E-16 2.6E-20 131.3 5.8 75 229-304 3-78 (322)
78 2iw3_A Elongation factor 3A; a 99.6 2.7E-17 9.3E-22 156.0 -3.8 66 158-235 541-606 (986)
79 3u61_B DNA polymerase accessor 99.6 4.4E-14 1.5E-18 120.8 16.3 152 12-184 47-211 (324)
80 2r44_A Uncharacterized protein 99.6 1.8E-13 6.2E-18 117.3 20.0 189 13-220 46-297 (331)
81 1sxj_D Activator 1 41 kDa subu 99.6 9.3E-14 3.2E-18 120.1 18.3 186 14-220 59-263 (353)
82 3tui_C Methionine import ATP-b 99.6 8.2E-19 2.8E-23 149.9 -13.7 69 158-235 156-225 (366)
83 3fvq_A Fe(3+) IONS import ATP- 99.6 1.8E-18 6.2E-23 147.7 -11.6 69 158-235 131-200 (359)
84 3rlf_A Maltose/maltodextrin im 99.6 1.9E-18 6.6E-23 148.6 -11.6 69 158-235 126-195 (381)
85 1um8_A ATP-dependent CLP prote 99.6 7.8E-14 2.7E-18 121.7 16.5 185 12-199 71-341 (376)
86 3tif_A Uncharacterized ABC tra 99.6 2.6E-18 8.9E-23 139.7 -11.2 66 160-234 140-206 (235)
87 3pxi_A Negative regulator of g 99.6 7.2E-14 2.5E-18 132.5 16.6 168 15-197 523-724 (758)
88 2chq_A Replication factor C sm 99.6 1.2E-13 4E-18 117.7 16.2 150 14-180 39-195 (319)
89 3eie_A Vacuolar protein sortin 99.5 3.3E-15 1.1E-19 127.6 5.5 78 226-304 6-83 (322)
90 1g6h_A High-affinity branched- 99.5 1.3E-17 4.3E-22 137.6 -9.8 72 159-239 147-218 (257)
91 2olj_A Amino acid ABC transpor 99.5 8.1E-18 2.8E-22 138.7 -11.3 67 159-234 153-219 (263)
92 1r6b_X CLPA protein; AAA+, N-t 99.5 1.9E-13 6.3E-18 129.8 16.9 170 14-196 489-714 (758)
93 1v43_A Sugar-binding transport 99.5 8.2E-18 2.8E-22 144.8 -12.2 69 158-235 134-203 (372)
94 1jr3_A DNA polymerase III subu 99.5 6.1E-13 2.1E-17 115.8 18.5 160 13-194 38-225 (373)
95 2yyz_A Sugar ABC transporter, 99.5 7.9E-18 2.7E-22 144.2 -12.4 69 158-235 126-195 (359)
96 2qp9_X Vacuolar protein sortin 99.5 5.6E-15 1.9E-19 127.7 5.1 77 227-304 40-116 (355)
97 1oxx_K GLCV, glucose, ABC tran 99.5 5.7E-18 1.9E-22 145.2 -13.9 69 158-235 133-202 (353)
98 1z47_A CYSA, putative ABC-tran 99.5 7.5E-18 2.6E-22 144.0 -13.2 69 158-235 138-207 (355)
99 1iqp_A RFCS; clamp loader, ext 99.5 6.4E-13 2.2E-17 113.5 17.4 160 15-192 48-214 (327)
100 1sxj_B Activator 1 37 kDa subu 99.5 3.1E-13 1E-17 115.3 15.1 148 15-183 44-203 (323)
101 2it1_A 362AA long hypothetical 99.5 8.9E-18 3.1E-22 144.1 -13.7 69 158-235 126-195 (362)
102 1g8p_A Magnesium-chelatase 38 99.5 5.6E-13 1.9E-17 115.1 16.2 196 12-221 44-323 (350)
103 2pcj_A ABC transporter, lipopr 99.5 1.1E-17 3.8E-22 135.0 -12.8 67 159-234 134-200 (224)
104 1b0u_A Histidine permease; ABC 99.5 7.6E-17 2.6E-21 133.1 -8.9 67 159-234 147-213 (262)
105 1sxj_E Activator 1 40 kDa subu 99.5 6.3E-13 2.2E-17 115.0 15.3 160 14-193 37-240 (354)
106 2yz2_A Putative ABC transporte 99.5 3.9E-17 1.3E-21 135.3 -10.8 74 157-239 130-203 (266)
107 3h4m_A Proteasome-activating n 99.5 4.3E-14 1.5E-18 118.6 7.5 75 230-304 9-83 (285)
108 1vpl_A ABC transporter, ATP-bi 99.5 1.1E-17 3.7E-22 137.5 -14.1 68 159-235 140-207 (256)
109 1g29_1 MALK, maltose transport 99.5 6.1E-17 2.1E-21 139.6 -10.3 69 158-235 132-201 (372)
110 4g1u_C Hemin import ATP-bindin 99.5 3.2E-17 1.1E-21 135.5 -12.0 68 159-235 135-209 (266)
111 3d31_A Sulfate/molybdate ABC t 99.5 3.6E-17 1.2E-21 139.7 -12.4 69 158-235 120-189 (348)
112 2qi9_C Vitamin B12 import ATP- 99.5 2.4E-16 8.2E-21 128.9 -7.7 68 159-235 120-194 (249)
113 2zan_A Vacuolar protein sortin 99.5 3.4E-14 1.1E-18 126.3 5.2 77 227-304 123-200 (444)
114 1sgw_A Putative ABC transporte 99.5 1.3E-16 4.6E-21 127.3 -9.3 72 160-240 128-199 (214)
115 2qz4_A Paraplegin; AAA+, SPG7, 99.4 8.2E-14 2.8E-18 115.4 6.2 71 233-304 1-71 (262)
116 1lv7_A FTSH; alpha/beta domain 99.4 7E-14 2.4E-18 115.5 5.5 73 231-304 5-77 (257)
117 2ihy_A ABC transporter, ATP-bi 99.4 1.6E-16 5.4E-21 132.2 -10.6 71 159-238 155-227 (279)
118 1sxj_C Activator 1 40 kDa subu 99.4 1.9E-12 6.6E-17 111.3 14.4 145 15-180 48-203 (340)
119 2d2e_A SUFC protein; ABC-ATPas 99.4 2.7E-16 9.1E-21 129.1 -9.4 71 158-237 135-206 (250)
120 1qvr_A CLPB protein; coiled co 99.4 1.4E-12 5E-17 125.0 14.9 172 14-198 589-820 (854)
121 1ji0_A ABC transporter; ATP bi 99.4 1.8E-16 6.1E-21 129.3 -10.6 68 158-234 132-199 (240)
122 1ixz_A ATP-dependent metallopr 99.4 2.7E-13 9.4E-18 111.8 8.0 76 228-304 6-81 (254)
123 3b9p_A CG5977-PA, isoform A; A 99.4 1.2E-13 4.2E-18 116.5 5.9 75 229-304 12-86 (297)
124 2onk_A Molybdate/tungstate ABC 99.4 6.6E-16 2.2E-20 125.7 -8.0 68 159-235 120-188 (240)
125 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.4E-12 4.9E-17 116.6 12.7 134 12-157 40-194 (500)
126 2ce7_A Cell division protein F 99.4 2.4E-13 8.2E-18 120.8 7.6 72 232-304 10-81 (476)
127 3nh6_A ATP-binding cassette SU 99.4 1.8E-15 6.1E-20 127.0 -5.7 62 163-234 188-249 (306)
128 3vkg_A Dynein heavy chain, cyt 99.4 2.5E-11 8.5E-16 126.7 23.1 282 11-305 1302-1679(3245)
129 2ff7_A Alpha-hemolysin translo 99.4 1.9E-15 6.6E-20 123.6 -5.7 63 163-235 143-205 (247)
130 3hu3_A Transitional endoplasmi 99.4 2.6E-13 8.9E-18 121.5 7.3 72 233-304 199-270 (489)
131 2ixe_A Antigen peptide transpo 99.4 1.2E-15 4.1E-20 126.5 -7.8 65 161-234 152-217 (271)
132 2r62_A Cell division protease 99.4 1.1E-13 3.8E-18 115.0 3.9 73 231-304 4-76 (268)
133 3d8b_A Fidgetin-like protein 1 99.4 2.5E-13 8.5E-18 117.5 5.4 74 230-304 76-149 (357)
134 2nq2_C Hypothetical ABC transp 99.4 4.1E-15 1.4E-19 122.1 -5.7 68 159-235 122-190 (253)
135 2bjv_A PSP operon transcriptio 99.4 8.3E-12 2.8E-16 103.5 14.0 171 11-195 27-238 (265)
136 3gd7_A Fusion complex of cysti 99.4 4.8E-15 1.7E-19 128.4 -6.0 69 157-235 136-215 (390)
137 3vkg_A Dynein heavy chain, cyt 99.4 1.4E-10 4.9E-15 121.2 25.2 127 13-155 604-749 (3245)
138 1a5t_A Delta prime, HOLB; zinc 99.4 3.9E-11 1.3E-15 102.8 17.4 147 13-182 24-198 (334)
139 2zu0_C Probable ATP-dependent 99.4 4.8E-14 1.6E-18 116.7 -0.8 67 161-236 159-226 (267)
140 2ghi_A Transport protein; mult 99.3 9.9E-15 3.4E-19 120.3 -5.3 64 162-235 152-215 (260)
141 2pjz_A Hypothetical protein ST 99.3 2.9E-14 9.9E-19 117.5 -2.5 68 158-237 121-188 (263)
142 2dhr_A FTSH; AAA+ protein, hex 99.3 9.1E-13 3.1E-17 117.8 6.6 71 233-304 26-96 (499)
143 1w5s_A Origin recognition comp 99.3 6.7E-11 2.3E-15 104.2 18.4 199 12-219 49-292 (412)
144 1mv5_A LMRA, multidrug resista 99.3 3.8E-13 1.3E-17 109.9 3.5 62 163-234 137-198 (243)
145 3vfd_A Spastin; ATPase, microt 99.3 9.7E-13 3.3E-17 115.2 5.9 78 226-304 103-180 (389)
146 2cbz_A Multidrug resistance-as 99.3 2.5E-13 8.6E-18 110.4 1.9 67 160-236 122-191 (237)
147 3b5x_A Lipid A export ATP-bind 99.3 8.1E-14 2.8E-18 128.1 -1.5 63 162-234 477-539 (582)
148 1iy2_A ATP-dependent metallopr 99.3 3.1E-12 1.1E-16 106.8 8.1 73 231-304 33-105 (278)
149 1ojl_A Transcriptional regulat 99.3 1.3E-11 4.4E-16 104.2 11.3 170 11-195 23-233 (304)
150 3f9v_A Minichromosome maintena 99.3 3.6E-12 1.2E-16 116.9 8.1 132 15-161 329-492 (595)
151 2pze_A Cystic fibrosis transme 99.3 1.6E-13 5.4E-18 111.0 -1.0 61 163-233 128-189 (229)
152 3b60_A Lipid A export ATP-bind 99.3 5.3E-13 1.8E-17 122.7 -0.1 63 163-235 478-540 (582)
153 4a82_A Cystic fibrosis transme 99.2 1.3E-13 4.5E-18 126.5 -5.2 62 164-235 476-537 (578)
154 2yl4_A ATP-binding cassette SU 99.2 1.1E-13 3.7E-18 127.5 -5.8 62 163-234 481-542 (595)
155 3cmu_A Protein RECA, recombina 99.2 1.3E-10 4.4E-15 117.4 15.5 79 8-86 1076-1173(2050)
156 3qf4_A ABC transporter, ATP-bi 99.2 6.1E-14 2.1E-18 128.8 -7.8 63 162-234 476-538 (587)
157 3qf4_B Uncharacterized ABC tra 99.2 5.5E-13 1.9E-17 122.8 -1.5 62 164-235 490-551 (598)
158 3n70_A Transport activator; si 99.2 3.4E-11 1.1E-15 90.3 8.6 91 11-123 22-115 (145)
159 3ec2_A DNA replication protein 99.2 1.3E-11 4.5E-16 96.1 5.5 79 3-83 28-111 (180)
160 2kjq_A DNAA-related protein; s 99.2 6.4E-11 2.2E-15 89.1 8.7 58 12-84 35-95 (149)
161 2bbs_A Cystic fibrosis transme 99.2 9.6E-12 3.3E-16 103.8 4.4 62 163-234 157-219 (290)
162 3cmu_A Protein RECA, recombina 99.2 1.3E-09 4.5E-14 110.2 20.3 78 9-86 379-475 (2050)
163 3co5_A Putative two-component 99.1 3.6E-11 1.2E-15 89.9 5.1 92 11-124 25-116 (143)
164 2gno_A DNA polymerase III, gam 99.1 4.8E-10 1.6E-14 94.4 12.5 125 13-159 18-152 (305)
165 3k1j_A LON protease, ATP-depen 99.1 2.5E-10 8.4E-15 105.4 11.6 133 72-218 201-373 (604)
166 3ozx_A RNAse L inhibitor; ATP 99.1 2E-13 6.8E-18 123.6 -9.2 69 158-235 378-447 (538)
167 1g41_A Heat shock protein HSLU 99.1 3.3E-11 1.1E-15 105.6 4.7 67 238-304 15-82 (444)
168 2c9o_A RUVB-like 1; hexameric 99.1 7.8E-11 2.7E-15 105.2 7.0 64 233-304 32-97 (456)
169 4f4c_A Multidrug resistance pr 99.1 6.8E-13 2.3E-17 132.0 -7.0 65 163-237 1215-1279(1321)
170 3g5u_A MCG1178, multidrug resi 99.1 2.4E-12 8E-17 127.9 -4.2 64 164-237 1170-1233(1284)
171 2vhj_A Ntpase P4, P4; non- hyd 99.1 2.2E-10 7.5E-15 95.7 7.3 79 8-88 118-198 (331)
172 3g5u_A MCG1178, multidrug resi 99.0 4E-12 1.4E-16 126.2 -5.2 61 163-233 524-584 (1284)
173 3cmw_A Protein RECA, recombina 99.0 8.4E-10 2.9E-14 110.4 11.0 118 10-128 1079-1223(1706)
174 4f4c_A Multidrug resistance pr 99.0 3.2E-11 1.1E-15 120.1 0.6 162 7-236 438-615 (1321)
175 2qen_A Walker-type ATPase; unk 99.0 2.7E-08 9.2E-13 85.4 19.0 165 14-189 32-245 (350)
176 3kw6_A 26S protease regulatory 99.0 1.1E-09 3.7E-14 72.5 7.4 75 144-222 1-75 (78)
177 3t15_A Ribulose bisphosphate c 99.0 3E-10 1E-14 95.4 4.5 38 267-304 31-68 (293)
178 2krk_A 26S protease regulatory 99.0 1.2E-09 4.2E-14 73.4 6.3 77 143-223 8-84 (86)
179 3bk7_A ABC transporter ATP-bin 99.0 8.7E-12 3E-16 114.3 -5.8 69 158-235 464-533 (607)
180 2fna_A Conserved hypothetical 98.9 3.6E-08 1.2E-12 84.8 16.1 159 14-183 31-244 (357)
181 3j16_B RLI1P; ribosome recycli 98.9 6.8E-11 2.3E-15 108.3 -1.7 69 158-235 460-529 (608)
182 1yqt_A RNAse L inhibitor; ATP- 98.9 2.5E-11 8.6E-16 110.1 -4.7 68 159-235 395-463 (538)
183 3syl_A Protein CBBX; photosynt 98.9 1E-09 3.6E-14 92.8 4.9 67 237-304 30-106 (309)
184 1sxj_A Activator 1 95 kDa subu 98.8 1.7E-09 5.9E-14 97.9 4.9 73 232-304 33-109 (516)
185 4gp7_A Metallophosphoesterase; 98.8 3.8E-10 1.3E-14 87.0 -0.3 60 167-235 85-160 (171)
186 3vlf_B 26S protease regulatory 98.8 1.8E-08 6E-13 68.1 7.2 73 147-223 2-74 (88)
187 3hws_A ATP-dependent CLP prote 98.8 3.4E-09 1.1E-13 91.8 4.6 65 240-304 17-83 (363)
188 2w58_A DNAI, primosome compone 98.8 8.8E-09 3E-13 81.5 6.5 70 14-85 55-128 (202)
189 3pfi_A Holliday junction ATP-d 98.8 1.3E-08 4.4E-13 87.2 8.0 64 233-304 24-87 (338)
190 1um8_A ATP-dependent CLP prote 98.8 7.4E-09 2.5E-13 90.1 6.1 65 239-304 22-104 (376)
191 2iw3_A Elongation factor 3A; a 98.8 4.5E-10 1.5E-14 107.1 -1.9 66 159-236 895-960 (986)
192 2r2a_A Uncharacterized protein 98.8 4.2E-09 1.4E-13 82.8 4.0 126 14-147 6-154 (199)
193 3aji_B S6C, proteasome (prosom 98.8 2.2E-08 7.5E-13 67.0 6.8 74 147-224 2-75 (83)
194 1ye8_A Protein THEP1, hypothet 98.7 1E-07 3.5E-12 73.7 11.3 27 15-41 2-28 (178)
195 1tue_A Replication protein E1; 98.7 2.9E-08 9.9E-13 77.3 7.8 33 9-41 54-86 (212)
196 1ofh_A ATP-dependent HSL prote 98.7 4.4E-09 1.5E-13 88.9 3.4 65 238-304 15-82 (310)
197 3uk6_A RUVB-like 2; hexameric 98.7 1.7E-08 5.8E-13 87.5 6.8 64 233-304 39-104 (368)
198 3ux8_A Excinuclease ABC, A sub 98.7 1.3E-09 4.3E-14 101.9 -1.1 66 160-234 538-606 (670)
199 2cvh_A DNA repair and recombin 98.7 1.3E-07 4.5E-12 75.6 10.8 40 9-48 16-55 (220)
200 2ehv_A Hypothetical protein PH 98.7 1E-07 3.5E-12 77.8 10.0 26 9-34 26-51 (251)
201 1svm_A Large T antigen; AAA+ f 98.7 9.1E-09 3.1E-13 88.8 3.5 118 8-144 164-283 (377)
202 1d2n_A N-ethylmaleimide-sensit 98.7 1.4E-08 4.9E-13 84.2 4.4 41 264-304 56-96 (272)
203 3u61_B DNA polymerase accessor 98.6 5.5E-08 1.9E-12 82.8 7.5 61 232-304 20-80 (324)
204 1n0w_A DNA repair protein RAD5 98.6 2.5E-07 8.6E-12 75.1 11.2 79 9-87 20-134 (243)
205 3m6a_A ATP-dependent protease 98.6 3.4E-08 1.2E-12 89.8 6.4 63 235-305 78-141 (543)
206 2qgz_A Helicase loader, putati 98.6 3E-08 1E-12 83.7 5.5 71 12-84 151-226 (308)
207 1hqc_A RUVB; extended AAA-ATPa 98.6 5.1E-08 1.8E-12 82.9 6.7 64 233-304 7-70 (324)
208 4a74_A DNA repair and recombin 98.6 2.1E-07 7.1E-12 75.0 9.6 30 9-38 21-50 (231)
209 2npi_A Protein CLP1; CLP1-PCF1 98.6 1.1E-09 3.7E-14 97.2 -4.8 48 163-220 233-287 (460)
210 1jbk_A CLPB protein; beta barr 98.6 1.1E-07 3.7E-12 74.1 7.1 58 234-304 18-85 (195)
211 2eyu_A Twitching motility prot 98.6 2.5E-08 8.7E-13 81.9 3.5 80 3-82 15-108 (261)
212 3ec2_A DNA replication protein 98.6 8.2E-08 2.8E-12 74.4 6.1 32 265-296 31-62 (180)
213 3pvs_A Replication-associated 98.6 8.5E-08 2.9E-12 85.0 6.8 59 233-304 21-82 (447)
214 1in4_A RUVB, holliday junction 98.5 1.2E-07 4.1E-12 81.1 7.2 63 233-303 20-82 (334)
215 2p65_A Hypothetical protein PF 98.5 1.2E-07 4.1E-12 73.5 6.5 58 234-304 18-85 (187)
216 2r44_A Uncharacterized protein 98.5 9.2E-08 3.1E-12 81.7 6.3 53 237-304 26-78 (331)
217 3co5_A Putative two-component 98.5 1.9E-08 6.5E-13 75.0 1.6 53 240-304 6-58 (143)
218 3pih_A Uvrabc system protein A 98.5 6.5E-09 2.2E-13 98.9 -1.6 65 161-234 460-526 (916)
219 3hr8_A Protein RECA; alpha and 98.5 1.8E-06 6.1E-11 73.8 13.1 78 9-86 57-153 (356)
220 2w0m_A SSO2452; RECA, SSPF, un 98.5 1.1E-06 3.9E-11 70.7 11.1 37 9-45 19-58 (235)
221 3qf7_A RAD50; ABC-ATPase, ATPa 98.5 6.1E-08 2.1E-12 83.8 3.4 64 162-234 276-345 (365)
222 3n70_A Transport activator; si 98.5 1E-07 3.6E-12 71.1 4.1 32 272-304 24-58 (145)
223 4aby_A DNA repair protein RECN 98.5 9.5E-08 3.2E-12 84.2 4.3 59 166-234 296-356 (415)
224 3dzd_A Transcriptional regulat 98.5 4.9E-06 1.7E-10 71.8 14.9 164 13-194 152-358 (368)
225 1g8p_A Magnesium-chelatase 38 98.4 1.3E-07 4.3E-12 81.3 4.6 52 233-297 19-70 (350)
226 1pzn_A RAD51, DNA repair and r 98.4 1.4E-06 4.7E-11 74.8 11.0 41 8-48 126-175 (349)
227 1ny5_A Transcriptional regulat 98.4 8.1E-06 2.8E-10 71.0 15.5 180 12-215 159-382 (387)
228 2chg_A Replication factor C sm 98.4 4.4E-07 1.5E-11 72.4 7.0 52 232-296 11-62 (226)
229 3pxg_A Negative regulator of g 98.4 3.1E-07 1.1E-11 82.1 6.4 59 233-304 175-243 (468)
230 2ygr_A Uvrabc system protein A 98.4 2.7E-09 9.3E-14 101.4 -7.2 123 161-292 517-688 (993)
231 3pih_A Uvrabc system protein A 98.4 4E-08 1.4E-12 93.6 0.6 66 160-234 800-868 (916)
232 2vf7_A UVRA2, excinuclease ABC 98.4 3.1E-09 1.1E-13 100.3 -7.1 125 161-294 375-546 (842)
233 3lda_A DNA repair protein RAD5 98.4 2.8E-06 9.6E-11 73.9 11.5 102 9-110 174-315 (400)
234 2bjv_A PSP operon transcriptio 98.4 3.3E-07 1.1E-11 75.6 5.4 58 236-304 4-64 (265)
235 2r6f_A Excinuclease ABC subuni 98.4 1.6E-09 5.4E-14 102.7 -9.7 66 161-235 500-567 (972)
236 4fcw_A Chaperone protein CLPB; 98.4 5.6E-07 1.9E-11 76.0 6.8 63 238-304 17-82 (311)
237 1l8q_A Chromosomal replication 98.4 8.4E-07 2.9E-11 75.4 7.8 34 271-304 36-72 (324)
238 3jvv_A Twitching mobility prot 98.4 1.6E-07 5.6E-12 80.5 3.3 79 4-82 114-206 (356)
239 3vaa_A Shikimate kinase, SK; s 98.4 3.1E-07 1.1E-11 72.3 4.7 37 8-44 20-56 (199)
240 1zp6_A Hypothetical protein AT 98.4 3E-07 1E-11 71.8 4.4 39 9-47 5-43 (191)
241 3te6_A Regulatory protein SIR3 98.4 2.5E-07 8.6E-12 77.8 4.2 35 270-304 43-87 (318)
242 1htw_A HI0065; nucleotide-bind 98.3 3E-07 1E-11 69.5 4.0 37 7-44 27-63 (158)
243 2ygr_A Uvrabc system protein A 98.3 3.4E-08 1.1E-12 94.1 -1.8 65 161-234 859-926 (993)
244 2chq_A Replication factor C sm 98.3 4.4E-07 1.5E-11 76.7 5.2 60 232-304 11-75 (319)
245 2v1u_A Cell division control p 98.3 1E-06 3.4E-11 76.6 7.3 60 236-304 17-85 (387)
246 1v5w_A DMC1, meiotic recombina 98.3 3.4E-06 1.2E-10 72.2 10.3 78 9-86 118-233 (343)
247 1svm_A Large T antigen; AAA+ f 98.3 2.2E-07 7.4E-12 80.2 2.8 58 245-303 133-200 (377)
248 2qby_B CDC6 homolog 3, cell di 98.3 7.4E-07 2.5E-11 77.5 6.2 58 238-304 20-88 (384)
249 2ewv_A Twitching motility prot 98.3 2.2E-07 7.4E-12 80.4 2.8 79 4-82 127-219 (372)
250 1sxj_C Activator 1 40 kDa subu 98.3 8.5E-07 2.9E-11 75.9 6.4 53 231-296 18-70 (340)
251 2dzn_B 26S protease regulatory 98.3 2.4E-07 8.1E-12 61.7 2.3 68 150-221 2-69 (82)
252 1qhx_A CPT, protein (chloramph 98.3 1.9E-06 6.6E-11 66.3 7.8 35 13-47 3-37 (178)
253 1sxj_D Activator 1 41 kDa subu 98.3 6.8E-07 2.3E-11 76.8 5.4 54 231-297 30-83 (353)
254 2z43_A DNA repair and recombin 98.3 4.5E-06 1.5E-10 70.9 10.3 78 9-86 103-217 (324)
255 1xp8_A RECA protein, recombina 98.3 8.4E-06 2.9E-10 70.1 12.0 77 9-86 70-166 (366)
256 1iqp_A RFCS; clamp loader, ext 98.3 1E-06 3.5E-11 74.7 6.2 52 232-296 19-70 (327)
257 2vf7_A UVRA2, excinuclease ABC 98.3 3.8E-08 1.3E-12 92.9 -3.0 66 160-234 725-793 (842)
258 2zr9_A Protein RECA, recombina 98.3 1.1E-05 3.7E-10 69.1 12.4 79 8-86 56-153 (349)
259 2r6f_A Excinuclease ABC subuni 98.3 6.6E-08 2.3E-12 91.8 -1.6 65 161-234 841-908 (972)
260 1tue_A Replication protein E1; 98.3 4.2E-07 1.4E-11 70.8 3.1 28 271-298 57-84 (212)
261 2pt7_A CAG-ALFA; ATPase, prote 98.3 1.9E-07 6.6E-12 79.4 1.3 77 7-83 165-251 (330)
262 3f8t_A Predicted ATPase involv 98.3 5.6E-05 1.9E-09 66.3 16.6 187 15-221 241-484 (506)
263 3bos_A Putative DNA replicatio 98.2 1.8E-06 6.1E-11 69.8 6.9 56 235-303 25-86 (242)
264 1znw_A Guanylate kinase, GMP k 98.2 7.1E-07 2.4E-11 70.7 3.8 36 3-38 10-45 (207)
265 1kag_A SKI, shikimate kinase I 98.2 1.2E-06 4E-11 67.2 4.8 31 12-42 3-33 (173)
266 1sxj_B Activator 1 37 kDa subu 98.2 1.5E-06 5.2E-11 73.6 5.9 59 232-303 15-78 (323)
267 2w58_A DNAI, primosome compone 98.2 9.3E-07 3.2E-11 69.7 4.3 31 273-303 55-88 (202)
268 1nlf_A Regulatory protein REPA 98.2 6.8E-06 2.3E-10 68.2 9.5 34 2-37 21-54 (279)
269 2qby_A CDC6 homolog 1, cell di 98.2 2.3E-06 7.9E-11 74.2 7.0 61 235-304 17-83 (386)
270 1njg_A DNA polymerase III subu 98.2 1.8E-06 6.1E-11 69.7 5.8 54 233-298 18-71 (250)
271 1jr3_D DNA polymerase III, del 98.2 6.9E-05 2.4E-09 64.0 16.0 178 11-219 16-208 (343)
272 1u0j_A DNA replication protein 98.2 8.2E-06 2.8E-10 66.5 9.4 35 11-46 102-136 (267)
273 1sxj_E Activator 1 40 kDa subu 98.2 1.3E-06 4.6E-11 75.0 4.9 53 232-296 8-60 (354)
274 3umf_A Adenylate kinase; rossm 98.2 1.2E-06 4E-11 69.7 3.9 36 268-303 25-60 (217)
275 1z6g_A Guanylate kinase; struc 98.2 1E-06 3.5E-11 70.4 3.6 31 7-37 17-47 (218)
276 1jr3_A DNA polymerase III subu 98.2 2.7E-06 9.1E-11 73.6 6.4 55 232-298 10-64 (373)
277 2dr3_A UPF0273 protein PH0284; 98.1 1.9E-05 6.4E-10 64.0 11.1 38 9-46 19-59 (247)
278 3tr0_A Guanylate kinase, GMP k 98.1 1.4E-06 4.6E-11 68.8 4.0 31 8-38 2-32 (205)
279 3io5_A Recombination and repai 98.1 1.9E-05 6.6E-10 65.8 10.8 78 8-86 24-125 (333)
280 1tf7_A KAIC; homohexamer, hexa 98.1 1.1E-05 3.9E-10 73.0 10.4 114 9-127 35-188 (525)
281 1u0j_A DNA replication protein 98.1 1.3E-06 4.4E-11 71.2 3.6 27 272-298 104-130 (267)
282 4eun_A Thermoresistant glucoki 98.1 2.2E-06 7.5E-11 67.5 4.9 37 10-48 26-62 (200)
283 1u94_A RECA protein, recombina 98.1 1.9E-05 6.6E-10 67.6 11.0 78 9-86 59-155 (356)
284 2kjq_A DNAA-related protein; s 98.1 1.6E-06 5.6E-11 64.8 3.7 33 271-303 35-70 (149)
285 1fnn_A CDC6P, cell division co 98.1 3.6E-06 1.2E-10 73.2 6.5 60 236-304 15-80 (389)
286 3nbx_X ATPase RAVA; AAA+ ATPas 98.1 3.4E-06 1.2E-10 75.5 6.2 44 240-298 24-67 (500)
287 2v9p_A Replication protein E1; 98.1 1.7E-06 5.8E-11 72.3 3.9 31 7-37 120-150 (305)
288 1y63_A LMAJ004144AAA protein; 98.1 3E-06 1E-10 65.8 5.1 37 8-44 5-42 (184)
289 2rhm_A Putative kinase; P-loop 98.1 2.8E-06 9.7E-11 66.2 4.9 35 9-43 1-35 (193)
290 3uie_A Adenylyl-sulfate kinase 98.1 5E-06 1.7E-10 65.4 6.3 39 8-46 20-61 (200)
291 1tf7_A KAIC; homohexamer, hexa 98.1 3.7E-08 1.3E-12 89.4 -6.9 63 162-234 350-417 (525)
292 3nwj_A ATSK2; P loop, shikimat 98.1 1.2E-06 4E-11 71.4 2.6 30 274-303 50-79 (250)
293 3trf_A Shikimate kinase, SK; a 98.1 2.9E-06 1E-10 65.8 4.6 32 13-44 5-36 (185)
294 1knq_A Gluconate kinase; ALFA/ 98.1 3.5E-06 1.2E-10 64.7 4.9 31 11-41 6-36 (175)
295 2z4s_A Chromosomal replication 98.1 2.2E-06 7.6E-11 75.9 4.3 33 272-304 130-167 (440)
296 3c8u_A Fructokinase; YP_612366 98.1 3.6E-06 1.2E-10 66.7 5.0 38 10-47 19-59 (208)
297 3nwj_A ATSK2; P loop, shikimat 98.1 2E-06 6.9E-11 70.0 3.5 37 8-44 40-79 (250)
298 2jeo_A Uridine-cytidine kinase 98.1 2.5E-06 8.5E-11 69.5 4.0 33 7-39 19-51 (245)
299 4eun_A Thermoresistant glucoki 98.0 3E-06 1E-10 66.7 4.2 31 272-302 29-59 (200)
300 2p5t_B PEZT; postsegregational 98.0 9.3E-06 3.2E-10 66.4 7.1 40 10-49 29-68 (253)
301 3iij_A Coilin-interacting nucl 98.0 5E-06 1.7E-10 64.1 5.2 36 9-44 7-42 (180)
302 3thx_B DNA mismatch repair pro 98.0 1.8E-05 6.3E-10 75.6 9.9 28 8-35 668-695 (918)
303 3asz_A Uridine kinase; cytidin 98.0 4.3E-06 1.5E-10 66.3 4.7 39 10-48 3-41 (211)
304 1htw_A HI0065; nucleotide-bind 98.0 2.1E-06 7.3E-11 64.7 2.6 33 264-296 23-57 (158)
305 1s96_A Guanylate kinase, GMP k 98.0 3.8E-06 1.3E-10 67.0 4.1 32 8-39 11-42 (219)
306 2qgz_A Helicase loader, putati 98.0 5.3E-06 1.8E-10 69.9 5.1 26 272-297 152-177 (308)
307 2zts_A Putative uncharacterize 98.0 5E-05 1.7E-09 61.6 10.7 38 9-46 26-67 (251)
308 1tq4_A IIGP1, interferon-induc 98.0 1.5E-06 5.3E-11 75.7 1.6 47 166-221 155-213 (413)
309 1via_A Shikimate kinase; struc 98.0 5.3E-06 1.8E-10 63.7 4.5 29 15-43 6-34 (175)
310 1e69_A Chromosome segregation 98.0 8.7E-07 3E-11 75.3 -0.0 62 163-234 217-282 (322)
311 3tlx_A Adenylate kinase 2; str 98.0 3.5E-06 1.2E-10 68.5 3.5 33 271-303 28-60 (243)
312 3cm0_A Adenylate kinase; ATP-b 98.0 5.3E-06 1.8E-10 64.3 4.4 31 12-42 3-33 (186)
313 2gza_A Type IV secretion syste 98.0 4.4E-06 1.5E-10 72.0 4.2 76 7-82 169-262 (361)
314 2r6a_A DNAB helicase, replicat 98.0 4.4E-05 1.5E-09 67.9 10.8 39 8-46 198-240 (454)
315 1gvn_B Zeta; postsegregational 98.0 9.2E-06 3.1E-10 67.7 6.0 32 272-303 33-64 (287)
316 1lvg_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 66.0 3.4 28 11-38 2-29 (198)
317 2j41_A Guanylate kinase; GMP, 98.0 4.3E-06 1.5E-10 66.0 3.6 31 9-39 2-32 (207)
318 3kb2_A SPBC2 prophage-derived 98.0 6.1E-06 2.1E-10 63.0 4.4 30 15-44 3-32 (173)
319 2bbw_A Adenylate kinase 4, AK4 98.0 5.7E-06 2E-10 67.3 4.4 37 4-41 19-55 (246)
320 3b85_A Phosphate starvation-in 98.0 2.6E-06 8.9E-11 67.4 2.2 57 169-240 108-164 (208)
321 1p9r_A General secretion pathw 97.9 5.9E-06 2E-10 72.3 4.5 78 4-81 158-245 (418)
322 3k1j_A LON protease, ATP-depen 97.9 6.6E-06 2.2E-10 75.9 4.9 54 230-298 33-86 (604)
323 1cke_A CK, MSSA, protein (cyti 97.9 8.8E-06 3E-10 65.2 5.1 30 13-42 5-34 (227)
324 2bbw_A Adenylate kinase 4, AK4 97.9 5.7E-06 1.9E-10 67.3 3.9 31 272-302 27-57 (246)
325 4e22_A Cytidylate kinase; P-lo 97.9 9.2E-06 3.1E-10 66.4 5.1 32 11-42 25-56 (252)
326 3lnc_A Guanylate kinase, GMP k 97.9 2.7E-06 9.2E-11 68.6 1.9 32 7-38 21-53 (231)
327 2i1q_A DNA repair and recombin 97.9 5E-05 1.7E-09 64.3 9.8 28 9-36 94-121 (322)
328 1kgd_A CASK, peripheral plasma 97.9 7.1E-06 2.4E-10 63.4 4.1 28 11-38 3-30 (180)
329 2pez_A Bifunctional 3'-phospho 97.9 1.1E-05 3.7E-10 62.2 5.1 36 11-46 3-41 (179)
330 1zuh_A Shikimate kinase; alpha 97.9 8.7E-06 3E-10 62.0 4.5 31 14-44 8-38 (168)
331 3t61_A Gluconokinase; PSI-biol 97.9 8.8E-06 3E-10 64.0 4.6 31 13-43 18-48 (202)
332 1z6t_A APAF-1, apoptotic prote 97.9 0.0002 6.8E-09 65.9 14.2 146 12-183 146-322 (591)
333 2oap_1 GSPE-2, type II secreti 97.9 2.4E-06 8.3E-11 76.8 1.2 74 8-81 255-342 (511)
334 1vma_A Cell division protein F 97.9 3.5E-05 1.2E-09 64.6 8.2 28 10-37 101-128 (306)
335 3a00_A Guanylate kinase, GMP k 97.9 6.6E-06 2.3E-10 63.9 3.6 27 13-39 1-27 (186)
336 3b9q_A Chloroplast SRP recepto 97.9 7.5E-06 2.6E-10 68.6 4.1 32 8-39 95-126 (302)
337 3umf_A Adenylate kinase; rossm 97.9 1.2E-05 4.3E-10 63.7 5.1 41 8-50 24-64 (217)
338 2q6t_A DNAB replication FORK h 97.9 7.9E-05 2.7E-09 66.1 10.8 39 8-46 195-237 (444)
339 2ze6_A Isopentenyl transferase 97.9 8E-06 2.7E-10 66.7 4.1 32 15-46 3-34 (253)
340 2iyv_A Shikimate kinase, SK; t 97.9 9.4E-06 3.2E-10 62.8 4.3 31 14-44 3-33 (184)
341 3bh0_A DNAB-like replicative h 97.9 0.00013 4.5E-09 61.5 11.6 39 8-46 63-104 (315)
342 2c95_A Adenylate kinase 1; tra 97.9 1.2E-05 4.1E-10 62.8 4.9 34 11-44 7-40 (196)
343 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 3.6E-05 1.2E-09 63.1 7.9 38 12-49 3-43 (260)
344 4e22_A Cytidylate kinase; P-lo 97.9 8.1E-06 2.8E-10 66.7 3.9 33 270-302 25-57 (252)
345 2p5t_B PEZT; postsegregational 97.9 7.6E-06 2.6E-10 66.9 3.7 33 271-303 31-63 (253)
346 3thx_A DNA mismatch repair pro 97.9 6.3E-05 2.2E-09 72.2 10.4 27 8-34 657-683 (934)
347 1aky_A Adenylate kinase; ATP:A 97.9 1.3E-05 4.5E-10 64.0 4.9 32 12-43 3-34 (220)
348 1gvn_B Zeta; postsegregational 97.9 8.7E-06 3E-10 67.8 3.9 39 11-49 31-69 (287)
349 2cdn_A Adenylate kinase; phosp 97.9 1.4E-05 4.8E-10 62.8 4.9 33 12-44 19-51 (201)
350 2v9p_A Replication protein E1; 97.9 6.1E-06 2.1E-10 69.0 2.8 35 262-296 114-150 (305)
351 1tev_A UMP-CMP kinase; ploop, 97.8 1.4E-05 4.8E-10 62.3 4.8 30 13-42 3-32 (196)
352 3f9v_A Minichromosome maintena 97.8 2.9E-06 1E-10 77.9 0.8 61 239-301 296-356 (595)
353 3tau_A Guanylate kinase, GMP k 97.8 1.2E-05 4.2E-10 63.6 4.3 29 11-39 6-34 (208)
354 1kht_A Adenylate kinase; phosp 97.8 1.2E-05 4.2E-10 62.5 4.1 26 13-38 3-28 (192)
355 2obl_A ESCN; ATPase, hydrolase 97.8 1.3E-05 4.5E-10 68.5 4.4 37 8-44 66-102 (347)
356 2og2_A Putative signal recogni 97.8 1.2E-05 4E-10 68.9 4.1 32 8-39 152-183 (359)
357 3aez_A Pantothenate kinase; tr 97.8 1E-05 3.5E-10 68.1 3.6 30 10-39 87-116 (312)
358 2dpy_A FLII, flagellum-specifi 97.8 1.7E-05 5.8E-10 69.9 5.1 38 8-45 152-189 (438)
359 1zd8_A GTP:AMP phosphotransfer 97.8 1.6E-05 5.6E-10 63.7 4.7 33 11-43 5-37 (227)
360 1e6c_A Shikimate kinase; phosp 97.8 1.7E-05 5.7E-10 60.6 4.5 30 14-43 3-32 (173)
361 1ly1_A Polynucleotide kinase; 97.8 1.3E-05 4.5E-10 61.6 3.9 27 14-40 3-30 (181)
362 3crm_A TRNA delta(2)-isopenten 97.8 8.1E-05 2.8E-09 62.5 8.9 35 13-47 5-39 (323)
363 2qor_A Guanylate kinase; phosp 97.8 1.4E-05 4.7E-10 63.1 4.0 31 8-38 7-37 (204)
364 3ney_A 55 kDa erythrocyte memb 97.8 1.7E-05 5.7E-10 61.9 4.3 33 6-38 12-44 (197)
365 3lw7_A Adenylate kinase relate 97.8 1.8E-05 6E-10 60.5 4.4 29 15-44 3-31 (179)
366 3tif_A Uncharacterized ABC tra 97.8 2.8E-06 9.7E-11 68.6 -0.2 34 264-297 21-56 (235)
367 2qt1_A Nicotinamide riboside k 97.8 1.7E-05 6E-10 62.6 4.4 38 10-49 18-56 (207)
368 2vli_A Antibiotic resistance p 97.8 1.1E-05 3.9E-10 62.2 3.3 31 12-42 4-34 (183)
369 2bwj_A Adenylate kinase 5; pho 97.8 2E-05 6.7E-10 61.7 4.6 33 11-43 10-42 (199)
370 3r20_A Cytidylate kinase; stru 97.8 2.1E-05 7.2E-10 63.1 4.8 32 12-43 8-39 (233)
371 2i3b_A HCR-ntpase, human cance 97.8 1.3E-05 4.4E-10 62.3 3.5 25 13-37 1-25 (189)
372 1qf9_A UMP/CMP kinase, protein 97.8 2.6E-05 8.8E-10 60.7 5.2 33 12-44 5-37 (194)
373 1g6h_A High-affinity branched- 97.8 3.8E-06 1.3E-10 68.8 0.4 35 263-297 22-58 (257)
374 2bdt_A BH3686; alpha-beta prot 97.8 2E-05 7E-10 61.2 4.5 33 13-46 2-34 (189)
375 2if2_A Dephospho-COA kinase; a 97.8 1.9E-05 6.6E-10 62.1 4.4 29 15-44 3-31 (204)
376 3sfz_A APAF-1, apoptotic pepti 97.8 0.00051 1.8E-08 68.6 15.6 146 11-182 145-321 (1249)
377 1ukz_A Uridylate kinase; trans 97.8 2.9E-05 1E-09 61.0 5.4 33 12-44 14-46 (203)
378 1b0u_A Histidine permease; ABC 97.8 3.4E-06 1.2E-10 69.3 -0.1 35 263-297 21-57 (262)
379 3tlx_A Adenylate kinase 2; str 97.8 2.5E-05 8.6E-10 63.4 5.0 34 11-44 27-60 (243)
380 2pcj_A ABC transporter, lipopr 97.8 2.6E-06 9E-11 68.2 -0.9 35 263-297 19-55 (224)
381 2cbz_A Multidrug resistance-as 97.8 3.1E-06 1.1E-10 68.4 -0.5 35 263-297 20-56 (237)
382 1cr0_A DNA primase/helicase; R 97.7 1.6E-05 5.6E-10 66.5 3.9 30 8-37 30-59 (296)
383 3b9q_A Chloroplast SRP recepto 97.7 1.9E-05 6.5E-10 66.2 4.2 30 267-296 93-124 (302)
384 2pt5_A Shikimate kinase, SK; a 97.7 2.5E-05 8.4E-10 59.4 4.5 29 15-43 2-30 (168)
385 2v54_A DTMP kinase, thymidylat 97.7 2.7E-05 9.3E-10 61.2 4.8 34 12-45 3-37 (204)
386 2yhs_A FTSY, cell division pro 97.7 1.8E-05 6.2E-10 70.1 4.1 32 8-39 288-319 (503)
387 1lw7_A Transcriptional regulat 97.7 1.6E-05 5.4E-10 68.7 3.7 36 6-41 161-198 (365)
388 2yvu_A Probable adenylyl-sulfa 97.7 2.3E-05 7.7E-10 60.8 4.2 32 7-38 7-38 (186)
389 3dl0_A Adenylate kinase; phosp 97.7 2.4E-05 8.1E-10 62.2 4.5 30 15-44 2-31 (216)
390 2olj_A Amino acid ABC transpor 97.7 4E-06 1.4E-10 68.8 -0.1 35 263-297 39-75 (263)
391 1rz3_A Hypothetical protein rb 97.7 5.1E-05 1.8E-09 59.6 6.3 38 8-45 17-57 (201)
392 3fvq_A Fe(3+) IONS import ATP- 97.7 3.9E-06 1.3E-10 71.7 -0.2 35 263-297 19-55 (359)
393 1jjv_A Dephospho-COA kinase; P 97.7 2.2E-05 7.7E-10 61.9 4.2 27 15-42 4-30 (206)
394 3fb4_A Adenylate kinase; psych 97.7 2.5E-05 8.4E-10 62.1 4.4 30 15-44 2-31 (216)
395 3gfo_A Cobalt import ATP-bindi 97.7 3.5E-06 1.2E-10 69.5 -0.6 35 263-297 23-59 (275)
396 3be4_A Adenylate kinase; malar 97.7 2.5E-05 8.6E-10 62.2 4.4 32 13-44 5-36 (217)
397 1ak2_A Adenylate kinase isoenz 97.7 3.2E-05 1.1E-09 62.3 5.1 32 12-43 15-46 (233)
398 1zak_A Adenylate kinase; ATP:A 97.7 2E-05 6.9E-10 62.9 3.8 31 12-42 4-34 (222)
399 2ius_A DNA translocase FTSK; n 97.7 0.00063 2.1E-08 60.9 13.6 76 72-156 296-374 (512)
400 1ji0_A ABC transporter; ATP bi 97.7 3.7E-06 1.3E-10 68.1 -0.7 35 263-297 21-57 (240)
401 3a8t_A Adenylate isopentenyltr 97.7 1.8E-05 6.3E-10 66.7 3.5 31 274-304 42-72 (339)
402 2zu0_C Probable ATP-dependent 97.7 5.2E-06 1.8E-10 68.4 0.1 33 263-295 35-69 (267)
403 3sop_A Neuronal-specific septi 97.7 1.8E-05 6.3E-10 65.2 3.4 30 15-44 4-33 (270)
404 1sgw_A Putative ABC transporte 97.7 5.4E-06 1.8E-10 65.8 0.1 35 263-297 24-60 (214)
405 1vpl_A ABC transporter, ATP-bi 97.7 5E-06 1.7E-10 68.0 -0.1 35 263-297 30-66 (256)
406 1rj9_A FTSY, signal recognitio 97.7 1.3E-05 4.3E-10 67.3 2.3 29 12-40 101-129 (304)
407 3sr0_A Adenylate kinase; phosp 97.7 3.3E-05 1.1E-09 60.9 4.6 34 15-50 2-35 (206)
408 3rlf_A Maltose/maltodextrin im 97.7 5.4E-06 1.8E-10 71.4 0.1 34 264-297 19-54 (381)
409 2vhj_A Ntpase P4, P4; non- hyd 97.7 6.7E-06 2.3E-10 68.8 0.5 36 268-303 119-156 (331)
410 4g1u_C Hemin import ATP-bindin 97.7 4.3E-06 1.5E-10 68.8 -0.7 35 263-297 26-62 (266)
411 1wb9_A DNA mismatch repair pro 97.7 0.0002 6.7E-09 67.8 10.2 26 11-36 605-630 (800)
412 2ghi_A Transport protein; mult 97.7 5E-06 1.7E-10 68.2 -0.5 35 263-297 35-71 (260)
413 2yyz_A Sugar ABC transporter, 97.7 6.1E-06 2.1E-10 70.6 0.0 34 264-297 19-54 (359)
414 2pze_A Cystic fibrosis transme 97.7 5.7E-06 1.9E-10 66.5 -0.2 35 263-297 23-59 (229)
415 2qmh_A HPR kinase/phosphorylas 97.7 2.7E-05 9.1E-10 60.4 3.5 31 272-303 34-64 (205)
416 2og2_A Putative signal recogni 97.7 3.9E-05 1.4E-09 65.6 4.9 30 267-296 150-181 (359)
417 2jaq_A Deoxyguanosine kinase; 97.7 3.7E-05 1.3E-09 60.4 4.4 28 15-42 2-29 (205)
418 2it1_A 362AA long hypothetical 97.7 6.6E-06 2.3E-10 70.5 0.1 34 264-297 19-54 (362)
419 2d2e_A SUFC protein; ABC-ATPas 97.7 5.4E-06 1.8E-10 67.6 -0.5 32 264-295 19-52 (250)
420 2yz2_A Putative ABC transporte 97.7 6.3E-06 2.1E-10 67.9 -0.2 35 263-297 22-58 (266)
421 3euj_A Chromosome partition pr 97.6 2.5E-05 8.7E-10 69.3 3.6 36 7-43 24-59 (483)
422 1q3t_A Cytidylate kinase; nucl 97.6 4.8E-05 1.7E-09 61.4 5.0 34 10-43 13-46 (236)
423 2a5y_B CED-4; apoptosis; HET: 97.6 0.0012 4.1E-08 60.1 14.8 147 12-182 151-330 (549)
424 1z47_A CYSA, putative ABC-tran 97.6 5.8E-06 2E-10 70.6 -0.5 35 263-297 30-66 (355)
425 2ihy_A ABC transporter, ATP-bi 97.6 7.3E-06 2.5E-10 67.9 0.1 35 263-297 36-72 (279)
426 1v43_A Sugar-binding transport 97.6 7.2E-06 2.5E-10 70.6 0.1 35 263-297 26-62 (372)
427 1vht_A Dephospho-COA kinase; s 97.6 5E-05 1.7E-09 60.4 5.0 31 12-43 3-33 (218)
428 2qm8_A GTPase/ATPase; G protei 97.6 6.6E-05 2.2E-09 64.0 5.9 30 8-37 50-79 (337)
429 2ixe_A Antigen peptide transpo 97.6 9.1E-06 3.1E-10 67.0 0.6 35 263-297 34-70 (271)
430 2ff7_A Alpha-hemolysin translo 97.6 7.7E-06 2.6E-10 66.5 0.1 35 263-297 24-60 (247)
431 3kta_A Chromosome segregation 97.6 3.1E-05 1.1E-09 59.7 3.6 31 8-39 22-52 (182)
432 2nq2_C Hypothetical ABC transp 97.6 6E-06 2E-10 67.4 -0.6 35 263-297 20-56 (253)
433 1e4v_A Adenylate kinase; trans 97.6 4.1E-05 1.4E-09 60.8 4.3 30 15-44 2-31 (214)
434 1oxx_K GLCV, glucose, ABC tran 97.6 5.6E-06 1.9E-10 70.8 -0.9 34 264-297 21-56 (353)
435 1sq5_A Pantothenate kinase; P- 97.6 2.9E-05 9.9E-10 65.4 3.3 28 11-38 78-105 (308)
436 3e70_C DPA, signal recognition 97.6 3.9E-05 1.4E-09 64.9 3.9 29 11-39 127-155 (328)
437 1uf9_A TT1252 protein; P-loop, 97.6 5.6E-05 1.9E-09 59.3 4.6 30 13-43 8-37 (203)
438 2plr_A DTMP kinase, probable t 97.6 4.4E-05 1.5E-09 60.3 4.0 28 13-40 4-31 (213)
439 2xb4_A Adenylate kinase; ATP-b 97.6 5.7E-05 1.9E-09 60.4 4.6 28 15-42 2-29 (223)
440 2ehv_A Hypothetical protein PH 97.6 2.4E-05 8.3E-10 63.5 2.5 26 268-293 26-51 (251)
441 2pbr_A DTMP kinase, thymidylat 97.6 6E-05 2.1E-09 58.6 4.7 31 15-45 2-35 (195)
442 1g29_1 MALK, maltose transport 97.6 7.9E-06 2.7E-10 70.4 -0.5 34 264-297 19-54 (372)
443 2o8b_B DNA mismatch repair pro 97.6 0.00039 1.3E-08 67.5 11.1 23 13-36 789-811 (1022)
444 2orw_A Thymidine kinase; TMTK, 97.6 7.7E-05 2.6E-09 57.7 5.1 24 13-36 3-26 (184)
445 2wwf_A Thymidilate kinase, put 97.6 1.8E-05 6.2E-10 62.6 1.6 30 11-40 8-37 (212)
446 2iut_A DNA translocase FTSK; n 97.6 0.00099 3.4E-08 60.1 12.9 74 74-156 345-420 (574)
447 2grj_A Dephospho-COA kinase; T 97.6 6.3E-05 2.2E-09 58.6 4.6 31 13-43 12-42 (192)
448 2qag_B Septin-6, protein NEDD5 97.6 3.1E-05 1.1E-09 67.5 3.1 30 7-36 34-65 (427)
449 2ga8_A Hypothetical 39.9 kDa p 97.6 1.5E-05 5.1E-10 67.6 1.0 34 10-43 19-54 (359)
450 2f6r_A COA synthase, bifunctio 97.6 3.9E-05 1.3E-09 63.7 3.5 29 274-303 77-105 (281)
451 1nks_A Adenylate kinase; therm 97.6 3.7E-05 1.3E-09 59.8 3.1 24 15-38 3-26 (194)
452 2z0h_A DTMP kinase, thymidylat 97.6 6.9E-05 2.3E-09 58.4 4.7 30 15-44 2-34 (197)
453 2dpy_A FLII, flagellum-specifi 97.6 5.3E-05 1.8E-09 66.8 4.4 41 262-303 146-188 (438)
454 1uj2_A Uridine-cytidine kinase 97.6 8.3E-05 2.9E-09 60.6 5.3 40 12-51 21-68 (252)
455 3gd7_A Fusion complex of cysti 97.6 8.9E-06 3E-10 70.4 -0.5 34 263-296 36-71 (390)
456 2bbs_A Cystic fibrosis transme 97.6 1.3E-05 4.5E-10 66.6 0.5 36 262-297 52-89 (290)
457 3ake_A Cytidylate kinase; CMP 97.6 6.4E-05 2.2E-09 59.2 4.4 30 15-44 4-33 (208)
458 3tqc_A Pantothenate kinase; bi 97.5 6.5E-05 2.2E-09 63.2 4.6 28 11-38 90-117 (321)
459 1ewq_A DNA mismatch repair pro 97.5 9.4E-05 3.2E-09 69.6 6.0 30 7-37 571-600 (765)
460 3zvl_A Bifunctional polynucleo 97.5 3.9E-05 1.3E-09 67.3 3.3 32 272-303 258-289 (416)
461 1m7g_A Adenylylsulfate kinase; 97.5 4.4E-05 1.5E-09 60.4 3.3 39 8-46 20-62 (211)
462 2pjz_A Hypothetical protein ST 97.5 1.1E-05 3.9E-10 66.1 -0.2 32 264-296 21-54 (263)
463 1mv5_A LMRA, multidrug resista 97.5 2.6E-05 8.7E-10 63.3 1.9 27 271-297 27-53 (243)
464 3tui_C Methionine import ATP-b 97.5 1.3E-05 4.4E-10 68.6 0.1 35 263-297 43-79 (366)
465 3dm5_A SRP54, signal recogniti 97.5 0.0018 6.2E-08 56.8 13.5 71 12-82 99-192 (443)
466 1nn5_A Similar to deoxythymidy 97.5 2.4E-05 8.3E-10 62.0 1.5 30 10-39 6-35 (215)
467 2obl_A ESCN; ATPase, hydrolase 97.5 6E-05 2.1E-09 64.4 3.7 39 262-301 60-100 (347)
468 3bgw_A DNAB-like replicative h 97.5 0.0011 3.7E-08 58.6 11.7 38 9-46 193-233 (444)
469 3kl4_A SRP54, signal recogniti 97.5 0.0014 4.9E-08 57.3 12.2 72 12-83 96-190 (433)
470 3a8t_A Adenylate isopentenyltr 97.5 8.8E-05 3E-09 62.5 4.3 35 13-47 40-74 (339)
471 2b8t_A Thymidine kinase; deoxy 97.4 0.00014 4.7E-09 58.0 5.0 72 12-84 11-101 (223)
472 2f1r_A Molybdopterin-guanine d 97.4 3.9E-05 1.3E-09 58.5 1.8 31 14-44 3-36 (171)
473 2r8r_A Sensor protein; KDPD, P 97.4 0.00017 6E-09 57.1 5.5 33 14-46 7-42 (228)
474 1w5s_A Origin recognition comp 97.4 0.00019 6.6E-09 62.7 6.3 52 237-296 21-76 (412)
475 3lnc_A Guanylate kinase, GMP k 97.4 3.6E-05 1.2E-09 61.9 1.5 26 271-296 26-52 (231)
476 1pui_A ENGB, probable GTP-bind 97.4 3.6E-05 1.2E-09 60.7 1.4 34 4-37 17-50 (210)
477 3foz_A TRNA delta(2)-isopenten 97.4 0.00013 4.4E-09 60.7 4.7 38 12-49 9-46 (316)
478 4eaq_A DTMP kinase, thymidylat 97.4 0.00011 3.8E-09 58.9 4.2 29 11-39 24-52 (229)
479 3nh6_A ATP-binding cassette SU 97.4 2.5E-05 8.7E-10 65.4 0.2 35 263-297 69-105 (306)
480 1pzn_A RAD51, DNA repair and r 97.4 0.00016 5.6E-09 61.8 5.2 29 268-296 127-155 (349)
481 2h92_A Cytidylate kinase; ross 97.4 0.00015 5.1E-09 57.6 4.7 32 13-44 3-34 (219)
482 4a1f_A DNAB helicase, replicat 97.4 0.00025 8.5E-09 60.1 6.2 39 8-46 41-82 (338)
483 3aez_A Pantothenate kinase; tr 97.4 9E-05 3.1E-09 62.3 3.4 25 273-297 91-115 (312)
484 1sq5_A Pantothenate kinase; P- 97.4 9.8E-05 3.3E-09 62.1 3.5 25 273-297 81-105 (308)
485 2f6r_A COA synthase, bifunctio 97.4 0.00016 5.5E-09 59.9 4.7 29 13-42 75-103 (281)
486 2vp4_A Deoxynucleoside kinase; 97.4 7.2E-05 2.5E-09 60.1 2.4 29 8-36 15-43 (230)
487 1u0l_A Probable GTPase ENGC; p 97.3 9.3E-05 3.2E-09 62.0 3.1 34 12-45 168-201 (301)
488 1ex7_A Guanylate kinase; subst 97.3 0.00016 5.5E-09 55.9 4.2 25 15-39 3-27 (186)
489 1cr0_A DNA primase/helicase; R 97.3 9.4E-05 3.2E-09 61.8 3.1 30 267-296 30-59 (296)
490 3zvl_A Bifunctional polynucleo 97.3 0.00013 4.6E-09 63.9 4.3 32 10-41 255-286 (416)
491 3exa_A TRNA delta(2)-isopenten 97.3 0.00017 5.8E-09 60.1 4.4 35 13-47 3-37 (322)
492 2yhs_A FTSY, cell division pro 97.3 0.00011 3.9E-09 65.1 3.5 30 267-296 286-317 (503)
493 2fna_A Conserved hypothetical 97.3 0.00029 9.9E-09 60.1 6.1 52 236-304 11-62 (357)
494 1odf_A YGR205W, hypothetical 3 97.3 0.00014 4.8E-09 60.5 3.9 31 9-39 27-57 (290)
495 2rcn_A Probable GTPase ENGC; Y 97.3 9.5E-05 3.2E-09 63.1 2.9 33 12-44 214-247 (358)
496 2qmh_A HPR kinase/phosphorylas 97.3 0.00021 7E-09 55.4 4.2 31 12-43 33-63 (205)
497 3tqc_A Pantothenate kinase; bi 97.3 0.00015 5E-09 61.1 3.7 26 272-297 92-117 (321)
498 3d3q_A TRNA delta(2)-isopenten 97.3 0.00015 5.1E-09 61.3 3.7 32 14-45 8-39 (340)
499 1t9h_A YLOQ, probable GTPase E 97.3 3.1E-05 1.1E-09 64.8 -0.5 36 10-45 170-205 (307)
500 2ewv_A Twitching motility prot 97.3 9.7E-05 3.3E-09 63.8 2.6 35 263-297 127-161 (372)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.1e-60 Score=439.97 Aligned_cols=300 Identities=37% Similarity=0.672 Sum_probs=273.0
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++.+++++|||||||||||++++++|++++.+++.++++++.+++.|+.+..++.+|+.|..++||||||||+|
T Consensus 228 ~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp GGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred HHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhc
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+++.++.. +..++.+++++..++.+.. ...+++|++||.++.++++++|+|||+.+|+++.|+..+|.+|++.+++
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~~-~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred ccccccCCCCChHHHHHHHHHHHHHhcccc-cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 999876543 4556788899999998876 5679999999999999999999999999999999999999999998777
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC--------------CCccccHHHHHHHhhhcCCchhh
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG--------------TGQVLSYDGVMRALDHVKPSAMR 226 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~ 226 (305)
+.+..-+ -++..+|..|+||+++||..++++|...++.+... ....++.+||..++...+|+..+
T Consensus 387 ~~~~~~d-vdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 387 NMKLADD-VDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp SSEECTT-CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCC
T ss_pred CCCCCcc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccc
Confidence 6554433 36899999999999999999999998877643210 11246678999999999999888
Q ss_pred hhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....+.+...|++++|++++|+.+.+.+.||+++++.|.++|+.+++|+|||||||||||++|+++|++++.+|++|+
T Consensus 466 ~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 888889999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2e-43 Score=334.16 Aligned_cols=300 Identities=37% Similarity=0.677 Sum_probs=261.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++|+++++.++.+++|+|||||||||+++++|++++.+++.+++.++.+.+.+..+..+..+|+.+....|+++++||+|
T Consensus 228 ~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp GGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred HHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+++++... ....+....++..++.... ...++++++||.++.+++++++++||+..+.++.|+..+|.++++.+.+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred HhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 998775432 4445667777787776654 4678899999999999999999999999999999999999999997776
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcC--------------CCccccHHHHHHHhhhcCCchhh
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEG--------------TGQVLSYDGVMRALDHVKPSAMR 226 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~~ 226 (305)
+.... ...++..++..+.||+++|+..++..+....+++... .....+.+++..++....++..+
T Consensus 387 ~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~ 465 (806)
T 1ypw_A 387 NMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp TSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCC
T ss_pred cCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhh
Confidence 65443 3336788999999999999999999888766543221 12234566788888888887777
Q ss_pred hhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....+.+...|++++|++++++.+.+.+.||..+++.+..+++.++.+++|+||||||||++|+++|++++.+|++|+
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 543 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 777788889999999999999999999999999999999999999999999999999999999999999999999875
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-42 Score=295.84 Aligned_cols=216 Identities=27% Similarity=0.424 Sum_probs=193.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..|+..+|||+||||+|
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiD 251 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSS
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecch
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+++.+... ....+.+..++..++.+.. ...+++|++||.++.+|+++.|+|||+..|+++.|+..+|.+||+.
T Consensus 252 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET-SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp CCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC-CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred hhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC-CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 999876443 1234677888888888765 6789999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
++++.+..-+ -+++.+|..|+||+++||.++|++|...++++ ....++.+||..|++++.++
T Consensus 331 ~~~~~~l~~d-vdl~~lA~~t~G~SGADi~~l~~eA~~~Air~---~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 331 HSRKMNLTRG-INLRKVAEKMNGCSGADVKGVCTEAGMYALRE---RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHTTSBCCSS-CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---TCSBCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcc-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCc
Confidence 8887655433 36899999999999999999999999988876 44568899999999877543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-41 Score=291.80 Aligned_cols=216 Identities=23% Similarity=0.384 Sum_probs=192.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..|...+||||||||+|
T Consensus 206 e~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiD 285 (437)
T 4b4t_I 206 ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEID 285 (437)
T ss_dssp HHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEES
T ss_pred HHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.... ...+++|+|||.++.||+++.|+|||+..|+++.|+..+|.+||+.
T Consensus 286 ai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 286 AIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp SSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH
T ss_pred hhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH
Confidence 999877433 2234667778888887655 6779999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
++++.+..-+ -+++.+|..|+|||++||.++|.+|...++++ ....++.+||.+|++++.++
T Consensus 365 ~l~~~~l~~d-vdl~~LA~~T~GfSGADI~~l~~eA~~~Air~---~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 365 HTSKMNLSED-VNLETLVTTKDDLSGADIQAMCTEAGLLALRE---RRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHTTSCBCSC-CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT---TCSCBCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCc-CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHhCC
Confidence 8887664433 26899999999999999999999999988876 44568899999999877554
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-41 Score=294.19 Aligned_cols=218 Identities=28% Similarity=0.422 Sum_probs=194.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|..++||||||||+|
T Consensus 205 e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 205 DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCch-----hHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRSD-----QERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+.... ...+.+..++..++.+.. ...++||+|||.++.+|+++.|+|||+..|+++.|+..+|.+||+.
T Consensus 285 al~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 285 AIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp HHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHH
Confidence 9998875442 223566778888887765 5678999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchh
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAM 225 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (305)
++++.+..-+. +++.+|..|+||+++||.++|.+|...++++ ....++.+||.+++.+++++..
T Consensus 364 ~~~~~~~~~dv-dl~~lA~~t~G~sGADi~~l~~eA~~~a~r~---~~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 364 HSRKMTTDDDI-NWQELARSTDEFNGAQLKAVTVEAGMIALRN---GQSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHSCBCSCC-CHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHSCSSSCC
T ss_pred HhcCCCCCCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHHhCCCC
Confidence 88876654333 6899999999999999999999999888876 3456889999999999987643
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-41 Score=292.68 Aligned_cols=216 Identities=25% Similarity=0.432 Sum_probs=192.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..|..++||||||||+|
T Consensus 205 ~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiD 284 (437)
T 4b4t_L 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVD 284 (437)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.... ...++||+|||.++.+|+++.|+|||+..|+++.|+..+|.+||+.
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHhhcccC-CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH
Confidence 999876432 2234567788888887665 5678899999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
++++.+..-+ -++..+|..|+||+++||..+|.+|...++++ ....++.+||.++++++.+.
T Consensus 364 ~~~~~~~~~d-~dl~~lA~~t~G~sGADi~~l~~eA~~~air~---~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 364 HTAKVKKTGE-FDFEAAVKMSDGFNGADIRNCATEAGFFAIRD---DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHTSCBCSC-CCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHHHT
T ss_pred HhcCCCCCcc-cCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHhc
Confidence 8887665433 36899999999999999999999999888876 34568899999999887543
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-40 Score=288.37 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=189.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.++.++.+|..|...+||||||||+|
T Consensus 233 e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCT
T ss_pred HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+..++..++.... ...+++|+|||.++.||+++.|+|||+..|+++.|+..+|.+||+.
T Consensus 313 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 313 AVGGARFDDGAGGDNEVQRTMLELITQLDGFDP-RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp TTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH
T ss_pred cccccccCcCCCccHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH
Confidence 999876443 1224566677777776655 6789999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
++++.+..-+. +++.+|..|+||+++||.++|++|...++++ ....++.+||.++++++.
T Consensus 392 ~l~~~~l~~dv-dl~~LA~~T~GfSGADI~~l~~eAa~~Air~---~~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 392 HSKSMSVERGI-RWELISRLCPNSTGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHTTSCBCSSC-CHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHH
T ss_pred HhcCCCCCCCC-CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---CCCccCHHHHHHHHHHHh
Confidence 88876654333 6889999999999999999999999888876 344678899999988764
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-40 Score=285.67 Aligned_cols=214 Identities=25% Similarity=0.427 Sum_probs=191.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|+.+++++++++|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|..|+.++|||+||||+|
T Consensus 196 ~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp HHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred HHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc-CCCHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP-VPSRDQRAAILH 156 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~-~p~~~~r~~i~~ 156 (305)
.++..+... ....+.+..++..++.+.. ..++++|+|||.++.+|+++.|+|||+..|++| .|+..+|..||+
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHH
T ss_pred hhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHH
Confidence 999876332 2345778889999998776 567899999999999999999999999999996 899999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
.++++.+..-+ .+++.+|..|+||+++||.++|++|...++++ +...++.+||.+|+....
T Consensus 355 ~~~~~~~l~~~-~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 355 TIASKMSLAPE-ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHSSCBCTT-CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHS
T ss_pred HHhcCCCCCcc-cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHhh
Confidence 88887664432 36899999999999999999999999888876 345688999999987643
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.8e-37 Score=288.90 Aligned_cols=197 Identities=29% Similarity=0.532 Sum_probs=152.8
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
+.|..+++.++.++|||||||||||++++++|++++.+++.++++++.+++.|+.++.++.+|+.|+..+||||||||+|
T Consensus 501 ~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 501 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp GGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred HHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.++..+... ....+.+++|+.+++.+.. ...+++|++||.++.||+++.|+|||+..++++.|+..+|.+||+.
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp GCC--------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred HHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 999876432 2345788999999998876 5779999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhh
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVET 201 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~ 201 (305)
++++.+..-+. ++..+|..|+|||++||..+|++|...++++.
T Consensus 660 ~l~~~~~~~~~-dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 660 NLRKSPVAKDV-DLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp TSSCC--CCC-----------------CHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCC-CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88776655443 68999999999999999999999999888763
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.1e-34 Score=257.71 Aligned_cols=241 Identities=34% Similarity=0.570 Sum_probs=197.0
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..|+.++..++.++||+||||||||+++++++++++.+++.++|+++.+.+.++.+..++.+|+.+....|++|||||+|
T Consensus 228 ~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId 307 (489)
T 3hu3_A 228 ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 307 (489)
T ss_dssp HHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.+.+.+... +...+....|+..++.... ...+++|++||.++.++++++++|||+..+.++.|+..+|.+|++.+++
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~-~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp HHCBCTTSCCCHHHHHHHHHHHHHHHHSCT-TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred hhccccccccchHHHHHHHHHHHHhhcccc-CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 998876432 4455677788888886654 5678999999999999999999999999999999999999999998877
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCC--------------CccccHHHHHHHhhhcCCchhh
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGT--------------GQVLSYDGVMRALDHVKPSAMR 226 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~ 226 (305)
..+...+ .++..++..|.||+++||..++..+...++++.... ...++.+||..+++.++|+..+
T Consensus 387 ~~~l~~~-~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~r 465 (489)
T 3hu3_A 387 NMKLADD-VDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (489)
T ss_dssp TSCBCTT-CCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHH
T ss_pred cCCCcch-hhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhh
Confidence 6554433 368889999999999999999999998887653211 1247889999999999999999
Q ss_pred hhhccCCCCCcccccchHH
Q psy5649 227 QVLVEVPNVKWSDIGGQDE 245 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~ 245 (305)
.+..+.|.+.|+||||+.+
T Consensus 466 e~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 466 ETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp GGGC---------------
T ss_pred cccccCCCCCHHHcCCCcc
Confidence 9999999999999999875
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=227.31 Aligned_cols=222 Identities=24% Similarity=0.407 Sum_probs=179.3
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
.+|+++++..+.+++|+||||||||||++++|++++..++.+++.++...+.++.+..+..+|+.+....|+++++||+|
T Consensus 34 ~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid 113 (274)
T 2x8a_A 34 DQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113 (274)
T ss_dssp HHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCT
T ss_pred HHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhh
Confidence 46788899999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred cccCCCCCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 83 VLCTGRNRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 83 ~l~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
.++..+... ....+....++..++.... +..++++++||.++.+|+++.|+|||+..++++.|+..+|.+|++.+++
T Consensus 114 ~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 114 ALCPRRSDRETGASVRVVNQLLTEMDGLEA-RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TTCC---------CTTHHHHHHHHHHTCCS-TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred hhhcccCCCcchHHHHHHHHHHHhhhcccc-cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 987654321 1112445666777765543 6778899999999999999999999999999999999999999998775
Q ss_pred cCC-CCC-CHHhHHHHHHH--cCCCcHHhHHHHHHHHHHHHhhhhc--------CCCccccHHHHHHHhhhcCCchh
Q psy5649 161 KVP-HSL-STDQIQQVAFI--THGFVGGDLATLLSNATSALLVETE--------GTGQVLSYDGVMRALDHVKPSAM 225 (305)
Q Consensus 161 ~~~-~~l-s~~~~~~la~~--t~g~~~~di~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~ 225 (305)
... ..+ ..-++..++.. |+||+++||..++++|...++++.. .....++.+||.+++.+++|+..
T Consensus 193 ~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 193 NGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp TTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred cccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 321 112 23367788876 4599999999999999988775421 12336889999999999998743
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=229.21 Aligned_cols=189 Identities=26% Similarity=0.469 Sum_probs=169.9
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc-CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM-KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
..++.++||+||||||||++++++|+++ +.+++.++++++.+.+.+..+..++.+|+.+...+|+||||||+|.+++.+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~ 121 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCS
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccc
Confidence 4667899999999999999999999999 899999999999999999999999999999999999999999999998766
Q ss_pred CCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 89 NRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 89 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
... ....+....++..++........+++|++||.++.+++++++ ||+..+.++.|+..+|..|++.++...+..+
T Consensus 122 ~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l 199 (322)
T 1xwi_A 122 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL 199 (322)
T ss_dssp SSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC
T ss_pred ccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC
Confidence 543 344567777888888765446789999999999999999999 9999999999999999999999898888788
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
+..+++.++..|+||+++||..++++|...++++
T Consensus 200 ~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 200 TEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp CHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998877754
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.7e-31 Score=227.54 Aligned_cols=214 Identities=24% Similarity=0.459 Sum_probs=184.7
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
+..++.++||+||||||||++++++|++++.+++.++++++.+.+.+..+..++.+|..+....|+||+|||+|.+...+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 126 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 89 NRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 89 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
... ....+....++..++........+++|++||.++.+++++++ ||+..+.++.|+..+|.+|++.++...+..+
T Consensus 127 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~ 204 (322)
T 3eie_A 127 GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVL 204 (322)
T ss_dssp -----CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCC
T ss_pred CCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCC
Confidence 332 234566777888888776556789999999999999999999 9999999999999999999999998888888
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCC----------------------------------------Cc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGT----------------------------------------GQ 206 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~----------------------------------------~~ 206 (305)
+..+++.++..|+||+++||..+++.|....+++.... ..
T Consensus 205 ~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
T 3eie_A 205 TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEP 284 (322)
T ss_dssp CHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCC
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCC
Confidence 89999999999999999999999999987776542110 13
Q ss_pred cccHHHHHHHhhhcCCch
Q psy5649 207 VLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 207 ~~~~~~~~~~l~~~~~~~ 224 (305)
.++.+||.++++..+|+.
T Consensus 285 ~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 285 DLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp CCCHHHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHhcCCCC
Confidence 478888998888888763
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=1.2e-31 Score=227.40 Aligned_cols=219 Identities=28% Similarity=0.479 Sum_probs=181.4
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..+.++++.++.+++|+||||||||++++++|++++.+++.++++++.+.+.+..+..++.+|+.+....|++++|||+|
T Consensus 39 ~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid 118 (301)
T 3cf0_A 39 DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELD 118 (301)
T ss_dssp HHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChH
Confidence 35677889999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred cccCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+...+.. .....+....++..++.... ...+++|++||.++.+++++.++|||+..++++.|+..+|.+|++.
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~ 197 (301)
T 3cf0_A 119 SIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197 (301)
T ss_dssp HHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred HHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHH
Confidence 98754321 11223456677777776544 5678999999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc----------------------CCCccccHHHHHH
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETE----------------------GTGQVLSYDGVMR 215 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~ 215 (305)
++++.+... +.++..++..|+||+++||..++.+|...+..+.. .....++.+||.+
T Consensus 198 ~l~~~~~~~-~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 276 (301)
T 3cf0_A 198 NLRKSPVAK-DVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEE 276 (301)
T ss_dssp HHTTSCBCS-SCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHH
T ss_pred HHccCCCCc-cchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHH
Confidence 887765432 23577889899999999999999999887764321 0113567788888
Q ss_pred HhhhcCCc
Q psy5649 216 ALDHVKPS 223 (305)
Q Consensus 216 ~l~~~~~~ 223 (305)
+++..+++
T Consensus 277 al~~~~~s 284 (301)
T 3cf0_A 277 AMRFARRS 284 (301)
T ss_dssp HHTTCCCS
T ss_pred HHHHcCCC
Confidence 88888775
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.98 E-value=5.8e-31 Score=227.89 Aligned_cols=190 Identities=26% Similarity=0.472 Sum_probs=163.0
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
+..++.++||+||||||||++|+++|++++.+++.++++++.+.+.+..+..++.+|..+....|+||||||+|.+...+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 159 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccC
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 89 NRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 89 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
... ....+....++..++........+++|++||.++.+++++.+ ||+..+.++.|+..+|..|++.++...+..+
T Consensus 160 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~ 237 (355)
T 2qp9_X 160 GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL 237 (355)
T ss_dssp ----CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC
T ss_pred CCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC
Confidence 332 334566677888887765546779999999999999999999 9999999999999999999999998877778
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
+..+++.++..|+||+++||..++.+|...++++
T Consensus 238 ~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 238 TKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999888754
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=6.5e-30 Score=226.86 Aligned_cols=214 Identities=28% Similarity=0.421 Sum_probs=180.0
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.|..++...+.+++|+||||||||+++++++++.+.+++.++++++...+.+.....++.+|..+....|+||||||+|.
T Consensus 40 ~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 40 KFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred HHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 46677888889999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred ccCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 84 LCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 84 l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
+...+.. .+...+.+..++..++.+.. ...+++|++||.++.+++++.++|||+..+.++.|+..+|.+|++.+
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 9876532 12334566777777776544 56788999999999999999999999999999999999999999988
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+++.+.. ++.++..++..|+||+++||.+++.++...+..+ +...++.+++..++.+..+
T Consensus 199 ~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~---~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 199 TRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAARE---GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHC-
T ss_pred HHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc---CCCeecHHHHHHHHHHHhc
Confidence 8765533 2224788999999999999999999998877654 3446788888888877643
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=1.1e-29 Score=214.20 Aligned_cols=216 Identities=26% Similarity=0.451 Sum_probs=181.8
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
..++.+++..+.+++|+||||||||++++++|+.++.+++.++++++...+.+..+..+..+|..+....|+||+|||+|
T Consensus 41 ~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid 120 (285)
T 3h4m_A 41 ELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120 (285)
T ss_dssp HHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTH
T ss_pred HHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 83 VLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 83 ~l~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
.+...+... ......+..++..++.... ...+++|++||.++.+++++.+++||+..+.++.|+..+|.+|++.
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 121 AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA-RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp HHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS-SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred HhcccCccccCCccHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHH
Confidence 998765432 1223444445555544333 5678899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
++....... ..++..++..+.||+++||..++..|...+..+ ....++.+++.++++.+.+.
T Consensus 200 ~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~---~~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 200 HTRKMNLAE-DVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE---LRDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHTTSCBCT-TCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCcCCHHHHHHHHHHHHhc
Confidence 877655442 236889999999999999999999998888765 34568889999998877543
No 18
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=3.8e-29 Score=207.67 Aligned_cols=212 Identities=28% Similarity=0.427 Sum_probs=174.2
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
++.++...+.+++|+|||||||||+++++++.++.+++.++++++...+.+..+..++.+|+.+....|++++|||+|.+
T Consensus 37 ~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l 116 (257)
T 1lv7_A 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV 116 (257)
T ss_dssp C-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHH
T ss_pred HHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhh
Confidence 44566777889999999999999999999999999999999999988888888899999999999999999999999998
Q ss_pred cCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
...+... ....+.+..++..++.... ...+++|++||.++.+++++.+++||+..+.++.|+..+|.+|++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 117 GRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 8654321 2233566677777776544 567889999999999999999999999999999999999999999888
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
++.+..- +.+...++..++||+++||..++.++...+..+ ....++.+++.++++...
T Consensus 196 ~~~~l~~-~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 196 RRVPLAP-DIDAAIIARGTPGFSGADLANLVNEAALFAARG---NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TTSCBCT-TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHHT
T ss_pred hcCCCCc-cccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHHh
Confidence 7654332 234778899999999999999999998877654 345688899998887664
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=8.7e-30 Score=226.68 Aligned_cols=189 Identities=26% Similarity=0.472 Sum_probs=158.9
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc-CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM-KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
..++.++||+||||||||++++++|+++ +.+++.++++++.+.+.+..+..++.+|..+....|+||||||+|.+++.+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~ 243 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCS
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCC
Confidence 3567899999999999999999999999 899999999999988888888899999999999999999999999998765
Q ss_pred CCc--hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 89 NRS--DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 89 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
... ....+....++..++........+++|++||.++.+++++++ ||+..+.++.|+..+|..|++.++...+..+
T Consensus 244 ~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l 321 (444)
T 2zan_A 244 SENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSL 321 (444)
T ss_dssp SCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEEC
T ss_pred CCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCC
Confidence 432 344566677777776654445779999999999999999999 9999999999999999999999988877778
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
+..+++.++..|+||+++||..++++|...++++
T Consensus 322 ~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 322 TEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998877754
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=4.5e-29 Score=207.85 Aligned_cols=214 Identities=26% Similarity=0.378 Sum_probs=163.1
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
|..+++..+.+++|+||||||||+++++++++++.+++.++++++...+.+.....++.+|..+....|++|+|||+|.+
T Consensus 31 ~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 31 FLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp -----CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC---
T ss_pred HHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchh
Confidence 45567788999999999999999999999999999999999999988888888999999999999999999999999999
Q ss_pred cCCCCCc------hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 85 CTGRNRS------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 85 ~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
...+... ......+..++..++.... ...+++|++||.++.+++++.++|||+..+.++.|+..+|.+|++.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~ 189 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQH 189 (262)
T ss_dssp ----------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHH
T ss_pred hccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 7655321 1122445556666654433 46788999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHH-hHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 159 LTKVPHSLSTD-QIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 159 l~~~~~~ls~~-~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+...+...+.. ..+.++..+.||+++||..++..+...+..+ ....++.+++..++.+..+
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~---~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 190 LKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE---GHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp HHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------CCBCCHHHHHHHHHH
T ss_pred HHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHhcc
Confidence 88877766654 3578999999999999999999987766543 2335666677777776543
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=8.1e-29 Score=221.08 Aligned_cols=215 Identities=27% Similarity=0.435 Sum_probs=178.3
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.|.++++..+.+++|+||||||||||+++++++++.+++.++++++...+.+.....++.+|+.+....|++++|||+|.
T Consensus 55 ~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~ 134 (499)
T 2dhr_A 55 RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 134 (499)
T ss_dssp GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGG
T ss_pred hhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHH
Confidence 45667778888899999999999999999999999999999999998888888888999999999888999999999999
Q ss_pred ccCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 84 LCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 84 l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
+...+.. .+...+.+..++..++.... +..++++++||.++.+++++.++|||+..+.++.|+..+|.+|++.+
T Consensus 135 l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~ 213 (499)
T 2dhr_A 135 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 213 (499)
T ss_dssp TCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHT
T ss_pred HHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHH
Confidence 8765432 23334566677777765443 56788999999999999999999999999999999999999999877
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
++..+..- +.++..++..|+||+++||..++.++...+.++ ....++.+|+.+++++..+.
T Consensus 214 ~~~~~l~~-dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~---~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 214 ARGKPLAE-DVDLALLAKRTPGFVGADLENLLNEAALLAARE---GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp TSSSCCCC-SSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---CCSSCCSHHHHHHHHHHTTC
T ss_pred HhcCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccCHHHHHHHHHHHhcc
Confidence 65543221 235888999999999999999999998777654 33467788999998877543
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=7.5e-28 Score=199.51 Aligned_cols=209 Identities=27% Similarity=0.448 Sum_probs=169.1
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.++++++..+.+++|+|||||||||+++++++.++..++.+++.++...+.+.....+..+|+.+....|+++++||+|.
T Consensus 40 ~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 40 RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119 (254)
T ss_dssp HHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred HHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 46677788888899999999999999999999999999999998887777777788899999999888899999999998
Q ss_pred ccCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 84 LCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 84 l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
+...+.. .....+.+..++..++.... +..++++++++.++.+++++.+++||+..++++.|+..+|.+|++.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 120 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp HHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred hhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 8754432 12233455666666665433 56788999999999999999999999999999999999999999977
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
.+..+.. ++.++..++..|+||+++||..++.++...+..+ ....++.+|+.+++
T Consensus 199 ~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 199 ARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAARE---GRRKITMKDLEEAA 253 (254)
T ss_dssp HTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHT
T ss_pred HcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---cCCCcCHHHHHHHh
Confidence 7654322 2235888999999999999999999998877654 23457778887765
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.4e-28 Score=208.79 Aligned_cols=211 Identities=26% Similarity=0.423 Sum_probs=177.7
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
..+.++||+||+|||||++++++|++++.+++.++++++...+.+..+..++.+|..+....|++|+|||+|.+...+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred c--hhHHHHHHHHHHHHhhhcc-cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 91 S--DQERRLLSCLVTQVDRLHE-LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 91 ~--~~~~~~~~~l~~~~~~~~~-~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
. ....+....++..++.... ....+++|++||.++.+++++.+ ||...+.++.|+..+|.++++.+++.....++
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc
Confidence 2 2334556667777765442 24678999999999999999999 99999999999999999999988887777888
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc---------CCCccccHHHHHHHhhhcCCc
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVETE---------GTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~ 223 (305)
...++.++..+.||+++||..++..+....+++-. .....++.+||..++...+|+
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCC
Confidence 88999999999999999999999999877766432 233567888999999888775
No 24
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.96 E-value=2.4e-28 Score=231.89 Aligned_cols=287 Identities=18% Similarity=0.273 Sum_probs=195.9
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~ 70 (305)
.+.+.+....+++++|+||||||||++++.+++.+ +..++.++++.+. ..+.+..+..++.+|+.+..
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh
Confidence 34555666778899999999999999999999886 6677788777766 35678899999999999998
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC-----CCCCccccCCCCcceEEEccC
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL-----DNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i~~~~ 145 (305)
..+++|||||+|.+++............ ..+....+ ...+.+|++|+.. -.+++++.+ ||. .+.++.
T Consensus 277 ~~~~iL~IDEi~~l~~~~~~~~~~~~~~----~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~ 348 (758)
T 1r6b_X 277 DTNSILFIDEIHTIIGAGAASGGQVDAA----NLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITE 348 (758)
T ss_dssp SSCEEEEETTTTTTTTSCCSSSCHHHHH----HHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCC
T ss_pred cCCeEEEEechHHHhhcCCCCcchHHHH----HHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCC
Confidence 8899999999999986654321122222 22222222 4566778888753 356788888 886 799999
Q ss_pred CCHHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCC-----CcHHhHHHHHHHHHHHHhhhhc-CCCccccHHHHHH
Q psy5649 146 PSRDQRAAILHCLLTK----VPHSLSTDQIQQVAFITHG-----FVGGDLATLLSNATSALLVETE-GTGQVLSYDGVMR 215 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g-----~~~~di~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (305)
|+..++.++++.+... ....++.+.++.++..+.+ +.+..+..++.++......++. .....++.+++.+
T Consensus 349 p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~ 428 (758)
T 1r6b_X 349 PSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES 428 (758)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHH
Confidence 9999999999876654 3566788788888777655 4566777888777554433222 2234577888888
Q ss_pred HhhhcCCchhhhh-------hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCC---C-cceeeecCCCch
Q psy5649 216 ALDHVKPSAMRQV-------LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKP---P-RGILMFGPPGCS 284 (305)
Q Consensus 216 ~l~~~~~~~~~~~-------~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~-~gill~GppG~G 284 (305)
++........... ..........++.|.+.++..+...+. ..+.|+.. | ..++|+||||||
T Consensus 429 ~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~--------~~~~g~~~~~~p~~~~ll~G~~GtG 500 (758)
T 1r6b_X 429 VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIK--------MARAGLGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_dssp HHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHH--------HHHTTCSCTTSCSEEEEEECSTTSS
T ss_pred HHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEEECCCCCc
Confidence 8776532100000 000000112235566666665555443 23345542 2 249999999999
Q ss_pred HHHHHHHHhhhcCceeEEeeC
Q psy5649 285 KTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 285 KT~la~~lA~~~~~~~~~v~~ 305 (305)
||++|+++|..++.+|+.|++
T Consensus 501 KT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 501 KTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp HHHHHHHHHHHHTCEEEEEEG
T ss_pred HHHHHHHHHHHhcCCEEEEec
Confidence 999999999999999998863
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=5.6e-28 Score=204.91 Aligned_cols=212 Identities=26% Similarity=0.438 Sum_probs=177.6
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
.++.+++|+||||||||+++++++++++.+++.++++++.+.+.+..+..++.+|..+....|++|+|||+|.+...+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 131 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS 131 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc
Confidence 35779999999999999999999999999999999999998888999999999999999999999999999999876543
Q ss_pred c--hhHHHHHHHHHHHHhhhccc--CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 91 S--DQERRLLSCLVTQVDRLHEL--QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 91 ~--~~~~~~~~~l~~~~~~~~~~--~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
. .........++..++..... ...+++|++||.++.+++++.+ ||+..+.++.|+..+|..|++.+++..+..+
T Consensus 132 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~ 209 (297)
T 3b9p_A 132 SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPL 209 (297)
T ss_dssp ---CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCS
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC
Confidence 2 12244555666667665432 2568899999999999999998 9999999999999999999998888777778
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc---------CCCccccHHHHHHHhhhcCCch
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETE---------GTGQVLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~ 224 (305)
+...++.++..|.||+++||..+++.+.....++.. .....++.+||..++...+++.
T Consensus 210 ~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 210 DTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 888999999999999999999999998877776532 1234688899999999888763
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=6.5e-27 Score=196.35 Aligned_cols=209 Identities=27% Similarity=0.448 Sum_probs=168.1
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.++++++..+.+++|+|||||||||+++++++.++..++.+++.++.....+.....+..+|+.+....|+++++||+|.
T Consensus 64 ~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 64 RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp HHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred HHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHh
Confidence 46677777788899999999999999999999999999999998887777777788899999999888999999999998
Q ss_pred ccCCCCC-----chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH
Q psy5649 84 LCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL 158 (305)
Q Consensus 84 l~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~ 158 (305)
+...+.. .......+..++..++.... +..++++++++.++.+++++.+++||+..++++.|+..+|.+|++.+
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 144 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp HHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 8654322 12233455556666554332 56788999999999999999999999999999999999999999987
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
++..+.. .+.++..++..++||+++||..++.++...+..+ ....++.+|+.+++
T Consensus 223 ~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~---~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 223 ARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAARE---GRRKITMKDLEEAA 277 (278)
T ss_dssp HTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCCSBCHHHHHHHT
T ss_pred HccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---CCCCcCHHHHHHHh
Confidence 7654322 1225788999999999999999999998776654 23457778887765
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=4.2e-27 Score=206.62 Aligned_cols=211 Identities=26% Similarity=0.431 Sum_probs=169.6
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
.++.++||+||+|||||++++++|.+++.+++.++++++.+.+.+..+..++.+|..+....|+||||||+|.++..+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~ 225 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE 225 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999866543
Q ss_pred c--hhHHHHHHHHHHHHhhhccc-CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 91 S--DQERRLLSCLVTQVDRLHEL-QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 91 ~--~~~~~~~~~l~~~~~~~~~~-~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
. ....+....++..++..... ...+++|++||.++.+++++.+ ||...+.++.|+..+|..|++.++......++
T Consensus 226 ~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 303 (389)
T 3vfd_A 226 GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT 303 (389)
T ss_dssp ---CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC
T ss_pred ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC
Confidence 2 22345566677777665542 4678999999999999999999 99989999999999999999999888888899
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhc---------CCCccccHHHHHHHhhhcCCc
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSNATSALLVETE---------GTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~ 223 (305)
...++.++..+.||+++||..++..+....+++-. .....++.+||..++....++
T Consensus 304 ~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 304 QKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCC
Confidence 99999999999999999999999998877766522 123467788999888887765
No 28
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.95 E-value=5.9e-27 Score=222.02 Aligned_cols=171 Identities=23% Similarity=0.335 Sum_probs=121.2
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccccccchHHHHHHHHHHHHHhCC
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 72 (305)
.+.+.+......+++|+||||||||++++++|..+ +..++.+++ ...+.|+.+..++.+|..+....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~ 267 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAG 267 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcC
Confidence 34445555677889999999999999999999987 777887777 34567888889999999999999
Q ss_pred CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccCCC
Q psy5649 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPVPS 147 (305)
Q Consensus 73 ~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 147 (305)
++||||| ... + ....+...++ .+.+.+|++||..+ .+++++++ || ..+.++.|+
T Consensus 268 ~~iLfiD------~~~---~----~~~~L~~~l~-----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~ 326 (758)
T 3pxi_A 268 NIILFID------AAI---D----ASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPS 326 (758)
T ss_dssp CCEEEEC------C---------------CCCTT-----SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCC
T ss_pred CEEEEEc------Cch---h----HHHHHHHHHh-----cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCC
Confidence 9999999 000 0 1112222222 45678899999888 79999999 99 669999999
Q ss_pred HHHHHHHHHHHHhc----CCCCCCHHhHHHHHHHc-----CCCcHHhHHHHHHHHHHHH
Q psy5649 148 RDQRAAILHCLLTK----VPHSLSTDQIQQVAFIT-----HGFVGGDLATLLSNATSAL 197 (305)
Q Consensus 148 ~~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t-----~g~~~~di~~l~~~~~~~~ 197 (305)
..++..|++.+..+ ....++++.++.++..+ +++.+.+...++..+...+
T Consensus 327 ~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 327 VDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHH
Confidence 99999999976655 45567887777777654 4556777777777765433
No 29
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=1.6e-29 Score=211.35 Aligned_cols=219 Identities=25% Similarity=0.391 Sum_probs=171.2
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
.+.+++...+.+++|+||||||||+++++++++++.+++.++++++...+.+.....++.+|+.+....|++|+|||+|.
T Consensus 35 ~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 35 RYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 114 (268)
T ss_dssp HHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGG
T ss_pred HHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhh
Confidence 45667788888999999999999999999999999999999999888777777667778899999999999999999999
Q ss_pred ccCCCCCc------hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 84 LCTGRNRS------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 84 l~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
+...+... ....+.+..++..++........+++|++||.++.+++++.+++||+..+.++.|+..+|.++++.
T Consensus 115 l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~ 194 (268)
T 2r62_A 115 IGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKV 194 (268)
T ss_dssp TTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHH
T ss_pred hcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHH
Confidence 97654211 011122334444444443334568899999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhh
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMR 226 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 226 (305)
+++..+.. ++.+++.++..+.||+++||..++..+...+..+ ....++.+++..++....++...
T Consensus 195 ~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~---~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 195 HIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRN---NQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---CCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCCcCHHHHHHHHHHHhhcchh
Confidence 87765432 2234677888899999999999999998766532 33467889999999888776443
No 30
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.94 E-value=3.9e-26 Score=218.58 Aligned_cols=181 Identities=22% Similarity=0.304 Sum_probs=118.6
Q ss_pred HhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHhC-C
Q psy5649 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALDH-A 72 (305)
Q Consensus 6 ~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~ 72 (305)
+.+.-..+++++|+||||||||++++.+|+.+ +.+++.++++.+. ..+.++.+..++.+|..+... .
T Consensus 184 ~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~ 263 (854)
T 1qvr_A 184 QILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQG 263 (854)
T ss_dssp HHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCS
T ss_pred HHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCC
Confidence 33344566789999999999999999999987 7899999998886 456788899999999999875 7
Q ss_pred CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC----CCCccccCCCCcceEEEccCCCH
Q psy5649 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD----NVDVSLRTPGRLDQEIELPVPSR 148 (305)
Q Consensus 73 ~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~----~l~~~l~~~~r~~~~i~~~~p~~ 148 (305)
|+||||||+|.+.+..... ........+...+. ...+.+|++||..+ .+++++.+ ||+. +.++.|+.
T Consensus 264 ~~iL~IDEi~~l~~~~~~~-g~~~~~~~L~~~l~-----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~ 334 (854)
T 1qvr_A 264 EVILFIDELHTVVGAGKAE-GAVDAGNMLKPALA-----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTV 334 (854)
T ss_dssp SEEEEECCC--------------------HHHHH-----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCH
T ss_pred CeEEEEecHHHHhccCCcc-chHHHHHHHHHHHh-----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCH
Confidence 8999999999987554321 11122223333333 45566788887654 47888988 8975 99999999
Q ss_pred HHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcC-----CCcHHhHHHHHHHHHH
Q psy5649 149 DQRAAILHCLLTK----VPHSLSTDQIQQVAFITH-----GFVGGDLATLLSNATS 195 (305)
Q Consensus 149 ~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~-----g~~~~di~~l~~~~~~ 195 (305)
.++..|++.++.+ ....++++.+..++..+. .|.+.....++..+..
T Consensus 335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHH
Confidence 9999999866653 355677777777776553 4556666666665543
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=3.5e-29 Score=237.00 Aligned_cols=194 Identities=30% Similarity=0.538 Sum_probs=162.7
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
+.++++.++.+++|+|||||||||+++++|++++.+++.++++++...+.++.+..++.+|+.+....|+|+||||+|.+
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHH
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhh
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc-----hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
+..+... ....+.+..++..++.... ...+++|+|||.++.+++++.++|||+..+.++.|+..+|..|++.++
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred hhhccCCCCCcchhHHHHHHHHHHHHhcccc-cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 8776432 1234566667766665544 567889999999999999999999999999999999999999999877
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
++.+..-+ .++..++..|.||+++||..+++.|...++++
T Consensus 662 ~~~~~~~~-~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 662 RKSPVAKD-VDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp SCC----C-CCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCcc-cCHHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 66544322 25677888899999999999999999888765
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=3.6e-26 Score=192.76 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=131.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHH----HhCCCeEEEEccccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA----LDHAPSLLLLDNLDV 83 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~vl~ide~d~ 83 (305)
.+.+.+.++||+||||||||++++++|++++.+++.++++++.+.+.|..+..++.+|+.+ +...|+||+|||+|.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4677888999999999999999999999999999999999999999999999999999999 577899999999999
Q ss_pred ccCCCCCch----hHHHHHHHHHHHHhhhc----------ccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHH
Q psy5649 84 LCTGRNRSD----QERRLLSCLVTQVDRLH----------ELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRD 149 (305)
Q Consensus 84 l~~~~~~~~----~~~~~~~~l~~~~~~~~----------~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~ 149 (305)
+++...... ........++..++... .....+++|+|||.++.+++++.++|||+..+. .|+..
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~ 188 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHH
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHH
Confidence 987543221 12345566777776322 124578899999999999999999999988887 57999
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHH
Q psy5649 150 QRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLAT 188 (305)
Q Consensus 150 ~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~ 188 (305)
+|.+|++.++... .++ ...++..+.||+++||..
T Consensus 189 ~r~~Il~~~~~~~--~~~---~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD--NVP---AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG--CCC---HHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC--CCC---HHHHHHHhCCCCcccHHH
Confidence 9999999777643 344 445666778899988864
No 33
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-22 Score=173.41 Aligned_cols=83 Identities=35% Similarity=0.756 Sum_probs=76.8
Q ss_pred CchhhhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeE
Q psy5649 222 PSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301 (305)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~ 301 (305)
|........+.|.+.|+||||++++++.+.+.+.||++||+.|.++|+.+|+|+|||||||||||++|+|+|++++.+|+
T Consensus 132 ~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 132 PLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp CCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 33344455677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee
Q psy5649 302 SVK 304 (305)
Q Consensus 302 ~v~ 304 (305)
+|+
T Consensus 212 ~v~ 214 (405)
T 4b4t_J 212 RVS 214 (405)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=3.6e-20 Score=157.68 Aligned_cols=179 Identities=17% Similarity=0.223 Sum_probs=140.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcC-------CeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMK-------VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~-------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
.+.+++|+||||||||++++++|+.+. .+++.++++++.+.+.+.....+..+|..+ .+++|+|||+|.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l 142 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYL 142 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhh
Confidence 345799999999999999999999873 389999999999888888888888888887 4679999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 85 CTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
+..+...+........++..++.. ...+.+|++++... .+++.+++ ||+..++++.|+..++..|++.++
T Consensus 143 ~~~~~~~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 143 YRPDNERDYGQEAIEILLQVMENN---RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CCCC---CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHH
T ss_pred ccCCCcccccHHHHHHHHHHHhcC---CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHH
Confidence 866543333445566677766642 34567777776542 34688888 899999999999999999999999
Q ss_pred hcCCCCCCHHhHHHHHHH-------cCCCcHHhHHHHHHHHHHHHh
Q psy5649 160 TKVPHSLSTDQIQQVAFI-------THGFVGGDLATLLSNATSALL 198 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~-------t~g~~~~di~~l~~~~~~~~~ 198 (305)
......++.+.++.++.. ...-+++++..++..+.....
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~ 263 (309)
T 3syl_A 218 DDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQA 263 (309)
T ss_dssp HHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHH
Confidence 888888899888888765 233358888888888875443
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.5e-21 Score=168.43 Aligned_cols=76 Identities=46% Similarity=0.826 Sum_probs=72.8
Q ss_pred hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
..+.|.++|+||||++++++.+.+.+.||+++++.|.++|+.+|+|+|||||||||||++|+++|++++.+|+.|+
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3456889999999999999999999999999999999999999999999999999999999999999999999986
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.83 E-value=1.6e-19 Score=150.76 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=139.3
Q ss_pred HHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc-ccccchHHHHHHHHHHHHHhCCCeEEEEccccc
Q psy5649 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF-SKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDV 83 (305)
Q Consensus 5 ~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~ 83 (305)
++..+...+.+++|+||+|||||++++++++..+.+++.+++++.. +.........++.+|+.+....+++|+|||+|.
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 3444567888999999999999999999999999999999886533 222234456788899999888899999999999
Q ss_pred ccCCCCCc-hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCc-cccCCCCcceEEEccCCCH-HHHHHHHHHHHh
Q psy5649 84 LCTGRNRS-DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDV-SLRTPGRLDQEIELPVPSR-DQRAAILHCLLT 160 (305)
Q Consensus 84 l~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~-~l~~~~r~~~~i~~~~p~~-~~r~~i~~~~l~ 160 (305)
++...... ......+..+...++........+++|++||.++.+++ .+.+ ||...+.+|.++. .+...++. .
T Consensus 136 l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~---~ 210 (272)
T 1d2n_A 136 LLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALE---L 210 (272)
T ss_dssp HTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHH---H
T ss_pred hhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHH---h
Confidence 87654322 22334455555555544444567889999999887776 4444 8988888876665 33333333 2
Q ss_pred cCCCCCCHHhHHHHHHHcCCC----cHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGF----VGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~----~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
. ..++.+.++.++..+.|| +.+++..++..+.. .......+++...++....
T Consensus 211 ~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~--------~~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 211 L--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ--------MDPEYRVRKFLALLREEGA 266 (272)
T ss_dssp H--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT--------SCGGGHHHHHHHHHHHTSC
T ss_pred c--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh--------hchHHHHHHHHHHHHHcCC
Confidence 2 346788999999999998 45555555444421 1123345566666655443
No 37
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.1e-21 Score=165.86 Aligned_cols=75 Identities=40% Similarity=0.851 Sum_probs=72.4
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.+.+.|+||||++++++.+.+.+.||+++++.|.++|+.+|+|+|||||||||||++|+|+|++++.+|+.|+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence 456889999999999999999999999999999999999999999999999999999999999999999999986
No 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=2.4e-22 Score=179.68 Aligned_cols=174 Identities=16% Similarity=0.219 Sum_probs=117.7
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcC--CeEEEEecccccccccchHHHHHHHHHHHH---HhCCCeEEEEcccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMK--VHTVVIQVADMFSKFYGEAEFRLKAAFDAA---LDHAPSLLLLDNLD 82 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~--~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~vl~ide~d 82 (305)
.+..++.++||+||||||||++++++|++++ .+++.++++++.+.+.++.+. ++..|+.+ ....|++|||||+|
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechh
Confidence 3556678999999999999999999999999 999999999999999999987 99999999 78899999999999
Q ss_pred cccCCCCCchhHH---------------------HHHHHHHHHHhhhc-ccCCeEEEEEEecCCCCCCccccCCCCcce-
Q psy5649 83 VLCTGRNRSDQER---------------------RLLSCLVTQVDRLH-ELQACVVLLAVTTSLDNVDVSLRTPGRLDQ- 139 (305)
Q Consensus 83 ~l~~~~~~~~~~~---------------------~~~~~l~~~~~~~~-~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~- 139 (305)
.++.++....... +....++..++... ...+.++++++||.++.+++++.++|||+.
T Consensus 137 ~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~ 216 (456)
T 2c9o_A 137 ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLE 216 (456)
T ss_dssp EEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCS
T ss_pred hcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcc
Confidence 9998765431100 01112344443221 124456666899999999999999999988
Q ss_pred -EEEccCC--CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 140 -EIELPVP--SRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 140 -~i~~~~p--~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
.+.++.| +..+|.+|++.+. ..+++.++..|+| ++||.+++..
T Consensus 217 ~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 217 AEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp SSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC-----------------
T ss_pred eeEecCCCchhHHHHHHHHHHHH--------HHHHHHHHHhCCC--hhHHHHHHhh
Confidence 4455666 4466777765322 2368888888999 9999988854
No 39
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.1e-21 Score=166.79 Aligned_cols=75 Identities=36% Similarity=0.752 Sum_probs=72.2
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.|..+|+||||++++|+.+.+.+.||+++|+.|.++|+.+|+|+|||||||||||++|+|+|++++.+|+.|+
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 455788999999999999999999999999999999999999999999999999999999999999999999986
No 40
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.8e-21 Score=166.04 Aligned_cols=75 Identities=51% Similarity=0.889 Sum_probs=72.2
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.|.++|+||||++++|+.+.+.+.||+.+++.|.++|+++|+|+|||||||||||++|+++|++++.+|+.|+
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999986
No 41
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.6e-20 Score=164.13 Aligned_cols=75 Identities=45% Similarity=0.902 Sum_probs=72.0
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.|.+.|+||||++++|+.+.+.+.||+.+++.|.++|+.+|+|+|||||||||||++|+++|++++.+|+.|+
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 345778999999999999999999999999999999999999999999999999999999999999999999986
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=1.1e-17 Score=145.80 Aligned_cols=196 Identities=20% Similarity=0.227 Sum_probs=140.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCC--eEEEEeccccccccc--------------------------------
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSKFY-------------------------------- 54 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~--~~~~v~~~~~~~~~~-------------------------------- 54 (305)
+..++.+++|+||||||||++++++++.++. +++.+++..+...+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 3345679999999999999999999999875 677787765332221
Q ss_pred -----------------chHHHHHHHHHHHHHh---------CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh
Q psy5649 55 -----------------GEAEFRLKAAFDAALD---------HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL 108 (305)
Q Consensus 55 -----------------~~~~~~l~~~~~~~~~---------~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~ 108 (305)
+.....++..+..+.. ..|+||+|||+|.+.. .....+...++..
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~---------~~~~~L~~~le~~ 216 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI---------ESFSFLNRALESD 216 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH---------HHHHHHHHHTTCT
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh---------HHHHHHHHHhhCc
Confidence 2223344444444432 1268999999998731 2333444444332
Q ss_pred cccCCeEEEEEEe-----------cCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q psy5649 109 HELQACVVLLAVT-----------TSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFI 177 (305)
Q Consensus 109 ~~~~~~~~~i~~t-----------~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~ 177 (305)
..+++++++. +.+..+++.+++ ||.. +.+++|+..++..+++..+......++.+.++.++..
T Consensus 217 ---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~ 290 (368)
T 3uk6_A 217 ---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRI 290 (368)
T ss_dssp ---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred ---CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3345545443 246778899988 8855 8999999999999999888887888999999999998
Q ss_pred cCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 178 THGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 178 t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
+.+.+++++..++..+...+..+ ....++.+++.+++..+..
T Consensus 291 ~~~G~~r~~~~ll~~a~~~A~~~---~~~~It~~~v~~a~~~~~~ 332 (368)
T 3uk6_A 291 GLETSLRYAIQLITAASLVCRKR---KGTEVQVDDIKRVYSLFLD 332 (368)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHT---TCSSBCHHHHHHHHHHSBC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHhcC
Confidence 88778999999999987766543 4457888899888887543
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.77 E-value=1.4e-18 Score=157.97 Aligned_cols=199 Identities=20% Similarity=0.221 Sum_probs=129.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc---------cccchHHHHHHHHHHHHHhCCCeEEEEcccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS---------KFYGEAEFRLKAAFDAALDHAPSLLLLDNLD 82 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d 82 (305)
++..++|+|||||||||+++++++.++.+++.++++.... .+.+.....+...|..+....| ++||||+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid 185 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEID 185 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhh
Confidence 5778999999999999999999999999999999876543 3445555666677777766666 99999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhhhccc------------CCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHH
Q psy5649 83 VLCTGRNRSDQERRLLSCLVTQVDRLHEL------------QACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
.+...... ...+.++..++..... -..+++|+|||..+.+++++++ || ..++++.|+..+
T Consensus 186 ~l~~~~~~-----~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e 257 (543)
T 3m6a_A 186 KMSSDFRG-----DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIE 257 (543)
T ss_dssp SCC--------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHH
T ss_pred hhhhhhcc-----CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHH
Confidence 98754321 1122334444321110 1567889999999999999999 99 579999999999
Q ss_pred HHHHHHHHHh-----cC-----CCCCCHHhHHHHHHHcCC-CcHHhHHHHH----HHHHHHHhhhhcCCCccccHHHHHH
Q psy5649 151 RAAILHCLLT-----KV-----PHSLSTDQIQQVAFITHG-FVGGDLATLL----SNATSALLVETEGTGQVLSYDGVMR 215 (305)
Q Consensus 151 r~~i~~~~l~-----~~-----~~~ls~~~~~~la~~t~g-~~~~di~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (305)
+..|+..++. .. ...++.+.+..++....+ ...+++++.+ +.+...++.+ ......++.+++.+
T Consensus 258 ~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-~~~~~~It~~~l~~ 336 (543)
T 3m6a_A 258 KLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAE-ERKRITVTEKNLQD 336 (543)
T ss_dssp HHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-CCSCCEECTTTTHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhc-CCcceecCHHHHHH
Confidence 9999987552 11 234677778887764333 4455555444 4443333322 22334577788888
Q ss_pred Hhhhc
Q psy5649 216 ALDHV 220 (305)
Q Consensus 216 ~l~~~ 220 (305)
++...
T Consensus 337 ~Lg~~ 341 (543)
T 3m6a_A 337 FIGKR 341 (543)
T ss_dssp HHCSC
T ss_pred HhCCc
Confidence 77654
No 44
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.76 E-value=4.5e-17 Score=168.05 Aligned_cols=283 Identities=14% Similarity=0.163 Sum_probs=159.2
Q ss_pred CCcceEEEEcCCCCcHHHHH-HHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH---------------hCCCe
Q psy5649 11 KKCNGILIYGVNGTGKTSLI-HSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL---------------DHAPS 74 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~-~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~~ 74 (305)
..+.++||+||||||||+++ +.++...+..+..++++.... ...+...++... ...++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 45679999999999999999 555655577788888765432 233444444331 12347
Q ss_pred EEEEcccccccCCCCCchhHHHHHHHHHHHHhhhccc-------CCeEEEEEEecCCC-----CCCccccCCCCcceEEE
Q psy5649 75 LLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL-------QACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIE 142 (305)
Q Consensus 75 vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~ 142 (305)
|+||||++.-..++.......+.+.+++.. ...... -.++.+|+++|++. .+++++.| || ..+.
T Consensus 1339 VlFiDEinmp~~d~yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~ 1414 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILY 1414 (2695)
T ss_dssp EEEEETTTCSCCCSSSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEE
T ss_pred EEEecccccccccccCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEE
Confidence 999999987433332223333444444321 111110 13578899999984 89999998 88 8899
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHH---hHHHHHHH------------------cCCCcHHhHHHHHHHHHHHHhhhh
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTD---QIQQVAFI------------------THGFVGGDLATLLSNATSALLVET 201 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~---~~~~la~~------------------t~g~~~~di~~l~~~~~~~~~~~~ 201 (305)
++.|+..++..|+..+++.... ...+ ..+.++.+ -.-|+.+|+..+++..........
T Consensus 1415 i~~P~~~~l~~I~~~il~~~l~-~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~ 1493 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAIFK-LVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGP 1493 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHHTT-SSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred eCCCCHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhh
Confidence 9999999999999877654321 1110 11111111 135789999988876543211100
Q ss_pred cC--------------------CCccccHHHHHHHhhhcCCchhh----------hhh-ccCCCCCcccccchHHHHHHH
Q psy5649 202 EG--------------------TGQVLSYDGVMRALDHVKPSAMR----------QVL-VEVPNVKWSDIGGQDEVKLKL 250 (305)
Q Consensus 202 ~~--------------------~~~~~~~~~~~~~l~~~~~~~~~----------~~~-~~~~~~~~~~i~g~~~~~~~l 250 (305)
.. -.+....+.+.+.+.......+. .++ .+.-...+.++. .+++++.+
T Consensus 1494 ~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~-~~~l~~~l 1572 (2695)
T 4akg_A 1494 RQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVN-KTDLVNFI 1572 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECC-HHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecC-HHHHHHHH
Confidence 00 00111122222222221111100 000 011111233443 24455555
Q ss_pred HHHhhcc---------------CCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 251 RQSVEWP---------------LKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 251 ~~~~~~~---------------~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
.+.+... +.|--.+.++-..+...+||+|++||||++|+|..|..+++.++.|++
T Consensus 1573 ~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~ 1642 (2695)
T 4akg_A 1573 EERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKI 1642 (2695)
T ss_dssp HHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCC
T ss_pred HHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEe
Confidence 4444321 112222333323344449999999999999999999999999998864
No 45
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=5e-17 Score=138.13 Aligned_cols=208 Identities=19% Similarity=0.264 Sum_probs=142.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccch-HHHHHHHHHHHH-----HhCCCeEEEEcccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYGE-AEFRLKAAFDAA-----LDHAPSLLLLDNLDVL 84 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~-~~~~l~~~~~~~-----~~~~~~vl~ide~d~l 84 (305)
.+.+++|+||||||||++++++++.++.+++.++++.+.. .+.+. ....++.++..+ ....++||+|||+|.+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 128 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI 128 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence 4678999999999999999999999999999999988765 33332 234566666533 1134789999999999
Q ss_pred cCCCCCc--hhH-HHHHHHHHHHHhhhcc-------cCCeEEEEEEe----cCCCCCCccccCCCCcceEEEccCCCHHH
Q psy5649 85 CTGRNRS--DQE-RRLLSCLVTQVDRLHE-------LQACVVLLAVT----TSLDNVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 85 ~~~~~~~--~~~-~~~~~~l~~~~~~~~~-------~~~~~~~i~~t----~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
....... +.. ......++..++...- ....+++|+++ +.+..+++.+.+ ||+..+.++.|+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~ 206 (310)
T 1ofh_A 129 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAAD 206 (310)
T ss_dssp SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred CccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHH
Confidence 8665322 221 2234556666664210 12356677774 466778888887 999889999999999
Q ss_pred HHHHHHH----H-------HhcCC--CCCCHHhHHHHHHHcC-------CCcHHhHHHHHHHHHHHHhhhh-c--CCCcc
Q psy5649 151 RAAILHC----L-------LTKVP--HSLSTDQIQQVAFITH-------GFVGGDLATLLSNATSALLVET-E--GTGQV 207 (305)
Q Consensus 151 r~~i~~~----~-------l~~~~--~~ls~~~~~~la~~t~-------g~~~~di~~l~~~~~~~~~~~~-~--~~~~~ 207 (305)
+..|++. + +.... ..++++.++.++..+. +.+.+++..++..+......+. . .....
T Consensus 207 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~ 286 (310)
T 1ofh_A 207 FERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVN 286 (310)
T ss_dssp HHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEE
Confidence 9999872 1 11122 3578888888887762 5678888888887764433221 1 11224
Q ss_pred ccHHHHHHHhhhcC
Q psy5649 208 LSYDGVMRALDHVK 221 (305)
Q Consensus 208 ~~~~~~~~~l~~~~ 221 (305)
++.+++.+++....
T Consensus 287 i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 287 IDAAYVADALGEVV 300 (310)
T ss_dssp ECHHHHHHHTCSSS
T ss_pred EeeHHHHHHHHhhh
Confidence 77888888887653
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=3.2e-16 Score=134.90 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=135.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
.+..+++|+||+|||||++++++++.++.+++.+++..+. ....+...+.. ...+++|+|||+|.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~---- 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP---- 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH----
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH----
Confidence 3456799999999999999999999999999999987653 12233333332 34678999999998741
Q ss_pred chhHHHHHHHHHHHHhhhcc---------------cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHH
Q psy5649 91 SDQERRLLSCLVTQVDRLHE---------------LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAIL 155 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~ 155 (305)
.....+...++...- ..+++.+|++||....+++.+++ ||+..+.++.|+..++..++
T Consensus 121 -----~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 121 -----AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp -----HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHH
Confidence 223334444443210 01247899999999999999988 89899999999999999999
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+..+......++.+.++.++..+.| +++++..++..+...+... ....++.+++..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~---~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 194 QKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVN---DEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhh---cCCccCHHHHHHHHHHh
Confidence 9888887778888889999886555 5567777777765444322 23356667777666553
No 47
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=6.4e-17 Score=143.60 Aligned_cols=194 Identities=16% Similarity=0.217 Sum_probs=134.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
++.++|+||+|||||||++++++.+ +..++.+++.++...............|.......+.+|+|||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5789999999999999999999988 78889998876643322222111112233333337889999999987642
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCC---CCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN---VDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKV 162 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~ 162 (305)
. .. ...++..++...+ .+..+++++.+.+.. +++.+.+ ||. ..+.++.|+..+|..+++..+...
T Consensus 210 ~----~~---q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~ 279 (440)
T 2z4s_A 210 T----GV---QTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIE 279 (440)
T ss_dssp H----HH---HHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred h----HH---HHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 1 11 1223334433333 344555555444444 7788887 775 678999999999999999888776
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
+..++.+.++.++..+.| +.+++..++..+...+... ...++.+++.+++....
T Consensus 280 ~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~----~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 280 HGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----GKEVDLKEAILLLKDFI 333 (440)
T ss_dssp TCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS----SSCCCHHHHHHHTSTTT
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHHh
Confidence 777888889999988765 7788888888876655432 12578888888888765
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.72 E-value=1.9e-16 Score=135.55 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=119.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
.+.+++|+||+||||||+++++++.+ +.+++.+++.++.....+.........|.... ..+.+|+|||++.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh
Confidence 45789999999999999999999988 88999999877654433332222222233322 247899999999875321
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 89 NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
... ..+...++...+ .+..+++++++.+. .+++.+.+ ||. ..+++++ +..++..+++..+...+
T Consensus 115 ----~~~---~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~ 183 (324)
T 1l8q_A 115 ----RTQ---IEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 (324)
T ss_dssp ----HHH---HHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred ----HHH---HHHHHHHHHHHH-CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 111 223333333222 33455566665555 57888887 775 6789999 99999999999888888
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHH
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSA 196 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~ 196 (305)
..++.+.++.++..+ -+.+++..++..+...
T Consensus 184 ~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 184 LELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp CCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 889999999999888 4567777777666544
No 49
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.71 E-value=3.4e-16 Score=128.00 Aligned_cols=183 Identities=17% Similarity=0.120 Sum_probs=124.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcC---CeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGR 88 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~ 88 (305)
.+.+++|+||+||||||+++++++.+. ..+..+++.++........ + ....+.+++|||++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALL--------E--GLEQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH--------H--hccCCCEEEEeccccccCCH
Confidence 578899999999999999999998764 6788888877654332111 1 11457899999999874321
Q ss_pred CCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC---CCCccccCCCCcc--eEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 89 NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD---NVDVSLRTPGRLD--QEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
. ....+...++...+.....+++.++..+. .+.+.+.+ |+. ..++++.|+..++.+++...+...+
T Consensus 121 ----~---~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~ 191 (242)
T 3bos_A 121 ----L---WEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRG 191 (242)
T ss_dssp ----H---HHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTT
T ss_pred ----H---HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcC
Confidence 1 12223333333333222224444443343 34456666 664 7899999999999999998888777
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhh
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
..++.+.++.++..+.| +.+++..++..+...+..+. ..++.+++.++++
T Consensus 192 ~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~----~~It~~~v~~~l~ 241 (242)
T 3bos_A 192 LQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ----RKLTIPFVKEMLR 241 (242)
T ss_dssp CCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT----CCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC----CCCcHHHHHHHhh
Confidence 88999899999988765 77788888887776654331 2467777777654
No 50
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.71 E-value=1.6e-18 Score=171.99 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=50.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCC----------HHHHHh------cCCC----------CCcc--eeeecCCCc
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKH----------PEAFAR------LGIK----------PPRG--ILMFGPPGC 283 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~----------~~~~~~------~~~~----------~~~g--ill~GppG~ 283 (305)
.....|++|+|++++|..+.+...||+.+ ++.++. .|.. +|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34588999999999999999999999844 445554 3333 5566 999999999
Q ss_pred hHHHHHHHHhhhcCce-----eEEe
Q psy5649 284 SKTMIAKALATESKLN-----FISV 303 (305)
Q Consensus 284 GKT~la~~lA~~~~~~-----~~~v 303 (305)
|||+||+++|.+...+ ||++
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~ 1118 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDA 1118 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEc
Confidence 9999999999998777 7765
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.71 E-value=3.4e-17 Score=146.57 Aligned_cols=192 Identities=21% Similarity=0.326 Sum_probs=129.3
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEecccccccccchHHHHHHHHHHHHHhCCC
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAP 73 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 73 (305)
+.+.+.-....+++|+||||||||++++++|..+ +.+++.++++ ..+.|..+..++.+|..+....+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~ 268 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGN 268 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCC
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCC
Confidence 3344444667789999999999999999999986 7778888877 56677778889999999999899
Q ss_pred eEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccCCCH
Q psy5649 74 SLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPVPSR 148 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~p~~ 148 (305)
+||||| ... + ....+...+. .+.+.+|++||..+ .+++++++ ||. .+.++.|+.
T Consensus 269 ~iLfiD------~~~---~----a~~~L~~~L~-----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~ 327 (468)
T 3pxg_A 269 IILFID------AAI---D----ASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSV 327 (468)
T ss_dssp CEEEEC------C---------------CCCTT-----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCH
T ss_pred eEEEEe------Cch---h----HHHHHHHhhc-----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCH
Confidence 999999 000 0 1111222222 45678899999877 68999999 996 599999999
Q ss_pred HHHHHHHHHHHhc----CCCCCCHHhHHHHHHHcCCCc-----HHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 149 DQRAAILHCLLTK----VPHSLSTDQIQQVAFITHGFV-----GGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 149 ~~r~~i~~~~l~~----~~~~ls~~~~~~la~~t~g~~-----~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
.++..|++.++.+ ....++++.+..++..+.+|. +.....++..+......+. ...+....++.+.+..
T Consensus 328 e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~--~~~p~~i~~l~~~i~~ 405 (468)
T 3pxg_A 328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS--FTTPPNLKELEQKLDE 405 (468)
T ss_dssp HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT--TSCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHH
Confidence 9999999977665 456788888888887776664 4467777777664433221 2223334455555554
Q ss_pred cC
Q psy5649 220 VK 221 (305)
Q Consensus 220 ~~ 221 (305)
+.
T Consensus 406 l~ 407 (468)
T 3pxg_A 406 VR 407 (468)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 52
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=1.3e-15 Score=130.35 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=132.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~ 91 (305)
.+.+++|+||+|||||+++++++..++.++..++++.+.. ...+...|..+ ...+++|+|||+|.+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~----- 104 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSR----- 104 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCccccc-----
Confidence 4568999999999999999999999999999998876532 12222222221 24678999999997641
Q ss_pred hhHHHHHHHHHHHHhhhcc---------------cCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH
Q psy5649 92 DQERRLLSCLVTQVDRLHE---------------LQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH 156 (305)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~---------------~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~ 156 (305)
.....+...++...- ...++.+|++||....+++.+.+ ||...+.++.|+..++..++.
T Consensus 105 ----~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~ 178 (324)
T 1hqc_A 105 ----QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVM 178 (324)
T ss_dssp ----HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHH
T ss_pred ----chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHH
Confidence 122333444443210 01357789999999999988887 888899999999999999999
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
..+......++.+.++.++..+.|. ++++..++..+...+.. .....++.+++..++...
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a~~---~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 179 RDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRVRDFAQV---AGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHHTTTSTT---TSCSCCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHh
Confidence 8888777889998999999888664 56777777665433321 123345666666665543
No 53
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=1.9e-16 Score=137.63 Aligned_cols=187 Identities=15% Similarity=0.208 Sum_probs=130.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccccc-ccchH-HHHHHHHHHHH----HhCCCeEEEEccccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK-FYGEA-EFRLKAAFDAA----LDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~-~~~~~-~~~l~~~~~~~----~~~~~~vl~ide~d~l~ 85 (305)
++.+++|+||||||||++++++|+.++.+++.++++++... +.|.. ...+..+|..+ ....+++|||||+|.+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~ 129 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS 129 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence 56789999999999999999999999999999999988744 55554 56677777776 44568899999999988
Q ss_pred CCCCCch-----hHHHHHHHHHHHHhhhc----c--------------cCCeEEEEEEecCC----------CC------
Q psy5649 86 TGRNRSD-----QERRLLSCLVTQVDRLH----E--------------LQACVVLLAVTTSL----------DN------ 126 (305)
Q Consensus 86 ~~~~~~~-----~~~~~~~~l~~~~~~~~----~--------------~~~~~~~i~~t~~~----------~~------ 126 (305)
..+.... ........|+..++... + ...++.+|++++.. ..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf 209 (363)
T 3hws_A 130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF 209 (363)
T ss_dssp CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence 7654321 11235666777776210 0 01223344444421 00
Q ss_pred -----------------------------CCccccCCCCcceEEEccCCCHHHHHHHHHH----HHh---------cCCC
Q psy5649 127 -----------------------------VDVSLRTPGRLDQEIELPVPSRDQRAAILHC----LLT---------KVPH 164 (305)
Q Consensus 127 -----------------------------l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~----~l~---------~~~~ 164 (305)
+.+.+.+ |++..+.+++|+..++..|+.. +++ ....
T Consensus 210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l 287 (363)
T 3hws_A 210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDL 287 (363)
T ss_dssp --------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEE
T ss_pred cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceE
Confidence 4556665 9999999999999999998874 221 1123
Q ss_pred CCCHHhHHHHHH--HcCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 165 SLSTDQIQQVAF--ITHGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 165 ~ls~~~~~~la~--~t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
.++.+.++.++. ....+..++|++++.++....+.+
T Consensus 288 ~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 288 EFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp EECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred EECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 467878888885 345667789999988887666543
No 54
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=138.30 Aligned_cols=74 Identities=50% Similarity=0.976 Sum_probs=63.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.+...|+||||++++++.+.+.+.||+.+++.++++++.+++|++|+||||||||+|++++|++++.+++.|+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999875
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.3e-19 Score=165.72 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=61.7
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++...+||+|++|+++.+ ++++.++..+++|||++++|+.....+.+.++++...+.+.++++|+..
T Consensus 214 ~~~~~~~~LSgGe~Qrv~iA---------raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 214 VLKRDIEKLSGGELQRFAIG---------MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp GGGSCTTTCCHHHHHHHHHH---------HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred hhCCChHHCCHHHHHHHHHH---------HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45667889999999999999 9999999999999999999999999999999998877778888998754
No 56
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.6e-15 Score=121.09 Aligned_cols=177 Identities=14% Similarity=0.175 Sum_probs=121.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHH------hCCCeEEEEcc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL------DHAPSLLLLDN 80 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~vl~ide 80 (305)
...+++|+||+|||||++++.+++.+ ...++.++++.... ...+...+.... ...+.+++|||
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe 110 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDE 110 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEET
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeC
Confidence 33459999999999999999999875 45577787755332 112222222222 25678999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHh
Q psy5649 81 LDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLT 160 (305)
Q Consensus 81 ~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~ 160 (305)
+|.+.. .....+...++.. ...+.+|++++....+.+.+.+ |+. .++++.|+..+...++...+.
T Consensus 111 ~~~l~~---------~~~~~l~~~l~~~---~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 111 ADALTA---------DAQAALRRTMEMY---SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp GGGSCH---------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcCH---------HHHHHHHHHHHhc---CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 998742 1223344444432 3456678888888888888887 775 899999999999999998877
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhh
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
..+..++.+.++.++..+.| +++.+..++..+.... ..++.+++.+++.
T Consensus 176 ~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~--------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 176 KEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG--------EVVDADTIYQITA 224 (226)
T ss_dssp HHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--------SCBCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--------ceecHHHHHHHhc
Confidence 66777888888988877765 4444445544443211 4677777777664
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.69 E-value=5.4e-19 Score=165.12 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH--HHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT--SALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
++.+.++|+|++|+++.+ ++++.++. .+++|||++++|+.....+.+.+++++..+.+.++++|+.
T Consensus 197 ~~~~~~LSGGe~QRv~iA---------rAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLA---------TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCBGGGSCHHHHHHHHHH---------HHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCcccCCHHHHHHHHHH---------HHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 455778999999999999 99999987 8899999999999999999999998876677788888864
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.69 E-value=1.4e-15 Score=133.14 Aligned_cols=199 Identities=20% Similarity=0.262 Sum_probs=130.7
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---------CCeEEEEecccccccc----------------cch-HHHHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---------KVHTVVIQVADMFSKF----------------YGE-AEFRLKAA 64 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---------~~~~~~v~~~~~~~~~----------------~~~-~~~~l~~~ 64 (305)
..+.+++|+||+|||||++++.+++.+ +..++.++|....... .+. ....+..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 556789999999999999999999988 8889999987543211 111 22334445
Q ss_pred HHHHHhC-CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC---CCCCccccCCCCcce-
Q psy5649 65 FDAALDH-APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL---DNVDVSLRTPGRLDQ- 139 (305)
Q Consensus 65 ~~~~~~~-~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~---~~l~~~l~~~~r~~~- 139 (305)
++..... .|++|+|||+|.+.... .....+..++........ ...+.+|++++.. +.+++.+.+ ||..
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~ 194 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELGD-RVWVSLVGITNSLGFVENLEPRVKS--SLGEV 194 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC------CEEEEECSCSTTSSSSCHHHHT--TTTSE
T ss_pred HHHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcCC-CceEEEEEEECCCchHhhhCHHHHh--cCCCe
Confidence 5544433 47899999999885432 022333333333322110 3466788888876 677888877 7764
Q ss_pred EEEccCCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcC---CCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHH
Q psy5649 140 EIELPVPSRDQRAAILHCLLTK--VPHSLSTDQIQQVAFITH---GFVGGDLATLLSNATSALLVETEGTGQVLSYDGVM 214 (305)
Q Consensus 140 ~i~~~~p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~---g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (305)
.+.+++++..+...+++..+.. ....++.+.++.++..+. | .++.+..++..+...+..+ +...++.+++.
T Consensus 195 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~---~~~~i~~~~v~ 270 (387)
T 2v1u_A 195 ELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERR---REERVRREHVY 270 (387)
T ss_dssp ECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT---TCSCBCHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc---CCCCcCHHHHH
Confidence 8999999999999999987764 345677777888887776 5 3455566666665444322 33456677777
Q ss_pred HHhhhc
Q psy5649 215 RALDHV 220 (305)
Q Consensus 215 ~~l~~~ 220 (305)
+++...
T Consensus 271 ~a~~~~ 276 (387)
T 2v1u_A 271 SARAEI 276 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 59
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.9e-17 Score=128.78 Aligned_cols=144 Identities=21% Similarity=0.321 Sum_probs=101.5
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHh
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALD 70 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~ 70 (305)
.+.+.+.-..+.+++|+||+|||||++++.+++.+ +.+++.+++..+. ....+.....+..+++.+..
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK 112 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh
Confidence 34444555667889999999999999999999986 6788889887765 34456677778888887654
Q ss_pred -CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEcc
Q psy5649 71 -HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 71 -~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~ 144 (305)
..+++++|||+|.+....... ........+...++ ...+.+|++++... .+++.+.+ ||. .+.++
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~-~~~~~~~~l~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~ 183 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKAD-GAMDAGNMLKPALA-----RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVA 183 (195)
T ss_dssp STTTEEEEEETGGGGTT-------CCCCHHHHHHHHH-----TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECC
T ss_pred cCCCeEEEEeCHHHHhccCccc-chHHHHHHHHHhhc-----cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecC
Confidence 558899999999987543211 00011122222222 34566777887765 78899988 886 69999
Q ss_pred CCCHHHHHHHH
Q psy5649 145 VPSRDQRAAIL 155 (305)
Q Consensus 145 ~p~~~~r~~i~ 155 (305)
.|+..++.+|+
T Consensus 184 ~p~~~~~~~il 194 (195)
T 1jbk_A 184 EPSVEDTIAIL 194 (195)
T ss_dssp CCCHHHHHTTC
T ss_pred CCCHHHHHHHh
Confidence 99999998764
No 60
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.69 E-value=1.1e-15 Score=135.49 Aligned_cols=181 Identities=15% Similarity=0.220 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccccccCCCC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL----DHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~vl~ide~d~l~~~~~ 89 (305)
.+++|+|||||||||+++++++.++.+++.+++... ....++.++..+. ...+++|||||+|.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~- 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ- 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-
Confidence 579999999999999999999999999999987543 1233455555444 3568999999999874321
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCeEEEEEEec--CCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhc------
Q psy5649 90 RSDQERRLLSCLVTQVDRLHELQACVVLLAVTT--SLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTK------ 161 (305)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~--~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~------ 161 (305)
...|+..++ ...+.+|++|+ ....+++++.+ |+ ..+.++.|+..+...+++..+..
T Consensus 123 --------q~~LL~~le-----~~~v~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~ 186 (447)
T 3pvs_A 123 --------QDAFLPHIE-----DGTITFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG 186 (447)
T ss_dssp ----------CCHHHHH-----TTSCEEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSST
T ss_pred --------HHHHHHHHh-----cCceEEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 123445555 24456666663 34578889988 76 47889999999999999988876
Q ss_pred -CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 162 -VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 162 -~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
....++.+.++.++..+.| +.+++..++..+......+ ......++.+++.+++...
T Consensus 187 ~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~-~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 187 GQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVD-DSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp TSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBC-TTSCEECCHHHHHHHHTCC
T ss_pred cccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccc-cCCCCccCHHHHHHHHhhh
Confidence 3456888889999988665 4445555555554433211 0123456777777776654
No 61
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.6e-15 Score=126.36 Aligned_cols=143 Identities=11% Similarity=0.115 Sum_probs=102.3
Q ss_pred HhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccccc----------------ccchHHH
Q psy5649 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMFSK----------------FYGEAEF 59 (305)
Q Consensus 6 ~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~~~----------------~~~~~~~ 59 (305)
..+.-..+.+++|+||||||||++++.+++++ ...++.++|..+... ..+....
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~ 117 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLE 117 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHH
Confidence 33445678899999999999999999999988 457888998665322 1233456
Q ss_pred HHHHHHHHH--HhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCc----cccC
Q psy5649 60 RLKAAFDAA--LDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDV----SLRT 133 (305)
Q Consensus 60 ~l~~~~~~~--~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~----~l~~ 133 (305)
.+...|+.. ....++|++|||+|.+. . +..+..++.+.. .....+.+|+++|..+..+. ++++
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-------q~~L~~l~~~~~---~~~s~~~vI~i~n~~d~~~~~L~~~v~S 186 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLL-S-------EKILQYFEKWIS---SKNSKLSIICVGGHNVTIREQINIMPSL 186 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSC-C-------THHHHHHHHHHH---CSSCCEEEEEECCSSCCCHHHHHTCHHH
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhh-c-------chHHHHHHhccc---ccCCcEEEEEEecCcccchhhcchhhhc
Confidence 778888875 35668899999999987 1 123333443322 22567888999988765433 3344
Q ss_pred CCCcc-eEEEccCCCHHHHHHHHHHHHhc
Q psy5649 134 PGRLD-QEIELPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 134 ~~r~~-~~i~~~~p~~~~r~~i~~~~l~~ 161 (305)
|+. ..+.|++++..+..+|++..++.
T Consensus 187 --R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 187 --KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp --HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred --cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 675 67999999999999999887765
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=4.2e-15 Score=126.38 Aligned_cols=171 Identities=17% Similarity=0.211 Sum_probs=119.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHH-------------HHHHHHHHhCCCeEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRL-------------KAAFDAALDHAPSLL 76 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~~vl 76 (305)
...++|+||||||||++++++++.+ +.+++.++|+.+..... ...+ ..+.........+++
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~---~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl 123 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA---VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVI 123 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH---HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc---HHHhcCCCCccccccccchHHHHHHhCCCeEE
Confidence 3579999999999999999999988 45688999877643211 1111 122233334456899
Q ss_pred EEcccccccCCCCCchhHHHHHHHHHHHHhhhccc--------CCeEEEEEEecC-------------------------
Q psy5649 77 LLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL--------QACVVLLAVTTS------------------------- 123 (305)
Q Consensus 77 ~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~i~~t~~------------------------- 123 (305)
+|||+|.+.+ .....++..++.-... -..+++|+++|.
T Consensus 124 ~lDEi~~l~~---------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~ 194 (311)
T 4fcw_A 124 LFDAIEKAHP---------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKV 194 (311)
T ss_dssp EEETGGGSCH---------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHH
T ss_pred EEeChhhcCH---------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHH
Confidence 9999997631 2334455555532211 135668888888
Q ss_pred -CCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC---------CCCCCHHhHHHHHHHcC--CCcHHhHHHHHH
Q psy5649 124 -LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV---------PHSLSTDQIQQVAFITH--GFVGGDLATLLS 191 (305)
Q Consensus 124 -~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~---------~~~ls~~~~~~la~~t~--g~~~~di~~l~~ 191 (305)
...+++.+.+ ||+..+.+++|+..++..|++.++++. ...++.+.++.++.... ..+.++|..++.
T Consensus 195 ~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~ 272 (311)
T 4fcw_A 195 LQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ 272 (311)
T ss_dssp HHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHH
T ss_pred HHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHH
Confidence 3356677776 999999999999999999998766542 34578888888887665 678899999888
Q ss_pred HHHHHH
Q psy5649 192 NATSAL 197 (305)
Q Consensus 192 ~~~~~~ 197 (305)
++....
T Consensus 273 ~~~~~~ 278 (311)
T 4fcw_A 273 RELETP 278 (311)
T ss_dssp HHTHHH
T ss_pred HHHHHH
Confidence 876543
No 63
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.65 E-value=1.6e-16 Score=134.40 Aligned_cols=79 Identities=51% Similarity=1.097 Sum_probs=74.3
Q ss_pred hhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.+..+.+...|++++|++.+++.+.+.+.||+.+++.|..+++.++++++||||||||||++|+++|++++.+|+.|+
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 3455677889999999999999999999999999999999999999999999999999999999999999999999885
No 64
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=6.4e-17 Score=141.69 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccch-HHHHHHHHHHHHHhCCCeEEEEcccccccCCCC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYGE-AEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRN 89 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~ 89 (305)
++.+++|+|||||||||+++++|+.++.+++.++++.+.. .+.|. .+..++.+|+.+.... .+||++.+....
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~----~~De~d~~~~~~- 123 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLV----RQQEIAKNRARA- 123 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHH----HHHHHHSCC----
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcc----hhhhhhhhhccc-
Confidence 4568999999999999999999999999999999998887 47774 7899999999887654 478887765332
Q ss_pred CchhHHHHHHHHHHHHhhhcccCCeEEEEEE-ecCCCCCCccccCCCCcceEEEccCCCHH-HHHHHH
Q psy5649 90 RSDQERRLLSCLVTQVDRLHELQACVVLLAV-TTSLDNVDVSLRTPGRLDQEIELPVPSRD-QRAAIL 155 (305)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~-t~~~~~l~~~l~~~~r~~~~i~~~~p~~~-~r~~i~ 155 (305)
......+.++.++..++.+... ..+ +++ ||.++.++++++++|||+.+|++++|+.. .|.+|+
T Consensus 124 ~~~~e~rvl~~LL~~~dg~~~~-~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 124 EDVAEERILDALLPPAKNQWGE-VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHhhccccc-ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 2244567888888888876542 222 444 99999999999999999999999999987 677765
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.64 E-value=6.9e-15 Score=120.21 Aligned_cols=175 Identities=20% Similarity=0.235 Sum_probs=123.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCe------------------------EEEEecccccccccchHHHHHHHHHHHHH
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVH------------------------TVVIQVADMFSKFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 69 (305)
..++|+||+|+||||+++.+++.+... +..++... ......+..+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 119 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQ 119 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhh
Confidence 479999999999999999999877432 22222211 122344555555543
Q ss_pred ----hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccC
Q psy5649 70 ----DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 70 ----~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~ 145 (305)
...+.+|+|||+|.+.. .....+...++.. ...+.+|.+++....+.+.+.+ |+ ..++++.
T Consensus 120 ~~~~~~~~~vlviDe~~~l~~---------~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~ 184 (250)
T 1njg_A 120 YAPARGRFKVYLIDEVHMLSR---------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKA 184 (250)
T ss_dssp CSCSSSSSEEEEEETGGGSCH---------HHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCC
T ss_pred hchhcCCceEEEEECcccccH---------HHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCC
Confidence 23578999999998621 2233444555432 3457778888888888888877 54 7899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 146 PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 146 p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
++..+..+++...+......++.+.++.++..+.| +++.+..++..+... ....++.+++.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~-------~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS-------GDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-------TTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-------cCceecHHHHHHHh
Confidence 99999999999888777778888889999999988 788888888776321 11257777777665
No 66
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.64 E-value=1.2e-14 Score=127.22 Aligned_cols=191 Identities=16% Similarity=0.191 Sum_probs=125.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc-----------CCeEEEEeccccc-cc-----------------ccch-HHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM-----------KVHTVVIQVADMF-SK-----------------FYGE-AEFR 60 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l-----------~~~~~~v~~~~~~-~~-----------------~~~~-~~~~ 60 (305)
..+..++|+||+|||||++++.+++.+ +..+++++|.... .. ..+. ....
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 446689999999999999999999987 8899999986543 10 0011 1223
Q ss_pred HHHHHHHHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC---CCCCccccCCCCc
Q psy5649 61 LKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL---DNVDVSLRTPGRL 137 (305)
Q Consensus 61 l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~---~~l~~~l~~~~r~ 137 (305)
+..++..+... +.+|+|||+|.+...... .. ++..+.... ..+.+|++++.. +.+++.+.+ ||
T Consensus 123 ~~~l~~~l~~~-~~vlilDEi~~l~~~~~~-----~~---~l~~l~~~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~ 188 (384)
T 2qby_B 123 IDKIKNGTRNI-RAIIYLDEVDTLVKRRGG-----DI---VLYQLLRSD---ANISVIMISNDINVRDYMEPRVLS--SL 188 (384)
T ss_dssp HHHHHHHHSSS-CEEEEEETTHHHHHSTTS-----HH---HHHHHHTSS---SCEEEEEECSSTTTTTTSCHHHHH--TC
T ss_pred HHHHHHHhccC-CCEEEEECHHHhccCCCC-----ce---eHHHHhcCC---cceEEEEEECCCchHhhhCHHHHh--cC
Confidence 34444444333 349999999988643211 11 022222211 567788888876 677888877 77
Q ss_pred ceEEEccCCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcCCC--cHHhHHHHHHHHHHHHhhhhcCCCccccHHHH
Q psy5649 138 DQEIELPVPSRDQRAAILHCLLTK--VPHSLSTDQIQQVAFITHGF--VGGDLATLLSNATSALLVETEGTGQVLSYDGV 213 (305)
Q Consensus 138 ~~~i~~~~p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~g~--~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~ 213 (305)
...+.+++++..+..+++...+.. ....++.+.++.++..+.+. .++.+..++..+...+. ....++.+++
T Consensus 189 ~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-----~~~~i~~~~v 263 (384)
T 2qby_B 189 GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-----GGGIIRKEHV 263 (384)
T ss_dssp CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----SSSCCCHHHH
T ss_pred CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-----CCCccCHHHH
Confidence 669999999999999999987763 23567777888888776522 23333445555543332 3345677777
Q ss_pred HHHhhhc
Q psy5649 214 MRALDHV 220 (305)
Q Consensus 214 ~~~l~~~ 220 (305)
.+++...
T Consensus 264 ~~~~~~~ 270 (384)
T 2qby_B 264 DKAIVDY 270 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.64 E-value=3e-16 Score=123.06 Aligned_cols=136 Identities=21% Similarity=0.327 Sum_probs=95.1
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----------CCeEEEEeccccc--ccccchHHHHHHHHHHHHHhC
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----------KVHTVVIQVADMF--SKFYGEAEFRLKAAFDAALDH 71 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----------~~~~~~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 71 (305)
+.+.+.-..+.+++|+||+|||||++++.++..+ +.+++.+++..+. ..+.+.....+..++..+...
T Consensus 34 l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (187)
T 2p65_A 34 AIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA 113 (187)
T ss_dssp HHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc
Confidence 3444444567789999999999999999999987 7788888877665 234456667788888887765
Q ss_pred -CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccC
Q psy5649 72 -APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPV 145 (305)
Q Consensus 72 -~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~ 145 (305)
.+.+|+|||+|.+................+...++ ...+.+|++++..+ .+++.+.+ ||. .++++.
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~-----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~ 185 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA-----RGELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQ 185 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH-----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCS
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh-----cCCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCC
Confidence 68899999999987443311111112222333332 35566788888654 68899988 887 488888
Q ss_pred CC
Q psy5649 146 PS 147 (305)
Q Consensus 146 p~ 147 (305)
|+
T Consensus 186 p~ 187 (187)
T 2p65_A 186 PS 187 (187)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 68
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.64 E-value=6.9e-18 Score=152.62 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++...+||+|++|+++.+ ++++.+|..+++|||++.+|+.....+.+.+++++. +.+.++++|+..
T Consensus 131 ~~~~~~~~LSgGe~Qrv~iA---------~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 131 LWNKDANILSGGGLQRLLVA---------ASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp GTTSBGGGCCHHHHHHHHHH---------HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 34455678999999999999 999999999999999999999999999999998875 677788888654
No 69
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.64 E-value=4.6e-14 Score=121.05 Aligned_cols=186 Identities=17% Similarity=0.209 Sum_probs=129.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCch
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSD 92 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~ 92 (305)
..+++|+|||||||||+++++|++++.++...++..... ...+..++.. ...+.|++|||++.+.+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~------ 116 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS--LERGDVLFIDEIHRLNK------ 116 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH------
Confidence 367999999999999999999999998877666544321 1122333322 23567999999998753
Q ss_pred hHHHHHHHHHHHHhhhc---------------ccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHH
Q psy5649 93 QERRLLSCLVTQVDRLH---------------ELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHC 157 (305)
Q Consensus 93 ~~~~~~~~l~~~~~~~~---------------~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~ 157 (305)
... ..+...++... ..-..+.++++++.+..++..+++ ||...+.+++++..+..++++.
T Consensus 117 ~~~---e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 117 AVE---ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKR 191 (334)
T ss_dssp HHH---HHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHH
T ss_pred HHH---HHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHH
Confidence 111 11222222110 001235677788999999999998 8987899999999999999998
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
..+.....++.+....++..+.|. ++++..++..+...+..+ +...++.+++.+++..+.
T Consensus 192 ~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a~~~---~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 192 AASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDMLTVV---KADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHH---TCSSBCHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHc---CCCCcCHHHHHHHHHHhC
Confidence 877777788888999999888775 467777887776555433 223566777777776653
No 70
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.5e-15 Score=136.18 Aligned_cols=165 Identities=18% Similarity=0.279 Sum_probs=108.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHH-------HHHHHHHHH-----HhCCCeEEEEc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEF-------RLKAAFDAA-----LDHAPSLLLLD 79 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~-------~l~~~~~~~-----~~~~~~vl~id 79 (305)
.+..++|+||+|||||++++++|++++.+++++++++........... .+..+|..+ ....++||+||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 457899999999999999999999999999999998765432111000 011222222 23567899999
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 80 NLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 80 e~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
|+|.+..... ..+..+...++. ...++++++++.....+. .++ ++...+.++.|+..++.+++...+
T Consensus 156 Eid~l~~~~~------~~l~~L~~~l~~---~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 156 EVDGMSGGDR------GGVGQLAQFCRK---TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp SGGGCCTTST------THHHHHHHHHHH---CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCccchhhH------HHHHHHHHHHHh---cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHH
Confidence 9999875321 123334444443 134454444333333333 333 445689999999999999998777
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
.+....++.+.++.++..+.| |++.++...
T Consensus 223 ~~~~~~i~~~~l~~la~~s~G----diR~~i~~L 252 (516)
T 1sxj_A 223 IREKFKLDPNVIDRLIQTTRG----DIRQVINLL 252 (516)
T ss_dssp HHHTCCCCTTHHHHHHHHTTT----CHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Confidence 766777888889999988654 444444443
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=2.4e-14 Score=125.19 Aligned_cols=197 Identities=22% Similarity=0.284 Sum_probs=128.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc------CCeEEEEeccccccc----------------ccch-HHHHHHHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM------KVHTVVIQVADMFSK----------------FYGE-AEFRLKAAFDA 67 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l------~~~~~~v~~~~~~~~----------------~~~~-~~~~l~~~~~~ 67 (305)
..+..++|+||+||||||+++.+++.+ +..++.++|...... ..+. ....+..+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~ 122 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKA 122 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999988 888999987543210 0111 23334445555
Q ss_pred HHhCC-CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC---CCCCccccCCCCcc-eEEE
Q psy5649 68 ALDHA-PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL---DNVDVSLRTPGRLD-QEIE 142 (305)
Q Consensus 68 ~~~~~-~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~---~~l~~~l~~~~r~~-~~i~ 142 (305)
..... |.+|+|||++.+....+. ..+..+...++.. ...++.+|++++.. +.+++.+.+ ||. ..+.
T Consensus 123 l~~~~~~~vlilDE~~~l~~~~~~-----~~l~~l~~~~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~ 193 (386)
T 2qby_A 123 VRDYGSQVVIVLDEIDAFVKKYND-----DILYKLSRINSEV--NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEII 193 (386)
T ss_dssp HHTCCSCEEEEEETHHHHHHSSCS-----THHHHHHHHHHSC--CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEE
T ss_pred HhccCCeEEEEEcChhhhhccCcC-----HHHHHHhhchhhc--CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEE
Confidence 54443 899999999988754321 1333444444332 24567778888865 456666666 554 5899
Q ss_pred ccCCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcC---CCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 143 LPVPSRDQRAAILHCLLTK--VPHSLSTDQIQQVAFITH---GFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~---g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
+++++..+..+++...+.. ....++++.++.++..+. |. +..+..++..+...+..+ ....++.+++..++
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~-~r~~~~ll~~a~~~a~~~---~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 194 FPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD-ARRALDLLRVSGEIAERM---KDTKVKEEYVYMAK 269 (386)
T ss_dssp ECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHT---TCSSCCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhc---CCCccCHHHHHHHH
Confidence 9999999999999876653 235678888888887776 54 444455666665444332 23345666666665
Q ss_pred hhc
Q psy5649 218 DHV 220 (305)
Q Consensus 218 ~~~ 220 (305)
...
T Consensus 270 ~~~ 272 (386)
T 2qby_A 270 EEI 272 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1.1e-13 Score=121.26 Aligned_cols=194 Identities=21% Similarity=0.130 Sum_probs=126.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhc----CCeEEEEecccccccc----------------cc-hHHHHHHHHHHHHHh-CC
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHM----KVHTVVIQVADMFSKF----------------YG-EAEFRLKAAFDAALD-HA 72 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l----~~~~~~v~~~~~~~~~----------------~~-~~~~~l~~~~~~~~~-~~ 72 (305)
.++|+||+||||||+++.+++.+ +..+++++|....... .+ .....+..+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999999988 5678889876543100 01 112222222222222 45
Q ss_pred CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhccc-CCeEEEEEEecCC---CCCCccccCCCCcce-EEEccCCC
Q psy5649 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL-QACVVLLAVTTSL---DNVDVSLRTPGRLDQ-EIELPVPS 147 (305)
Q Consensus 73 ~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~i~~t~~~---~~l~~~l~~~~r~~~-~i~~~~p~ 147 (305)
|.+|+|||++.+ .......+...++..... ...+.+|++++.. +.+.+.+.+ ||.. .+.+++++
T Consensus 126 ~~vlilDE~~~l---------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 126 YMFLVLDDAFNL---------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYT 194 (389)
T ss_dssp CEEEEEETGGGS---------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCB
T ss_pred eEEEEEECcccc---------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCC
Confidence 889999999987 122344455555433221 1467778888876 566766666 6654 79999999
Q ss_pred HHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcCCC--------cHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh
Q psy5649 148 RDQRAAILHCLLTK--VPHSLSTDQIQQVAFITHGF--------VGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217 (305)
Q Consensus 148 ~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~g~--------~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (305)
..+..+++...+.. ....++.+.++.++..+.+. .+..+..++..+...+..+ ....++.+++..++
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---~~~~i~~~~v~~~~ 271 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---GRKHIAPEDVRKSS 271 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---TCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---CCCCcCHHHHHHHH
Confidence 99999999877654 23468888999999988422 4555666777665544433 23345667777666
Q ss_pred hhcCC
Q psy5649 218 DHVKP 222 (305)
Q Consensus 218 ~~~~~ 222 (305)
.....
T Consensus 272 ~~~~~ 276 (389)
T 1fnn_A 272 KEVLF 276 (389)
T ss_dssp HHHSC
T ss_pred HHHhh
Confidence 65543
No 73
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.61 E-value=3.6e-14 Score=146.77 Aligned_cols=258 Identities=16% Similarity=0.191 Sum_probs=144.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~ 91 (305)
.+.+.++.||+|||||++++.+|..++.+++.++|++-.. ...+..+|..+... .+++++||++.+-+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~----- 711 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE----- 711 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-----
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh-----
Confidence 3457899999999999999999999999999999987543 34456666665544 47999999987522
Q ss_pred hhHHHHHHHHHHHH-hhhcc-------------cCCeEEEEEEec----CCCCCCccccCCCCcceEEEccCCCHHHHHH
Q psy5649 92 DQERRLLSCLVTQV-DRLHE-------------LQACVVLLAVTT----SLDNVDVSLRTPGRLDQEIELPVPSRDQRAA 153 (305)
Q Consensus 92 ~~~~~~~~~l~~~~-~~~~~-------------~~~~~~~i~~t~----~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 153 (305)
...+.++..+..+ ..+.+ ......+++|.| ...+++.++++ || ..+.+..|+.....+
T Consensus 712 -evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~e 787 (2695)
T 4akg_A 712 -KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAE 787 (2695)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHH
Confidence 1122222222211 11111 123455788888 35678899988 77 689999999998888
Q ss_pred HHHHHHhcCCC--CCCHH---hHHHHHHHc-----CCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 154 ILHCLLTKVPH--SLSTD---QIQQVAFIT-----HGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 154 i~~~~l~~~~~--~ls~~---~~~~la~~t-----~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
|.-. ...... .++.. -.+.+.... ..|..+.++.++..+..+....+ ....-+.+++....-.
T Consensus 788 i~l~-s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~------~e~~~l~~al~~~~lp 860 (2695)
T 4akg_A 788 MILQ-IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFG------EGEKTVVESLKRVILP 860 (2695)
T ss_dssp HHHH-HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSC------SSHHHHHHHHHHHTGG
T ss_pred HHHH-hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCC------cHHHHHHHHHHHhccc
Confidence 7531 111110 01110 011111122 23567788887776654433221 1122344444443211
Q ss_pred --------hhhhhhcc-CCCCCcccccchHHHHHHHHHHhhc-cCC--------CHHHHHhcCCCCCcceeeecCCCchH
Q psy5649 224 --------AMRQVLVE-VPNVKWSDIGGQDEVKLKLRQSVEW-PLK--------HPEAFARLGIKPPRGILMFGPPGCSK 285 (305)
Q Consensus 224 --------~~~~~~~~-~~~~~~~~i~g~~~~~~~l~~~~~~-~~~--------~~~~~~~~~~~~~~gill~GppG~GK 285 (305)
.+..++.+ .|..... .+.......+.+.+.. .+. -.+++... ...+|++|+|||||||
T Consensus 861 k~~~~D~~lf~~li~dlFp~~~~~--~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~--~~r~gvmlvGptgsGK 936 (2695)
T 4akg_A 861 SLGDTDELVFKDELSKIFDSAGTP--LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQ--KTQQALILVGKAGCGK 936 (2695)
T ss_dssp GCCHHHHHHHHHHHHHHCCCCSCC--SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--HHCSEEEEECSTTSSH
T ss_pred cCchhhHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH--HhcceEEEECCCCCCH
Confidence 00111100 0111111 2333334333333221 111 11222221 2357999999999999
Q ss_pred HHHHHHHhhhc
Q psy5649 286 TMIAKALATES 296 (305)
Q Consensus 286 T~la~~lA~~~ 296 (305)
|++.++||+.+
T Consensus 937 Tt~~~~La~al 947 (2695)
T 4akg_A 937 TATWKTVIDAM 947 (2695)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999764
No 74
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.61 E-value=8.4e-19 Score=145.42 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=63.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC-CchhhhhhccCCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK-PSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 236 (305)
+.++.+.++|+|++|+++.+ ++++.+|..+++|||++++|+.....+.+.+.++. ..+.+.++++|+...
T Consensus 136 ~~~~~~~~LSgGqkQRv~iA---------raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 136 LKDKPTHCLSFGQKKRVAIA---------GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206 (275)
T ss_dssp GTTSBGGGSCHHHHHHHHHH---------HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 34556778999999999999 99999999999999999999999999999999886 446778889998765
Q ss_pred cccc
Q psy5649 237 WSDI 240 (305)
Q Consensus 237 ~~~i 240 (305)
+..+
T Consensus 207 ~~~~ 210 (275)
T 3gfo_A 207 VPLY 210 (275)
T ss_dssp GGGG
T ss_pred HHHh
Confidence 5443
No 75
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.61 E-value=1.4e-17 Score=152.52 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=60.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++.+.+||+|++|+++.+ ++++.++..+++|||++++|......+.+.++++...+.+.++++|+..
T Consensus 221 ~~~~~~~~LSGGekQRvaIA---------raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 221 VLDRELHQLSGGELQRVAIA---------AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp GGGSBGGGCCHHHHHHHHHH---------HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred hhCCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 45666788999999999999 9999999999999999999999999999999988655677788888644
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.60 E-value=1.9e-17 Score=150.18 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..++...++|+|++|+++.+ ++++.+|..+++|||++++|+...+.+.+.++++...+.+.++++|+..
T Consensus 151 ~~~~~~~~LSgGekQRv~iA---------raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 151 VLEREIQHLSGGELQRVAIA---------AALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp TTTSBGGGCCHHHHHHHHHH---------HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred hhhCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34555678999999999999 9999999999999999999999999999999888655667788888644
No 77
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.59 E-value=7.7e-16 Score=131.28 Aligned_cols=75 Identities=47% Similarity=0.837 Sum_probs=68.3
Q ss_pred hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc-CceeEEee
Q psy5649 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES-KLNFISVK 304 (305)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~-~~~~~~v~ 304 (305)
+.+.+...|+||+|++++++.+.+.+.||+++++.|.. +..+++|+|||||||||||++|+++|+++ +.+|+.|+
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 45668899999999999999999999999999998874 36778999999999999999999999999 89999886
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.59 E-value=2.7e-17 Score=156.04 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=57.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+++...+||+|++|+++.+ ++++.++..+++|||++++|....+.+.+.+.. .+.+.++++|+..
T Consensus 541 ~~~~~~~~LSGGqkQRvaLA---------rAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~ 606 (986)
T 2iw3_A 541 MIAMPISALSGGWKMKLALA---------RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV 606 (986)
T ss_dssp HHHSBGGGCCHHHHHHHHHH---------HHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH
T ss_pred hhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH
Confidence 45667789999999999999 999999999999999999999999999999988 3566777888643
No 79
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=4.4e-14 Score=120.80 Aligned_cols=152 Identities=11% Similarity=0.149 Sum_probs=108.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhC-----CCeEEEEcccccccC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDH-----APSLLLLDNLDVLCT 86 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~vl~ide~d~l~~ 86 (305)
.+..++++||+|||||++++++++.++.+++++++++.. ...++..+...... .+.+++|||+|.+..
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~ 119 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL 119 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc
Confidence 345678889999999999999999999999999986632 33444444443332 568999999998741
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHH-------H
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCL-------L 159 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~-------l 159 (305)
......+...++.. ...+.+|+++|....+++.+.+ |+ ..++++.|+..++..+++.+ +
T Consensus 120 --------~~~~~~L~~~le~~---~~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~ 185 (324)
T 3u61_B 120 --------AESQRHLRSFMEAY---SSNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEIC 185 (324)
T ss_dssp --------HHHHHHHHHHHHHH---GGGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHhC---CCCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11233445555433 2446678899999999999998 77 57999999999876665433 3
Q ss_pred hcCCCCCCH-HhHHHHHHHcCCCcHH
Q psy5649 160 TKVPHSLST-DQIQQVAFITHGFVGG 184 (305)
Q Consensus 160 ~~~~~~ls~-~~~~~la~~t~g~~~~ 184 (305)
......++. +.++.++..+.|-...
T Consensus 186 ~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 186 KHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 344566766 7888888886654443
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.58 E-value=1.8e-13 Score=117.28 Aligned_cols=189 Identities=15% Similarity=0.195 Sum_probs=119.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccc------ccccccchHHHHHHHHHHHHHhCC---CeEEEEccccc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD------MFSKFYGEAEFRLKAAFDAALDHA---PSLLLLDNLDV 83 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~------~~~~~~~~~~~~l~~~~~~~~~~~---~~vl~ide~d~ 83 (305)
+.+++|+||||||||++++++++.++.++..++++. +.+...-... ...| ..... .++++|||+|.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNF--EVKKGPVFSNFILADEVNR 120 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEE--EEEECTTCSSEEEEETGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCce--EeccCcccccEEEEEcccc
Confidence 568999999999999999999999999999988742 1111000000 0000 00111 36999999997
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhc--------ccCCeEEEEEEecCCC-----CCCccccCCCCcceEEEccCCCHHH
Q psy5649 84 LCTGRNRSDQERRLLSCLVTQVDRLH--------ELQACVVLLAVTTSLD-----NVDVSLRTPGRLDQEIELPVPSRDQ 150 (305)
Q Consensus 84 l~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~i~~t~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~ 150 (305)
+.+ .....+...++.-. .....+++++|+|..+ .+++++.+ ||...+.++.|+..+
T Consensus 121 ~~~---------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~ 189 (331)
T 2r44_A 121 SPA---------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKES 189 (331)
T ss_dssp SCH---------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHH
T ss_pred CCH---------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHH
Confidence 521 22334444444311 1134567778887543 37888888 998889999999999
Q ss_pred HHHHHHHHHhcC----------------------CCCCCHHhHHHHHHHc-------------------CCCcHHhHHHH
Q psy5649 151 RAAILHCLLTKV----------------------PHSLSTDQIQQVAFIT-------------------HGFVGGDLATL 189 (305)
Q Consensus 151 r~~i~~~~l~~~----------------------~~~ls~~~~~~la~~t-------------------~g~~~~di~~l 189 (305)
+.+|++...... ...++.+.++.++... .|.+++.+..+
T Consensus 190 ~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~l 269 (331)
T 2r44_A 190 ELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINL 269 (331)
T ss_dssp HHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHH
T ss_pred HHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHH
Confidence 999998776542 2335555555554321 14467777777
Q ss_pred HHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 190 LSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
++.+...+..+ +.+.++.+|+.+++...
T Consensus 270 l~~a~a~A~l~---g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 270 NRVAKAMAFFN---NRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHT---TCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCCCHHHHHHHHHHH
Confidence 77666554432 33456777777776654
No 81
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=9.3e-14 Score=120.09 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=120.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcC------CeEEEEecccccccccchHHHHHHHHHHHH------------H-hCCCe
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMK------VHTVVIQVADMFSKFYGEAEFRLKAAFDAA------------L-DHAPS 74 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~------------~-~~~~~ 74 (305)
.+++|+|||||||||+++++++.+. ..+..+++++..+ .+.....+.. |... . ...+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG--ISIVREKVKN-FARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC--HHHHTTHHHH-HHHSCCCCCCTTHHHHSCCCSCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc--hHHHHHHHHH-HhhhcccccchhhcccCCCCCce
Confidence 4599999999999999999998864 3577787766421 1111111111 1111 0 12456
Q ss_pred EEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHH
Q psy5649 75 LLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAI 154 (305)
Q Consensus 75 vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i 154 (305)
+++|||+|.+.. .....+...++.. .....+|.+++.+..+.+.+++ |+. .+.++.|+..+...+
T Consensus 136 vliiDE~~~l~~---------~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~ 200 (353)
T 1sxj_D 136 IIILDEADSMTA---------DAQSALRRTMETY---SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDR 200 (353)
T ss_dssp EEEETTGGGSCH---------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHH
T ss_pred EEEEECCCccCH---------HHHHHHHHHHHhc---CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHH
Confidence 999999998742 1223444555443 2334456677888889999888 774 889999999999999
Q ss_pred HHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhc
Q psy5649 155 LHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 155 ~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (305)
+...+......++.+.++.++..+.|. .+.+..++..+....-++ .....++.+++.+++...
T Consensus 201 l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~~~~~--~~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 201 LRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSASKGAQYL--GDGKNITSTQVEELAGVV 263 (353)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHHHHHH--CSCCCCCHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCC--ccCccccHHHHHHHhCCC
Confidence 998887777789999999999888764 333444444443332111 011145666776666543
No 82
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.58 E-value=8.2e-19 Score=149.91 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=61.4
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++++.+||+|++|+++.+ ++++.+|..+++|||++++|+.+...+.+.+++++.. +.+.++++|+..
T Consensus 156 ~~~~~~~~LSGGqkQRVaIA---------rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 156 KHDSYPSNLSGGQKQRVAIA---------RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp GTTCCTTTSCHHHHHHHHHH---------HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 45677889999999999999 9999999999999999999999999999999988654 678888998754
No 83
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.58 E-value=1.8e-18 Score=147.71 Aligned_cols=69 Identities=20% Similarity=0.146 Sum_probs=58.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC-CchhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK-PSAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 235 (305)
++++++.+||+|++|+++.+ ++++.++..+++|||++++|......+.+.+.+.. ..+.+.++++|+..
T Consensus 131 ~~~r~~~~LSGGq~QRValA---------rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 131 LAGRYPHELSGGQQQRAALA---------RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp GTTSCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45677889999999999999 99999999999999999999999999987666653 34677788888653
No 84
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.58 E-value=1.9e-18 Score=148.56 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=61.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++++.+||+|++|+++.+ ++++.+|..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 126 ~~~r~p~~LSGGqrQRVaiA---------rAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 126 LLDRKPKALSGGQRQRVAIG---------RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp GTTCCGGGSCHHHHHHHHHH---------HHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred hhcCChhHCCHHHHHHHHHH---------HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 45677889999999999999 9999999999999999999999999999999988654 677888998754
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=7.8e-14 Score=121.67 Aligned_cols=185 Identities=17% Similarity=0.252 Sum_probs=117.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-cccch-HHHHHHHHHHHHH----hCCCeEEEEccccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-KFYGE-AEFRLKAAFDAAL----DHAPSLLLLDNLDVLC 85 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-~~~~~-~~~~l~~~~~~~~----~~~~~vl~ide~d~l~ 85 (305)
.+.+++|+||||||||++++++|+.++.+++.++++.+.. .+.+. .+..+..++..+. ...+++++|||+|.+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 150 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS 150 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence 4567999999999999999999999999999999988752 23333 2445555655432 3467899999999987
Q ss_pred CCCCCch-----hHHHHHHHHHHHHhhhc----c--------------cCCeEEEEEEecCCC-----------------
Q psy5649 86 TGRNRSD-----QERRLLSCLVTQVDRLH----E--------------LQACVVLLAVTTSLD----------------- 125 (305)
Q Consensus 86 ~~~~~~~-----~~~~~~~~l~~~~~~~~----~--------------~~~~~~~i~~t~~~~----------------- 125 (305)
..+.... ........|+..++... . ...++.+|+++|. +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~ 229 (376)
T 1um8_A 151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGF 229 (376)
T ss_dssp -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSC
T ss_pred hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCC
Confidence 6532210 11124555666666321 0 0133456666652 1
Q ss_pred -------------------------CCCccccCCCCcceEEEccCCCHHHHHHHHHH----HHh---------cCCCCCC
Q psy5649 126 -------------------------NVDVSLRTPGRLDQEIELPVPSRDQRAAILHC----LLT---------KVPHSLS 167 (305)
Q Consensus 126 -------------------------~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~----~l~---------~~~~~ls 167 (305)
.+.+.+.+ |++..+.+++++..+...|+.. +++ .....++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (376)
T 1um8_A 230 TQEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFE 307 (376)
T ss_dssp CCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEEC
T ss_pred CchhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEEC
Confidence 13344444 7878899999999999988851 211 1234577
Q ss_pred HHhHHHHHHHcC--CCcHHhHHHHHHHHHHHHhh
Q psy5649 168 TDQIQQVAFITH--GFVGGDLATLLSNATSALLV 199 (305)
Q Consensus 168 ~~~~~~la~~t~--g~~~~di~~l~~~~~~~~~~ 199 (305)
.+.++.++.... ....+++..++..+....+.
T Consensus 308 ~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 308 EEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 888888887643 46788888888887765543
No 86
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.57 E-value=2.6e-18 Score=139.72 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=58.8
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 234 (305)
++.+.++|+|+.|+++.+ ++++.+|..+++|||++++|+.....+.+.+.++... +.+.++++|+.
T Consensus 140 ~~~~~~LSgGq~QRv~iA---------ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIA---------RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp TCCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred hCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 456778999999999999 9999999999999999999999999999999988654 67788888864
No 87
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=7.2e-14 Score=132.48 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=118.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCc
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRS 91 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~ 91 (305)
+++|+||+|||||+++++++..+ +.+++.++|+.+....... -..+........++||||||+|.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~------ 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH------ 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC------
Confidence 69999999999999999999987 6789999999987765444 1122333445567899999998762
Q ss_pred hhHHHHHHHHHHHHhhhcc--------cCCeEEEEEEecCCCC------------CCccccCCCCcceEEEccCCCHHHH
Q psy5649 92 DQERRLLSCLVTQVDRLHE--------LQACVVLLAVTTSLDN------------VDVSLRTPGRLDQEIELPVPSRDQR 151 (305)
Q Consensus 92 ~~~~~~~~~l~~~~~~~~~--------~~~~~~~i~~t~~~~~------------l~~~l~~~~r~~~~i~~~~p~~~~r 151 (305)
......+++.++.-.- ....+++|+|||.... +.+.+.+ ||+..+.+++|+..++
T Consensus 593 ---~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~ 667 (758)
T 3pxi_A 593 ---PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHL 667 (758)
T ss_dssp ---HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHH
T ss_pred ---HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHH
Confidence 2344455555554110 1235678888886544 6677777 9988999999999999
Q ss_pred HHHHHHHHhc---------CCCCCCHHhHHHHHHH--cCCCcHHhHHHHHHHHHHHH
Q psy5649 152 AAILHCLLTK---------VPHSLSTDQIQQVAFI--THGFVGGDLATLLSNATSAL 197 (305)
Q Consensus 152 ~~i~~~~l~~---------~~~~ls~~~~~~la~~--t~g~~~~di~~l~~~~~~~~ 197 (305)
..|++.++.. ....++.+.++.++.. ...+..++|+.++.++....
T Consensus 668 ~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 668 TEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDR 724 (758)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHH
Confidence 9999876654 2345788888888764 34567788888888765433
No 88
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.56 E-value=1.2e-13 Score=117.67 Aligned_cols=150 Identities=15% Similarity=0.230 Sum_probs=105.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHH-H-hCCCeEEEEcccccccC
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAA-L-DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~vl~ide~d~l~~ 86 (305)
.+++|+||+|||||++++.+++.+ ..+++.+++++..+. ......+..+.... . ...+.+++|||+|.+..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA 116 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH
Confidence 359999999999999999999986 345788888764321 11122222222111 1 14578999999998732
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCC
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~l 166 (305)
.....+...++ .....+.+|.+++....+.+.+.+ |+ ..+.++.|+..+...++...+.+.+..+
T Consensus 117 ---------~~~~~L~~~le---~~~~~~~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i 181 (319)
T 2chq_A 117 ---------DAQAALRRTME---MYSKSCRFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKI 181 (319)
T ss_dssp ---------HHHHTTGGGTS---SSSSSEEEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCB
T ss_pred ---------HHHHHHHHHHH---hcCCCCeEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 11222333333 224567788888988889999888 66 4899999999999999998888888888
Q ss_pred CHHhHHHHHHHcCC
Q psy5649 167 STDQIQQVAFITHG 180 (305)
Q Consensus 167 s~~~~~~la~~t~g 180 (305)
+.+.++.++..+.|
T Consensus 182 ~~~~l~~l~~~~~G 195 (319)
T 2chq_A 182 TEDGLEALIYISGG 195 (319)
T ss_dssp CHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHcCC
Confidence 99889999876655
No 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.54 E-value=3.3e-15 Score=127.60 Aligned_cols=78 Identities=45% Similarity=0.807 Sum_probs=70.6
Q ss_pred hhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
..+..+.+...|++++|++.+++.+.+.+.+|..+++.+.. +..++.++|||||||||||++|+++|++++.+|+.|+
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 34556778899999999999999999999999999998876 5677889999999999999999999999999999885
No 90
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.54 E-value=1.3e-17 Score=137.57 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=61.6
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
.++.+.++|+|++|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...+.
T Consensus 147 ~~~~~~~LSgGqkQrv~iA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 147 YDRKAGELSGGQMKLVEIG---------RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217 (257)
T ss_dssp TTSBGGGSCHHHHHHHHHH---------HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred hCCCchhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3455678999999999999 9999999999999999999999999999999988655677888999765544
Q ss_pred c
Q psy5649 239 D 239 (305)
Q Consensus 239 ~ 239 (305)
.
T Consensus 218 ~ 218 (257)
T 1g6h_A 218 N 218 (257)
T ss_dssp G
T ss_pred H
Confidence 3
No 91
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.53 E-value=8.1e-18 Score=138.69 Aligned_cols=67 Identities=22% Similarity=0.200 Sum_probs=58.7
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.++.+.++|+|++|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+.
T Consensus 153 ~~~~~~~LSgGqkQRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 153 AHAYPDSLSGGQAQRVAIA---------RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp TTSCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4556778999999999999 999999999999999999999999999999988855566778888864
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=1.9e-13 Score=129.81 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=120.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccccc------------ccchHHHHHHHHHHHHHhCCCeEEEEccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK------------FYGEAEFRLKAAFDAALDHAPSLLLLDNL 81 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~~vl~ide~ 81 (305)
.+++|+||+|||||+++++++..++.+++.++++..... +.|..+. ..+........++|++|||+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETG
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCc
Confidence 479999999999999999999999999999999877542 2222111 12333444566799999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhhcc--c------CCeEEEEEEecCCC-------------------------CCC
Q psy5649 82 DVLCTGRNRSDQERRLLSCLVTQVDRLHE--L------QACVVLLAVTTSLD-------------------------NVD 128 (305)
Q Consensus 82 d~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~------~~~~~~i~~t~~~~-------------------------~l~ 128 (305)
|.+. ......+.+.++.-.- . -.++++|+|+|... .+.
T Consensus 567 ~~~~---------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 567 EKAH---------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp GGSC---------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred cccC---------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 9752 2344556666653211 0 13467888888743 456
Q ss_pred ccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC---------CCCCCHHhHHHHHHHc--CCCcHHhHHHHHHHHHHH
Q psy5649 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV---------PHSLSTDQIQQVAFIT--HGFVGGDLATLLSNATSA 196 (305)
Q Consensus 129 ~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~---------~~~ls~~~~~~la~~t--~g~~~~di~~l~~~~~~~ 196 (305)
+.+.+ ||+..+.+++++..++..|++.++.+. ...++.+.++.++... .++..+++..+++++...
T Consensus 638 ~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 638 PEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred HHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 66766 998889999999999999998777532 2357787888888653 456688888888877653
No 93
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.53 E-value=8.2e-18 Score=144.80 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.+||+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 134 ~~~r~~~~LSGGq~QRvalA---------rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 134 LLNRYPAQLSGGQRQRVAVA---------RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp GTTSCTTTCCSSCHHHHHHH---------HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45667889999999999999 9999999999999999999999999999999888654 667788888743
No 94
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.53 E-value=6.1e-13 Score=115.81 Aligned_cols=160 Identities=20% Similarity=0.233 Sum_probs=113.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..++|+||+|+||||+++.+++.+.. .+..++.... .....++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~ 111 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNV 111 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHH
Confidence 346899999999999999999998754 2333433211 0112344555555
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ..+.|++|||+|.+.. .....+...++.. ...+.+|.+++....+.+.+.+ |+ ..++++
T Consensus 112 ~~~~~~~~~~vliiDe~~~l~~---------~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~ 176 (373)
T 1jr3_A 112 QYAPARGRFKVYLIDEVHMLSR---------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILS--RC-LQFHLK 176 (373)
T ss_dssp TSCCSSSSSEEEEEECGGGSCH---------HHHHHHHHHHHSC---CSSEEEEEEESCGGGSCHHHHT--TS-EEEECC
T ss_pred hhccccCCeEEEEEECcchhcH---------HHHHHHHHHHhcC---CCceEEEEEeCChHhCcHHHHh--he-eEeeCC
Confidence 42 3468999999998731 2234455555432 4567778888888888888887 55 789999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
.|+..+...++...+++.+..++.+.++.++..+.| +++++..++.++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 999999999999888777778888889999988877 5666777776653
No 95
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.52 E-value=7.9e-18 Score=144.23 Aligned_cols=69 Identities=22% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 126 ~~~r~~~~LSgGq~QRvalA---------rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (359)
T 2yyz_A 126 LLDRKPTQLSGGQQQRVALA---------RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195 (359)
T ss_dssp GTTSCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 45667889999999999999 9999999999999999999999999999999887543 567788888643
No 96
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.52 E-value=5.6e-15 Score=127.66 Aligned_cols=77 Identities=45% Similarity=0.818 Sum_probs=65.9
Q ss_pred hhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+....+...|++|+|++.+++.+.+.+.||+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.|+
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 3445567889999999999999999999999999998886 5678889999999999999999999999999999885
No 97
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.52 E-value=5.7e-18 Score=145.17 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 133 ~~~~~~~~LSGGq~QRvalA---------raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 133 VLNHFPRELSGAQQQRVALA---------RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp GTTSCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 34566789999999999999 9999999999999999999999999999999888543 567788888643
No 98
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.52 E-value=7.5e-18 Score=143.99 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=60.1
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 138 ~~~r~~~~LSGGq~QRvalA---------rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 207 (355)
T 1z47_A 138 YANRFPHELSGGQQQRVALA---------RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207 (355)
T ss_dssp GTTSCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 45667789999999999999 9999999999999999999999999999999888644 667788888643
No 99
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=6.4e-13 Score=113.51 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=108.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcC-----CeEEEEecccccccccchHHHHHHHHHHHH-H-hCCCeEEEEcccccccCC
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMK-----VHTVVIQVADMFSKFYGEAEFRLKAAFDAA-L-DHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~-----~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~vl~ide~d~l~~~ 87 (305)
+++|+||+|+|||++++++++.+. ..++.+++++..+. ......+....... . ...+.+++|||+|.+..
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~- 124 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ- 124 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-
Confidence 599999999999999999998863 34777777643211 11111222221110 0 14578999999998732
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls 167 (305)
.....+...++.. ...+.+|.+++....+.+.+.+ |+. .+.+++++..+...++...+...+..++
T Consensus 125 --------~~~~~L~~~le~~---~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 190 (327)
T 1iqp_A 125 --------DAQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELT 190 (327)
T ss_dssp --------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEEC
T ss_pred --------HHHHHHHHHHHhc---CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCC
Confidence 1223344444432 3446677788888888888887 664 7899999999999999888887777788
Q ss_pred HHhHHHHHHHcCCCcHHhHHHHHHH
Q psy5649 168 TDQIQQVAFITHGFVGGDLATLLSN 192 (305)
Q Consensus 168 ~~~~~~la~~t~g~~~~di~~l~~~ 192 (305)
.+.++.++..+.| +++.+..+++.
T Consensus 191 ~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 191 EEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 8889999988766 33333444443
No 100
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=3.1e-13 Score=115.32 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=107.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEecccccccccchHHHHHHHHHHHHH-------hCCCeEEEEcccc
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL-------DHAPSLLLLDNLD 82 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~vl~ide~d 82 (305)
+++|+||+|+|||++++.+++.+ ...++.+++++..+ ...++..++... ...+.+++|||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 49999999999999999999886 34577777765321 234445555443 2347899999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcC
Q psy5649 83 VLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV 162 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~ 162 (305)
.+.. .....+...++.. ...+.+|.+++....+.+.+.+ |+ ..++++.|+..+..+++...+...
T Consensus 118 ~l~~---------~~~~~L~~~le~~---~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~ 182 (323)
T 1sxj_B 118 SMTA---------GAQQALRRTMELY---SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLE 182 (323)
T ss_dssp GSCH---------HHHHTTHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCH---------HHHHHHHHHHhcc---CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHc
Confidence 8742 1123344444432 3445667788888888888888 65 489999999999999998887766
Q ss_pred CCCCCHHhHHHHHHHcCCCcH
Q psy5649 163 PHSLSTDQIQQVAFITHGFVG 183 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~ 183 (305)
+..++.+.++.++..+.|...
T Consensus 183 ~~~~~~~~~~~l~~~~~G~~r 203 (323)
T 1sxj_B 183 DVKYTNDGLEAIIFTAEGDMR 203 (323)
T ss_dssp TCCBCHHHHHHHHHHHTTCHH
T ss_pred CCCCCHHHHHHHHHHcCCCHH
Confidence 777888889999988766443
No 101
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.50 E-value=8.9e-18 Score=144.05 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=59.6
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 126 ~~~r~~~~LSGGq~QRvalA---------rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 195 (362)
T 2it1_A 126 LLNRYPWQLSGGQQQRVAIA---------RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA 195 (362)
T ss_dssp CTTCCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HhhCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 34566778999999999999 9999999999999999999999999999999888544 667788888653
No 102
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=5.6e-13 Score=115.06 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=117.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE----Eecccccc---------------------cccchHHHHH-----
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV----IQVADMFS---------------------KFYGEAEFRL----- 61 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~----v~~~~~~~---------------------~~~~~~~~~l----- 61 (305)
...+++|+||+|||||++++++++.++..... ++|..... ...+.....+
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 123 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD 123 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech
Confidence 34579999999999999999999988632110 11111000 0001111111
Q ss_pred -HHHHHHHH---------hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh----cc------cCCeEEEEEEe
Q psy5649 62 -KAAFDAAL---------DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL----HE------LQACVVLLAVT 121 (305)
Q Consensus 62 -~~~~~~~~---------~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~----~~------~~~~~~~i~~t 121 (305)
...+.... ...+++++|||+|.+.. .....+...++.- .. ....+.+|+++
T Consensus 124 ~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~ 194 (350)
T 1g8p_A 124 IERAISKGEKAFEPGLLARANRGYLYIDECNLLED---------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSG 194 (350)
T ss_dssp HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEE
T ss_pred hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEe
Confidence 11222221 12378999999998632 1233444444431 00 01367889999
Q ss_pred cCCC-CCCccccCCCCcceEEEccCC-CHHHHHHHHHHHH-----------------------------hcCCCCCCHHh
Q psy5649 122 TSLD-NVDVSLRTPGRLDQEIELPVP-SRDQRAAILHCLL-----------------------------TKVPHSLSTDQ 170 (305)
Q Consensus 122 ~~~~-~l~~~l~~~~r~~~~i~~~~p-~~~~r~~i~~~~l-----------------------------~~~~~~ls~~~ 170 (305)
|..+ .+++++.+ ||...+.++.| +.+++..|++..+ ......++.+.
T Consensus 195 n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~ 272 (350)
T 1g8p_A 195 NPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA 272 (350)
T ss_dssp CSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH
T ss_pred CCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH
Confidence 8744 78999998 99888999998 6777778775421 11133678877
Q ss_pred HHHHHHHcCCC---cHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 171 IQQVAFITHGF---VGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 171 ~~~la~~t~g~---~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
++.++....+. +.+.+..++..+...+..+ ....++.+++.+++....
T Consensus 273 ~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~---~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 273 LYDCAALCIALGSDGLRGELTLLRSARALAALE---GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT---TCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc---CCCcCCHHHHHHHHHHHH
Confidence 77777665442 4677788887776655433 234577788887776553
No 103
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.50 E-value=1.1e-17 Score=135.04 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=58.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++...+.+.++++|+.
T Consensus 134 ~~~~~~~LSgGq~qrv~la---------ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 134 LSRKPYELSGGEQQRVAIA---------RALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp TTCCGGGSCHHHHHHHHHH---------HHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred hhCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3455678999999999999 999999999999999999999999999999988865466778888863
No 104
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.49 E-value=7.6e-17 Score=133.15 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=59.8
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++...+.+.++++|+.
T Consensus 147 ~~~~~~~LSgGq~qRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 213 (262)
T 1b0u_A 147 QGKYPVHLSGGQQQRVSIA---------RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213 (262)
T ss_dssp HTSCGGGSCHHHHHHHHHH---------HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 6777889999999999999 999999999999999999999999999999988865566778888864
No 105
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=6.3e-13 Score=114.96 Aligned_cols=160 Identities=19% Similarity=0.288 Sum_probs=104.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc-CCe----------------------------EEEEecccccccccchHHHHHHHH
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM-KVH----------------------------TVVIQVADMFSKFYGEAEFRLKAA 64 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l-~~~----------------------------~~~v~~~~~~~~~~~~~~~~l~~~ 64 (305)
.+++|+||+|+||||+++++++.+ ... ++.++.++.. ......+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 112 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQEL 112 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHH
Confidence 349999999999999999999954 221 1222222110 0001124444
Q ss_pred HHHHH--------------hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCcc
Q psy5649 65 FDAAL--------------DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVS 130 (305)
Q Consensus 65 ~~~~~--------------~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~ 130 (305)
++.+. ...|.+++|||++.+. ......+...++.. .....+|.+|+.++.+.+.
T Consensus 113 i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~---------~~~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~ 180 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT---------KDAQAALRRTMEKY---SKNIRLIMVCDSMSPIIAP 180 (354)
T ss_dssp HHHHTTTTC------------CCEEEEEECTTSSC---------HHHHHHHHHHHHHS---TTTEEEEEEESCSCSSCHH
T ss_pred HHHHHHhccccccccccccCCCCeEEEEeCccccC---------HHHHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHH
Confidence 44432 2356799999998742 11223445555543 2345677788888889899
Q ss_pred ccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCC-HHhHHHHHHHcCCCcHHhHHHHHHHH
Q psy5649 131 LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLS-TDQIQQVAFITHGFVGGDLATLLSNA 193 (305)
Q Consensus 131 l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls-~~~~~~la~~t~g~~~~di~~l~~~~ 193 (305)
+++ |+ ..++++.|+..+...+++..+.+.+..++ .+.++.++..+.| +.+++..+++.+
T Consensus 181 l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 181 IKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp HHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred HHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 988 76 78999999999999999988877677777 7788999988755 344444444444
No 106
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.49 E-value=3.9e-17 Score=135.26 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=63.4
Q ss_pred HHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 157 ~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.+.++.+..+|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++...+.+.++++|+...
T Consensus 130 ~~~~~~~~~LSgGq~qRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~ 200 (266)
T 2yz2_A 130 SFKDRVPFFLSGGEKRRVAIA---------SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200 (266)
T ss_dssp HHTTCCGGGSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred ccccCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 355667789999999999999 99999999999999999999999999999999885446778889997655
Q ss_pred ccc
Q psy5649 237 WSD 239 (305)
Q Consensus 237 ~~~ 239 (305)
+..
T Consensus 201 ~~~ 203 (266)
T 2yz2_A 201 VIN 203 (266)
T ss_dssp TGG
T ss_pred HHH
Confidence 443
No 107
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.48 E-value=4.3e-14 Score=118.61 Aligned_cols=75 Identities=53% Similarity=0.988 Sum_probs=70.5
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.+...|++++|++.+++.+.+.+.++..+++.+..+++..+.+++|+||||||||++|+++|++++.+|+.|.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 345678899999999999999999999999999999999999999999999999999999999999999999875
No 108
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.48 E-value=1.1e-17 Score=137.47 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=59.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++...+.+.++++|+..
T Consensus 140 ~~~~~~~LSgGq~qRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 140 IKDRVSTYSKGMVRKLLIA---------RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp GGSBGGGCCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 4556778999999999999 9999999999999999999999999999999888655667788888643
No 109
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.48 E-value=6.1e-17 Score=139.63 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=60.2
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.++... +.+.++++|+..
T Consensus 132 ~~~r~~~~LSGGq~QRvalA---------rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 201 (372)
T 1g29_1 132 LLNRKPRELSGGQRQRVALG---------RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (372)
T ss_dssp GTTCCGGGSCHHHHHHHHHH---------HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HhcCCcccCCHHHHHHHHHH---------HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 45667889999999999999 9999999999999999999999999999999887544 667788888653
No 110
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.48 E-value=3.2e-17 Score=135.51 Aligned_cols=68 Identities=15% Similarity=0.078 Sum_probs=58.1
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHH------HHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLS------NATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVE 231 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 231 (305)
.++.+.++|+|++|+++.+ ++++. ++..+++|||++++|+.....+.+.+.++... +.+.++++
T Consensus 135 ~~~~~~~LSgGq~QRv~iA---------raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vt 205 (266)
T 4g1u_C 135 AQRDYRVLSGGEQQRVQLA---------RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205 (266)
T ss_dssp TTSBGGGCCHHHHHHHHHH---------HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred hcCCcccCCHHHHHHHHHH---------HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 3445678999999999999 99999 99999999999999999999999999988654 35778888
Q ss_pred CCCC
Q psy5649 232 VPNV 235 (305)
Q Consensus 232 ~~~~ 235 (305)
|+..
T Consensus 206 Hdl~ 209 (266)
T 4g1u_C 206 HDLN 209 (266)
T ss_dssp SCHH
T ss_pred cCHH
Confidence 8754
No 111
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.47 E-value=3.6e-17 Score=139.66 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
++++.+.++|+|+.|+++.+ ++++.++..+++|||++++|....+.+.+.++++... +.+.++++|+..
T Consensus 120 ~~~~~~~~LSgGq~QRvalA---------raL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ 189 (348)
T 3d31_A 120 LLDRNPLTLSGGEQQRVALA---------RALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189 (348)
T ss_dssp TTTSCGGGSCHHHHHHHHHH---------HHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45667789999999999999 9999999999999999999999999999999888543 667788888643
No 112
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.46 E-value=2.4e-16 Score=128.92 Aligned_cols=68 Identities=19% Similarity=0.168 Sum_probs=58.6
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH-------HHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhcc
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT-------SALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVE 231 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 231 (305)
+++.+..+|+|++|+++.+ ++++.++. .+++|||++++|+...+.+.+.+.++...+.+.++++
T Consensus 120 ~~~~~~~LSgGq~qrv~lA---------raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 120 LGRSTNQLSGGEWQRVRLA---------AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp TTSBGGGCCHHHHHHHHHH---------HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4455678999999999999 99999999 9999999999999999999999988854466778888
Q ss_pred CCCC
Q psy5649 232 VPNV 235 (305)
Q Consensus 232 ~~~~ 235 (305)
|+..
T Consensus 191 Hd~~ 194 (249)
T 2qi9_C 191 HDLN 194 (249)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 8643
No 113
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.46 E-value=3.4e-14 Score=126.34 Aligned_cols=77 Identities=45% Similarity=0.828 Sum_probs=68.1
Q ss_pred hhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc-CceeEEee
Q psy5649 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES-KLNFISVK 304 (305)
Q Consensus 227 ~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~-~~~~~~v~ 304 (305)
.+....+...|++|+|++.+++.+.+.+.||+.+++.|.. +..+++|+||+||||||||++|+++|+++ +.+|+.|+
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3455668889999999999999999999999999988764 35677899999999999999999999999 89999885
No 114
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.46 E-value=1.3e-16 Score=127.34 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=61.3
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCccc
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (305)
++.+..+|+|++|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...+..
T Consensus 128 ~~~~~~LSgGqkqrv~la---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLA---------STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp TSBGGGSCHHHHHHHHHH---------HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred CCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 445668999999999999 99999999999999999999999999999999886556677888997665544
Q ss_pred c
Q psy5649 240 I 240 (305)
Q Consensus 240 i 240 (305)
+
T Consensus 199 ~ 199 (214)
T 1sgw_A 199 V 199 (214)
T ss_dssp E
T ss_pred h
Confidence 3
No 115
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.44 E-value=8.2e-14 Score=115.37 Aligned_cols=71 Identities=46% Similarity=0.909 Sum_probs=59.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+...|++++|++.+++.+.+.+.+ ..+++.|...+...+.+++|+||||||||++|+++|++++.+|+.|+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~ 71 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 356799999999999999998876 67778888899999999999999999999999999999999999875
No 116
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.44 E-value=7e-14 Score=115.53 Aligned_cols=73 Identities=41% Similarity=0.779 Sum_probs=61.1
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.++...|++++|++.+++.+.+.+.+ +.+++.+..++...+.|++|+||||||||++|+++|++++.+|+.|+
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~ 77 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 77 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 34677899999999999999988775 66777888889999999999999999999999999999999998875
No 117
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=1.6e-16 Score=132.23 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=60.6
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhh--hhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQ--VLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~ 236 (305)
+++.+.++|+|++|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+. ++++|+...
T Consensus 155 ~~~~~~~LSgGqkqRv~lA---------raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 155 AQQYIGYLSTGEKQRVMIA---------RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp TTSBGGGSCHHHHHHHHHH---------HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 3455678999999999999 99999999999999999999999999999998886556677 888887654
Q ss_pred cc
Q psy5649 237 WS 238 (305)
Q Consensus 237 ~~ 238 (305)
+.
T Consensus 226 ~~ 227 (279)
T 2ihy_A 226 IT 227 (279)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 118
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=1.9e-12 Score=111.27 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=100.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCC-----eEEEEecccccccccchHHHHHHHHHHHHHh------CCCeEEEEccccc
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKV-----HTVVIQVADMFSKFYGEAEFRLKAAFDAALD------HAPSLLLLDNLDV 83 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~vl~ide~d~ 83 (305)
+++|+|||||||||+++++++.+.. .+..+++++..+ ...+++.+..... ..+.|++|||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 3999999999999999999998643 356666654311 1223333332221 2367999999998
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCC
Q psy5649 84 LCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVP 163 (305)
Q Consensus 84 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~ 163 (305)
+.. .....+...++.. .....++.++|....+.+.+.+ |+ ..+.++.++..+....+...++...
T Consensus 122 l~~---------~~~~~L~~~le~~---~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 122 MTN---------AAQNALRRVIERY---TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp SCH---------HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCH---------HHHHHHHHHHhcC---CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcC
Confidence 732 1123344455443 2334566778888889999988 66 4788999999999998888887777
Q ss_pred CCCCHHhHHHHHHHcCC
Q psy5649 164 HSLSTDQIQQVAFITHG 180 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g 180 (305)
..++....+.++..+.|
T Consensus 187 ~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 187 LKLSPNAEKALIELSNG 203 (340)
T ss_dssp CCBCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 78888888888877544
No 119
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.43 E-value=2.7e-16 Score=129.11 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=57.2
Q ss_pred HHhcCCCC-CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 158 LLTKVPHS-LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 158 ~l~~~~~~-ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
+.++.+.+ +|+|+.|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...
T Consensus 135 ~~~~~~~~~LSgGqkQrv~iA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 135 YLSRYLNEGFSGGEKKRNEIL---------QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI 205 (250)
T ss_dssp GGGSBTTCC----HHHHHHHH---------HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG
T ss_pred HhcCCcccCCCHHHHHHHHHH---------HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 34555677 999999999999 99999999999999999999999999999999886666778889997644
Q ss_pred c
Q psy5649 237 W 237 (305)
Q Consensus 237 ~ 237 (305)
.
T Consensus 206 ~ 206 (250)
T 2d2e_A 206 L 206 (250)
T ss_dssp G
T ss_pred H
Confidence 3
No 120
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.43 E-value=1.4e-12 Score=124.96 Aligned_cols=172 Identities=18% Similarity=0.213 Sum_probs=120.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEeccccccccc------------chHHHHHHHHHHHHHhCCCeEEEE
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFY------------GEAEFRLKAAFDAALDHAPSLLLL 78 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~vl~i 78 (305)
.+++|+||+|||||+++++++..+ +.+++.++|+.+..... |..+ ...+.........++|+|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~l 666 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 666 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEE
Confidence 479999999999999999999988 78899999987754311 1111 122333344456789999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhhhcc--c------CCeEEEEEEecCC--------------------------
Q psy5649 79 DNLDVLCTGRNRSDQERRLLSCLVTQVDRLHE--L------QACVVLLAVTTSL-------------------------- 124 (305)
Q Consensus 79 de~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~--~------~~~~~~i~~t~~~-------------------------- 124 (305)
||+|.+. ......|++.++.-.- . -.++++|+|||..
T Consensus 667 DEi~~l~---------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~ 737 (854)
T 1qvr_A 667 DEIEKAH---------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 737 (854)
T ss_dssp SSGGGSC---------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ecccccC---------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHH
Confidence 9998752 2345556666653211 0 1356688888862
Q ss_pred CCCCccccCCCCcceEEEccCCCHHHHHHHHHHHHhc---------CCCCCCHHhHHHHHHHcC--CCcHHhHHHHHHHH
Q psy5649 125 DNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTK---------VPHSLSTDQIQQVAFITH--GFVGGDLATLLSNA 193 (305)
Q Consensus 125 ~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~---------~~~~ls~~~~~~la~~t~--g~~~~di~~l~~~~ 193 (305)
..+.+.+.+ |++..+.+.+|+..+...|++.++++ ....++.+.++.++.... .++.++|..++.++
T Consensus 738 ~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 738 QHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp TTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHH
T ss_pred hhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHH
Confidence 234455555 88888888999999999999877652 134578888999988766 68899999998887
Q ss_pred HHHHh
Q psy5649 194 TSALL 198 (305)
Q Consensus 194 ~~~~~ 198 (305)
....+
T Consensus 816 ~~~~~ 820 (854)
T 1qvr_A 816 LETPL 820 (854)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 65443
No 121
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=1.8e-16 Score=129.34 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
..++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+.
T Consensus 132 ~~~~~~~~LSgGq~qrv~lA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 132 RLKQLGGTLSGGEQQMLAIG---------RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp TTTSBSSSSCHHHHHHHHHH---------HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 44566789999999999999 999999999999999999999999999999988864566778888864
No 122
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.42 E-value=2.7e-13 Score=111.75 Aligned_cols=76 Identities=42% Similarity=0.842 Sum_probs=66.9
Q ss_pred hhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 228 ~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+..+.+...|++++|+++++..+.+...+ +.++..+.+++++.++|++|+||||||||++++++|+.++.+++.++
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 44566888999999999999999988775 46678899999999999999999999999999999999998888774
No 123
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.42 E-value=1.2e-13 Score=116.52 Aligned_cols=75 Identities=41% Similarity=0.767 Sum_probs=66.4
Q ss_pred hccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 229 ~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....+...|++++|.+.+++.+.+.+.+|..+++.+...+ .++.+++|+||||||||++|+++|++++.+|+.|+
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 3445678999999999999999999999998888877654 45788999999999999999999999999999875
No 124
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.42 E-value=6.6e-16 Score=125.70 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=58.4
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++... +.+.++++|+..
T Consensus 120 ~~~~~~~LSgGqkqRv~lA---------ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 120 LDRKPARLSGGERQRVALA---------RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp TTCCGGGSCHHHHHHHHHH---------HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3445668999999999999 9999999999999999999999999999999888543 667788888643
No 125
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.42 E-value=1.4e-12 Score=116.63 Aligned_cols=134 Identities=14% Similarity=0.176 Sum_probs=77.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCC--eEEEEecc-----cccccccchHHHHHHHHHHHHHhC---CCeEEEEccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVA-----DMFSKFYGEAEFRLKAAFDAALDH---APSLLLLDNL 81 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~--~~~~v~~~-----~~~~~~~~~~~~~l~~~~~~~~~~---~~~vl~ide~ 81 (305)
.+.+++|+||||||||+++++++..++. ++..+++. ++.+...+..... ...|..+... .++|+||||+
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI 118 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEI 118 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESG
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhH
Confidence 4568999999999999999999998843 45555443 2222111111000 1122222221 4679999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhhc-------ccCCeEEEEEEecCCCC---CCccccCCCCcceEEEccCCCH-HH
Q psy5649 82 DVLCTGRNRSDQERRLLSCLVTQVDRLH-------ELQACVVLLAVTTSLDN---VDVSLRTPGRLDQEIELPVPSR-DQ 150 (305)
Q Consensus 82 d~l~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~i~~t~~~~~---l~~~l~~~~r~~~~i~~~~p~~-~~ 150 (305)
+.+. ......++..++.-. ...+..++|++||...+ ..+++.. ||...+.++.|+. .+
T Consensus 119 ~r~~---------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee 187 (500)
T 3nbx_X 119 WKAG---------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKAN 187 (500)
T ss_dssp GGCC---------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHH
T ss_pred hhhc---------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhh
Confidence 7532 233445555554211 01122245667775332 2236666 8988899999987 67
Q ss_pred HHHHHHH
Q psy5649 151 RAAILHC 157 (305)
Q Consensus 151 r~~i~~~ 157 (305)
+..|+..
T Consensus 188 ~~~IL~~ 194 (500)
T 3nbx_X 188 FRSMLTS 194 (500)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 7888764
No 126
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.42 E-value=2.4e-13 Score=120.78 Aligned_cols=72 Identities=40% Similarity=0.819 Sum_probs=66.1
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+...|+||+|.+++++.+.+.+.+ +.++..|.+++++.|+|++|+||||||||++|+++|++++.+|+.|+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 3567899999999999999998876 56788899999999999999999999999999999999999999885
No 127
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.41 E-value=1.8e-15 Score=127.04 Aligned_cols=62 Identities=21% Similarity=0.151 Sum_probs=54.5
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+|+.|+++.+ ++++.++..+++|||++++|..+...+.+.+.++.. +.+.++++|+.
T Consensus 188 g~~LSGGqrQRvaiA---------RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l 249 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIA---------RTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL 249 (306)
T ss_dssp SBCCCHHHHHHHHHH---------HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH
T ss_pred cCCCCHHHHHHHHHH---------HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh
Confidence 368999999999999 999999999999999999999999999999988754 35677788854
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.41 E-value=2.5e-11 Score=126.73 Aligned_cols=282 Identities=12% Similarity=0.170 Sum_probs=149.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHH-HHhhcCCeEEEEecccccccccchHHHHHHHHHHHHH----h------------CCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHS-LASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL----D------------HAP 73 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~-la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~----~------------~~~ 73 (305)
..+..+||+||+|||||++++. +++..+.++..++++.-- ....+...++... . ...
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence 4567899999999999987765 444446667777775432 2234444444211 0 123
Q ss_pred eEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhccc-------CCeEEEEEEecCC-----CCCCccccCCCCcceEE
Q psy5649 74 SLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL-------QACVVLLAVTTSL-----DNVDVSLRTPGRLDQEI 141 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~i~~t~~~-----~~l~~~l~~~~r~~~~i 141 (305)
.|+||||++.--.+.-........+.+++..-. .... -.++.+|+++|.+ ..+++++.| || ..+
T Consensus 1376 ~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g-~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi 1451 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYGTQRVITFIRQMVEKGG-FWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PIL 1451 (3245)
T ss_dssp EEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSE-EEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEE
T ss_pred EEEEecccCCCCccccccccHHHHHHHHHHcCC-eEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEE
Confidence 599999998633322222233344444443211 1110 1456788998876 468888887 77 569
Q ss_pred EccCCCHHHHHHHHHHHHhcCCC---CCCHHhHHHHHHH------------------cCCCcHHhHHHHHHHHHHHHhhh
Q psy5649 142 ELPVPSRDQRAAILHCLLTKVPH---SLSTDQIQQVAFI------------------THGFVGGDLATLLSNATSALLVE 200 (305)
Q Consensus 142 ~~~~p~~~~r~~i~~~~l~~~~~---~ls~~~~~~la~~------------------t~g~~~~di~~l~~~~~~~~~~~ 200 (305)
.++.|+..+...|...++..... .+.. ....++.+ -.-|+.+|+..+++.........
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~-~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~ 1530 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRS-FADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTM 1530 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTT-SHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCcc
Confidence 99999999999997765442211 1110 01111111 13468999999888754331110
Q ss_pred hcCCC--------------------ccccHHHHHHHhhhcCCchhhh---hhccCCC-------CCcccccchHHHHHHH
Q psy5649 201 TEGTG--------------------QVLSYDGVMRALDHVKPSAMRQ---VLVEVPN-------VKWSDIGGQDEVKLKL 250 (305)
Q Consensus 201 ~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~-------~~~~~i~g~~~~~~~l 250 (305)
..... +....+.+.+.+.......+.. .....+. .....+ ..+++++.+
T Consensus 1531 ~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v-~~~~l~~~l 1609 (3245)
T 3vkg_A 1531 DGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV-NRSDLREYV 1609 (3245)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC-CHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC-CHHHHHHHH
Confidence 00000 1111122222222211111100 0000010 011122 334455554
Q ss_pred HHHhhccC---------CCHHH------HHhcCCCCCcc-eeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 251 RQSVEWPL---------KHPEA------FARLGIKPPRG-ILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 251 ~~~~~~~~---------~~~~~------~~~~~~~~~~g-ill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
.+.+.... -+.++ ..|+ ++.|+| .||+|..||||++|+|..|--+|+.++.|++
T Consensus 1610 ~~~L~~yn~~~~~m~LVlF~daleHv~RI~RI-L~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i 1679 (3245)
T 3vkg_A 1610 KARLKVFYEEELDVPLVLFNEVLDHILRIDRV-FRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKV 1679 (3245)
T ss_dssp HHHHHTTC------CCCCCHHHHHHHHHHHHH-HTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC-
T ss_pred HHHHHHHHhcccCceEEeHHHHHHHHHHHHHH-HccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEee
Confidence 44433211 12222 2222 345666 9999999999999999999999999998864
No 129
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.41 E-value=1.9e-15 Score=123.63 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=55.8
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
...+|+|++|+++.+ ++++.++..+++|||++++|+.+...+.+.+.++. .+.+.++++|+..
T Consensus 143 ~~~LSgGq~qRv~iA---------raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~ 205 (247)
T 2ff7_A 143 GAGLSGGQRQRIAIA---------RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS 205 (247)
T ss_dssp TTCCCHHHHHHHHHH---------HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG
T ss_pred CCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 368999999999999 99999999999999999999999999999998884 3667788888644
No 130
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.41 E-value=2.6e-13 Score=121.46 Aligned_cols=72 Identities=44% Similarity=0.876 Sum_probs=68.7
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+...|++++|.+.+++.+.+.+.+|..+++.|..++..++.++|||||||||||++|+++|++++.+|+.|+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999999999999886
No 131
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.40 E-value=1.2e-15 Score=126.50 Aligned_cols=65 Identities=18% Similarity=0.111 Sum_probs=57.3
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 234 (305)
+.+..+|+|++|+++.+ ++++.++..+++|||++++|..+...+.+.+.++.. .+.+.++++|+.
T Consensus 152 ~~~~~LSgGq~QRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 152 ETGNQLSGGQRQAVALA---------RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp GGGTTSCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred CCcCCCCHHHHHHHHHH---------HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 45678999999999999 999999999999999999999999999999998864 366777888864
No 132
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.39 E-value=1.1e-13 Score=115.00 Aligned_cols=73 Identities=45% Similarity=0.839 Sum_probs=66.4
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.+...|+++.|.+.+++.+.+.+.+ +.+++.|..++...+.|++|+||||||||++|+++|++++.+|+.|+
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 34667899999999999999998775 77889999999999999999999999999999999999999998774
No 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=117.52 Aligned_cols=74 Identities=42% Similarity=0.866 Sum_probs=65.9
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
...+...|++++|.+.+++.+.+.+.||+.+++.|...+ .++++++|+||||||||++|+++|.+++.+|+.|+
T Consensus 76 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 76 DHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 344678899999999999999999999988888776654 56789999999999999999999999999999885
No 134
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.38 E-value=4.1e-15 Score=122.06 Aligned_cols=68 Identities=22% Similarity=0.131 Sum_probs=58.5
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
.++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.....+.+.+.++... +.+.++++|+..
T Consensus 122 ~~~~~~~LSgGq~qrv~lA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 122 AKREFTSLSGGQRQLILIA---------RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp TTSBGGGSCHHHHHHHHHH---------HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 3455678999999999999 9999999999999999999999999999999888544 667778888643
No 135
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.38 E-value=8.3e-12 Score=103.49 Aligned_cols=171 Identities=16% Similarity=0.144 Sum_probs=99.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC---CeEEEEecccccccccchHHHHH----HHHHHH--------HHhCCCeE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVADMFSKFYGEAEFRL----KAAFDA--------ALDHAPSL 75 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~---~~~~~v~~~~~~~~~~~~~~~~l----~~~~~~--------~~~~~~~v 75 (305)
..+.+++|+||+|||||+++++++.... .+++.++|+.+.... .+..+ ...|.. ......++
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~ 103 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL---LDSELFGHEAGAFTGAQKRHPGRFERADGGT 103 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH---HHHHHHCCC---------CCCCHHHHTTTSE
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH---HHHHhcCCcccccccccccccchhhhcCCcE
Confidence 3457899999999999999999998875 679999998763211 01100 000111 11123579
Q ss_pred EEEcccccccCCCCCchhHHHHHHHHHHHHhhhc--------ccCCeEEEEEEecCC-------CCCCccccCCCCcc-e
Q psy5649 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH--------ELQACVVLLAVTTSL-------DNVDVSLRTPGRLD-Q 139 (305)
Q Consensus 76 l~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~i~~t~~~-------~~l~~~l~~~~r~~-~ 139 (305)
|+|||++.+.. .....+...++.-. .....+.+|+++|.. ..+.+.+.+ ||. .
T Consensus 104 l~lDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~ 172 (265)
T 2bjv_A 104 LFLDELATAPM---------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFD 172 (265)
T ss_dssp EEEESGGGSCH---------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSE
T ss_pred EEEechHhcCH---------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCc
Confidence 99999998742 12233444444311 112346678888873 235566665 664 3
Q ss_pred EEEccCCCH--HHHHHHHHHHHhc----CC----CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 140 EIELPVPSR--DQRAAILHCLLTK----VP----HSLSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 140 ~i~~~~p~~--~~r~~i~~~~l~~----~~----~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
.+.+|..+. .+...+++.+++. .. ..++.+.++.+....-.-+.+++..++..+..
T Consensus 173 ~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 173 VVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred EEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 456655543 4445554444332 22 25788777777654333456677777776543
No 136
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.37 E-value=4.8e-15 Score=128.37 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=58.8
Q ss_pred HHHhcCCCC-----------CCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchh
Q psy5649 157 CLLTKVPHS-----------LSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAM 225 (305)
Q Consensus 157 ~~l~~~~~~-----------ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 225 (305)
.++++.+.. ||+|+.|+++.+ ++++.++..+++|||++++|......+.+.+.+... +.
T Consensus 136 ~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA---------RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~-~~ 205 (390)
T 3gd7_A 136 SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA---------RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA-DC 205 (390)
T ss_dssp HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH---------HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTT-TS
T ss_pred HHHhhcccccccccccccccCCHHHHHHHHHH---------HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CC
Confidence 356677776 999999999999 999999999999999999999999999999987653 46
Q ss_pred hhhhccCCCC
Q psy5649 226 RQVLVEVPNV 235 (305)
Q Consensus 226 ~~~~~~~~~~ 235 (305)
+.++++|+..
T Consensus 206 tvi~vtHd~e 215 (390)
T 3gd7_A 206 TVILCEARIE 215 (390)
T ss_dssp CEEEECSSSG
T ss_pred EEEEEEcCHH
Confidence 6777888653
No 137
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.36 E-value=1.4e-10 Score=121.16 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=87.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCch
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSD 92 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~ 92 (305)
..+..+.||+|||||++++.+|..++.+++.++|++-.. ...+.++|..+.. ..+..++||++.+- .
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~-~GaW~cfDEfNrl~------~ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQ-CGAWGCFDEFNRLE------E 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHH-HTCEEEEETTTSSC------H
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhh-cCcEEEehhhhcCC------H
Confidence 345689999999999999999999999999999987543 2345666666554 46788999998752 1
Q ss_pred hHHHHHHHHHHHHhh-hc--------------ccCCeEEEEEEecC----CCCCCccccCCCCcceEEEccCCCHHHHHH
Q psy5649 93 QERRLLSCLVTQVDR-LH--------------ELQACVVLLAVTTS----LDNVDVSLRTPGRLDQEIELPVPSRDQRAA 153 (305)
Q Consensus 93 ~~~~~~~~l~~~~~~-~~--------------~~~~~~~~i~~t~~----~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~ 153 (305)
..-+.+.+.+..+.. +. .......+++|.|. ..+++..++. +| +.+.+..|+.....+
T Consensus 671 ~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~e 747 (3245)
T 3vkg_A 671 RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIAQ 747 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHHH
Confidence 111222222221110 00 01234567888884 5688899988 77 669999999998888
Q ss_pred HH
Q psy5649 154 IL 155 (305)
Q Consensus 154 i~ 155 (305)
|.
T Consensus 748 i~ 749 (3245)
T 3vkg_A 748 VM 749 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 138
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=3.9e-11 Score=102.80 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=102.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC------------------------eEEEEecccccccccchHHHHHHHHHHHH
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV------------------------HTVVIQVADMFSKFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~------------------------~~~~v~~~~~~~~~~~~~~~~l~~~~~~~ 68 (305)
+..+||+||+|+|||++++.+|+.+.. ++..+++.+- ........++.+++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHH
Confidence 456999999999999999999998753 3444443210 0112234566677666
Q ss_pred Hh----CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 69 LD----HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 69 ~~----~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.. ....|++|||+|.+.. .....++..++. ....+++|.+|+.++.+.+.+++ |. ..++++
T Consensus 101 ~~~~~~~~~kvviIdead~l~~---------~a~naLLk~lEe---p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~ 165 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD---------AAANALLKTLEE---PPAETWFFLATREPERLLATLRS--RC-RLHYLA 165 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH---------HHHHHHHHHHTS---CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECC
T ss_pred hhccccCCcEEEEECchhhcCH---------HHHHHHHHHhcC---CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCC
Confidence 53 2467999999998742 123445555553 23456777788888999999998 66 579999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCc
Q psy5649 145 VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 145 ~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~ 182 (305)
.|+..+..+++.... .++.+.++.++..+.|-.
T Consensus 166 ~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSP 198 (334)
T ss_dssp CCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCH
T ss_pred CCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCH
Confidence 999999998887543 466777788887766643
No 139
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.36 E-value=4.8e-14 Score=116.69 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=58.4
Q ss_pred cCCC-CCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 161 KVPH-SLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 161 ~~~~-~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
+.+. .+|+|++|+++.+ ++++.++..+++|||++++|+...+.+.+.+.++...+.+.++++|+...
T Consensus 159 ~~~~~~LSgGq~QRv~iA---------raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 226 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDIL---------QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI 226 (267)
T ss_dssp SBTTTTCCHHHHHHHHHH---------HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG
T ss_pred CCcccCCCHHHHHHHHHH---------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH
Confidence 3344 4999999999999 99999999999999999999999999999999987667778888887543
No 140
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.35 E-value=9.9e-15 Score=120.32 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=56.6
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
.+..+|+|++|+++.+ ++++.++..+++|||++++|+.....+.+.+.++.. +.+.++++|+..
T Consensus 152 ~~~~LSgGqkqRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~ 215 (260)
T 2ghi_A 152 KGMKLSGGERQRIAIA---------RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS 215 (260)
T ss_dssp SSBCCCHHHHHHHHHH---------HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG
T ss_pred CcCcCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH
Confidence 4568999999999999 999999999999999999999999999999998864 567778888644
No 141
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.35 E-value=2.9e-14 Score=117.45 Aligned_cols=68 Identities=18% Similarity=0.015 Sum_probs=59.0
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
.+++.+.++|+|+.|+++.+ ++++.++..+++|||++++|+.+.+.+.+.+.++.. +.++++|+...+
T Consensus 121 ~~~~~~~~LSgGqkqRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~ 188 (263)
T 2pjz_A 121 ILRRKLYKLSAGQSVLVRTS---------LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDML 188 (263)
T ss_dssp GGGSBGGGSCHHHHHHHHHH---------HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGG
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHH
Confidence 34566778999999999999 999999999999999999999999999999998865 677888875443
No 142
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.34 E-value=9.1e-13 Score=117.75 Aligned_cols=71 Identities=41% Similarity=0.849 Sum_probs=65.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+...|++++|.++++..+.+...+ +.++..+.+++++.++|++|+||||||||+||+++|++++.+|+.|+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 678899999999999999998775 56677889999999999999999999999999999999999999875
No 143
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.34 E-value=6.7e-11 Score=104.25 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=117.7
Q ss_pred CcceEEE--EcCCCCcHHHHHHHHHhhc---------CCeEEEEecccccccc----------------cch-HHHHHHH
Q psy5649 12 KCNGILI--YGVNGTGKTSLIHSLASHM---------KVHTVVIQVADMFSKF----------------YGE-AEFRLKA 63 (305)
Q Consensus 12 ~~~~vll--~Gp~G~GKTtl~~~la~~l---------~~~~~~v~~~~~~~~~----------------~~~-~~~~l~~ 63 (305)
.+..++| +||+|+|||++++.+++.+ +..+++++|....... .+. ....+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 4567889 9999999999999999876 4567788864321100 011 1112222
Q ss_pred HHHHHH-hCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccC--CeEEEEEEecCCC---CCC---ccccCC
Q psy5649 64 AFDAAL-DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQ--ACVVLLAVTTSLD---NVD---VSLRTP 134 (305)
Q Consensus 64 ~~~~~~-~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~i~~t~~~~---~l~---~~l~~~ 134 (305)
+.+... ...|.+|+|||++.+...... ....+..+...+....... .++.+|++++..+ .++ +.+.+
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~---~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~- 204 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRI---AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES- 204 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTS---CHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT-
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCc---chHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh-
Confidence 222222 356889999999988643111 1223333444444332112 5677787776544 222 33334
Q ss_pred CCcceEEEccCCCHHHHHHHHHHHHhc--CCCCCCHHhHHHHHHHcC------CCcHHhHHHHHHHHHHHHhhhhcCCCc
Q psy5649 135 GRLDQEIELPVPSRDQRAAILHCLLTK--VPHSLSTDQIQQVAFITH------GFVGGDLATLLSNATSALLVETEGTGQ 206 (305)
Q Consensus 135 ~r~~~~i~~~~p~~~~r~~i~~~~l~~--~~~~ls~~~~~~la~~t~------g~~~~di~~l~~~~~~~~~~~~~~~~~ 206 (305)
++...+.+++++..+..+++...+.. ....++.+.++.++..+. |. +..+..++..+...+..+ ...
T Consensus 205 -~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~~~---~~~ 279 (412)
T 1w5s_A 205 -QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS-ARRAIVALKMACEMAEAM---GRD 279 (412)
T ss_dssp -TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHHHT---TCS
T ss_pred -hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHHHc---CCC
Confidence 44455999999999999999765542 223577888899998888 64 445566666654443322 223
Q ss_pred cccHHHHHHHhhh
Q psy5649 207 VLSYDGVMRALDH 219 (305)
Q Consensus 207 ~~~~~~~~~~l~~ 219 (305)
.++.+++..++..
T Consensus 280 ~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 280 SLSEDLVRKAVSE 292 (412)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3445556555544
No 144
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.34 E-value=3.8e-13 Score=109.87 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=54.9
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
...+|+|+.|+++.+ ++++.++..+++|||++++|+.+.+.+.+.+.++. .+.+.++++|+.
T Consensus 137 ~~~LSgGq~qrv~lA---------ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 198 (243)
T 1mv5_A 137 GVKISGGQRQRLAIA---------RAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL 198 (243)
T ss_dssp SBCCCHHHHHHHHHH---------HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH
T ss_pred cCcCCHHHHHHHHHH---------HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh
Confidence 358999999999999 99999999999999999999999999999998876 466777788853
No 145
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.33 E-value=9.7e-13 Score=115.20 Aligned_cols=78 Identities=44% Similarity=0.721 Sum_probs=68.1
Q ss_pred hhhhccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 226 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
..++...+...|++|.|.+.+++.+.+.+.++..+++.+..++ .++.++|||||||||||++|+++|.+++.+|+.|+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 3444556778999999999999999999999988888777665 45688999999999999999999999999999885
No 146
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.33 E-value=2.5e-13 Score=110.41 Aligned_cols=67 Identities=16% Similarity=0.080 Sum_probs=55.9
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhh---hcCCchhhhhhccCCCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALD---HVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~ 236 (305)
.+.+..+|+|+.|+++.+ ++++.++..+++|||++++|+.+...+.+.+. ... .+.+.++++|+...
T Consensus 122 ~~~~~~LSgGqkqRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~ 191 (237)
T 2cbz_A 122 GEKGVNLSGGQKQRVSLA---------RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY 191 (237)
T ss_dssp STTSBCCCHHHHHHHHHH---------HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT
T ss_pred cCCCCCCCHHHHHHHHHH---------HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH
Confidence 345678999999999999 99999999999999999999999999999884 333 35677778887543
No 147
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.32 E-value=8.1e-14 Score=128.08 Aligned_cols=63 Identities=25% Similarity=0.211 Sum_probs=56.1
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|++|+++.+ ++++.+|..+++|||+++.|+.+.+.+.+.+.+... +.+.++++|+.
T Consensus 477 ~~~~LSgGq~qr~~iA---------ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 477 NGTSLSGGQRQRVAIA---------RALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRL 539 (582)
T ss_pred CCCcCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 3478999999999999 999999999999999999999999999999998864 66777888864
No 148
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.32 E-value=3.1e-12 Score=106.84 Aligned_cols=73 Identities=41% Similarity=0.843 Sum_probs=65.2
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.+...|++++|.++++..+.+...+ +..+..+.++++..++|++|+||||||||+|++++|+.++..++.++
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 34778999999999999999988765 45678899999999999999999999999999999999998888774
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.31 E-value=1.3e-11 Score=104.25 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=100.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEeccccccccc-------------chHHHHHHHHHHHHHhCCCe
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFY-------------GEAEFRLKAAFDAALDHAPS 74 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~ 74 (305)
+.+.+++|+||+|||||+++++++... +.+++.++|+.+..... +... .....|..+ ..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a---~~g 98 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA---DGG 98 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH---TTS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc---CCC
Confidence 456789999999999999999999865 56899999987642110 0000 011223333 246
Q ss_pred EEEEcccccccCCCCCchhHHHHHHHHHHHHhhhc--------ccCCeEEEEEEecCC-------CCCCccccCCCCc-c
Q psy5649 75 LLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH--------ELQACVVLLAVTTSL-------DNVDVSLRTPGRL-D 138 (305)
Q Consensus 75 vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~i~~t~~~-------~~l~~~l~~~~r~-~ 138 (305)
+|||||++.+.. .....++..++... .....+.+|++||.. ..+.+.+.. |+ .
T Consensus 99 ~L~LDEi~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~ 167 (304)
T 1ojl_A 99 TLFLDEIGDISP---------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNV 167 (304)
T ss_dssp EEEEESCTTCCH---------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSS
T ss_pred EEEEeccccCCH---------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCe
Confidence 999999998732 12234455554321 012346788888864 122333333 44 2
Q ss_pred eEEEccCCC--HHHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHH
Q psy5649 139 QEIELPVPS--RDQRAAILHCLLTK-------VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATS 195 (305)
Q Consensus 139 ~~i~~~~p~--~~~r~~i~~~~l~~-------~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~ 195 (305)
..+.+|+.. .++...+++.++++ ....++.+.++.+....-.-+.+++.+++..+..
T Consensus 168 ~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 168 VAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp EEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred eEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 345555554 34445566655442 2346788888887765433356677777776654
No 150
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=3.6e-12 Score=116.94 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=80.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE----ecccccccccchH-HHH--H-HHHHHHHHhCCCeEEEEcccccccC
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI----QVADMFSKFYGEA-EFR--L-KAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v----~~~~~~~~~~~~~-~~~--l-~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++||+||||||||++|+++++.++...+.. ++.++.+...... ... . ...+..| ..++++|||+|.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~ 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec---CCCcEEeehhhhCCH
Confidence 899999999999999999999887655432 2222221111100 000 0 0011111 347999999998632
Q ss_pred CCCCchhHHHHHHHHHHHHhhhc----------ccCCeEEEEEEecCCC-------------CCCccccCCCCcce-EEE
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLH----------ELQACVVLLAVTTSLD-------------NVDVSLRTPGRLDQ-EIE 142 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~i~~t~~~~-------------~l~~~l~~~~r~~~-~i~ 142 (305)
.....+...++.-. ....++.+|+|+|... .+++++.+ ||+. .+.
T Consensus 406 ---------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~ 474 (595)
T 3f9v_A 406 ---------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFIL 474 (595)
T ss_dssp ---------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEE
T ss_pred ---------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEe
Confidence 12234455554211 1134577899999876 88889988 9974 455
Q ss_pred ccCCCHHHHHHHHHHHHhc
Q psy5649 143 LPVPSRDQRAAILHCLLTK 161 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~ 161 (305)
.+.|+.. ...|.++.+..
T Consensus 475 ~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 475 KDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp CCTTHHH-HHHHHHHHHTT
T ss_pred CCCCCHH-HHHHHHHHHHH
Confidence 6677777 77787766654
No 151
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.30 E-value=1.6e-13 Score=111.03 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHH-hhhcCCchhhhhhccCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRA-LDHVKPSAMRQVLVEVP 233 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~ 233 (305)
...+|+|++|+++.+ ++++.++..+++|||++++|+.+.+.+.+. +..... +.+.++++|+
T Consensus 128 ~~~LSgGqkqrv~lA---------ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~ 189 (229)
T 2pze_A 128 GITLSGGQRARISLA---------RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTSK 189 (229)
T ss_dssp CTTSCHHHHHHHHHH---------HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT-TSEEEEECCC
T ss_pred CCcCCHHHHHHHHHH---------HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC-CCEEEEEcCC
Confidence 468999999999999 999999999999999999999999999886 455543 5567778885
No 152
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.25 E-value=5.3e-13 Score=122.68 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=56.0
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+..+|+|++|+++.+ ++++.+|..+++|||+++.|+.+.+.+.+.+.+... +.+.++++|+..
T Consensus 478 ~~~LSgGq~qrl~iA---------ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~ 540 (582)
T 3b60_A 478 GVLLSGGQRQRIAIA---------RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS 540 (582)
T ss_dssp SCSSCHHHHHHHHHH---------HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG
T ss_pred CCCCCHHHHHHHHHH---------HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH
Confidence 468999999999999 999999999999999999999999999999988754 567778888654
No 153
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.23 E-value=1.3e-13 Score=126.54 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+|+|++|+++.+ ++++.+|..+++|||+++.|+.+...+.+.+++... +.+.++++|+..
T Consensus 476 ~~LSgGq~Qrv~lA---------ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~ 537 (578)
T 4a82_A 476 VKLSGGQKQRLSIA---------RIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS 537 (578)
T ss_dssp TTSCHHHHHHHHHH---------HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG
T ss_pred CcCCHHHHHHHHHH---------HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 57999999999999 999999999999999999999999999999988764 456777888654
No 154
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.23 E-value=1.1e-13 Score=127.53 Aligned_cols=62 Identities=24% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+..+|+|++|+++.+ ++++.++..+++|||+++.|..+.+.+.+.+.+... +.+.++++|+.
T Consensus 481 ~~~LSgGq~qrv~iA---------ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 542 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIA---------RALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542 (595)
T ss_dssp SCCCCHHHHHHHHHH---------HHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCH
T ss_pred CCcCCHHHHHHHHHH---------HHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 378999999999999 999999999999999999999999999999988755 46677788853
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.23 E-value=1.3e-10 Score=117.39 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=54.5
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhh---cCCeEEEEeccccccccc----------------chHHHHHHHHHHHH
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASH---MKVHTVVIQVADMFSKFY----------------GEAEFRLKAAFDAA 68 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~---l~~~~~~v~~~~~~~~~~----------------~~~~~~l~~~~~~~ 68 (305)
.+++++.+++|+||||||||+|+.+++.+ .+....+++..+...... ...+...+-.....
T Consensus 1076 ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~ 1155 (2050)
T 3cmu_A 1076 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1155 (2050)
T ss_dssp SSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHH
Confidence 46899999999999999999999988753 366777777655432211 11222333333334
Q ss_pred HhCCCeEEEEcccccccC
Q psy5649 69 LDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 69 ~~~~~~vl~ide~d~l~~ 86 (305)
....|.+++||++..+.+
T Consensus 1156 ~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHTCCSEEEESCGGGCCC
T ss_pred HhCCCCEEEECCcccccc
Confidence 456799999999998854
No 156
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.23 E-value=6.1e-14 Score=128.83 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=55.9
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|++|+++.+ ++++.+|..+++|||++..|+.+...+.+.+++... +.+.++++|+.
T Consensus 476 ~~~~LSgGqrQrv~lA---------Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l 538 (587)
T 3qf4_A 476 GGRNFSGGQKQRLSIA---------RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIITQKI 538 (587)
T ss_dssp SSCSSCHHHHHHHHHH---------HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST-TCEEEEEESCH
T ss_pred CCCCcCHHHHHHHHHH---------HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecCh
Confidence 4568999999999999 999999999999999999999999999999988754 56777888864
No 157
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.23 E-value=5.5e-13 Score=122.80 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
..+|+|++|+++.+ ++++.+|..+++|||+++.|..+...+.+.+.+... +.+.++++|+..
T Consensus 490 ~~LSgGq~Qrv~iA---------ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~ 551 (598)
T 3qf4_B 490 EDLSQGQRQLLAIT---------RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLN 551 (598)
T ss_dssp TTSCHHHHHHHHHH---------HHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTT
T ss_pred CCCCHHHHHHHHHH---------HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH
Confidence 57999999999999 999999999999999999999999999999988753 567778888654
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.23 E-value=3.4e-11 Score=90.32 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=61.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
..+.+++|+||+|||||++|++++... +.+++ ++|+.+... ......|..+ ..++|+|||+|.+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a---~~g~l~ldei~~l~~- 90 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA---QGGTLVLSHPEHLTR- 90 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH---TTSCEEEECGGGSCH-
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc---CCcEEEEcChHHCCH-
Confidence 456679999999999999999999876 67888 999877544 1233344444 456899999998732
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecC
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTS 123 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~ 123 (305)
.....++..+.. ....+.+|++||.
T Consensus 91 --------~~q~~Ll~~l~~---~~~~~~~I~~t~~ 115 (145)
T 3n70_A 91 --------EQQYHLVQLQSQ---EHRPFRLIGIGDT 115 (145)
T ss_dssp --------HHHHHHHHHHHS---SSCSSCEEEEESS
T ss_pred --------HHHHHHHHHHhh---cCCCEEEEEECCc
Confidence 112234444422 2334567778775
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.20 E-value=1.3e-11 Score=96.13 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=51.6
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc----CCeEEEEecccccccccchHHH-HHHHHHHHHHhCCCeEEE
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM----KVHTVVIQVADMFSKFYGEAEF-RLKAAFDAALDHAPSLLL 77 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----~~~~~~v~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~vl~ 77 (305)
.+++++.++.+.+++|+||||||||||++++++.+ +.....++..++.......... ....+++. -..|.+|+
T Consensus 28 ~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lli 105 (180)
T 3ec2_A 28 VFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLV 105 (180)
T ss_dssp HHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEE
T ss_pred HHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEE
Confidence 45678888889999999999999999999999887 4455666655443221100000 00011111 23678999
Q ss_pred Eccccc
Q psy5649 78 LDNLDV 83 (305)
Q Consensus 78 ide~d~ 83 (305)
|||++.
T Consensus 106 lDE~~~ 111 (180)
T 3ec2_A 106 LDDLGS 111 (180)
T ss_dssp EETCSS
T ss_pred EeCCCC
Confidence 999874
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.19 E-value=6.4e-11 Score=89.05 Aligned_cols=58 Identities=21% Similarity=0.341 Sum_probs=46.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
+++.++|+||+|+|||||++++++.+ +...+.++..++... +....|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc
Confidence 78889999999999999999999987 566788887766543 11345789999999864
No 161
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.19 E-value=9.6e-12 Score=103.79 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHh-hhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL-DHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~ 234 (305)
...+|+|++|+++.+ ++++.++..+++|||++++|+.....+.+.+ .... .+.+.++++|+.
T Consensus 157 ~~~LSgGq~QRv~lA---------raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~ 219 (290)
T 2bbs_A 157 GITLSGGQRARISLA---------RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM 219 (290)
T ss_dssp -CCCCHHHHHHHHHH---------HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH
T ss_pred cCcCCHHHHHHHHHH---------HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH
Confidence 368999999999999 9999999999999999999999999998864 4554 356677788863
No 162
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.19 E-value=1.3e-09 Score=110.17 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=52.0
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEeccccccc----c-----------cchHHHHHHHHHHH-HH
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSK----F-----------YGEAEFRLKAAFDA-AL 69 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~----~-----------~~~~~~~l~~~~~~-~~ 69 (305)
+++++..++|+||||+|||||+..++... +..+.+++...-... . .......+....+. ..
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~ 458 (2050)
T 3cmu_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999998755 346677765432210 0 01111222222222 23
Q ss_pred hCCCeEEEEcccccccC
Q psy5649 70 DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 70 ~~~~~vl~ide~d~l~~ 86 (305)
...+.+++||.+..+.+
T Consensus 459 ~~~~~lIVIDSL~al~~ 475 (2050)
T 3cmu_A 459 SGAVDVIVVDSVAALTP 475 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hcCCcEEEECCHHHhhc
Confidence 56789999999999875
No 163
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.14 E-value=3.6e-11 Score=89.95 Aligned_cols=92 Identities=9% Similarity=0.134 Sum_probs=61.7
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNR 90 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~ 90 (305)
..+.+++|+||+|||||+++++++.... +++.++|+.+.... ....|+.+ ..++++|||+|.+..
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a---~~~~l~lDei~~l~~---- 89 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA---EGGVLYVGDIAQYSR---- 89 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT---TTSEEEEEECTTCCH----
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC---CCCeEEEeChHHCCH----
Confidence 4456799999999999999999999887 88889887654322 34445544 357999999998732
Q ss_pred chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC
Q psy5649 91 SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL 124 (305)
Q Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~ 124 (305)
. ....++..++.-. ...+.+|++||..
T Consensus 90 --~---~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 90 --N---IQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp --H---HHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred --H---HHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 1 1222344444321 2345567777753
No 164
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=4.8e-10 Score=94.37 Aligned_cols=125 Identities=9% Similarity=0.076 Sum_probs=90.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc------CCeEEEEecccccccccchHHHHHHHHHHHHHhC----CCeEEEEcccc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM------KVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDH----APSLLLLDNLD 82 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l------~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~vl~ide~d 82 (305)
...++|+||+|+|||+++++++... .+++.++++++. ......++.+++.+... ...|++|||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 5589999999999999999999863 457777876421 12234466677766543 24699999999
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHHHHH
Q psy5649 83 VLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL 159 (305)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l 159 (305)
.+.. .....++..++.. .+.+++|.+|+.+..+.+.+++ | .++++.|+..+..+.+...+
T Consensus 93 ~lt~---------~a~naLLk~LEep---~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMTQ---------QAANAFLKALEEP---PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBCH---------HHHHHTHHHHHSC---CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HhCH---------HHHHHHHHHHhCC---CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8732 1234466666642 3456667777888899999998 5 78899999999888887654
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.14 E-value=2.5e-10 Score=105.41 Aligned_cols=133 Identities=15% Similarity=0.256 Sum_probs=80.4
Q ss_pred CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhc------------------ccCCeEEEEEEecCC--CCCCccc
Q psy5649 72 APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH------------------ELQACVVLLAVTTSL--DNVDVSL 131 (305)
Q Consensus 72 ~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~~~~~i~~t~~~--~~l~~~l 131 (305)
.+.+|||||++.+. . .....+...++.-. .....+.+|+++|.. +.+++.+
T Consensus 201 ~~gvL~LDEi~~l~------~---~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l 271 (604)
T 3k1j_A 201 HKGVLFIDEIATLS------L---KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPAL 271 (604)
T ss_dssp TTSEEEETTGGGSC------H---HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHH
T ss_pred CCCEEEEechhhCC------H---HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHH
Confidence 45699999999862 1 12233444443111 112356788888875 6789999
Q ss_pred cCCCCcc---eEEEccC---CCHHHHHHHHHHHHhc-----CCCCCCHHhHHHHHHHc---CCC------cHHhHHHHHH
Q psy5649 132 RTPGRLD---QEIELPV---PSRDQRAAILHCLLTK-----VPHSLSTDQIQQVAFIT---HGF------VGGDLATLLS 191 (305)
Q Consensus 132 ~~~~r~~---~~i~~~~---p~~~~r~~i~~~~l~~-----~~~~ls~~~~~~la~~t---~g~------~~~di~~l~~ 191 (305)
++ ||. ..+.++. ........+++.+.+. ....++.+.++.+.... .|. +.+++..+++
T Consensus 272 ~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr 349 (604)
T 3k1j_A 272 RS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR 349 (604)
T ss_dssp HH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred HH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence 88 875 4555532 2344455555433221 23467887777777643 553 6899999999
Q ss_pred HHHHHHhhhhcCCCccccHHHHHHHhh
Q psy5649 192 NATSALLVETEGTGQVLSYDGVMRALD 218 (305)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 218 (305)
.+...+..+ ....++.+|+.++++
T Consensus 350 ~A~~~A~~~---~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 350 AAGDIAVKK---GKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHT---TCSSBCHHHHHHHHH
T ss_pred HHHHHHHhc---CcccccHHHHHHHHH
Confidence 887655433 334566677776664
No 166
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.13 E-value=2e-13 Score=123.55 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc-hhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS-AMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~ 235 (305)
+.++.+.+||+|++|+++.+ ++++.++..+++|||++++|..+...+.+.+.++... +.+.++++|+..
T Consensus 378 ~~~~~~~~LSGGq~QRv~iA---------raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~ 447 (538)
T 3ozx_A 378 LLESNVNDLSGGELQKLYIA---------ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447 (538)
T ss_dssp CTTSBGGGCCHHHHHHHHHH---------HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34566788999999999999 9999999999999999999999999999999988543 566778888654
No 167
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.12 E-value=3.3e-11 Score=105.63 Aligned_cols=67 Identities=31% Similarity=0.432 Sum_probs=55.7
Q ss_pred ccccchHHHHHHHHHHhhccCCCHHHHHhcCCC-CCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIK-PPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 238 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+|.|++++|+.+...+.++.++...+...... ++++++|+||||||||++|+++|+.++.+|+.++
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 468999999999999988776665554443332 4678999999999999999999999999999886
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.12 E-value=7.8e-11 Score=105.17 Aligned_cols=64 Identities=28% Similarity=0.359 Sum_probs=54.5
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC--ceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK--LNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~--~~~~~v~ 304 (305)
+...|+++.|++++++.+.+.+.+ -..+..+++++|||||||||||++|+++|++++ .+|+.|+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred hhhchhhccCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 456789999999999998887653 233666788999999999999999999999999 8998875
No 169
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.11 E-value=6.8e-13 Score=132.00 Aligned_cols=65 Identities=23% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
+..+|+||+|+++.+ +++++++..+++||+++..|..+.+.+.+++++... +.+.+++.|...+.
T Consensus 1215 G~~LSgGQrQriaiA---------RAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~-~~TvI~IAHRLsTi 1279 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIA---------RALVRNPKILLLDEATSALDTESEKVVQEALDRARE-GRTCIVIAHRLNTV 1279 (1321)
T ss_dssp SCSSCHHHHHHHHHH---------HHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS-SSEEEEECSSSSTT
T ss_pred CcccCHHHHHHHHHH---------HHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC-CCEEEEeccCHHHH
Confidence 356999999999999 999999999999999999999999999999987754 45777888865543
No 170
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.09 E-value=2.4e-12 Score=127.86 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=56.2
Q ss_pred CCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc
Q psy5649 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237 (305)
Q Consensus 164 ~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (305)
..+|+|++|+++.+ +++++++..+++|||+++.|..+.+.+.++++.... +.+.++++|+....
T Consensus 1170 ~~LSgGq~Qrv~iA---------Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~-~~tvi~isH~l~~i 1233 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIA---------RALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLSTI 1233 (1284)
T ss_dssp CSSCHHHHHHHHHH---------HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS-SSCEEEECSCTTGG
T ss_pred CccCHHHHHHHHHH---------HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecCHHHH
Confidence 57999999999999 999999999999999999999999999999987654 56778888876543
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.07 E-value=2.2e-10 Score=95.66 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=52.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCe--EEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~--~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
-+++++..++|+||||||||+|+..++...+.. ++.....+....+....+..+..+++...... +++||+++.+.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~ 195 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence 356777888999999999999999999764433 44442232222223445666666666665554 99999999886
Q ss_pred CCC
Q psy5649 86 TGR 88 (305)
Q Consensus 86 ~~~ 88 (305)
...
T Consensus 196 ~~~ 198 (331)
T 2vhj_A 196 GAA 198 (331)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 172
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.04 E-value=4e-12 Score=126.23 Aligned_cols=61 Identities=25% Similarity=0.218 Sum_probs=51.8
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (305)
+..+|+|++|+++.+ ++++.++..+++|||++.+|..+...+.++++.... +.+.++++|+
T Consensus 524 g~~LSgGq~QriaiA---------Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~ 584 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIA---------RALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIVIAHR 584 (1284)
T ss_dssp SCSSCHHHHHHHHHH---------HHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT-TSEEEEECSC
T ss_pred CCccCHHHHHHHHHH---------HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC-CCEEEEEecC
Confidence 457999999999999 999999999999999999999998888888876543 4556666664
No 173
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.03 E-value=8.4e-10 Score=110.37 Aligned_cols=118 Identities=15% Similarity=0.192 Sum_probs=86.0
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEeccccc------------ccccch----HHHHHHHHHHHHHh
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMF------------SKFYGE----AEFRLKAAFDAALD 70 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~------------~~~~~~----~~~~l~~~~~~~~~ 70 (305)
++++..+++|||||||||+|+++++.+. +-+...|+..... +++.++ .++.++.+|..|+.
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~ 1158 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1158 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHh
Confidence 6677789999999999999999998755 4455556554432 334445 89999999999999
Q ss_pred CCCeEEEEcccccccCCCC------C--chhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCC
Q psy5649 71 HAPSLLLLDNLDVLCTGRN------R--SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~ 128 (305)
..|+++++|+++.+++.+. + .....+.+++++..++...+ ...+++|+|....+.+.
T Consensus 1159 ~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLIFINQIRMKIG 1223 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEEEEECEEECTT
T ss_pred cCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEEEeccccccch
Confidence 9999999999999998721 1 12344567888888887666 45566665554445543
No 174
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.03 E-value=3.2e-11 Score=120.15 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=103.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~ 86 (305)
++.+++|+.+.|+||+|||||||++.|.+...+..+.| .+|+.|.-
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I--------------------------------~idG~~i~-- 483 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI--------------------------------TIDGVDVR-- 483 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE--------------------------------EETTEETT--
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc--------------------------------cCCCccch--
Confidence 46779999999999999999999999999999888777 55555431
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCCHHHHHHHHH-----HHHhc
Q psy5649 87 GRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILH-----CLLTK 161 (305)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~-----~~l~~ 161 (305)
+.....+..-+..+. |.+.+ ...+..+++.. |+ +..+.++-.+..+ .++..
T Consensus 484 -----~~~~~~lr~~i~~v~-----Q~~~L--f~~TI~eNI~~-----g~-------~~~~~~~v~~a~~~a~l~~~i~~ 539 (1321)
T 4f4c_A 484 -----DINLEFLRKNVAVVS-----QEPAL--FNCTIEENISL-----GK-------EGITREEMVAACKMANAEKFIKT 539 (1321)
T ss_dssp -----TSCHHHHHHHEEEEC-----SSCCC--CSEEHHHHHHT-----TC-------TTCCHHHHHHHHHHTTCHHHHHH
T ss_pred -----hccHHHHhhcccccC-----Cccee--eCCchhHHHhh-----hc-------ccchHHHHHHHHHHccchhHHHc
Confidence 001111111111111 11111 11122222211 11 1112222222221 12222
Q ss_pred -----------CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhc
Q psy5649 162 -----------VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLV 230 (305)
Q Consensus 162 -----------~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (305)
.+..+|+||+||++.+ +++.+++..+++||+++..|..+...+.+++..... +.+.+++
T Consensus 540 lp~G~~T~vGe~G~~LSGGQkQRiaiA---------RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iii 609 (1321)
T 4f4c_A 540 LPNGYNTLVGDRGTQLSGGQKQRIAIA---------RALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIII 609 (1321)
T ss_dssp STTTTSSEESSSSCCCCHHHHHHHHHH---------HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEE
T ss_pred CCCCCccEecCCCCCCCHHHHHHHHHH---------HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 3467999999999999 999999999999999999999999999999987754 4567778
Q ss_pred cCCCCC
Q psy5649 231 EVPNVK 236 (305)
Q Consensus 231 ~~~~~~ 236 (305)
+|....
T Consensus 610 aHrls~ 615 (1321)
T 4f4c_A 610 AHRLST 615 (1321)
T ss_dssp CSCTTT
T ss_pred cccHHH
Confidence 886543
No 175
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.02 E-value=2.7e-08 Score=85.40 Aligned_cols=165 Identities=15% Similarity=0.236 Sum_probs=97.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc------c---------cc-------------------------
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF------S---------KF------------------------- 53 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~------~---------~~------------------------- 53 (305)
..++|+||+|+|||+|++.+++..+ .+++++.... . ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 6899999999999999999998875 5666654321 0 00
Q ss_pred cchHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC---CC----
Q psy5649 54 YGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL---DN---- 126 (305)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~---~~---- 126 (305)
.......+..+.+.+....|.+|+|||++.+...... ........+...++. ..++.++.+.+.. ..
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~--~~~~~~~~L~~~~~~----~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR--GGKELLALFAYAYDS----LPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT--TTHHHHHHHHHHHHH----CTTEEEEEEESSHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc--chhhHHHHHHHHHHh----cCCeEEEEECCcHHHHHHHHhh
Confidence 0011111222222222234999999999987541100 011222222222222 2344455555432 11
Q ss_pred --CCccccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHH
Q psy5649 127 --VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATL 189 (305)
Q Consensus 127 --l~~~l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l 189 (305)
....+ .||+...+.+++.+..+-.+++...+......++.+....+...|.|+... +..+
T Consensus 184 ~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~-l~~~ 245 (350)
T 2qen_A 184 TDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW-LVVF 245 (350)
T ss_dssp TCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH-HHHH
T ss_pred cCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH-HHHH
Confidence 11112 236667899999999999999887766656667888888999999997643 4443
No 176
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=72.52 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=64.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 144 PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 144 ~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
|.|+..+|.+||+.++++.+.. +.-++..+|..|+||||+||..++++|...++++ ....++.+||..++.++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~---~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Confidence 6899999999999998876643 2347999999999999999999999999988876 4567889999999987754
No 177
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.97 E-value=3e-10 Score=95.37 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=35.2
Q ss_pred cCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 267 LGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 267 ~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+.++|.|++||||||||||++|+++|++++.+|+.|+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 35678899999999999999999999999999999986
No 178
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.96 E-value=1.2e-09 Score=73.39 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=65.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC
Q psy5649 143 LPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP 222 (305)
Q Consensus 143 ~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (305)
..+|+..+|.+|++.++++.+..- .-+++.+|..|+||||+||.++|++|...++++. ...++.+||..++.++.+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~-dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTR-GINLRKIAELMPGASGAEVKGVCTEAGMYALRER---RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECT-TCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---CSEECHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCc-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHcc
Confidence 468999999999998888766542 3368899999999999999999999999888763 467899999999998866
Q ss_pred c
Q psy5649 223 S 223 (305)
Q Consensus 223 ~ 223 (305)
.
T Consensus 84 ~ 84 (86)
T 2krk_A 84 K 84 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 179
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.96 E-value=8.7e-12 Score=114.34 Aligned_cols=69 Identities=30% Similarity=0.294 Sum_probs=58.8
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
+.++.+.+||+|++|+++.+ ++++.++..+++|||++++|..+...+.+.++++.. .+.+.++++|+..
T Consensus 464 ~~~~~~~~LSGGe~QRv~iA---------raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 533 (607)
T 3bk7_A 464 LYDRNVEDLSGGELQRVAIA---------ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 533 (607)
T ss_dssp TTTSBGGGCCHHHHHHHHHH---------HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred HhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34556778999999999999 999999999999999999999999999999998753 3567778888643
No 180
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.93 E-value=3.6e-08 Score=84.83 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=93.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc-----c--cccch------------------------------
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF-----S--KFYGE------------------------------ 56 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~-----~--~~~~~------------------------------ 56 (305)
..++|+||+|+|||+|++.+++......+++++.... . .....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 5899999999999999999999887777888876430 0 00000
Q ss_pred ---------HHHHHHHHHHHHHhC--CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC
Q psy5649 57 ---------AEFRLKAAFDAALDH--APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD 125 (305)
Q Consensus 57 ---------~~~~l~~~~~~~~~~--~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~ 125 (305)
....+..+++..... .|.+|+|||++.+...... .....+..+ .+. ..++.+|.+++...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~--~~~~~l~~~---~~~----~~~~~~i~~g~~~~ 181 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV--NLLPALAYA---YDN----LKRIKFIMSGSEMG 181 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC--CCHHHHHHH---HHH----CTTEEEEEEESSHH
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch--hHHHHHHHH---HHc----CCCeEEEEEcCchH
Confidence 011233444444432 4899999999987642111 111222222 221 22455555555422
Q ss_pred CCCcc-------ccCCCCcceEEEccCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcH
Q psy5649 126 NVDVS-------LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183 (305)
Q Consensus 126 ~l~~~-------l~~~~r~~~~i~~~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~ 183 (305)
.+... -.-.+|+...+.+++.+..+..+++...+...+...+. ...+...|.|+..
T Consensus 182 ~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~--~~~i~~~t~G~P~ 244 (357)
T 2fna_A 182 LLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD--YEVVYEKIGGIPG 244 (357)
T ss_dssp HHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--HHHHHHHHCSCHH
T ss_pred HHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHhCCCHH
Confidence 11110 00123556789999999999999988765433333333 3777888888754
No 181
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.91 E-value=6.8e-11 Score=108.26 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 158 LLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 158 ~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
+.++.+.+||+|++|+++.+ ++++.++..+++|||++++|..+...+.+.+.++.. .+.+.++++|+..
T Consensus 460 ~~~~~~~~LSGGqkQRv~iA---------raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 IIDQEVQHLSGGELQRVAIV---------LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp TSSSBSSSCCHHHHHHHHHH---------HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred hhcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45567889999999999999 999999999999999999999999999999988753 4667788888643
No 182
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.91 E-value=2.5e-11 Score=110.06 Aligned_cols=68 Identities=29% Similarity=0.282 Sum_probs=58.3
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCC-chhhhhhccCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKP-SAMRQVLVEVPNV 235 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 235 (305)
.++.+..||+|++|+++.+ ++++.++..+++|||++++|..+...+.+.+.++.. .+.+.++++|+..
T Consensus 395 ~~~~~~~LSGGe~qrv~lA---------raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~ 463 (538)
T 1yqt_A 395 YDREVNELSGGELQRVAIA---------ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL 463 (538)
T ss_dssp TTSBGGGCCHHHHHHHHHH---------HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred hcCChhhCCHHHHHHHHHH---------HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4556778999999999999 999999999999999999999999999999998753 3567778888643
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.89 E-value=1e-09 Score=92.81 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=54.0
Q ss_pred cccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCc---ceeeecCCCchHHHHHHHHhhhcCc-------eeEEee
Q psy5649 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPR---GILMFGPPGCSKTMIAKALATESKL-------NFISVK 304 (305)
Q Consensus 237 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---gill~GppG~GKT~la~~lA~~~~~-------~~~~v~ 304 (305)
+.++.|++.+++.+.+.+.++. .+..+.++|+..+. +++|+||||||||++|+++|++++. +|+.|+
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 106 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT 106 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc
Confidence 3378999999999999888754 36667777776554 3999999999999999999999843 677654
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=1.7e-09 Score=97.95 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=54.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhc-cCCCHHHHHhcCCC---CCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEW-PLKHPEAFARLGIK---PPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~-~~~~~~~~~~~~~~---~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+....|+++.|.+.+++.+.+.+.. ...++..+...+.. ++.+++|+||||||||++|+++|++++.+++.++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 4556799999999999988887652 21111222222332 4568999999999999999999999999999875
No 185
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.82 E-value=3.8e-10 Score=86.99 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=45.3
Q ss_pred CHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccc----------------cHHHHHHHhhhcCCchhhhhhc
Q psy5649 167 STDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVL----------------SYDGVMRALDHVKPSAMRQVLV 230 (305)
Q Consensus 167 s~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~~~~~~~~~~~ 230 (305)
++++.|+++.+ +++..++..+++|||++..|.. ....+.+.+..++..+.+.+++
T Consensus 85 s~g~~qrv~iA---------ral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~v 155 (171)
T 4gp7_A 85 ESARKPLIEMA---------KDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYI 155 (171)
T ss_dssp HHHHHHHHHHH---------HHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEE
T ss_pred HHHHHHHHHHH---------HHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEE
Confidence 55678888888 7888888888889998888776 4467777777776556777888
Q ss_pred cCCCC
Q psy5649 231 EVPNV 235 (305)
Q Consensus 231 ~~~~~ 235 (305)
+|+..
T Consensus 156 tH~~~ 160 (171)
T 4gp7_A 156 LNSPE 160 (171)
T ss_dssp ECSHH
T ss_pred eCCHH
Confidence 88643
No 186
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.79 E-value=1.8e-08 Score=68.15 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCc
Q psy5649 147 SRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223 (305)
Q Consensus 147 ~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (305)
+..+|.+|++.++++.+..-+ -+++.+|..|+||||+||.++|++|...++++ ....++.+||..++.++.++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~d-vdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~---~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERG-IRWELISRLCPNSTGAELRSVCTEAGMFAIRA---RRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSC-CCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH---SCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCc-cCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---ccccCCHHHHHHHHHHHhcC
Confidence 456899999988888775533 37999999999999999999999999988877 34568999999999998765
No 187
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.79 E-value=3.4e-09 Score=91.83 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHHhhccCCCHHHHH-hcCC-CCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 240 IGGQDEVKLKLRQSVEWPLKHPEAFA-RLGI-KPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 240 i~g~~~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.|++.+++.+...+........... .... .++.+++|+||||||||++|+++|..++.+|+.++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 67889999888877643221111000 0011 24567999999999999999999999999999885
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.78 E-value=8.8e-09 Score=81.48 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=44.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccccchH-HHHHHHHHHHHHhCCCeEEEEccccccc
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKFYGEA-EFRLKAAFDAALDHAPSLLLLDNLDVLC 85 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~vl~ide~d~l~ 85 (305)
.+++|+||+|||||++++++++.+ +..+..+++.++........ ...+...+.... .+.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 789999999999999999999877 56777787765532211100 000122222222 23599999997643
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.78 E-value=1.3e-08 Score=87.22 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=51.6
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....|+++.|.+.+++.+...+..... .-..+..++|+||||||||++|+++|.+++.+|+.++
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 445799999999999998887664211 1124557999999999999999999999999998875
No 190
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.77 E-value=7.4e-09 Score=90.11 Aligned_cols=65 Identities=23% Similarity=0.278 Sum_probs=48.2
Q ss_pred cccchHHHHHHHHHHhhccCCCHHH------------------HHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCcee
Q psy5649 239 DIGGQDEVKLKLRQSVEWPLKHPEA------------------FARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300 (305)
Q Consensus 239 ~i~g~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~ 300 (305)
.|.|++.+++.+...+.+..++... ... .-..+.+++|+||||||||++|+++|..++.+|
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4679999999988876543322221 111 123455699999999999999999999999999
Q ss_pred EEee
Q psy5649 301 ISVK 304 (305)
Q Consensus 301 ~~v~ 304 (305)
+.++
T Consensus 101 ~~~~ 104 (376)
T 1um8_A 101 AISD 104 (376)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9875
No 191
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.76 E-value=4.5e-10 Score=107.07 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=56.2
Q ss_pred HhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCC
Q psy5649 159 LTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVK 236 (305)
Q Consensus 159 l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (305)
.++.+..||+|++|+++.+ +.++.++..+++|||++++|..+...+.+.+..+. .+.++++|+...
T Consensus 895 ~~~~~~~LSGGQkQRVaLA---------rAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g---~tVIiISHD~e~ 960 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLA---------AGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFE---GGVIIITHSAEF 960 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHH---------HHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCS---SEEEEECSCHHH
T ss_pred cCCCccccCHHHHHHHHHH---------HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhC---CEEEEEECCHHH
Confidence 3556778999999999999 99999999999999999999999999999988773 367778886443
No 192
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.76 E-value=4.2e-09 Score=82.79 Aligned_cols=126 Identities=14% Similarity=0.186 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhh--------cC-CeEEEEeccccccccc----------chHHH--HHHHHHHHH--Hh
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASH--------MK-VHTVVIQVADMFSKFY----------GEAEF--RLKAAFDAA--LD 70 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~--------l~-~~~~~v~~~~~~~~~~----------~~~~~--~l~~~~~~~--~~ 70 (305)
..++++|+||||||+++..+... .+ .+++..++.++..... ..... ....+++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36789999999999998876433 23 5555666655532211 00000 112233332 23
Q ss_pred CCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEccCCC
Q psy5649 71 HAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPS 147 (305)
Q Consensus 71 ~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~~p~ 147 (305)
...+||+|||++.+++.+.......+ ++..+.... ...+-+|.+++.++.++..++. |+...+.++.|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~r----ll~~l~~~r--~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPE----NVQWLNTHR--HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCH----HHHGGGGTT--TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhHH----HHHHHHhcC--cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 45789999999999765422111111 333333222 2334456677778999999887 888888877653
No 193
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.75 E-value=2.2e-08 Score=67.04 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCch
Q psy5649 147 SRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSA 224 (305)
Q Consensus 147 ~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (305)
+..+|.+||+.++++.+.. ++-++..+|..|+||||+||..+|++|...++++ ....++.+||..++.+++|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~---~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRE---NRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS---CCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCCcCHHHHHHHHHHHccCc
Confidence 6789999999998877654 2336899999999999999999999999888765 345788999999999998874
No 194
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.74 E-value=1e-07 Score=73.67 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
.++|+||||||||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886443
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.73 E-value=2.9e-08 Score=77.31 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
++++.++++++|||||||||++.++++.+.-..
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 366777899999999999999999999886443
No 196
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.73 E-value=4.4e-09 Score=88.88 Aligned_cols=65 Identities=32% Similarity=0.458 Sum_probs=47.8
Q ss_pred ccccchHHHHHHHHHHhhccCCCH---HHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 238 SDIGGQDEVKLKLRQSVEWPLKHP---EAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 238 ~~i~g~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+++.|.+.+++.+...+..+..+. ..+.. -..+.+++|+||||||||++|+++|..++.+|+.|+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRH--EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHH--HCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccc--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 357899999988887765432111 11111 124567999999999999999999999999999875
No 197
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.71 E-value=1.7e-08 Score=87.48 Aligned_cols=64 Identities=25% Similarity=0.307 Sum_probs=48.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCc--eeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL--NFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~--~~~~v~ 304 (305)
+...|+++.|.+..++.+...... +. .+..++.+++|+||||||||++|+++|.+++. +|+.++
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 344599999999998877655432 22 24445678999999999999999999999974 666553
No 198
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.69 E-value=1.3e-09 Score=101.93 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=56.3
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH---HHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT---SALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
++.+.+||+|++|+++.+ ++++.++. .+++|||++++|+.....+.+.+.+++..+.+.++++|+.
T Consensus 538 ~~~~~~LSgG~~qrv~iA---------raL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLA---------AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp TCCGGGCCHHHHHHHHHH---------HHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCchhCCHHHHHHHHHH---------HHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 345678999999999999 88888764 7888999999999999999999998876677788888864
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.69 E-value=1.3e-07 Score=75.58 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccc
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD 48 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~ 48 (305)
+++++..++|+||||+||||+++.++...+...+.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5899999999999999999999999985566777777654
No 200
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.67 E-value=1e-07 Score=77.82 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=25.1
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHH
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLA 34 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la 34 (305)
++++++.++|+||||||||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999999999998
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.66 E-value=9.1e-09 Score=88.81 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=71.1
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccccccchHHHHHHHHHHHHHhCCCeEEEEcccccccC-
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCT- 86 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~- 86 (305)
+++++++.++|+|||||||||+++++++..+...+.+.... ......+. ......++++||++....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~------~~~~~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL------DRLNFELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT------TTHHHHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc------hhHHHHHH------HhcchhHHHHHHHHHHHHH
Confidence 58899999999999999999999999998876554432211 00011111 223445679999998764
Q ss_pred CCCCc-hhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEEEcc
Q psy5649 87 GRNRS-DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELP 144 (305)
Q Consensus 87 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i~~~ 144 (305)
.+... .........+...++ +.+.++.++|+++.+ +++.++++++..+...
T Consensus 232 ~r~l~~~~~~~~~~~l~~~ld------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 232 SRDLPSGQGINNLDNLRDYLD------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TTTCCCCSHHHHHHTTHHHHH------CSSCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred HhhccccCcchHHHHHHHHhc------CCCeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 22110 011001122223332 223467778999988 6777777876655443
No 202
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.66 E-value=1.4e-08 Score=84.20 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=35.6
Q ss_pred HHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 264 FARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 264 ~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+...+..++.+++|+||||||||++|+++|.+++.+|+.++
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 44445667788999999999999999999999999999874
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.64 E-value=5.5e-08 Score=82.80 Aligned_cols=61 Identities=23% Similarity=0.147 Sum_probs=50.6
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+....++++.|.+++++.+...+.. -..+..++++||||||||++|+++|++++.+|+.++
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4556789999999999888877651 234566899999999999999999999999998875
No 204
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.64 E-value=2.5e-07 Score=75.11 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=52.4
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhh--c-------CCeEEEEeccccccc---------------------------
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASH--M-------KVHTVVIQVADMFSK--------------------------- 52 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~--l-------~~~~~~v~~~~~~~~--------------------------- 52 (305)
+++++..++|+||||+|||||++.++.. + +...++++.......
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6789999999999999999999999984 3 345677766541000
Q ss_pred ccchHHHHHHHHHHHHHhCCCeEEEEcccccccCC
Q psy5649 53 FYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 53 ~~~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
...+....+..+........|.+++||++..++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00011112233344444578999999999887643
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.63 E-value=3.4e-08 Score=89.82 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=49.4
Q ss_pred CCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCC-CCcceeeecCCCchHHHHHHHHhhhcCceeEEeeC
Q psy5649 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIK-PPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305 (305)
Q Consensus 235 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~~ 305 (305)
..++++.|++++++.+.+.... ..+.+. ++..++|+||||||||++|+++|+.++.+|+.|++
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l--------~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHH--------HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHhccHHHHHHHHHHHHHH--------HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 3467799999999988776542 222332 34459999999999999999999999999998863
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.63 E-value=3e-08 Score=83.69 Aligned_cols=71 Identities=23% Similarity=0.419 Sum_probs=43.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcC----CeEEEEecccccccccch-HHHHHHHHHHHHHhCCCeEEEEcccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMK----VHTVVIQVADMFSKFYGE-AEFRLKAAFDAALDHAPSLLLLDNLDVL 84 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~----~~~~~v~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~vl~ide~d~l 84 (305)
.+.+++|+||+|||||+|+++++..+. ..+..+++.++....... ....+...+... ..+.+|+|||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 367999999999999999999998654 667777766543221110 000111122222 23459999999654
No 207
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.61 E-value=5.1e-08 Score=82.90 Aligned_cols=64 Identities=31% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....|+++.|.+..+..+...+... ... -..+..++|+||||||||++|+++|.+++.+|+.++
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~-------~~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAA-------KAR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHH-------HHH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEEC
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHH-------Hcc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 4457889999999988888776531 111 124567999999999999999999999999998764
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.60 E-value=2.1e-07 Score=74.98 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=27.4
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
++++++.+.|+||||||||||++.+++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999999998553
No 209
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.58 E-value=1.1e-09 Score=97.21 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=40.4
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHH--HHHHHHH----HHhhh-hcCCCccccHHHHHHHhhhc
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLAT--LLSNATS----ALLVE-TEGTGQVLSYDGVMRALDHV 220 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~--l~~~~~~----~~~~~-~~~~~~~~~~~~~~~~l~~~ 220 (305)
+..+|+++.|+++.+ ++ ++.++.. +++|| |+.++|.. .+.+.+.++.+
T Consensus 233 ~~~LSgGq~qrlalA---------ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~ 287 (460)
T 2npi_A 233 NKDLYLECISQLGQV---------VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL 287 (460)
T ss_dssp CHHHHHHHHHHHHHH---------HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHH---------HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh
Confidence 456889999999999 88 9999999 99999 99988887 66677776665
No 210
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.57 E-value=1.1e-07 Score=74.10 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=44.7
Q ss_pred CCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc----------CceeEEe
Q psy5649 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES----------KLNFISV 303 (305)
Q Consensus 234 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~----------~~~~~~v 303 (305)
...++++.|.++..+.+.+.+.. ..+.+++|+||||||||++|+++|.++ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34578888888877777665432 235679999999999999999999986 6777665
Q ss_pred e
Q psy5649 304 K 304 (305)
Q Consensus 304 ~ 304 (305)
+
T Consensus 85 ~ 85 (195)
T 1jbk_A 85 D 85 (195)
T ss_dssp C
T ss_pred e
Confidence 4
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.57 E-value=2.5e-08 Score=81.95 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=53.8
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCe-EEEE--ecccc---ccc--------ccchHHHHHHHHHHHH
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH-TVVI--QVADM---FSK--------FYGEAEFRLKAAFDAA 68 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~-~~~v--~~~~~---~~~--------~~~~~~~~l~~~~~~~ 68 (305)
.+++++.++++..++|+||+||||||+++++++.+.+. .+.+ ....+ ... ..+.....++..+..+
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~a 94 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAA 94 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHH
Confidence 45677778899999999999999999999999987543 2222 21111 000 0000112346677777
Q ss_pred HhCCCeEEEEcccc
Q psy5649 69 LDHAPSLLLLDNLD 82 (305)
Q Consensus 69 ~~~~~~vl~ide~d 82 (305)
....|.++++||.-
T Consensus 95 L~~~p~illlDEp~ 108 (261)
T 2eyu_A 95 LREDPDVIFVGEMR 108 (261)
T ss_dssp HHHCCSEEEESCCC
T ss_pred HhhCCCEEEeCCCC
Confidence 77899999999974
No 212
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.57 E-value=8.2e-08 Score=74.41 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=26.6
Q ss_pred HhcCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 265 ARLGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 265 ~~~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
..+.+..+.+++|+||||||||+|++++|+.+
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444556779999999999999999999877
No 213
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.56 E-value=8.5e-08 Score=84.97 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=47.0
Q ss_pred CCCCcccccchHHHH---HHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 233 PNVKWSDIGGQDEVK---LKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
....++++.|.++++ ..+...+.. - ...+++|+||||||||++|+++|+.++.+|+.++
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~----------~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA----------G---HLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH----------T---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc----------C---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 445788999999888 555555442 1 1256999999999999999999999999999875
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.55 E-value=1.2e-07 Score=81.06 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=45.1
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
....++++.|.+.+++.+...+.... .. + .++..++|+|||||||||||+++|++++.++..+
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~-----~~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~ 82 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAK-----MR--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 82 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHH-----HH--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHH-----hc--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34467777788888777766554210 01 1 2345699999999999999999999998877543
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.54 E-value=1.2e-07 Score=73.54 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=44.4
Q ss_pred CCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc----------CceeEEe
Q psy5649 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES----------KLNFISV 303 (305)
Q Consensus 234 ~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~----------~~~~~~v 303 (305)
...++++.|.+...+.+.+.+.. ..+.+++|+||||||||++|+++|.++ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 34577888888877776665431 234569999999999999999999987 7777765
Q ss_pred e
Q psy5649 304 K 304 (305)
Q Consensus 304 ~ 304 (305)
+
T Consensus 85 ~ 85 (187)
T 2p65_A 85 D 85 (187)
T ss_dssp C
T ss_pred e
Confidence 4
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.54 E-value=9.2e-08 Score=81.66 Aligned_cols=53 Identities=26% Similarity=0.296 Sum_probs=42.9
Q ss_pred cccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 237 ~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.+++.|.+++++.+...+.. +.+++|+||||||||++|+++|+.++.+|+.|.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 45677888888776655431 247999999999999999999999999998875
No 217
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.53 E-value=1.9e-08 Score=74.95 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 240 IGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 240 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
+.|.+...+.+.+.+.. +. ..+..++|+||||||||++|++++.+++ +|+.|+
T Consensus 6 ~iG~s~~~~~l~~~~~~-------~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 6 KLGNSAAIQEMNREVEA-------AA----KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp --CCCHHHHHHHHHHHH-------HH----TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred ceeCCHHHHHHHHHHHH-------Hh----CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 44555555555555432 11 2345699999999999999999999988 888765
No 218
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.52 E-value=6.5e-09 Score=98.94 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=57.2
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH--HHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT--SALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+...+||+|+.|+++.+ ++|+.++. .+++|||++++++...+.+.+.+++++..+.+.++++|+.
T Consensus 460 r~~~~LSGGe~QRv~LA---------raL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~ 526 (916)
T 3pih_A 460 RSATTLSGGESQRIRLA---------TQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE 526 (916)
T ss_dssp SBGGGCCHHHHHHHHHH---------HHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCH
T ss_pred CCcccCCHHHHHHHHHH---------HHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34567999999999999 88888766 7888999999999999999999999988788888999964
No 219
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.50 E-value=1.8e-06 Score=73.83 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=52.2
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccc----------------cccchHHHHHHHHHHHHH
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFS----------------KFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~----------------~~~~~~~~~l~~~~~~~~ 69 (305)
+++++..++|+||||||||||+..++... +....+++...... ......+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 57889999999999999999999998764 44566676544211 011122333322222333
Q ss_pred hCCCeEEEEcccccccC
Q psy5649 70 DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 70 ~~~~~vl~ide~d~l~~ 86 (305)
...+.+++||.+..+++
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 46788999999987775
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.48 E-value=1.1e-06 Score=70.67 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEe
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQ 45 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~ 45 (305)
+++++..++|+||||||||||++.+++.. +.....++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 57899999999999999999999999654 33444443
No 221
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.47 E-value=6.1e-08 Score=83.76 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=53.6
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHH------HHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLL------SNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+|+.|+++.+ .+++ .++..+++|||++++|+.....+.+.+..+...+.+.++++|+.
T Consensus 276 ~~~~LSgGe~qr~~la---------~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 276 PARGLSGGERALISIS---------LAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp EGGGSCHHHHHHHHHH---------HHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred CchhCCHHHHHHHHHH---------HHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 3457999999999988 7776 46677788999999999999999999999876677888888864
No 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.46 E-value=1e-07 Score=71.07 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=27.8
Q ss_pred CcceeeecCCCchHHHHHHHHhhhc---CceeEEee
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATES---KLNFISVK 304 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~---~~~~~~v~ 304 (305)
+..++|+||||||||++|++++..+ +.+|+ |+
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~ 58 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR 58 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE
Confidence 4569999999999999999999987 67887 64
No 223
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.45 E-value=9.5e-08 Score=84.21 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCHHhHHHHHHHcCCCcHHhHHHHHHHH--HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 166 LSTDQIQQVAFITHGFVGGDLATLLSNA--TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 166 ls~~~~~~la~~t~g~~~~di~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+|+|++++++.+ ..++.++ ..+++|||++++|......+.+.+..+. .+.+.++++|..
T Consensus 296 lSgGe~qrl~lA---------~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~ 356 (415)
T 4aby_A 296 ASGGELSRVMLA---------VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA 356 (415)
T ss_dssp SCHHHHHHHHHH---------HHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred cCHhHHHHHHHH---------HHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence 799999999999 7888888 8888999999999999999999999987 466777788863
No 224
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.45 E-value=4.9e-06 Score=71.85 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=91.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe--EEEEecccccccccchHHHHH---------------HHHHHHHHhCCCeE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMFSKFYGEAEFRL---------------KAAFDAALDHAPSL 75 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~--~~~v~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~~v 75 (305)
...++++|++||||+++++++....+.. ++.++|+.+.... .+..+ ...|+.| ....
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~---~~~~lfg~~~g~~tga~~~~~g~~~~a---~~gt 225 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL---AESELFGHEKGAFTGALTRKKGKLELA---DQGT 225 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT---HHHHHHEECSCSSSSCCCCEECHHHHT---TTSE
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH---HHHHhcCccccccCCcccccCChHhhc---CCCe
Confidence 4469999999999999999998766443 9999998764321 11111 0123322 3358
Q ss_pred EEEcccccccCCCCCchhHHHHHHHHHHHHhhhc-----c---cCCeEEEEEEecCCCCCCccccCCCCcc---------
Q psy5649 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH-----E---LQACVVLLAVTTSLDNVDVSLRTPGRLD--------- 138 (305)
Q Consensus 76 l~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~-----~---~~~~~~~i~~t~~~~~l~~~l~~~~r~~--------- 138 (305)
|||||++.+.. .....++..++.-. . ..-.+.+|++||. ++...+ ..|+|.
T Consensus 226 lfldei~~l~~---------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~--~l~~~v-~~g~fr~dL~~rl~~ 293 (368)
T 3dzd_A 226 LFLDEVGELDQ---------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNK--NLEEEI-KKGNFREDLYYRLSV 293 (368)
T ss_dssp EEEETGGGSCH---------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESS--CHHHHH-HTTSSCHHHHHHHTS
T ss_pred EEecChhhCCH---------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCC--CHHHHH-HcCCccHHHHHHhCC
Confidence 99999998732 22233444444211 1 1124567888874 222222 223442
Q ss_pred eEEEccCCCH--HHHHHHHHHHHhc-------CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHH
Q psy5649 139 QEIELPVPSR--DQRAAILHCLLTK-------VPHSLSTDQIQQVAFITHGFVGGDLATLLSNAT 194 (305)
Q Consensus 139 ~~i~~~~p~~--~~r~~i~~~~l~~-------~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~ 194 (305)
..+.+|+... ++...+.++++++ ....++.+.++.+....-.=+.+++.+++..+.
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 2566666554 4555666655543 234578877776663322223455555555553
No 225
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.44 E-value=1.3e-07 Score=81.32 Aligned_cols=52 Identities=35% Similarity=0.482 Sum_probs=39.6
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
+...|+++.|.+.+++.+......+ ...+++|+||||||||++|+++|..++
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 5567999999998776544332211 123599999999999999999999886
No 226
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.44 E-value=1.4e-06 Score=74.76 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=33.9
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcC---------CeEEEEeccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMK---------VHTVVIQVAD 48 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~---------~~~~~v~~~~ 48 (305)
.+++++..+.|+||||||||||++.++.... -..++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 6889999999999999999999999998862 2446676543
No 227
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.42 E-value=8.1e-06 Score=71.04 Aligned_cols=180 Identities=18% Similarity=0.189 Sum_probs=98.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcC---CeEEEEecccccccccchHHHHH---------------HHHHHHHHhCCC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVADMFSKFYGEAEFRL---------------KAAFDAALDHAP 73 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~---~~~~~v~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~ 73 (305)
....++++|++||||+++++.+..... .+++.++|+.+.... .+..+ ...|+.| ..
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~---~~~elfg~~~g~~tga~~~~~g~~~~a---~~ 232 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI---FEAELFGYEKGAFTGAVSSKEGFFELA---DG 232 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH---HHHHHHCBCTTSSTTCCSCBCCHHHHT---TT
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH---HHHHhcCCCCCCCCCcccccCCceeeC---CC
Confidence 345689999999999999999987654 689999998764211 01000 0112222 24
Q ss_pred eEEEEcccccccCCCCCchhHHHHHHHHHHHHhhh-----cc---cCCeEEEEEEecCCCCCCccccCCCCcc-------
Q psy5649 74 SLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL-----HE---LQACVVLLAVTTSLDNVDVSLRTPGRLD------- 138 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~-----~~---~~~~~~~i~~t~~~~~l~~~l~~~~r~~------- 138 (305)
+.|||||++.+.. .....++..++.- .. ....+.+|++||..- ...+ ..|+|.
T Consensus 233 gtlfldei~~l~~---------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l--~~~~-~~g~fr~dl~~rl 300 (387)
T 1ny5_A 233 GTLFLDEIGELSL---------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI--KELV-KEGKFREDLYYRL 300 (387)
T ss_dssp SEEEEESGGGCCH---------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH--HHHH-HTTSSCHHHHHHH
T ss_pred cEEEEcChhhCCH---------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH--HHHH-HcCCccHHHHHhh
Confidence 6999999998732 2223344444321 11 123566788887521 1111 123332
Q ss_pred --eEEEccCCCH--HHHHHHHHHHHhc----C---CCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCcc
Q psy5649 139 --QEIELPVPSR--DQRAAILHCLLTK----V---PHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQV 207 (305)
Q Consensus 139 --~~i~~~~p~~--~~r~~i~~~~l~~----~---~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~ 207 (305)
..+.+|+... ++...+.++++++ . ...++.+.++.+....-.-+.+++++++..+.... ....
T Consensus 301 ~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~------~~~~ 374 (387)
T 1ny5_A 301 GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS------EGKF 374 (387)
T ss_dssp TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC------CSSE
T ss_pred cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC------CCCc
Confidence 2345444332 4444555555432 2 23477877777664432234557777777765532 1234
Q ss_pred ccHHHHHH
Q psy5649 208 LSYDGVMR 215 (305)
Q Consensus 208 ~~~~~~~~ 215 (305)
++.+++..
T Consensus 375 i~~~~l~~ 382 (387)
T 1ny5_A 375 IDRGELSC 382 (387)
T ss_dssp ECHHHHHH
T ss_pred CcHHHCcH
Confidence 55555543
No 228
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.42 E-value=4.4e-07 Score=72.36 Aligned_cols=52 Identities=37% Similarity=0.438 Sum_probs=41.1
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
++...++++.|.+..++.+.+.+... ....++|+||||||||++|++++.++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34567888999999888888766521 12249999999999999999999875
No 229
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.41 E-value=3.1e-07 Score=82.08 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=46.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc----------CceeEE
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES----------KLNFIS 302 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~----------~~~~~~ 302 (305)
....++++.|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+ +.+|+.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 345688899999888887766542 233468999999999999999999996 777877
Q ss_pred ee
Q psy5649 303 VK 304 (305)
Q Consensus 303 v~ 304 (305)
++
T Consensus 242 l~ 243 (468)
T 3pxg_A 242 LD 243 (468)
T ss_dssp C-
T ss_pred ee
Confidence 65
No 230
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.41 E-value=2.7e-09 Score=101.45 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=85.4
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH--HHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCc-
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSN--ATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW- 237 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 237 (305)
+....||+|+.|+++.+ .++..+ +..+++|||+.++++...+.+.+.+++++..+.+.++++|+...+
T Consensus 517 r~~~tLSGGEkQRV~LA---------~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~ 587 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLA---------TQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE 587 (993)
T ss_dssp CBGGGCCHHHHHHHHHH---------HHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH
T ss_pred CCcccCCHHHHHHHHHH---------HHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 34567999999999998 787776 367888999999999999999999999987788888999975322
Q ss_pred -----ccc--------------cchHHHHH---HHH-HHhh------ccCCC---------------HHHHHhcCCCCCc
Q psy5649 238 -----SDI--------------GGQDEVKL---KLR-QSVE------WPLKH---------------PEAFARLGIKPPR 273 (305)
Q Consensus 238 -----~~i--------------~g~~~~~~---~l~-~~~~------~~~~~---------------~~~~~~~~~~~~~ 273 (305)
-++ |..+++.+ .+. ..+. .|... ...++++.+..+.
T Consensus 588 ~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt~~~l~g~~~~~~~~~~~~~~~~~~L~v~~l~~~~Lk~Vsl~I~~ 667 (993)
T 2ygr_A 588 HADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEIPAIRRSVDPRRQLTVVGAREHNLRGIDVSFPL 667 (993)
T ss_dssp TCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTCHHHHHHHTSSCCCCCSSCCCCCSSSEEEEEEECSTTCCSEEEEEES
T ss_pred hCCEEEEecCccccCCCEEEEeeCHHHhhhhhHHHHHHHhccCccccCccccccCCCCceEEEecCccccccCceEEECC
Confidence 122 12333332 111 1110 11100 0124455556666
Q ss_pred c--eeeecCCCchHHHHHHHH
Q psy5649 274 G--ILMFGPPGCSKTMIAKAL 292 (305)
Q Consensus 274 g--ill~GppG~GKT~la~~l 292 (305)
| +.+.|+||+|||||++.+
T Consensus 668 GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 668 GVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SSEEEEECSTTSSHHHHHTTT
T ss_pred CCEEEEEcCCCCCHHHHHHHH
Confidence 7 899999999999999985
No 231
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.41 E-value=4e-08 Score=93.62 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=56.1
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH---HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA---TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+....||+|+.|+++.+ ++|+.++ ..+++|||++++|....+.+.+.++++...+.+.++++|+.
T Consensus 800 gq~~~~LSGGErQRV~LA---------raL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL 868 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLA---------SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868 (916)
T ss_dssp TCCSTTCCHHHHHHHHHH---------HHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCccCCCHHHHHHHHHH---------HHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 345678999999999998 8887765 57888999999999999999999998876677888898864
No 232
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.40 E-value=3.1e-09 Score=100.25 Aligned_cols=125 Identities=20% Similarity=0.263 Sum_probs=86.0
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH--HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcc
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA--TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWS 238 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (305)
+....||+++.|+++.+ ..|..++ ..+++|||++++++...+.+.+.++.++..+.+.++++|+...+.
T Consensus 375 r~~~tLSGGe~QRV~LA---------~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~ 445 (842)
T 2vf7_A 375 RSTPTLSPGELQRLRLA---------TQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR 445 (842)
T ss_dssp CBGGGSCHHHHHHHHHH---------HHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT
T ss_pred CCcCcCCHHHHHHHHHH---------HHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 34557999999999999 8888877 378889999999999999999999999887888889999653221
Q ss_pred ------cc-------cc-------hHHHHH----HHHHHhhc----cCC---C-----------HHHHHhcCCCCCcc--
Q psy5649 239 ------DI-------GG-------QDEVKL----KLRQSVEW----PLK---H-----------PEAFARLGIKPPRG-- 274 (305)
Q Consensus 239 ------~i-------~g-------~~~~~~----~l~~~~~~----~~~---~-----------~~~~~~~~~~~~~g-- 274 (305)
++ +| .+++.+ .....+.. +.. . ...++++.++.+.|
T Consensus 446 ~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~v~~l~~~~L~~vsl~i~~Gei 525 (842)
T 2vf7_A 446 RADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQYLFADRHTEPHTPREPAGWLELNGVTRNNLDNLDVRFPLGVM 525 (842)
T ss_dssp TCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHHHHHTCCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEESSSE
T ss_pred hCCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHHHhhhcccccccccCCCCceEEEEeeeecccccceEEEcCCCE
Confidence 12 11 122211 00111110 000 0 01245556666777
Q ss_pred eeeecCCCchHHHHHHH-Hhh
Q psy5649 275 ILMFGPPGCSKTMIAKA-LAT 294 (305)
Q Consensus 275 ill~GppG~GKT~la~~-lA~ 294 (305)
+.+.|+||+|||||++. |++
T Consensus 526 v~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 526 TSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEECCTTSSHHHHCCCCCHH
T ss_pred EEEEcCCCcCHHHHHHHHHHH
Confidence 89999999999999996 654
No 233
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.38 E-value=2.8e-06 Score=73.92 Aligned_cols=102 Identities=21% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhh--c-------CCeEEEEeccccccc--------cc-----------------
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASH--M-------KVHTVVIQVADMFSK--------FY----------------- 54 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~--l-------~~~~~~v~~~~~~~~--------~~----------------- 54 (305)
+++++..++|+||||||||||++.++-. . +...++++....... ..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 7889999999999999999999977532 2 234667765442110 00
Q ss_pred --chHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCc----hhHHHHHHHHHHHHhhhcc
Q psy5649 55 --GEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRS----DQERRLLSCLVTQVDRLHE 110 (305)
Q Consensus 55 --~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~----~~~~~~~~~l~~~~~~~~~ 110 (305)
......+..+........|.+++||++-.++...... ....+.+..++..+..+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lak 315 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLAD 315 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 0111222333344445779999999998877543221 2223334555555555543
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.38 E-value=3.3e-07 Score=75.63 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=38.4
Q ss_pred CcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC---ceeEEee
Q psy5649 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK---LNFISVK 304 (305)
Q Consensus 236 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~---~~~~~v~ 304 (305)
.++++.|.+.....+.+.+.... ..+..++|+||||||||++|++++..+. .+|+.|+
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 46667777766666655443211 1245799999999999999999999875 6788875
No 235
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.37 E-value=1.6e-09 Score=102.70 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=56.6
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH--HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA--TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNV 235 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 235 (305)
+...+||+|+.|+++.+ ..+..++ ..+++|||+.++++...+.+.+.+++++..+.+.++++|+..
T Consensus 500 R~~~tLSGGEkQRV~LA---------~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~ 567 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLA---------TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED 567 (972)
T ss_dssp SBGGGCCHHHHHHHHHH---------HHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CccccCCHHHHHHHHHH---------HHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 34567999999999998 7877763 678889999999999999999999999877888899999753
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.37 E-value=5.6e-07 Score=75.97 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=42.3
Q ss_pred ccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc---CceeEEee
Q psy5649 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES---KLNFISVK 304 (305)
Q Consensus 238 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~---~~~~~~v~ 304 (305)
.++.|.+.+++.+...+...... + ...-++...++|+||||||||++|+++|+.+ +.+|+.++
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 35678888888877766531000 0 0011223459999999999999999999988 45577664
No 237
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.36 E-value=8.4e-07 Score=75.43 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=29.9
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhc---CceeEEee
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATES---KLNFISVK 304 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~---~~~~~~v~ 304 (305)
.+.+++|+||||||||++|+++++++ +.+++.|+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34579999999999999999999998 78888764
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.36 E-value=1.6e-07 Score=80.50 Aligned_cols=79 Identities=14% Similarity=0.296 Sum_probs=51.9
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCe----EEEEec-ccc--------cc-cccchHHHHHHHHHHHHH
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH----TVVIQV-ADM--------FS-KFYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~----~~~v~~-~~~--------~~-~~~~~~~~~l~~~~~~~~ 69 (305)
.++++...++..++++||+||||||+++++++.+... .+.+.- ... .. ...+.....+...+..+.
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh
Confidence 4455555777789999999999999999999887543 222211 000 00 011111123555788888
Q ss_pred hCCCeEEEEcccc
Q psy5649 70 DHAPSLLLLDNLD 82 (305)
Q Consensus 70 ~~~~~vl~ide~d 82 (305)
.+.|.++++||.-
T Consensus 194 ~~~PdvillDEp~ 206 (356)
T 3jvv_A 194 REDPDIILVGEMR 206 (356)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEecCCCC
Confidence 9999999999974
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=3.1e-07 Score=72.33 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.8
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+.++++..++|+||+||||||+++.|++.++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4556788999999999999999999999998887544
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.35 E-value=3e-07 Score=71.80 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=31.9
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecc
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~ 47 (305)
.++++..++|+|||||||||+++.|++..+...+.++..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 467889999999999999999999999866555566543
No 241
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.5e-07 Score=77.82 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=29.9
Q ss_pred CCCcceeeecCCCchHHHHHHHHhhhc----------CceeEEee
Q psy5649 270 KPPRGILMFGPPGCSKTMIAKALATES----------KLNFISVK 304 (305)
Q Consensus 270 ~~~~gill~GppG~GKT~la~~lA~~~----------~~~~~~v~ 304 (305)
..+..++|+||||||||++++++++++ ++.++.|+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 456779999999999999999999998 46677765
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.34 E-value=3e-07 Score=69.49 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=32.0
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
++.++++..+.|.||+|||||||++.+++.+ +..+.|
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 5778999999999999999999999999988 544444
No 243
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.33 E-value=3.4e-08 Score=94.06 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=54.8
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH---HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA---TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+.+..||+|+.|+++.+ ..++.++ ..+++|||+.++|......+.+.+.++...+.+.++++|+.
T Consensus 859 ~~~~~LSGGekQRv~LA---------raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 926 (993)
T 2ygr_A 859 QPAPTLSGGEAQRVKLA---------SELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL 926 (993)
T ss_dssp CCGGGSCHHHHHHHHHH---------HHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CccccCCHHHHHHHHHH---------HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 44668999999999998 8888654 78888999999999999999999988866667788888863
No 244
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.33 E-value=4.4e-07 Score=76.75 Aligned_cols=60 Identities=38% Similarity=0.534 Sum_probs=45.2
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc-----CceeEEee
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES-----KLNFISVK 304 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~-----~~~~~~v~ 304 (305)
+....|+++.|.+.+++.+...+.. + ..+. ++|+||||||||++|+++|+++ +.+|+.++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-----------K-NIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-----------T-CCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-----------C-CCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 4556788999999998888766542 1 2223 9999999999999999999986 44555543
No 245
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.31 E-value=1e-06 Score=76.61 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=46.6
Q ss_pred CcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc---------CceeEEee
Q psy5649 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES---------KLNFISVK 304 (305)
Q Consensus 236 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~---------~~~~~~v~ 304 (305)
..+++.|.+...+.+...+..... -..+..++|+||||||||++|+++++++ +..|+.|+
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 347788999888888776542211 1345679999999999999999999998 78888775
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.31 E-value=3.4e-06 Score=72.21 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=52.0
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---------CCeEEEEecccccc-c-------------------------c
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---------KVHTVVIQVADMFS-K-------------------------F 53 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---------~~~~~~v~~~~~~~-~-------------------------~ 53 (305)
+++++..++|+||||+|||+++..++... +...++++...... . .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 68999999999999999999999998862 44667777654211 0 0
Q ss_pred -cchHHHHHHHHHHHHHh--CCCeEEEEcccccccC
Q psy5649 54 -YGEAEFRLKAAFDAALD--HAPSLLLLDNLDVLCT 86 (305)
Q Consensus 54 -~~~~~~~l~~~~~~~~~--~~~~vl~ide~d~l~~ 86 (305)
.......+..+...... ..+.+++||.+..++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111112223333444 6788999999998874
No 247
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.31 E-value=2.2e-07 Score=80.20 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhccCC--------CHHHHHhc--CCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 245 EVKLKLRQSVEWPLK--------HPEAFARL--GIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 245 ~~~~~l~~~~~~~~~--------~~~~~~~~--~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
++++.+ +.+.||.. +..+++++ ++..+..++|+|||||||||++++||+..+-.++.+
T Consensus 133 ~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 133 DIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp CHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred HHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 355555 56666653 23455555 555666699999999999999999999988776654
No 248
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=7.4e-07 Score=77.51 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=45.3
Q ss_pred ccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc-----------CceeEEee
Q psy5649 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES-----------KLNFISVK 304 (305)
Q Consensus 238 ~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~-----------~~~~~~v~ 304 (305)
+++.|.+...+.+...+..... -..+..++|+||||||||++|++++.++ +.+++.|+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 6788988888888776542111 1345679999999999999999999987 88888775
No 249
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.31 E-value=2.2e-07 Score=80.45 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=52.0
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCe----EEEEecc-cc--------ccc-ccchHHHHHHHHHHHHH
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH----TVVIQVA-DM--------FSK-FYGEAEFRLKAAFDAAL 69 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~----~~~v~~~-~~--------~~~-~~~~~~~~l~~~~~~~~ 69 (305)
.++++.++++..++|+||+||||||+++++++.+.+. +..+... .. ... ..+.....+...+..+.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 4666778889999999999999999999999977543 2222210 00 000 00001123455667777
Q ss_pred hCCCeEEEEcccc
Q psy5649 70 DHAPSLLLLDNLD 82 (305)
Q Consensus 70 ~~~~~vl~ide~d 82 (305)
...|.++++||.-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 7899999999974
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=8.5e-07 Score=75.93 Aligned_cols=53 Identities=38% Similarity=0.563 Sum_probs=41.5
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
.+....|+++.|.+.+++.+...+.. | ..+. ++|+||||||||++|+++|+.+
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 34556788888999888888766542 1 2233 9999999999999999999985
No 251
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.30 E-value=2.4e-07 Score=61.70 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 150 QRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 150 ~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
+|.+|++.++++.+..-+ -++..+|..|+||||+||.++|++|...++++ ....++.+||..++.+..
T Consensus 2 ~R~~Il~~~l~~~~~~~~-vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~---~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 2 ERRLIFGTIASKMSLAPE-ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---NRYVILQSDLEEAYATQV 69 (82)
T ss_dssp ------------CEECTT-CCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT---TCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCCc-CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---ccCCcCHHHHHHHHHHHH
Confidence 688899888877654322 36788999999999999999999999988876 345789999999999885
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.29 E-value=1.9e-06 Score=66.32 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~ 47 (305)
+..++|+|++||||||+++.|+..++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 45789999999999999999999999888776654
No 253
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=6.8e-07 Score=76.79 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=42.0
Q ss_pred cCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 231 ~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
.+....|+++.|.+++++.+...+... .. ..++|+||||||||++|+++|++++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~-~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKSA------------NL-PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTCT------------TC-CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhcC------------CC-CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345567889999998888887765421 12 2399999999999999999999864
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.28 E-value=4.5e-06 Score=70.91 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---------CCeEEEEeccccc-cc--------c---------------cc
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---------KVHTVVIQVADMF-SK--------F---------------YG 55 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---------~~~~~~v~~~~~~-~~--------~---------------~~ 55 (305)
+++++..++|+||||+|||+++..++... +...++++...-. .. . ..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 68899999999999999999999998764 4467777765421 00 0 00
Q ss_pred hHH---HHHHHHHHHHHh-CCCeEEEEcccccccC
Q psy5649 56 EAE---FRLKAAFDAALD-HAPSLLLLDNLDVLCT 86 (305)
Q Consensus 56 ~~~---~~l~~~~~~~~~-~~~~vl~ide~d~l~~ 86 (305)
..+ ..+..+...... ..+.+++||.+..++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122333334444 6788999999988764
No 255
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.27 E-value=8.4e-06 Score=70.10 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=51.8
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccc----------------cchHHHHHHHHHHHH-
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKF----------------YGEAEFRLKAAFDAA- 68 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~----------------~~~~~~~l~~~~~~~- 68 (305)
+++++..++|+||||+|||+|+..++... +....+++...-.... ....+ .+...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e-~~l~~l~~l~ 148 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE-QALEIMELLV 148 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHH-HHHHHHHHHH
Confidence 67899999999999999999999887653 4567777654321110 11122 233333333
Q ss_pred HhCCCeEEEEcccccccC
Q psy5649 69 LDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 69 ~~~~~~vl~ide~d~l~~ 86 (305)
....+.+++||.+..+.+
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 345678999999998875
No 256
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=1e-06 Score=74.73 Aligned_cols=52 Identities=38% Similarity=0.546 Sum_probs=41.7
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
+....|+++.|.+.+++.+...+.. + ..+ .++|+||||||||++|+++|.++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT-----------G-SMP-HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH-----------T-CCC-EEEEESCTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence 4556789999999999888876542 1 222 39999999999999999999985
No 257
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.27 E-value=3.8e-08 Score=92.93 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=55.6
Q ss_pred hcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHH---HHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 160 TKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN---ATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 160 ~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+.+..||+|+.|+++.+ +.++.+ +..+++|||+.++|....+.+.+.+.++...+.+.++++|+.
T Consensus 725 ~~~~~~LSGGekQRv~LA---------raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLA---------TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp TCCGGGCCHHHHHHHHHH---------HTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred cCCcccCCHHHHHHHHHH---------HHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 344568999999999998 788775 578888999999999999999999998876677788888864
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.27 E-value=1.1e-05 Score=69.09 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=51.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccc----------------cchHHHHHHHHHHHH
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKF----------------YGEAEFRLKAAFDAA 68 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~----------------~~~~~~~l~~~~~~~ 68 (305)
-+++++..++|+||||||||||+..++... +....+++...-.... ....+..+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367889999999999999999999988654 4456666654321100 011222222222233
Q ss_pred HhCCCeEEEEcccccccC
Q psy5649 69 LDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 69 ~~~~~~vl~ide~d~l~~ 86 (305)
....|.+++||++..+..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 345689999999998874
No 259
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.26 E-value=6.6e-08 Score=91.77 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=54.9
Q ss_pred cCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHH---HHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 161 KVPHSLSTDQIQQVAFITHGFVGGDLATLLSNA---TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 161 ~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
+.+..||+|+.|+++.+ ..++.++ ..+++|||+.++|......+.+.+.++...+.+.++++|+.
T Consensus 841 ~~~~~LSGGekQRv~LA---------raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl 908 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLA---------AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL 908 (972)
T ss_dssp CCGGGCCHHHHHHHHHH---------HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CchhhCCHHHHHHHHHH---------HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 44567999999999998 8888654 67888999999999999999999998866677788888863
No 260
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.25 E-value=4.2e-07 Score=70.78 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
...++++|||||||||++|.++|+.+.-
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456999999999999999999998753
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.25 E-value=1.9e-07 Score=79.39 Aligned_cols=77 Identities=17% Similarity=0.364 Sum_probs=52.2
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE--Eecccccc-----c---ccchHHHHHHHHHHHHHhCCCeEE
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV--IQVADMFS-----K---FYGEAEFRLKAAFDAALDHAPSLL 76 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~--v~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~~vl 76 (305)
++.+++++.++|+||+||||||++++|++.+.+.... ++...... + +........+..+..+....|.++
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~il 244 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRI 244 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEE
Confidence 3455788899999999999999999999998765433 33221110 0 000012244556677778899999
Q ss_pred EEccccc
Q psy5649 77 LLDNLDV 83 (305)
Q Consensus 77 ~ide~d~ 83 (305)
++||.-.
T Consensus 245 ildE~~~ 251 (330)
T 2pt7_A 245 ILGELRS 251 (330)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 9999753
No 262
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.25 E-value=5.6e-05 Score=66.33 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=94.3
Q ss_pred eEEEEcCCCCcHHHHHHHH-HhhcCCeEEEEecc-----cccccccchHHHHHH-HHHHHHHhCCCeEEEEcccccccCC
Q psy5649 15 GILIYGVNGTGKTSLIHSL-ASHMKVHTVVIQVA-----DMFSKFYGEAEFRLK-AAFDAALDHAPSLLLLDNLDVLCTG 87 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~l-a~~l~~~~~~v~~~-----~~~~~~~~~~~~~l~-~~~~~~~~~~~~vl~ide~d~l~~~ 87 (305)
++||.|+||+ ||++++.+ ++.+.... .+... .+.+...+.+...++ -.+.. ....++++||++.+-
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~L---AdgGvl~lDEIn~~~-- 313 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAVL---ADGGILAVDHLEGAP-- 313 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHHH---TTTSEEEEECCTTCC--
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeEE---cCCCeeehHhhhhCC--
Confidence 7999999999 99999999 76554433 33210 010000000000000 00111 123599999998752
Q ss_pred CCCchhHHHHHHHHHHHHhhhc------ccCCeEEEEEEecCCC-----------CCCccccCCCCcceEE-EccCCCHH
Q psy5649 88 RNRSDQERRLLSCLVTQVDRLH------ELQACVVLLAVTTSLD-----------NVDVSLRTPGRLDQEI-ELPVPSRD 149 (305)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~i~~t~~~~-----------~l~~~l~~~~r~~~~i-~~~~p~~~ 149 (305)
....+.+.+.|++-. ....++.+|+++|..+ .++.++.. ||+..+ ....|+..
T Consensus 314 -------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 314 -------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp -------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred -------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 223344555554211 2245678999999865 66667777 886543 23344332
Q ss_pred -------------HHHHHHHHHHh--cCCCCCCHHhHHHHHH-----------------HcCCCcHHhHHHHHHHHHHHH
Q psy5649 150 -------------QRAAILHCLLT--KVPHSLSTDQIQQVAF-----------------ITHGFVGGDLATLLSNATSAL 197 (305)
Q Consensus 150 -------------~r~~i~~~~l~--~~~~~ls~~~~~~la~-----------------~t~g~~~~di~~l~~~~~~~~ 197 (305)
....... +.+ .....++++..+.+.. ..-|.|++.+..+++-+...+
T Consensus 385 ~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A 463 (506)
T 3f8t_A 385 EPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHA 463 (506)
T ss_dssp ---------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHH
Confidence 2222222 222 1133455542222211 133567777777777666555
Q ss_pred hhhhcCCCccccHHHHHHHhhhcC
Q psy5649 198 LVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
.-+ ..+.++.+|+..+++-+.
T Consensus 464 ~L~---gR~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 464 RMR---LSDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHT---TCSEECHHHHHHHHHHHH
T ss_pred HHc---CcCCCCHHHHHHHHHHHH
Confidence 433 444566666666655443
No 263
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.24 E-value=1.8e-06 Score=69.77 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=38.1
Q ss_pred CCcccccc---hHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC---ceeEEe
Q psy5649 235 VKWSDIGG---QDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESK---LNFISV 303 (305)
Q Consensus 235 ~~~~~i~g---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~---~~~~~v 303 (305)
..++++.+ ...+...+.....+ ..+..++|+||||||||++|+++|.++. .+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 46677655 23455555544332 1346799999999999999999999875 444444
No 264
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.22 E-value=7.1e-07 Score=70.75 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=25.8
Q ss_pred hhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 3 ~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
+.+.+..+++++.+.|+||||||||||+++|++.+.
T Consensus 10 ~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445567889999999999999999999999999875
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.21 E-value=1.2e-06 Score=67.21 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+..+.|+||+||||||+++.|++.+++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3567999999999999999999999987554
No 266
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=1.5e-06 Score=73.55 Aligned_cols=59 Identities=27% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc-----CceeEEe
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES-----KLNFISV 303 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~-----~~~~~~v 303 (305)
+....++++.|.+.+++.+...+.. -+.+. ++|+||||+|||++|+++|.++ +.+++.+
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD------------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS------------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc------------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 3456788899999998888776542 12334 9999999999999999999985 3455554
No 267
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.21 E-value=9.3e-07 Score=69.70 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=26.2
Q ss_pred cceeeecCCCchHHHHHHHHhhhc---CceeEEe
Q psy5649 273 RGILMFGPPGCSKTMIAKALATES---KLNFISV 303 (305)
Q Consensus 273 ~gill~GppG~GKT~la~~lA~~~---~~~~~~v 303 (305)
.+++|+||||||||++|++++.++ +.+++.|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 689999999999999999999987 4555443
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.20 E-value=6.8e-06 Score=68.23 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=28.6
Q ss_pred hhhHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 2 DYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 2 ~~~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
++++. +++++..++|+||||||||||++.++..+
T Consensus 21 d~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 21 DYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp CEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred heeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34453 78899999999999999999999998754
No 269
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.20 E-value=2.3e-06 Score=74.22 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=46.3
Q ss_pred CCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc------CceeEEee
Q psy5649 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES------KLNFISVK 304 (305)
Q Consensus 235 ~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~------~~~~~~v~ 304 (305)
...+++.|.+...+.+.+.+..... -..+..++|+||||||||++++++++++ +..++.++
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3447788999888888776542111 1345579999999999999999999988 77887764
No 270
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.19 E-value=1.8e-06 Score=69.72 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=42.5
Q ss_pred CCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 233 ~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
....++++.|.+..++.+...+... ..+..++|+||||||||+++++++++++.
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456888999999888887765421 22346999999999999999999988754
No 271
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.19 E-value=6.9e-05 Score=64.05 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=106.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC---C-eEEEEecccccccccchHHHHHHHHHHHHH----hCCCeEEEEcccc
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK---V-HTVVIQVADMFSKFYGEAEFRLKAAFDAAL----DHAPSLLLLDNLD 82 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~---~-~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~vl~ide~d 82 (305)
+....++|+||.|.||++.++.++..+. . +...+... +. ..++++++.+. .....|++|||.+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 3455799999999999999999987652 2 22222211 11 22334444433 3456799999998
Q ss_pred c-ccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCC------CCCCccccCCCCcceEEEccCCCHHHHHHHH
Q psy5649 83 V-LCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSL------DNVDVSLRTPGRLDQEIELPVPSRDQRAAIL 155 (305)
Q Consensus 83 ~-l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~------~~l~~~l~~~~r~~~~i~~~~p~~~~r~~i~ 155 (305)
. +.. .....+...++..+ .+.++++. ++.. ..+.+.+.+ |. ..+++..++..+....+
T Consensus 87 ~kl~~---------~~~~aLl~~le~p~--~~~~~il~-~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNA---------AINEQLLTLTGLLH--DDLLLIVR-GNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCT---------THHHHHHHHHTTCB--TTEEEEEE-ESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCCh---------HHHHHHHHHHhcCC--CCeEEEEE-cCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 7 421 12234555555432 23444444 4432 234556665 33 57888888999999988
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhh
Q psy5649 156 HCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDH 219 (305)
Q Consensus 156 ~~~l~~~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 219 (305)
+..+++.+..++.+.++.++..+.| |+..+......+.+.-+ ...++.+++.+.+..
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g----dl~~~~~elekl~l~~~---~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG----NLLALAQALERLSLLWP---DGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT----CHHHHHHHHHHHHHHCT---TCEECHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch----HHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHhh
Confidence 8888888888999889988876544 44444444444333211 124555555554443
No 272
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.19 E-value=8.2e-06 Score=66.48 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEec
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~ 46 (305)
++.++++|+||||||||+++++||+.... .+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 44668999999999999999999997655 344443
No 273
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=1.3e-06 Score=75.05 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
+....++++.|.+.+.+.+...+.. .-+.+. ++|+||||||||++++++|+++
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~~-----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSDQ-----------PRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTTC-----------TTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHhh-----------CCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3456788899999988877765410 112344 9999999999999999999964
No 274
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.16 E-value=1.2e-06 Score=69.66 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=31.2
Q ss_pred CCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 268 GIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 268 ~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
.+..++-|+|.|||||||||.|+.||..+|++.|+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 445566789999999999999999999999988863
No 275
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.16 E-value=1e-06 Score=70.42 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=25.0
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
++.+++++.+.|+||||||||||++.|++..
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678899999999999999999999999977
No 276
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.15 E-value=2.7e-06 Score=73.64 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=43.5
Q ss_pred CCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 232 ~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
+....|+++.|.+.+++.+...+.. -..+..++|+||||||||++|+++|++++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3445788899999999888876542 123456899999999999999999998754
No 277
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.15 E-value=1.9e-05 Score=64.03 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=29.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
+++++..++|+||||+||||++..++... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 78899999999999999999988776532 344555443
No 278
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.15 E-value=1.4e-06 Score=68.85 Aligned_cols=31 Identities=39% Similarity=0.584 Sum_probs=25.9
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
+.+++|..+.|+|||||||||+++.|++...
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567888999999999999999999999864
No 279
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.14 E-value=1.9e-05 Score=65.76 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=50.3
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc-----CCeEEEEeccccccc----------------ccchHHHHHHHHHH
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSK----------------FYGEAEFRLKAAFD 66 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l-----~~~~~~v~~~~~~~~----------------~~~~~~~~l~~~~~ 66 (305)
=|++++ .++|+||||||||||+-.++... +-...+++...-... .+...+..-..+.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 468888 79999999999999988766443 456777775432210 01112222022223
Q ss_pred H---HHhCCCeEEEEcccccccC
Q psy5649 67 A---ALDHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 67 ~---~~~~~~~vl~ide~d~l~~ 86 (305)
. .....|.+++||-+..+++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 3 2456799999999999985
No 280
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.14 E-value=1.1e-05 Score=73.04 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=64.0
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHH--HHhhcC--CeEEEEecccccc------ccc------------------------
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHS--LASHMK--VHTVVIQVADMFS------KFY------------------------ 54 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~--la~~l~--~~~~~v~~~~~~~------~~~------------------------ 54 (305)
++++++.++|+||||||||||++. +++... ...+.++..+... ...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 668999999999999999999999 566553 2344444332100 000
Q ss_pred ------chHHHHHHHHHHHHHhCCCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCC
Q psy5649 55 ------GEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127 (305)
Q Consensus 55 ------~~~~~~l~~~~~~~~~~~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l 127 (305)
-.....+...........|.+++||+.-.+.+..+.....+..+ ...+..+.. .+ +.++.++...+.+
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l---~~ll~~l~~-~g-~tvl~itH~~~~~ 188 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRREL---FRLVARLKQ-IG-ATTVMTTERIEEY 188 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHH---HHHHHHHHH-HT-CEEEEEEECSSSS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHH---HHHHHHHHH-CC-CEEEEEecCCCCc
Confidence 00122334445555567788999999877665422212223333 333333333 22 3345555555554
No 281
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.13 E-value=1.3e-06 Score=71.23 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=23.5
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
..+++||||||||||++|++||+..++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 456999999999999999999987543
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.13 E-value=2.2e-06 Score=67.48 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=28.8
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD 48 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~ 48 (305)
.+++..+.|+|||||||||+++.|++.++.. .++..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~ 62 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADA 62 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEcccc
Confidence 3567889999999999999999999988654 344443
No 283
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.12 E-value=1.9e-05 Score=67.62 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=52.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccccc---------------cchHHHHHHHHHHHH-H
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFSKF---------------YGEAEFRLKAAFDAA-L 69 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~~~---------------~~~~~~~l~~~~~~~-~ 69 (305)
+++++..++|+||||+|||||+..++... +....+++...-.... .......+...++.. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 58899999999999999999999988653 4567777763321100 001122333344333 3
Q ss_pred hCCCeEEEEcccccccC
Q psy5649 70 DHAPSLLLLDNLDVLCT 86 (305)
Q Consensus 70 ~~~~~vl~ide~d~l~~ 86 (305)
...+.+++||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46788999999998874
No 284
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.12 E-value=1.6e-06 Score=64.79 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=26.9
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhc---CceeEEe
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATES---KLNFISV 303 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~---~~~~~~v 303 (305)
....++|+||||||||+|++++++.. |.+.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 44569999999999999999999987 6545444
No 285
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.11 E-value=3.6e-06 Score=73.15 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred CcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCc--ceeeecCCCchHHHHHHHHhhhc----CceeEEee
Q psy5649 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPR--GILMFGPPGCSKTMIAKALATES----KLNFISVK 304 (305)
Q Consensus 236 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--gill~GppG~GKT~la~~lA~~~----~~~~~~v~ 304 (305)
..+++.|.+...+.+...+... .. + ..+. .++|+||||||||++++++++++ +..++.++
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~------~~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNW------LR--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHH------HH--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHH------Hc--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 3477889998888887765421 11 1 2233 69999999999999999999998 67777764
No 286
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.10 E-value=3.4e-06 Score=75.52 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 240 IGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 240 i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
+.|.+++++.+...+. .+..++|+||||||||++|+++|..++.
T Consensus 24 ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 24 LYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp CSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred hHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 5567777665544332 1246999999999999999999998853
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.10 E-value=1.7e-06 Score=72.32 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=29.3
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
++.+++++.+.|+||||||||||++.|++.+
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 5788999999999999999999999999987
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.10 E-value=3e-06 Score=65.76 Aligned_cols=37 Identities=32% Similarity=0.372 Sum_probs=30.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhh-cCCeEEEE
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASH-MKVHTVVI 44 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~-l~~~~~~v 44 (305)
+..+.+..++|+|++||||||+++.|+.. ++.+++..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 45566788999999999999999999998 67666543
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.09 E-value=2.8e-06 Score=66.25 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=29.9
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
+++.+..++|.|++||||||+++.|+..++..++.
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 35667889999999999999999999999876544
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.09 E-value=5e-06 Score=65.42 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=30.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
+..+++..+.|+||+||||||+++.|++.+ +...+.++.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 334678899999999999999999999988 443335543
No 291
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.09 E-value=3.7e-08 Score=89.40 Aligned_cols=63 Identities=8% Similarity=-0.055 Sum_probs=48.0
Q ss_pred CCCCCCHHhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccc-----cHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 162 VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVL-----SYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 162 ~~~~ls~~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
.+..+|+++.++++.+ ..+..++..+++| |.+..+.. ..+.+.+.+..++..+.+.++++|..
T Consensus 350 ~p~~LS~g~~q~~~~a---------~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKS---------EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CGGGSCHHHHHHHHHH---------HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ccccCCHHHHHHHHHH---------HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 3456899999999988 7777777777788 88887777 67777777777765567777787765
No 292
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.09 E-value=1.2e-06 Score=71.38 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=27.7
Q ss_pred ceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 274 GILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 274 gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
-|.|.|||||||||+++.||+.+|++|+..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 499999999999999999999999998863
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.07 E-value=2.9e-06 Score=65.76 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=28.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+..++|+||+||||||+++.|+..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999887654
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.07 E-value=3.5e-06 Score=64.71 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=26.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
.++..++|+|||||||||+++.|++.++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~ 36 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAF 36 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEE
Confidence 4567899999999999999999999887554
No 295
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.07 E-value=2.2e-06 Score=75.87 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=28.7
Q ss_pred CcceeeecCCCchHHHHHHHHhhhc-----CceeEEee
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATES-----KLNFISVK 304 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~-----~~~~~~v~ 304 (305)
+..++||||||||||+||+++|+++ +.+++.|+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4569999999999999999999988 77777664
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.07 E-value=3.6e-06 Score=66.67 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=31.2
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcC---CeEEEEecc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVA 47 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~---~~~~~v~~~ 47 (305)
.+++..+.|.||||||||||++.|++.+. .....+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 46788999999999999999999999886 345666543
No 297
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.06 E-value=2e-06 Score=69.97 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=32.3
Q ss_pred cCCCC---cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 8 NGMKK---CNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 8 ~~~~~---~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+.+.+ +..+.|+|++||||||+++.|++.++++++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 45566 88999999999999999999999999877654
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.05 E-value=2.5e-06 Score=69.45 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=26.7
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
++.++++..+.|.||+||||||+++.|++.++.
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 466778888999999999999999999998764
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.05 E-value=3e-06 Score=66.70 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.0
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCceeEE
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKLNFIS 302 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~~~~~ 302 (305)
+.-+.|.|||||||||++++|++.+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3448999999999999999999999877664
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.04 E-value=9.3e-06 Score=66.38 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM 49 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~ 49 (305)
...+..++|+|+|||||||+++.|++.++...+.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4556789999999999999999999998866666776554
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.03 E-value=5e-06 Score=64.14 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=30.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+..+..++|+|++||||||+++.|+..++..++..
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 345567899999999999999999999998776544
No 302
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.03 E-value=1.8e-05 Score=75.60 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.8
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHh
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLAS 35 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~ 35 (305)
+.+++++.++|+||||+||||++|.++.
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 5567788999999999999999999874
No 303
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.02 E-value=4.3e-06 Score=66.29 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD 48 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~ 48 (305)
.+++..+.|.||+||||||+++.|++.+++.+..++...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 357788999999999999999999998875455555443
No 304
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.01 E-value=2.1e-06 Score=64.72 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
++.+++..+.| +.|.||+|||||||++++++..
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44445555555 8999999999999999999876
No 305
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.01 E-value=3.8e-06 Score=67.04 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.3
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
.++++|+.+.|+||||||||||++.|++...+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45788999999999999999999999998864
No 306
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.00 E-value=5.3e-06 Score=69.88 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=23.6
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
+.+++|+||||||||+||+++|.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 307
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.99 E-value=5e-05 Score=61.61 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhh----cCCeEEEEec
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASH----MKVHTVVIQV 46 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~----l~~~~~~v~~ 46 (305)
|++++..++|+|+||+|||+++..+|.. .+.+.+.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6889999999999999999999876532 2455655543
No 308
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.99 E-value=1.5e-06 Score=75.71 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCHH--hHHHHHHHcCCCcHHhHHHHHH----------HHHHHHhhhhcCCCccccHHHHHHHhhhcC
Q psy5649 166 LSTD--QIQQVAFITHGFVGGDLATLLS----------NATSALLVETEGTGQVLSYDGVMRALDHVK 221 (305)
Q Consensus 166 ls~~--~~~~la~~t~g~~~~di~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (305)
+|.+ +.++++.+ +++.. ++..+++|||++++|+...+.+.+.++++.
T Consensus 155 lS~G~~~kqrv~la---------~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 155 ISATRFKKNDIDIA---------KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp EESSCCCHHHHHHH---------HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred eCCCCccHHHHHHH---------HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 6666 88888887 88888 899999999999999999998888877763
No 309
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.99 E-value=5.3e-06 Score=63.72 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.++|+|+|||||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987654
No 310
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.98 E-value=8.7e-07 Score=75.27 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=49.6
Q ss_pred CCCCCHHhHHHHHHHcCCCcHHhHHHHH----HHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCC
Q psy5649 163 PHSLSTDQIQQVAFITHGFVGGDLATLL----SNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234 (305)
Q Consensus 163 ~~~ls~~~~~~la~~t~g~~~~di~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 234 (305)
...+|+|+.++++.+ .+++ ..+..+++|||++.+|+...+.+.+.+..+.. +.+.++++|..
T Consensus 217 ~~~lS~Gq~q~v~ia---------~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~ 282 (322)
T 1e69_A 217 LSLLSGGEKALVGLA---------LLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK 282 (322)
T ss_dssp GGGSCHHHHHHHHHH---------HHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT
T ss_pred hhhCCHHHHHHHHHH---------HHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCH
Confidence 347999999999988 7665 34567788999999999999999999988743 45667788864
No 311
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.98 E-value=3.5e-06 Score=68.49 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=29.7
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
.+.-|+|.|||||||||+|+.|+..+++.++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 455699999999999999999999999998875
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.98 E-value=5.3e-06 Score=64.31 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+..++|+|++||||||+++.|++.++..++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4667999999999999999999998886653
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.97 E-value=4.4e-06 Score=71.98 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=48.2
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccccc-------c---cc--ch------HHHHHHHHHHHH
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS-------K---FY--GE------AEFRLKAAFDAA 68 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~~-------~---~~--~~------~~~~l~~~~~~~ 68 (305)
++.++++..++|+||+||||||++++|++.+.+....+...+... . +. .. ....++..+..+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHH
Confidence 566788999999999999999999999998876544332221100 0 00 00 111244556666
Q ss_pred HhCCCeEEEEcccc
Q psy5649 69 LDHAPSLLLLDNLD 82 (305)
Q Consensus 69 ~~~~~~vl~ide~d 82 (305)
....|..++++|+.
T Consensus 249 l~~~pd~~l~~e~r 262 (361)
T 2gza_A 249 LRMKPTRILLAELR 262 (361)
T ss_dssp TTSCCSEEEESCCC
T ss_pred HhcCCCEEEEcCch
Confidence 66677777777753
No 314
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.97 E-value=4.4e-05 Score=67.86 Aligned_cols=39 Identities=15% Similarity=0.386 Sum_probs=32.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc----CCeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM----KVHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----~~~~~~v~~ 46 (305)
.+++++..++|.|+||+|||||+..++... +.++..++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 578999999999999999999999998754 445666654
No 315
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.97 E-value=9.2e-06 Score=67.67 Aligned_cols=32 Identities=34% Similarity=0.555 Sum_probs=25.7
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
+.-++|.|||||||||+++.|+.+++-.+++|
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~I 64 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44589999999999999999999884344444
No 316
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.97 E-value=3.7e-06 Score=66.04 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
++++.+.|+||||+|||||++.|++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4678899999999999999999999764
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.96 E-value=4.3e-06 Score=66.02 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
.+.++..+.|+||+||||||+++.|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4678889999999999999999999998743
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.96 E-value=6.1e-06 Score=63.02 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+.|.||+||||||+++.|++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 588999999999999999999999876544
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.96 E-value=5.7e-06 Score=67.32 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.8
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
.+..+.. .+..+.|+|||||||||+++.|+..++...
T Consensus 19 ~~~~~~~-~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 19 YFQSMAS-KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp --------CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred HHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3444443 367899999999999999999998776543
No 320
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.95 E-value=2.6e-06 Score=67.40 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=43.0
Q ss_pred HhHHHHHHHcCCCcHHhHHHHHHHHHHHHhhhhcCCCccccHHHHHHHhhhcCCchhhhhhccCCCCCcccc
Q psy5649 169 DQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240 (305)
Q Consensus 169 ~~~~~la~~t~g~~~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 240 (305)
|+.|+++.+ ++++.++..+++|||+++ +...+.+.+.++ ..+.+.+ ++|+....+..
T Consensus 108 Gq~qrv~lA---------raL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~~ 164 (208)
T 3b85_A 108 VEVAPLAYM---------RGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDLP 164 (208)
T ss_dssp EEEEEGGGG---------TTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC-------
T ss_pred chHHHHHHH---------HHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhCc
Confidence 789999998 889999999999999988 788899999888 4566677 88876655543
No 321
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.95 E-value=5.9e-06 Score=72.34 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=47.7
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE--EEEeccccccc--------ccchHHHHHHHHHHHHHhCCC
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT--VVIQVADMFSK--------FYGEAEFRLKAAFDAALDHAP 73 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~--~~v~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~ 73 (305)
+++++-..++..++|+||+||||||+++++++.+.... +.+....+... ............+..+..+.|
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~p 237 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDP 237 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCC
Confidence 45554235667799999999999999999999886542 22211111000 011111234455566667788
Q ss_pred eEEEEccc
Q psy5649 74 SLLLLDNL 81 (305)
Q Consensus 74 ~vl~ide~ 81 (305)
.++++.|+
T Consensus 238 d~i~vgEi 245 (418)
T 1p9r_A 238 DVVMVGEI 245 (418)
T ss_dssp SEEEESCC
T ss_pred CeEEEcCc
Confidence 88888874
No 322
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.94 E-value=6.6e-06 Score=75.90 Aligned_cols=54 Identities=26% Similarity=0.464 Sum_probs=43.2
Q ss_pred ccCCCCCcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCc
Q psy5649 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298 (305)
Q Consensus 230 ~~~~~~~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~ 298 (305)
...+...++++.|.+.+++.+...+. ....++|+||||||||++|+++|+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34456778899999998877776544 2246999999999999999999998853
No 323
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.93 E-value=8.8e-06 Score=65.22 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
+..+.|+||+||||||+++.|++.++.++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999887654
No 324
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.93 E-value=5.7e-06 Score=67.34 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=27.2
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCceeEE
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKLNFIS 302 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~~~~~ 302 (305)
+.-++|.|||||||||++++||..+|+..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5669999999999999999999988876654
No 325
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.93 E-value=9.2e-06 Score=66.37 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.++..+.|.||+||||||+++.|+..++..+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 45678999999999999999999999887654
No 326
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.93 E-value=2.7e-06 Score=68.59 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=21.3
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHH-hhcC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLA-SHMK 38 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la-~~l~ 38 (305)
++.++++..+.|+|||||||||+++.|+ +...
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4667888999999999999999999999 8764
No 327
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.92 E-value=5e-05 Score=64.31 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhh
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~ 36 (305)
+++++..++|+||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6788999999999999999999999865
No 328
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.92 E-value=7.1e-06 Score=63.37 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=24.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
.+++.+.|+||||||||||++.|++...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999999765
No 329
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.92 E-value=1.1e-05 Score=62.20 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=30.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
.++..+.|+|++||||||+++.|++.+ +.+++.++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 457789999999999999999999987 777777754
No 330
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.92 E-value=8.7e-06 Score=62.03 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+++|.|++||||||+++.|+..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999887653
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.91 E-value=8.8e-06 Score=64.04 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
+..++|+|++||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999998866543
No 332
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.90 E-value=0.0002 Score=65.86 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=76.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc-------CCeEEEEeccccccc---------------------ccchHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM-------KVHTVVIQVADMFSK---------------------FYGEAEFRLKA 63 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l-------~~~~~~v~~~~~~~~---------------------~~~~~~~~l~~ 63 (305)
....++|+||.|+|||||++.++... .....+++.+..... ........+..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 225 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKD 225 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHH
Confidence 45679999999999999999987532 123445544322000 00011112222
Q ss_pred HHHH-HHhC-CCeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceEE
Q psy5649 64 AFDA-ALDH-APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEI 141 (305)
Q Consensus 64 ~~~~-~~~~-~~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~i 141 (305)
.+.. .... .|.+|+|||++.. . .+..+ .....++.||....-.. ... +. ...+
T Consensus 226 ~l~~~l~~~~~~~LLVLDdv~~~-----------~-------~l~~l---~~~~~ilvTsR~~~~~~-~~~--~~-~~~v 280 (591)
T 1z6t_A 226 RLRILMLRKHPRSLLILDDVWDS-----------W-------VLKAF---DSQCQILLTTRDKSVTD-SVM--GP-KYVV 280 (591)
T ss_dssp HHHHHHHHTCTTCEEEEEEECCH-----------H-------HHHTT---CSSCEEEEEESCGGGGT-TCC--SC-EEEE
T ss_pred HHHHHHccCCCCeEEEEeCCCCH-----------H-------HHHHh---cCCCeEEEECCCcHHHH-hcC--CC-ceEe
Confidence 2222 2222 6899999999731 0 11112 22344566665433211 111 11 1223
Q ss_pred Ec-cCCCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCcH
Q psy5649 142 EL-PVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183 (305)
Q Consensus 142 ~~-~~p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~~ 183 (305)
.. ...+..+-.+++........... ......++..+.|..-
T Consensus 281 ~~l~~L~~~ea~~L~~~~~~~~~~~~-~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 281 PVESSLGKEKGLEILSLFVNMKKADL-PEQAHSIIKECKGSPL 322 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHTSCGGGS-CTHHHHHHHHHTTCHH
T ss_pred ecCCCCCHHHHHHHHHHHhCCCcccc-cHHHHHHHHHhCCCcH
Confidence 22 36788888888876654322222 2367788888888753
No 333
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.90 E-value=2.4e-06 Score=76.78 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=48.9
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE--EEEeccc-ccccc-----------cchHHHHHHHHHHHHHhCCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT--VVIQVAD-MFSKF-----------YGEAEFRLKAAFDAALDHAP 73 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~--~~v~~~~-~~~~~-----------~~~~~~~l~~~~~~~~~~~~ 73 (305)
+.++.+.+++|+||+||||||+++++++.+.+.. +.+.... +.... .+.....+..++..+..+.|
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~P 334 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRP 334 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCC
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCC
Confidence 3346788899999999999999999999987643 3333221 11000 00111234556667777889
Q ss_pred eEEEEccc
Q psy5649 74 SLLLLDNL 81 (305)
Q Consensus 74 ~vl~ide~ 81 (305)
.++++.|+
T Consensus 335 D~iivgEi 342 (511)
T 2oap_1 335 DYIIVGEV 342 (511)
T ss_dssp SEEEESCC
T ss_pred CeEEeCCc
Confidence 99999886
No 334
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.90 E-value=3.5e-05 Score=64.59 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=24.9
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
..++..++++||+|+||||++..||+.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 3567789999999999999999999876
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.90 E-value=6.6e-06 Score=63.91 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+..+.|+|||||||||+++.|++.+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 356889999999999999999998753
No 336
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.89 E-value=7.5e-06 Score=68.60 Aligned_cols=32 Identities=44% Similarity=0.596 Sum_probs=28.0
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+.+++++.++|+|||||||||+++.||+.+.+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34678889999999999999999999998754
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.89 E-value=1.2e-05 Score=63.74 Aligned_cols=41 Identities=20% Similarity=0.415 Sum_probs=32.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~ 50 (305)
-.++.++.++|.|||||||+|.++.|+..++... ++..+++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 4457778899999999999999999999988654 4444443
No 338
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.89 E-value=7.9e-05 Score=66.06 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=32.0
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc----CCeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM----KVHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l----~~~~~~v~~ 46 (305)
-|++++.-++|.|+||+|||+++..+|... +.++..++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478999999999999999999999887643 446666654
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.89 E-value=8e-06 Score=66.74 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEEec
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~ 46 (305)
.++|+||+||||||+++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999987765543
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.88 E-value=9.4e-06 Score=62.81 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
..|+|+|++||||||+++.|+..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999886543
No 341
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.88 E-value=0.00013 Score=61.52 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=31.9
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
-|++++.-++|.|+||+||||++..+|... +.+...++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 578999999999999999999999988543 346666654
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.88 E-value=1.2e-05 Score=62.79 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++..+.|.|++||||||+++.|+..++..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4567899999999999999999999998775443
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.88 E-value=3.6e-05 Score=63.11 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhh---cCCeEEEEecccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASH---MKVHTVVIQVADM 49 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~---l~~~~~~v~~~~~ 49 (305)
.+..|+|+|+|||||||+++.|+.. .+..++.++...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4567999999999999999999987 6777765655443
No 344
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.88 E-value=8.1e-06 Score=66.70 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=29.0
Q ss_pred CCCcceeeecCCCchHHHHHHHHhhhcCceeEE
Q psy5649 270 KPPRGILMFGPPGCSKTMIAKALATESKLNFIS 302 (305)
Q Consensus 270 ~~~~gill~GppG~GKT~la~~lA~~~~~~~~~ 302 (305)
....-|.|.||+||||||+++.||..+|+.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 345679999999999999999999999988764
No 345
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.87 E-value=7.6e-06 Score=66.91 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=26.9
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
.+.-++|.|||||||||+|+.|+..++.+++.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~ 63 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVII 63 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 345599999999999999999999987544443
No 346
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.87 E-value=6.3e-05 Score=72.15 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=23.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHH
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLA 34 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la 34 (305)
+.+..++.++|+||||+||||++|.++
T Consensus 657 l~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 657 FEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445677889999999999999999994
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.86 E-value=1.3e-05 Score=63.96 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=27.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+..++|.|++||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 45679999999999999999999999876544
No 348
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.86 E-value=8.7e-06 Score=67.82 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccc
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM 49 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~ 49 (305)
..+..++|+|||||||||+++.|+..++.....|++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 446779999999999999999999988555666765443
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.86 E-value=1.4e-05 Score=62.80 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+..|+|+|++||||||+++.|+..++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345799999999999999999999998775443
No 350
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.85 E-value=6.1e-06 Score=68.97 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 262 EAFARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 262 ~~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
.+++.+.+..+.| +.|+||||||||||+++|++..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4677777777777 8999999999999999999764
No 351
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=1.4e-05 Score=62.30 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
+..|+|.|++||||||+++.|+..++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999987654
No 352
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.84 E-value=2.9e-06 Score=77.86 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=38.6
Q ss_pred cccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeE
Q psy5649 239 DIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301 (305)
Q Consensus 239 ~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~ 301 (305)
.|.|.+++++.+...+.... +....+..++....+||+||||||||++|+++|+.++..++
T Consensus 296 ~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred hhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 46778877766643322110 00011112233346999999999999999999999876554
No 353
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=1.2e-05 Score=63.58 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+++..+.|+||+|+||||+++.|++.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 56788999999999999999999998764
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.83 E-value=1.2e-05 Score=62.45 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
+..++|.|++||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 355
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.82 E-value=1.3e-05 Score=68.45 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=33.0
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+.+.+|..+.|.||||||||||++.|++...+..+.+
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 6678899999999999999999999999998876655
No 356
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.82 E-value=1.2e-05 Score=68.87 Aligned_cols=32 Identities=44% Similarity=0.596 Sum_probs=28.0
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+.+++++.++|+|||||||||+++.||+.+.+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 44678889999999999999999999998753
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.81 E-value=1e-05 Score=68.14 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=27.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
++++..+.|.||||||||||++.|++.+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 678889999999999999999999998754
No 358
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.81 E-value=1.7e-05 Score=69.95 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=34.1
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEe
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~ 45 (305)
+.+.+|..+.|.||||||||||++.|++...+..+.+.
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~ 189 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVG 189 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEE
Confidence 67788999999999999999999999999988776664
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.81 E-value=1.6e-05 Score=63.73 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=27.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
..+..++|.|++||||||+++.|+..++..++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 445679999999999999999999999876654
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.81 E-value=1.7e-05 Score=60.64 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
..++|+|++||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987654
No 361
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.81 E-value=1.3e-05 Score=61.60 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHh-hcCCe
Q psy5649 14 NGILIYGVNGTGKTSLIHSLAS-HMKVH 40 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~-~l~~~ 40 (305)
..++|.|+|||||||+++.|+. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4689999999999999999998 45543
No 362
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.80 E-value=8.1e-05 Score=62.53 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=30.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~ 47 (305)
+..++|+||+||||||+++.||..++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 34789999999999999999999999887777544
No 363
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.80 E-value=1.4e-05 Score=63.08 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=26.8
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
.++.++..++|+|||||||||+++.|+..++
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3567888999999999999999999999875
No 364
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.80 E-value=1.7e-05 Score=61.92 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=26.3
Q ss_pred HhcCCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 6 ~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
+++...+++.+.|+||+|+|||||++.|++...
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455666788899999999999999999998765
No 365
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.79 E-value=1.8e-05 Score=60.54 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=25.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++|+||+||||||+++.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888876543
No 366
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.79 E-value=2.8e-06 Score=68.57 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=27.3
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++..+.| +.|.||||||||||+++|++-..
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 44555566666 89999999999999999998654
No 367
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.79 E-value=1.7e-05 Score=62.58 Aligned_cols=38 Identities=37% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhc-CCeEEEEecccc
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHM-KVHTVVIQVADM 49 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l-~~~~~~v~~~~~ 49 (305)
++++..+.|+|++||||||+++.|++.+ +. ..++..+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~--~~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNC--SVISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTE--EEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCc--EEEeCCcc
Confidence 4667789999999999999999999977 43 34444433
No 368
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.79 E-value=1.1e-05 Score=62.20 Aligned_cols=31 Identities=32% Similarity=0.356 Sum_probs=23.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+..++|.|++||||||+++.|+..++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4567999999999999999999999998765
No 369
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.78 E-value=2e-05 Score=61.72 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
+.+..++|+|++||||||+++.|+..++..++.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 345679999999999999999999999866543
No 370
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.78 E-value=2.1e-05 Score=63.06 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=27.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+..+.|.||+||||||+++.|++.++..++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 34579999999999999999999999876643
No 371
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.78 E-value=1.3e-05 Score=62.34 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
++.+.|+|||||||||+++.+++.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4568999999999999999999976
No 372
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.78 E-value=2.6e-05 Score=60.66 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=27.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+..++|+|++||||||+++.|+..++..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 345799999999999999999999988765443
No 373
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.77 E-value=3.8e-06 Score=68.79 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=29.6
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++|++-..
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466777777777 88999999999999999998654
No 374
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.77 E-value=2e-05 Score=61.19 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=25.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEec
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~ 46 (305)
+..++|+|||||||||+++.|++..+. .+.++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~ 34 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEG 34 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCC-eEEEcc
Confidence 456899999999999999999985543 234443
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.77 E-value=1.9e-05 Score=62.11 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=24.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+.|+|++||||||+++.|++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 77665443
No 376
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.77 E-value=0.00051 Score=68.55 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=82.6
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhc---C----CeEEEEecccccc---------------------cccchHHHHHH
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHM---K----VHTVVIQVADMFS---------------------KFYGEAEFRLK 62 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l---~----~~~~~v~~~~~~~---------------------~~~~~~~~~l~ 62 (305)
.....+.|+|+.|+||||||+.++... . ...++++.+.... .........+.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAK 224 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHH
Confidence 345578899999999999999987652 1 2244665443110 00011222333
Q ss_pred HHHHHHHhCC--CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcceE
Q psy5649 63 AAFDAALDHA--PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQE 140 (305)
Q Consensus 63 ~~~~~~~~~~--~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~~ 140 (305)
..+....... +.+|+|||++.. ..+..+ .+...+|.||....-... .. .....
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~~------------------~~~~~~---~~~~~ilvTtR~~~~~~~-~~---~~~~~ 279 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWDP------------------WVLKAF---DNQCQILLTTRDKSVTDS-VM---GPKHV 279 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCCH------------------HHHTTT---CSSCEEEEEESSTTTTTT-CC---SCBCC
T ss_pred HHHHHHHhccCCCEEEEEecCCCH------------------HHHHhh---cCCCEEEEEcCCHHHHHh-hc---CCceE
Confidence 3444444444 889999998742 011212 223345667665432211 11 12345
Q ss_pred EEccC-CCHHHHHHHHHHHHhcCCCCCCHHhHHHHHHHcCCCc
Q psy5649 141 IELPV-PSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 141 i~~~~-p~~~~r~~i~~~~l~~~~~~ls~~~~~~la~~t~g~~ 182 (305)
+.++. ++..+-.+++..........+.. ..++++..+.|..
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~~~~~~~~~-~~~~i~~~~~glP 321 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVNMKKEDLPA-EAHSIIKECKGSP 321 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHTSCSTTCCT-HHHHHHHHTTTCH
T ss_pred EEecCCCCHHHHHHHHHHhhCCChhhCcH-HHHHHHHHhCCCH
Confidence 67765 88888888888666443333333 5777888887764
No 377
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.76 E-value=2.9e-05 Score=61.01 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=27.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+..|+|+|++||||||+++.|+..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 445789999999999999999999988765443
No 378
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.76 E-value=3.4e-06 Score=69.27 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=28.9
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++++.+.| +.|.||||||||||+++|++-..
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456666766666 88999999999999999998654
No 379
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.76 E-value=2.5e-05 Score=63.39 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++..++|+||+||||||+++.|+..++...+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4667899999999999999999999888765543
No 380
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.75 E-value=2.6e-06 Score=68.25 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345556666566 88999999999999999998654
No 381
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.75 E-value=3.1e-06 Score=68.41 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=28.3
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++...
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355566666666 89999999999999999998754
No 382
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.75 E-value=1.6e-05 Score=66.47 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
+++++++.++|.||||+|||||++.+++.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 788999999999999999999999999865
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.75 E-value=1.9e-05 Score=66.17 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=24.1
Q ss_pred cCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 267 LGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 267 ~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+.+..+.| ++|.|||||||||+++.||+.+
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444 8999999999999999999865
No 384
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.74 E-value=2.5e-05 Score=59.39 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+.|.|++||||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 58999999999999999999999877654
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.74 E-value=2.7e-05 Score=61.18 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=28.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc-CCeEEEEe
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM-KVHTVVIQ 45 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l-~~~~~~v~ 45 (305)
.+..|.|.|++||||||+++.|+..+ +.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 56789999999999999999999988 46666553
No 386
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.74 E-value=1.8e-05 Score=70.09 Aligned_cols=32 Identities=41% Similarity=0.423 Sum_probs=28.4
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+.+..+..++|+|||||||||+++.|++.+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 55678889999999999999999999998754
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.74 E-value=1.6e-05 Score=68.68 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=31.1
Q ss_pred HhcCCCC--cceEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 6 QSNGMKK--CNGILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 6 ~~~~~~~--~~~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
-++.+.+ ++.+.|+||||||||||++.|++.+.+..
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3456667 88999999999999999999999988765
No 388
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.74 E-value=2.3e-05 Score=60.79 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=26.8
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
.....++..+.|+|++||||||+++.|+..++
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34456678899999999999999999998774
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.74 E-value=2.4e-05 Score=62.21 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++|+||+||||||+++.|+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999988766544
No 390
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.74 E-value=4e-06 Score=68.79 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=29.2
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 456667776676 88999999999999999998754
No 391
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.73 E-value=5.1e-05 Score=59.60 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=29.7
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEe
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQ 45 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~ 45 (305)
.....+..+.|+|++||||||+++.|++.+ +.++..++
T Consensus 17 ~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 345677889999999999999999999876 44444443
No 392
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.73 E-value=3.9e-06 Score=71.72 Aligned_cols=35 Identities=23% Similarity=0.547 Sum_probs=28.5
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++||+-..
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 345566666666 88999999999999999998654
No 393
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.73 E-value=2.2e-05 Score=61.87 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+.|+||+||||||+++.|++ ++.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 588999999999999999998 776654
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.73 E-value=2.5e-05 Score=62.10 Aligned_cols=30 Identities=17% Similarity=0.433 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++|+||+||||||+++.|+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998766543
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.72 E-value=3.5e-06 Score=69.54 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456667777666 89999999999999999998654
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.72 E-value=2.5e-05 Score=62.18 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=27.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+..++|.|++||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45789999999999999999999998776543
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.72 E-value=3.2e-05 Score=62.28 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+..++|.|++||||||+++.|+..++..++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999876544
No 398
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.72 E-value=2e-05 Score=62.94 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=26.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+..++|.||+||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999986543
No 399
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.71 E-value=0.00063 Score=60.86 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=45.6
Q ss_pred CCe-EEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC--CCCccccCCCCcceEEEccCCCH
Q psy5649 72 APS-LLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD--NVDVSLRTPGRLDQEIELPVPSR 148 (305)
Q Consensus 72 ~~~-vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~--~l~~~l~~~~r~~~~i~~~~p~~ 148 (305)
.|. +++|||...++.. .......++..+-+... .-.+.+|.+|..+. .+...++. .+...|.+...+.
T Consensus 296 lP~ivlvIDE~~~ll~~------~~~~~~~~l~~Lar~gR-a~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMT------VGKKVEELIARLAQKAR-AAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CCEEEEEEETHHHHHHH------HHHHHHHHHHHHHHHCG-GGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CCcEEEEEeCHHHHHhh------hhHHHHHHHHHHHHHhh-hCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 354 8999999776531 11112222222222221 23455666777665 46666665 6778889999999
Q ss_pred HHHHHHHH
Q psy5649 149 DQRAAILH 156 (305)
Q Consensus 149 ~~r~~i~~ 156 (305)
.+...++.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887764
No 400
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.71 E-value=3.7e-06 Score=68.12 Aligned_cols=35 Identities=31% Similarity=0.533 Sum_probs=28.6
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++++.+.| +.|.||||||||||+++|++-..
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 355666666666 88999999999999999998654
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.71 E-value=1.8e-05 Score=66.67 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=28.6
Q ss_pred ceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 274 GILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 274 gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
-|+|.||+|||||+|+..||++++..+|+.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 4899999999999999999999999998854
No 402
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.70 E-value=5.2e-06 Score=68.39 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=28.0
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhh
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATE 295 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~ 295 (305)
+++++++..+.| +.|.||||||||||+++|++-
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456666776666 899999999999999999985
No 403
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.70 E-value=1.8e-05 Score=65.16 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+++|+||||+|||||+++|++...+..+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i 33 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASS 33 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 588999999999999999999887765544
No 404
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.70 E-value=5.4e-06 Score=65.82 Aligned_cols=35 Identities=29% Similarity=0.509 Sum_probs=28.2
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 355556666566 88999999999999999998754
No 405
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.70 E-value=5e-06 Score=67.98 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.9
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456666766666 88999999999999999998754
No 406
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.69 E-value=1.3e-05 Score=67.26 Aligned_cols=29 Identities=38% Similarity=0.493 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCe
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVH 40 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~ 40 (305)
+++.++|+||+||||||+++.|++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 57889999999999999999999987654
No 407
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.69 E-value=3.3e-05 Score=60.89 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEEeccccc
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~~ 50 (305)
.++|.|||||||+|.++.|+..++... ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998765 4544543
No 408
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.69 E-value=5.4e-06 Score=71.36 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=27.9
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++..+.| +.|.||||||||||.++||+-..
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 44556666666 88999999999999999998664
No 409
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.69 E-value=6.7e-06 Score=68.75 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCCCCcceeeecCCCchHHHHHHHHhhhcCc--eeEEe
Q psy5649 268 GIKPPRGILMFGPPGCSKTMIAKALATESKL--NFISV 303 (305)
Q Consensus 268 ~~~~~~gill~GppG~GKT~la~~lA~~~~~--~~~~v 303 (305)
|+...+.++|+||||||||+||..+|.+.|. -|++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4444445899999999999999999987543 35554
No 410
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.68 E-value=4.3e-06 Score=68.80 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=28.6
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++++.+.| +.|.||||||||||+++|++-..
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456666666666 89999999999999999998653
No 411
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.67 E-value=0.0002 Score=67.83 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhh
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~ 36 (305)
++++.++|+||||+||||++|.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 56778999999999999999999874
No 412
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.67 E-value=5e-06 Score=68.20 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 456666766666 89999999999999999998653
No 413
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.67 E-value=6.1e-06 Score=70.63 Aligned_cols=34 Identities=29% Similarity=0.504 Sum_probs=27.5
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++.+.| +.|.||||||||||.++||+-..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 44556666666 88999999999999999998654
No 414
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.67 E-value=5.7e-06 Score=66.53 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=28.8
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++|++...
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 455666666666 89999999999999999998764
No 415
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.66 E-value=2.7e-05 Score=60.36 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=27.3
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
..+++|.||+|+|||+||..||...+ .+|+-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 46799999999999999999999877 77764
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.66 E-value=3.9e-05 Score=65.62 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=24.2
Q ss_pred cCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 267 LGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 267 ~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+.+..+.| ++|.|||||||||+++.||+.+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34444444 8999999999999999999865
No 417
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.66 E-value=3.7e-05 Score=60.37 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=25.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.+.|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5789999999999999999999987654
No 418
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.66 E-value=6.6e-06 Score=70.50 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=27.6
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++..+.| +.|.||||||||||.++||+-..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 44556666666 88999999999999999998754
No 419
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.65 E-value=5.4e-06 Score=67.62 Aligned_cols=32 Identities=28% Similarity=0.611 Sum_probs=26.3
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhh
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATE 295 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~ 295 (305)
++++++..+.| +.|.||||||||||+++|++-
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44555665556 889999999999999999995
No 420
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.65 E-value=6.3e-06 Score=67.87 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 355566666666 88999999999999999998654
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.64 E-value=2.5e-05 Score=69.26 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=30.4
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
++.+++ +.+.|+||||||||||+++|++.+.+..+.
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 356778 899999999999999999999988765433
No 422
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.64 E-value=4.8e-05 Score=61.36 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
...+..+.|+|++||||||+++.|++.++.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3566789999999999999999999999876543
No 423
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.64 E-value=0.0012 Score=60.11 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=77.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHh----hcCCe---EEEEeccccc---------------ccc---------cchHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLAS----HMKVH---TVVIQVADMF---------------SKF---------YGEAEFR 60 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~----~l~~~---~~~v~~~~~~---------------~~~---------~~~~~~~ 60 (305)
....+.|+|+.|+||||||+.+++ ..... .++++.+... +.. .......
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 456789999999999999999996 33322 3455544321 000 0001122
Q ss_pred HHHHHHHHHhCC-CeEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCCCCCccccCCCCcce
Q psy5649 61 LKAAFDAALDHA-PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQ 139 (305)
Q Consensus 61 l~~~~~~~~~~~-~~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~~l~~~l~~~~r~~~ 139 (305)
+...+....... +.+|++|+++.. + .+ .+. . . ....+|.||+.. .+.... +....
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~-------~----~~-~~~---~-~----~gs~ilvTTR~~-~v~~~~---~~~~~ 286 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQE-------E----TI-RWA---Q-E----LRLRCLVTTRDV-EISNAA---SQTCE 286 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCH-------H----HH-HHH---H-H----TTCEEEEEESBG-GGGGGC---CSCEE
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCc-------h----hh-ccc---c-c----CCCEEEEEcCCH-HHHHHc---CCCCe
Confidence 334444444554 899999998752 0 01 111 1 1 122345566542 222221 11235
Q ss_pred EEEccCCCHHHHHHHHHHHHhcCCC-CCCHHhHHHHHHHcCCCc
Q psy5649 140 EIELPVPSRDQRAAILHCLLTKVPH-SLSTDQIQQVAFITHGFV 182 (305)
Q Consensus 140 ~i~~~~p~~~~r~~i~~~~l~~~~~-~ls~~~~~~la~~t~g~~ 182 (305)
.++++..+..+-.+++.......+. .-.......++..+.|..
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 6888899999988887754222111 000113455666666653
No 424
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.64 E-value=5.8e-06 Score=70.63 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=28.4
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++||+-..
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 355666666666 88999999999999999998654
No 425
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.64 E-value=7.3e-06 Score=67.87 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=29.0
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++.+..+.| +.|.||||||||||+++|++...
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456666766666 88999999999999999998764
No 426
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.64 E-value=7.2e-06 Score=70.56 Aligned_cols=35 Identities=29% Similarity=0.627 Sum_probs=28.7
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++||+-..
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 355666776666 88999999999999999998654
No 427
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.64 E-value=5e-05 Score=60.44 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+..+.|.|++||||||+++.|++ ++.+++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 456799999999999999999998 7766543
No 428
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.63 E-value=6.6e-05 Score=63.96 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=27.2
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
+.+..+..+.|+||||+|||||++.+++.+
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 557889999999999999999999999875
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.63 E-value=9.1e-06 Score=67.04 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.2
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456667776666 89999999999999999998754
No 430
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.63 E-value=7.7e-06 Score=66.53 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.0
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456666666666 89999999999999999998754
No 431
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.63 E-value=3.1e-05 Score=59.69 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=25.3
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
+.+.++ ..+|+|||||||||++++|+..++.
T Consensus 22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 22 IPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344555 6789999999999999999987764
No 432
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.63 E-value=6e-06 Score=67.42 Aligned_cols=35 Identities=23% Similarity=0.523 Sum_probs=28.2
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||.++|++-..
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 355556666666 88999999999999999998754
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.62 E-value=4.1e-05 Score=60.79 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.++|.|++||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999988765443
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.62 E-value=5.6e-06 Score=70.82 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.7
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++..+.| +.|.||||||||||.++||+-..
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45556666666 88999999999999999998654
No 435
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.61 E-value=2.9e-05 Score=65.38 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
..+..+.|.||+||||||+++.|++.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6778899999999999999999999876
No 436
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.59 E-value=3.9e-05 Score=64.92 Aligned_cols=29 Identities=41% Similarity=0.552 Sum_probs=26.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
++|..++|+|||||||||+++.|++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999997743
No 437
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.59 E-value=5.6e-05 Score=59.27 Aligned_cols=30 Identities=27% Similarity=0.139 Sum_probs=25.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
+..+.|+|++||||||+++.|++. +.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 457999999999999999999997 766543
No 438
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.59 E-value=4.4e-05 Score=60.29 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCe
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVH 40 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~ 40 (305)
+..|+|.|++||||||+++.|+..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999988763
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.59 E-value=5.7e-05 Score=60.41 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
.++|.|++||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999999886543
No 440
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.59 E-value=2.4e-05 Score=63.54 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.6
Q ss_pred CCCCCcceeeecCCCchHHHHHHHHh
Q psy5649 268 GIKPPRGILMFGPPGCSKTMIAKALA 293 (305)
Q Consensus 268 ~~~~~~gill~GppG~GKT~la~~lA 293 (305)
++....-++|.||||||||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45555669999999999999999998
No 441
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.59 E-value=6e-05 Score=58.61 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEe
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHM---KVHTVVIQ 45 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~ 45 (305)
.+.|.|++||||||+++.|+..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999987 77776653
No 442
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.58 E-value=7.9e-06 Score=70.40 Aligned_cols=34 Identities=24% Similarity=0.610 Sum_probs=27.2
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++.+..+.| +.|.||||||||||.++||+-..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 44455555555 88999999999999999998654
No 443
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.58 E-value=0.00039 Score=67.52 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhh
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~ 36 (305)
++.++|+||||+||||++|.+ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 788999999999999999999 53
No 444
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.58 E-value=7.7e-05 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=19.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhh
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~ 36 (305)
+..++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 556889999999999998655543
No 445
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.58 E-value=1.8e-05 Score=62.61 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCCe
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVH 40 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~~ 40 (305)
..+..|.|.|++||||||+++.|+..++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 456789999999999999999999877543
No 446
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.58 E-value=0.00099 Score=60.13 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=47.0
Q ss_pred eEEEEcccccccCCCCCchhHHHHHHHHHHHHhhhcccCCeEEEEEEecCCC--CCCccccCCCCcceEEEccCCCHHHH
Q psy5649 74 SLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD--NVDVSLRTPGRLDQEIELPVPSRDQR 151 (305)
Q Consensus 74 ~vl~ide~d~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~t~~~~--~l~~~l~~~~r~~~~i~~~~p~~~~r 151 (305)
-+++|||+..++.... . .....+ ..+-+... .-.+.+|.+|..+. .++..++. -+...|.+...+..+.
T Consensus 345 ivvVIDE~~~L~~~~~--~---~~~~~L-~~Iar~GR-a~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG--K---KVEELI-ARIAQKAR-AAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEESCCTTHHHHTC--H---HHHHHH-HHHHHHCT-TTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHH
T ss_pred EEEEEeCHHHHhhhhh--H---HHHHHH-HHHHHHHh-hCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHH
Confidence 5899999988764321 1 111122 22222221 45677777787776 77777766 6778889999998887
Q ss_pred HHHHH
Q psy5649 152 AAILH 156 (305)
Q Consensus 152 ~~i~~ 156 (305)
..++.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77763
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.58 E-value=6.3e-05 Score=58.58 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=26.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
...+.|+|++||||||+++.|+..++.+++.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 4468899999999999999999988876644
No 448
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.57 E-value=3.1e-05 Score=67.53 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.7
Q ss_pred hcCCCCcce--EEEEcCCCCcHHHHHHHHHhh
Q psy5649 7 SNGMKKCNG--ILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 7 ~~~~~~~~~--vll~Gp~G~GKTtl~~~la~~ 36 (305)
++.+++|.. ++|+||||+|||||+++|++.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 577889998 999999999999999999986
No 449
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.57 E-value=1.5e-05 Score=67.63 Aligned_cols=34 Identities=15% Similarity=0.348 Sum_probs=28.4
Q ss_pred CCCcc--eEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 10 MKKCN--GILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 10 ~~~~~--~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
+++++ +++|+||+||||||++++||+.++.+++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 44544 49999999999999999999999877644
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.57 E-value=3.9e-05 Score=63.69 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=26.0
Q ss_pred ceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 274 GILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 274 gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
-|.|.|+|||||||+|+.|+ ++|+++|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 38999999999999999999 689888764
No 451
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.56 E-value=3.7e-05 Score=59.76 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
.|+|.|++||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999875
No 452
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.56 E-value=6.9e-05 Score=58.44 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhc---CCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHM---KVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v 44 (305)
.|.|.|++||||||+++.|++.+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 47899999999999999999988 8877655
No 453
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.56 E-value=5.3e-05 Score=66.76 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=32.4
Q ss_pred HHHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 262 EAFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 262 ~~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
.+++.+ +..++| +.|.||||||||||++.||+...-....|
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 346666 666666 89999999999999999999887554433
No 454
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.56 E-value=8.3e-05 Score=60.61 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=32.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCe--------EEEEecccccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVH--------TVVIQVADMFS 51 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~--------~~~v~~~~~~~ 51 (305)
.+..|.|.|++||||||+++.|+..++.+ ...++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34568999999999999999999988865 44677766653
No 455
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.56 E-value=8.9e-06 Score=70.43 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+++++++..+.| +.|.||||||||||.++||+-.
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456666666666 8999999999999999999854
No 456
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.55 E-value=1.3e-05 Score=66.64 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=29.8
Q ss_pred HHHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 262 EAFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 262 ~~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
.+++++++..+.| +.|.||||||||||+++|++...
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3466677777777 89999999999999999998754
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.55 E-value=6.4e-05 Score=59.19 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
.+.|.|++||||||+++.|++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 689999999999999999999999776543
No 458
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.54 E-value=6.5e-05 Score=63.24 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~ 38 (305)
..+-.+.|.||+||||||+++.|++.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445789999999999999999999876
No 459
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.54 E-value=9.4e-05 Score=69.59 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=24.9
Q ss_pred hcCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 7 ~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
+..+. ++.++|+||||+||||++|.+++..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34444 7889999999999999999998753
No 460
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.54 E-value=3.9e-05 Score=67.35 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=27.8
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcCceeEEe
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESKLNFISV 303 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~~~~~~v 303 (305)
+.-|++.|||||||||+|+.|+..+++.+++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 34488999999999999999999999887754
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.53 E-value=4.4e-05 Score=60.45 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=31.4
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhcC----CeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMK----VHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l~----~~~~~v~~ 46 (305)
+.++++..+.|.|++||||||+++.|++.++ .+++.++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4567788899999999999999999998775 34555653
No 462
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.53 E-value=1.1e-05 Score=66.07 Aligned_cols=32 Identities=22% Similarity=0.562 Sum_probs=26.4
Q ss_pred HHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 264 FARLGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 264 ~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
++++++..+ | +.|.||||||||||+++|++..
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 445556666 6 8899999999999999999875
No 463
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.53 E-value=2.6e-05 Score=63.31 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
+..-+.|.||||||||||+++|++-..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333489999999999999999998653
No 464
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.53 E-value=1.3e-05 Score=68.57 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=29.5
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
++++++++.+.| +.|.||||||||||+++|++-..
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 466777777777 89999999999999999998654
No 465
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.52 E-value=0.0018 Score=56.77 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=49.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccc--------------------cccchHHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFS--------------------KFYGEAEFRLKAAFDAA 68 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~--------------------~~~~~~~~~l~~~~~~~ 68 (305)
++..++++|++|+||||++..||..+ +.....+++..... .........+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998755 45566665432210 11123344556777777
Q ss_pred HhCCCeEEEEcccc
Q psy5649 69 LDHAPSLLLLDNLD 82 (305)
Q Consensus 69 ~~~~~~vl~ide~d 82 (305)
......+++||..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77777899999764
No 466
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.52 E-value=2.4e-05 Score=61.98 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.4
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
.+.+..|.|.|++||||||+++.|+..++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346778999999999999999999987643
No 467
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.49 E-value=6e-05 Score=64.35 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=31.4
Q ss_pred HHHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcCceeE
Q psy5649 262 EAFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESKLNFI 301 (305)
Q Consensus 262 ~~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~~~~~ 301 (305)
.+++.+ +...+| +.|.||||||||||.++|++...-+..
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g 100 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII 100 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence 456666 666666 899999999999999999998765543
No 468
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.48 E-value=0.0011 Score=58.65 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
|++++.-++|.|+||+|||+++..+|... +.++..++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 78999999999999999999999887644 556666654
No 469
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.47 E-value=0.0014 Score=57.34 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=45.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEecccccc-------------------c-ccchHHHHHHHHHHHH
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVADMFS-------------------K-FYGEAEFRLKAAFDAA 68 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~~~~-------------------~-~~~~~~~~l~~~~~~~ 68 (305)
++..++++||+|+||||++..||..+ +..+..+++..... . ............+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46789999999999999999999765 44555555431100 0 0011222234455555
Q ss_pred HhCCCeEEEEccccc
Q psy5649 69 LDHAPSLLLLDNLDV 83 (305)
Q Consensus 69 ~~~~~~vl~ide~d~ 83 (305)
....+.++++|....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556778999997743
No 470
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.46 E-value=8.8e-05 Score=62.53 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=29.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~ 47 (305)
+..++|+||+|||||||+..||..++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35789999999999999999999998777665543
No 471
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.44 E-value=0.00014 Score=57.95 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=42.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEeccc-------ccccccchH-----HHHHHHHHHHHHh----CC
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQVAD-------MFSKFYGEA-----EFRLKAAFDAALD----HA 72 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~~~-------~~~~~~~~~-----~~~l~~~~~~~~~----~~ 72 (305)
++.-++++||+|+||||++..++... +...+.++... +.+.. |.. .....++++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCC
Confidence 45678889999999999888777654 44555553221 11111 100 0112344554443 34
Q ss_pred CeEEEEcccccc
Q psy5649 73 PSLLLLDNLDVL 84 (305)
Q Consensus 73 ~~vl~ide~d~l 84 (305)
+.+++|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 779999999754
No 472
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.44 E-value=3.9e-05 Score=58.54 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCe---EEEE
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVH---TVVI 44 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~---~~~v 44 (305)
+.+.|+|++|||||||++.|++.+.+. ...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEE
Confidence 468999999999999999999987654 5555
No 473
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.43 E-value=0.00017 Score=57.09 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
-++++.|++|+||||++-.+|..+ +..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 368999999999999988888654 555544443
No 474
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.43 E-value=0.00019 Score=62.68 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHh-hccCCCHHHHHhcCC-CCCcceee--ecCCCchHHHHHHHHhhhc
Q psy5649 237 WSDIGGQDEVKLKLRQSV-EWPLKHPEAFARLGI-KPPRGILM--FGPPGCSKTMIAKALATES 296 (305)
Q Consensus 237 ~~~i~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~gill--~GppG~GKT~la~~lA~~~ 296 (305)
.+.+.|.+...+.+...+ ... .. +. ..+..+++ +||||+|||++++.++.+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~------~~--~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRL------LS--GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHH------HT--SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHhHHH------hc--CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 356788887777777665 311 00 11 13445888 9999999999999999876
No 475
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.42 E-value=3.6e-05 Score=61.85 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=16.3
Q ss_pred CCcceeeecCCCchHHHHHHHHh-hhc
Q psy5649 271 PPRGILMFGPPGCSKTMIAKALA-TES 296 (305)
Q Consensus 271 ~~~gill~GppG~GKT~la~~lA-~~~ 296 (305)
.+.-+.|.|||||||||++++|+ +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 33448999999999999999999 665
No 476
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.42 E-value=3.6e-05 Score=60.70 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.0
Q ss_pred hHHhcCCCCcceEEEEcCCCCcHHHHHHHHHhhc
Q psy5649 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37 (305)
Q Consensus 4 ~~~~~~~~~~~~vll~Gp~G~GKTtl~~~la~~l 37 (305)
.+.++.+.++..++|+|++|+|||||++.+++..
T Consensus 17 ~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 17 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556888899999999999999999999998754
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.41 E-value=0.00013 Score=60.69 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=30.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecccc
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM 49 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~~~ 49 (305)
.+..++|+||+|||||+|+..||..++..++..+.-.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 34568899999999999999999999877666554444
No 478
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.41 E-value=0.00011 Score=58.92 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 11 KKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 11 ~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
..+..+.|.||+||||||+++.|++.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 37788999999999999999999998874
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.39 E-value=2.5e-05 Score=65.37 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.8
Q ss_pred HHHhcCCCCCcc--eeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRG--ILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~g--ill~GppG~GKT~la~~lA~~~~ 297 (305)
+++++++..+.| +.|.||||||||||+++|++-..
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456666666666 99999999999999999998654
No 480
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.39 E-value=0.00016 Score=61.82 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 268 GIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 268 ~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
++....-+.|+||||||||+|++.+|...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44444449999999999999999999886
No 481
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.39 E-value=0.00015 Score=57.65 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=27.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v 44 (305)
+..+.|+|++||||||+++.|+..++.+++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 34689999999999999999999998776443
No 482
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.39 E-value=0.00025 Score=60.11 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=31.9
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhhc---CCeEEEEec
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHM---KVHTVVIQV 46 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~l---~~~~~~v~~ 46 (305)
-|+.++.-++|.|+||+|||||+..+|... +.++..++.
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 378999999999999999999999998653 556665543
No 483
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.38 E-value=9e-05 Score=62.34 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=22.0
Q ss_pred cceeeecCCCchHHHHHHHHhhhcC
Q psy5649 273 RGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 273 ~gill~GppG~GKT~la~~lA~~~~ 297 (305)
.-+.|.||||||||||++.|++.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3389999999999999999998763
No 484
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.36 E-value=9.8e-05 Score=62.12 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=22.4
Q ss_pred cceeeecCCCchHHHHHHHHhhhcC
Q psy5649 273 RGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 273 ~gill~GppG~GKT~la~~lA~~~~ 297 (305)
.-+.|.|||||||||++++|++.++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3489999999999999999999765
No 485
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.36 E-value=0.00016 Score=59.92 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEE
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTV 42 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~ 42 (305)
+..|.|+|++||||||+++.|+ .++.+++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~i 103 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYII 103 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEE
Confidence 4569999999999999999999 5776553
No 486
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.35 E-value=7.2e-05 Score=60.10 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=25.6
Q ss_pred cCCCCcceEEEEcCCCCcHHHHHHHHHhh
Q psy5649 8 NGMKKCNGILIYGVNGTGKTSLIHSLASH 36 (305)
Q Consensus 8 ~~~~~~~~vll~Gp~G~GKTtl~~~la~~ 36 (305)
...++|..+.|.|++||||||+++.|++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567888999999999999999999987
No 487
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=9.3e-05 Score=62.03 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=26.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEe
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~ 45 (305)
.++.+.|.||||+|||||+++|++...+..+.+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 5678999999999999999999998888776664
No 488
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.35 E-value=0.00016 Score=55.86 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 15 GILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 15 ~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
-+.|+||+|+|||||++.|.....-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4789999999999999999887643
No 489
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.34 E-value=9.4e-05 Score=61.81 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.5
Q ss_pred cCCCCCcceeeecCCCchHHHHHHHHhhhc
Q psy5649 267 LGIKPPRGILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 267 ~~~~~~~gill~GppG~GKT~la~~lA~~~ 296 (305)
.++.+..-++|.||||+|||||++.+|+..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345555559999999999999999999865
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.34 E-value=0.00013 Score=63.93 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeE
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHT 41 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~ 41 (305)
-..+..++|+|+|||||||+++.|+..++..+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~ 286 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH 286 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEE
Confidence 34567799999999999999999999887654
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.33 E-value=0.00017 Score=60.10 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=28.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEecc
Q psy5649 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47 (305)
Q Consensus 13 ~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~~~ 47 (305)
+..+.|.||+|||||+|+..||..++..++..+.-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 34688999999999999999999988666555443
No 492
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.33 E-value=0.00011 Score=65.07 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=24.6
Q ss_pred cCCCCCcc--eeeecCCCchHHHHHHHHhhhc
Q psy5649 267 LGIKPPRG--ILMFGPPGCSKTMIAKALATES 296 (305)
Q Consensus 267 ~~~~~~~g--ill~GppG~GKT~la~~lA~~~ 296 (305)
+.+....| ++|.|||||||||+++.||+.+
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44554555 8999999999999999999865
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.33 E-value=0.00029 Score=60.14 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=38.6
Q ss_pred CcccccchHHHHHHHHHHhhccCCCHHHHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcCceeEEee
Q psy5649 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304 (305)
Q Consensus 236 ~~~~i~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~~~~~~v~ 304 (305)
.-..+.|.+...+.+.+ +.. ..++++||+|+|||+|++.++.+.+.+++.++
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 34556777777666665 331 36999999999999999999998766655553
No 494
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.32 E-value=0.00014 Score=60.50 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHhhcCC
Q psy5649 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKV 39 (305)
Q Consensus 9 ~~~~~~~vll~Gp~G~GKTtl~~~la~~l~~ 39 (305)
....+..+.|.||+||||||+++.|++.++.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456778999999999999999999998764
No 495
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.32 E-value=9.5e-05 Score=63.12 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=27.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcC-CeEEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMK-VHTVVI 44 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~-~~~~~v 44 (305)
++..+.|+||||+|||||+++|++... +..+.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I 247 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV 247 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCc
Confidence 467899999999999999999999877 665555
No 496
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.30 E-value=0.00021 Score=55.40 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=25.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHhhcCCeEEE
Q psy5649 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43 (305)
Q Consensus 12 ~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~ 43 (305)
.+..++|.||+|+||||++..|+.... .++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIs 63 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIA 63 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEe
Confidence 356799999999999999999998765 4433
No 497
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.29 E-value=0.00015 Score=61.08 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred CcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 272 PRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 272 ~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
|.-+.+.|||||||||+++.|++.++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999998865
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.29 E-value=0.00015 Score=61.30 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEe
Q psy5649 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45 (305)
Q Consensus 14 ~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~ 45 (305)
..++|.||+||||||+++.||..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999985544443
No 499
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=3.1e-05 Score=64.78 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHhhcCCeEEEEe
Q psy5649 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45 (305)
Q Consensus 10 ~~~~~~vll~Gp~G~GKTtl~~~la~~l~~~~~~v~ 45 (305)
+.+++.+.|.||||+|||||+++|++...+..+.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 346889999999999999999999998776665553
No 500
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.28 E-value=9.7e-05 Score=63.78 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.2
Q ss_pred HHHhcCCCCCcceeeecCCCchHHHHHHHHhhhcC
Q psy5649 263 AFARLGIKPPRGILMFGPPGCSKTMIAKALATESK 297 (305)
Q Consensus 263 ~~~~~~~~~~~gill~GppG~GKT~la~~lA~~~~ 297 (305)
.+.++.+.+..-+++.|||||||||+++++++...
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555555545599999999999999999998653
Done!