RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5649
(305 letters)
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 354 bits (910), Expect = e-117
Identities = 113/316 (35%), Positives = 183/316 (57%), Gaps = 18/316 (5%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
++ G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ A
Sbjct: 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 289
Query: 65 FDAALDHAPSLLLLDNLDVLCTGR--NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTT 122
F+ A +AP+++ +D LD + R + ERR++S L+T +D L + +A V+++A T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATN 348
Query: 123 SLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFV 182
+++D +LR GR D+E+++ +P R IL + + D ++QVA THG V
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHV 407
Query: 183 GGDLATLLSNATSALLVETEGTGQ--------------VLSYDGVMRALDHVKPSAMRQV 228
G DLA L S A + + ++ D AL PSA+R+
Sbjct: 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET 467
Query: 229 LVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMI 288
+VEVP V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC KT++
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 289 AKALATESKLNFISVK 304
AKA+A E + NFIS+K
Sbjct: 528 AKAIANECQANFISIK 543
Score = 182 bits (464), Expect = 2e-52
Identities = 70/292 (23%), Positives = 126/292 (43%), Gaps = 22/292 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++ FD A
Sbjct: 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 566
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQE-----RRLLSCLVTQVDRLHELQACVVLLAVTTS 123
AP +L D LD + R + + R+++ ++T++D + + V ++ T
Sbjct: 567 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNR 625
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGRLDQ I +P+P R AIL L K P + D ++ +A +T+GF G
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSG 684
Query: 184 GDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEV----------- 232
DL + A L E + + + + E+
Sbjct: 685 ADLTEICQRA--CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF 742
Query: 233 --PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPG 282
+V +DI + L+QS + + + G P +G
Sbjct: 743 ARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGGAGPSQGSGGGTGGS 794
Score = 119 bits (300), Expect = 3e-30
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 220 VKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFG 279
+P + V + D+GG + ++++ VE PL+HP F +G+KPPRGIL++G
Sbjct: 186 GEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYG 245
Query: 280 PPGCSKTMIAKALATESKLNFISV 303
PPG KT+IA+A+A E+ F +
Sbjct: 246 PPGTGKTLIARAVANETGAFFFLI 269
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 208 bits (532), Expect = 3e-64
Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 20/250 (8%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ AF+ A +AP+
Sbjct: 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPA 299
Query: 75 LLLLDNLDVLCTGRNR--SDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLR 132
++ +D LD + R + + ERR++S L+T +D L + V+++A T +++D +LR
Sbjct: 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALR 358
Query: 133 TPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192
GR D+E+++ +P R IL + + D ++QVA THG VG DLA L S
Sbjct: 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSE 417
Query: 193 A---------------TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKW 237
A + E + V + D AL PSA+R+ +VEVP V W
Sbjct: 418 AALQAIRKKMDLIDLEDETIDAEVMNSLAV-TMDDFRWALSQSNPSALRETVVEVPQVTW 476
Query: 238 SDIGGQDEVK 247
DIGG+
Sbjct: 477 EDIGGRSHHH 486
Score = 128 bits (324), Expect = 5e-34
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 184 GDL--ATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIG 241
GD+ A +VET+ + + +P + V + DIG
Sbjct: 149 GDIFLVHGGMRAVEFKVVETDPSPYCIVAPDT-VIHCEGEPIKREDEEESLNEVGYDDIG 207
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
G + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A E+ F
Sbjct: 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
Query: 302 SVK 304
+
Sbjct: 268 LIN 270
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 173 bits (442), Expect = 1e-52
Identities = 41/81 (50%), Positives = 64/81 (79%)
Query: 224 AMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGC 283
A+R+ +VEVP V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 284 SKTMIAKALATESKLNFISVK 304
KT++AKA+A E + NFIS+K
Sbjct: 61 GKTLLAKAIANECQANFISIK 81
Score = 123 bits (312), Expect = 2e-33
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 18/259 (6%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++ FD A
Sbjct: 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA 104
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQE-----RRLLSCLVTQVDRLHELQACVVLLAVTTS 123
AP +L D LD + R + + R+++ ++T++D + + V ++ T
Sbjct: 105 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNR 163
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGRLDQ I +P+P R AIL L K P + D ++ +A +T+GF G
Sbjct: 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD-LEFLAKMTNGFSG 222
Query: 184 GDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVE-----------V 232
DL + A + E+ + + +
Sbjct: 223 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282
Query: 233 PNVKWSDIGGQDEVKLKLR 251
+V +DI + L+
Sbjct: 283 RSVSDNDIRKYEMFAQTLQ 301
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 161 bits (411), Expect = 2e-48
Identities = 37/75 (49%), Positives = 56/75 (74%)
Query: 230 VEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIA 289
+ VPNV W+DIG ++++ +L ++ P+++P+ F LG+ P G+L+ GPPGC KT++A
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 290 KALATESKLNFISVK 304
KA+A ES LNFISVK
Sbjct: 62 KAVANESGLNFISVK 76
Score = 118 bits (297), Expect = 1e-31
Identities = 57/237 (24%), Positives = 114/237 (48%), Gaps = 17/237 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
G+ G+L+ G G GKT L ++A+ ++ + ++ ++ + + GE+E ++ F A
Sbjct: 40 GLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA 99
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
+ AP ++ D +D LC R+ + R+++ L+T++D L Q V ++A T D
Sbjct: 100 KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDI 158
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLL---TKVPHSLSTDQIQQVA--FITHGF 181
+D ++ PGRLD+ + + +P R AIL + TK P + ++ +A +
Sbjct: 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVN-LEAIAGDLRCDCY 217
Query: 182 VGGDLATLLSNATSALLVETEGTGQVLSYDGVMR--------ALDHVKPSAMRQVLV 230
G DL+ L+ A+ L + + + G ++ A V+ S ++ +
Sbjct: 218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQI 274
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 130 bits (330), Expect = 4e-36
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 225 MRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCS 284
+L E PNVKW D+ G + K L+++V P+K P F KP GIL++GPPG
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTG 63
Query: 285 KTMIAKALATESKLNFISVK 304
K+ +AKA+ATE+ F SV
Sbjct: 64 KSYLAKAVATEANSTFFSVS 83
Score = 118 bits (299), Expect = 1e-31
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 4/187 (2%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F A
Sbjct: 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 106
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
++ PS++ +D +D L R + E RR+ + L+ Q++ + V++L T
Sbjct: 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDL 186
+D ++R R ++ I +P+P R + + P L+ + + + +T G+ G D+
Sbjct: 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDI 224
Query: 187 ATLLSNA 193
A ++ +A
Sbjct: 225 AVVVKDA 231
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 128 bits (325), Expect = 1e-35
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 221 KPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGP 280
+ +++ V+W+DI GQD K L++ V P PE F L P +G+L+FGP
Sbjct: 4 VQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGP 62
Query: 281 PGCSKTMIAKALATESKLNFISVK 304
PG KT++A+A+ATE F+++
Sbjct: 63 PGNGKTLLARAVATECSATFLNIS 86
Score = 115 bits (289), Expect = 3e-30
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 17/248 (6%)
Query: 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72
G+L++G G GKT L ++A+ + I A + SK+ G+ E ++A F A
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ 113
Query: 73 PSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQAC--VVLLAVTTSLDNVD 128
PS++ +D +D L + R+ S+ E RRL + + + D L +V+LA T +D
Sbjct: 114 PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLAT 188
+ R + + + +P R +L+ LL K L T+ ++++A IT G+ G DL
Sbjct: 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231
Query: 189 LLSNA---------TSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239
L +A + + ++ +L ++ S Q L KWS
Sbjct: 232 LAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY--EKWSQ 289
Query: 240 IGGQDEVK 247
G +K
Sbjct: 290 DYGDITIK 297
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 128 bits (323), Expect = 2e-35
Identities = 42/84 (50%), Positives = 62/84 (73%), Gaps = 2/84 (2%)
Query: 220 VKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFG 279
++ AM + E PNV++ DIGG ++ ++R+ VE PLKHPE F ++GI+PP+GIL++G
Sbjct: 1 MRAKAME--VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYG 58
Query: 280 PPGCSKTMIAKALATESKLNFISV 303
PPG KT++AKA+ATE+ FI V
Sbjct: 59 PPGTGKTLLAKAVATETNATFIRV 82
Score = 112 bits (282), Expect = 2e-29
Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 7/186 (3%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
G++ GIL+YG GTGKT L ++A+ + + +++ KF GE +K F A
Sbjct: 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLA 106
Query: 69 LDHAPSLLLLDNLDVLCTGRNRS----DQE-RRLLSCLVTQVDRLHELQACVVLLAVTTS 123
+ APS++ +D +D + R + D+E +R L L+ ++D ++ A T
Sbjct: 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGA-TNR 165
Query: 124 LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVG 183
D +D ++ PGR D+ IE+P P R IL K+ + + ++++A +T G VG
Sbjct: 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN-LEEIAKMTEGCVG 224
Query: 184 GDLATL 189
+L +
Sbjct: 225 AELKAI 230
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 128 bits (323), Expect = 9e-35
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 218 DHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILM 277
+ M +++ P V W DI G + K +++ V WP+ P+ F L PP+GIL+
Sbjct: 64 PKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILL 122
Query: 278 FGPPGCSKTMIAKALATESKLNFISVK 304
FGPPG KT+I K +A++S F S+
Sbjct: 123 FGPPGTGKTLIGKCIASQSGATFFSIS 149
Score = 119 bits (299), Expect = 2e-31
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 16/239 (6%)
Query: 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72
GIL++G GTGKT + +AS I + + SK+ GE E ++A F A
Sbjct: 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ 176
Query: 73 PSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQAC-VVLLAVTTSLDNVDV 129
P+++ +D +D L + R + E RR+ + + Q+D ++++ T +D
Sbjct: 177 PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236
Query: 130 SLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATL 189
+ R RL + + +P+P R I+ L++K LS ++I+Q+ + F G D+ L
Sbjct: 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294
Query: 190 LSNA-------TSALLVETEGTGQV--LSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239
A + T QV ++Y A V+PS + L W+
Sbjct: 295 CREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLEL--YENWNK 351
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 128 bits (323), Expect = 1e-34
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 200 ETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLK 259
T T + ++ M +++ VK+ DI GQD K L++ V P
Sbjct: 77 PTTATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSL 136
Query: 260 HPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
PE F L P RG+L+FGPPG KTM+AKA+A ES F ++
Sbjct: 137 RPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180
Score = 115 bits (289), Expect = 9e-30
Identities = 58/246 (23%), Positives = 108/246 (43%), Gaps = 16/246 (6%)
Query: 13 CNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72
G+L++G G GKT L ++A+ I A + SK+ GE E ++A F A +
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQ 207
Query: 73 PSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQAC-VVLLAVTTSLDNVDV 129
PS++ +D +D L R + + RRL + + + D + V+++ T +D
Sbjct: 208 PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDE 267
Query: 130 SLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATL 189
++ R + + + +P+ + R +L LL K L+ ++ Q+A +T G+ G DL L
Sbjct: 268 AVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325
Query: 190 LSNA-------TSALLVETEGTGQV--LSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDI 240
+A V+ ++ + +L +K S Q L ++W+
Sbjct: 326 AKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAY--IRWNKD 383
Query: 241 GGQDEV 246
G V
Sbjct: 384 FGDTTV 389
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 127 bits (320), Expect = 9e-34
Identities = 61/265 (23%), Positives = 116/265 (43%), Gaps = 21/265 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT-VVIQVADMFSKFYGEAEFRLKAAFDA 67
GIL++G GTGK+ L ++A+ T I +D+ SK+ GE+E +K F
Sbjct: 163 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 222
Query: 68 ALDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTSLD 125
A ++ PS++ +D +D LC R+ ++ E RR+ + + Q+ + +++L T
Sbjct: 223 ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282
Query: 126 NVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
+D ++R R ++ I +P+P RAA+ L +SL+ Q++ T G+ G D
Sbjct: 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGAD 340
Query: 186 LATL-----------LSNATSALLVETEG-TGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233
++ + + +AT V + ++ P A+ ++VP
Sbjct: 341 ISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVP 400
Query: 234 NVKWS--DIGGQD--EVKLKLRQSV 254
K + D + +V
Sbjct: 401 GDKLLEPVVSMWDMLRSLSSTKPTV 425
Score = 118 bits (297), Expect = 1e-30
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 191 SNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKL 250
+ V+ +G + ++ +++E PNVKWSD+ G + K L
Sbjct: 87 VKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEAL 146
Query: 251 RQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL-NFISVK 304
+++V P+K P F P RGIL+FGPPG K+ +AKA+ATE+ F S+
Sbjct: 147 KEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 124 bits (313), Expect = 1e-33
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
+++E PNVKWSD+ G + K L+++V P+K P F P RGIL+FGPPG K+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSY 60
Query: 288 IAKALATESKL-NFISVK 304
+AKA+ATE+ F S+
Sbjct: 61 LAKAVATEANNSTFFSIS 78
Score = 122 bits (309), Expect = 5e-33
Identities = 64/278 (23%), Positives = 121/278 (43%), Gaps = 22/278 (7%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHT-VVIQVADMFSKFYGEAEFRLKAAFDA 67
GIL++G GTGK+ L ++A+ T I +D+ SK+ GE+E +K F
Sbjct: 41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100
Query: 68 ALDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTSLD 125
A ++ PS++ +D +D LC R+ ++ E RR+ + + Q+ + +++L T
Sbjct: 101 ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160
Query: 126 NVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGD 185
+D ++R R ++ I +P+P RAA+ L +SL+ +++ T G+ G D
Sbjct: 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218
Query: 186 LATL-----------LSNATSALLVETEG-TGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233
++ + + +AT V D ++ P A+ ++VP
Sbjct: 219 ISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVP 278
Query: 234 NVKWSD--IGGQD--EVKLKLRQSV-EWPLKHPEAFAR 266
K + + D + +V E L + F
Sbjct: 279 GDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 123 bits (311), Expect = 4e-33
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 200 ETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLK 259
+ Q D ++ + +L E PNVKW D+ G + K L+++V P+K
Sbjct: 13 GNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 72
Query: 260 HPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
P F + KP GIL++GPPG K+ +AKA+ATE+ F SV
Sbjct: 73 FPHLF-KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116
Score = 120 bits (303), Expect = 6e-32
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 4/187 (2%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
K +GIL+YG GTGK+ L ++A+ + +D+ SK+ GE+E +K F A
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
++ PS++ +D +D L R + E RR+ + L+ Q++ + V++L T
Sbjct: 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDL 186
+D ++R R ++ I +P+P R + + P L+ + + + +T G+ G D+
Sbjct: 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDI 257
Query: 187 ATLLSNA 193
A ++ +A
Sbjct: 258 AVVVKDA 264
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 94.5 bits (235), Expect = 1e-22
Identities = 30/201 (14%), Positives = 69/201 (34%), Gaps = 25/201 (12%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
L+ +K + I+G G GK+ + M ++ +++ ++ S GE ++
Sbjct: 28 LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQR 87
Query: 65 FDAALD----HAPSLLLLDNLDVLCTGRNRSDQER-------RLLSCLV-----TQVDRL 108
+ A + L +++LD + Q L + Q+ +
Sbjct: 88 YREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 147
Query: 109 HELQAC--VVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSL 166
+ Q V ++ + L GR+++ P+R+ R + + +
Sbjct: 148 YNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCT----GIFRTD 201
Query: 167 STDQIQQVAFITHGFVGGDLA 187
+ + V I F G +
Sbjct: 202 NVP-AEDVVKIVDNFPGQSID 221
Score = 85.6 bits (212), Expect = 1e-19
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 239 DIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298
+ G + + V K IK P + ++G G K+ + + + +
Sbjct: 5 KLDGFYIAPAFMDKLVVHITK--NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 299 NFISVK 304
N I +
Sbjct: 63 NPIMMS 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 91.3 bits (227), Expect = 1e-21
Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 10/181 (5%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR-LKAAFDAALDHAP 73
+L+ G +GKT+L +A + I D F A+ + +K FD A
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQL 125
Query: 74 SLLLLDNLDVLCTGR-NRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLR 132
S +++D+++ L +L L+ + + ++++ T+ D + +
Sbjct: 126 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ-EME 184
Query: 133 TPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHG---FVGGDLATL 189
I VP+ +L L + +A G ++G +
Sbjct: 185 MLNAFSTTIH--VPNIATGEQLLEALELLGN--FKDKERTTIAQQVKGKKVWIGIKKLLM 240
Query: 190 L 190
L
Sbjct: 241 L 241
Score = 88.3 bits (219), Expect = 1e-20
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 214 MRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPR 273
+ +KP A + + + I + ++ E ++ + R P
Sbjct: 10 HGSTMDIKP-AFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLV 65
Query: 274 GILMFGPPGCSKTMIAKALATESKLNFISV 303
+L+ GPP KT +A +A ES FI +
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKI 95
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 80.4 bits (199), Expect = 7e-18
Identities = 33/70 (47%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 234 NVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALA 293
V + D+ G E KL++R+ V++ LK PE F +LG K P+G L+ GPPGC KT++AKA+A
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 294 TESKLNFISV 303
TE+++ F+++
Sbjct: 61 TEAQVPFLAM 70
Score = 72.7 bits (179), Expect = 4e-15
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 14/193 (7%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G L+ G G GKT L ++A+ +V + + A+ G R+++ F A AP
Sbjct: 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPC 100
Query: 75 LLLLDNLDVLCTGRNRS--------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
++ +D +D + G+ RS +E + L+ L+ ++D + V++LA T D
Sbjct: 101 IVYIDEIDAV--GKKRSTTMSGFSNTEEEQTLNQLLVEMDGM-GTTDHVIVLASTNRADI 157
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQV-AFITHGFVGGD 185
+D +L PGRLD+ + + +P+ +R I L + + S+ Q A +T GF G D
Sbjct: 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217
Query: 186 LATLLSNATSALL 198
+A + + A AL
Sbjct: 218 IANICNEA--ALH 228
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 79.7 bits (197), Expect = 1e-17
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+L+ G GTGKT L ++A KV I +D F G R++ F+ A AP
Sbjct: 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPC 106
Query: 75 LLLLDNLDVLCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127
++ +D +D + GR R D+ + L+ ++ ++D E ++++A T D +
Sbjct: 107 IIFIDEIDAV--GRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVL 163
Query: 128 DVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLA 187
D +L PGR D+++ + +P R IL + +VP + D +A T GF G DLA
Sbjct: 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTPGFSGADLA 222
Query: 188 TLLSNATSALL 198
L++ A AL
Sbjct: 223 NLVNEA--ALF 231
Score = 78.5 bits (194), Expect = 3e-17
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
++D+ G DE K ++ + VE+ L+ P F +LG K P+G+LM GPPG KT++AKA+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 293 ATESKLNFISV 303
A E+K+ F ++
Sbjct: 66 AGEAKVPFFTI 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 79.3 bits (196), Expect = 2e-17
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+L+ G G GKT L ++A +V + +D F G R++ F+ A HAP
Sbjct: 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110
Query: 75 LLLLDNLDVLCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127
++ +D +D + GR R D+ + L+ L+ ++D E +V++A T D +
Sbjct: 111 IVFIDEIDAV--GRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDIL 167
Query: 128 DVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLA 187
D +L PGR D++I + P R IL P + D + +A T GFVG DL
Sbjct: 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLE 226
Query: 188 TLLSNATSALL 198
LL+ A ALL
Sbjct: 227 NLLNEA--ALL 235
Score = 78.5 bits (194), Expect = 3e-17
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 226 RQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSK 285
VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG K
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGK 62
Query: 286 TMIAKALATESKLNFISV 303
T +A+A+A E+++ FI+
Sbjct: 63 THLARAVAGEARVPFITA 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 79.7 bits (197), Expect = 2e-17
Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 227 QVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKT 286
+VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 29 RVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKT 87
Query: 287 MIAKALATESKLNFISV 303
+A+A+A E+++ FI+
Sbjct: 88 HLARAVAGEARVPFITA 104
Score = 79.3 bits (196), Expect = 2e-17
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 13/191 (6%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+L+ G G GKT L ++A +V + +D F G R++ F+ A HAP
Sbjct: 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134
Query: 75 LLLLDNLDVLCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127
++ +D +D + GR R D+ + L+ L+ ++D E +V++A T D +
Sbjct: 135 IVFIDEIDAV--GRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDIL 191
Query: 128 DVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLA 187
D +L PGR D++I + P R IL P + D + +A T GFVG DL
Sbjct: 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTPGFVGADLE 250
Query: 188 TLLSNATSALL 198
LL+ A ALL
Sbjct: 251 NLLNEA--ALL 259
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 79.2 bits (196), Expect = 2e-17
Identities = 33/73 (45%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E PNV++ D+ G +E K ++ + V++ LK+PE +A LG K P+G+L+ GPPG KT++AK
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 291 ALATESKLNFISV 303
A+A E+ + F S+
Sbjct: 63 AVAGEAHVPFFSM 75
Score = 78.1 bits (193), Expect = 6e-17
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+L+ G GTGKT L ++A V + + F G R++ F+ A APS
Sbjct: 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPS 105
Query: 75 LLLLDNLDVLCTGRNRS--------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
++ +D +D + G++R+ D+ + L+ L+ ++D A V++LA T +
Sbjct: 106 IIFIDEIDAI--GKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163
Query: 127 VDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDL 186
+D +L PGR D+++ + P + R IL + V + + +Q+VA +T G G DL
Sbjct: 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN-LQEVAKLTAGLAGADL 222
Query: 187 ATLLSNATSALL 198
A +++ A ALL
Sbjct: 223 ANIINEA--ALL 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 78.0 bits (193), Expect = 2e-16
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 228 VLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTM 287
VL E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 288 IAKALATESKLNFISV 303
+A+A+A E+++ FI+
Sbjct: 80 LARAVAGEARVPFITA 95
Score = 56.8 bits (138), Expect = 2e-09
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+L+ G G GKT L ++A +V + +D F G R++ F+ A HAP
Sbjct: 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 125
Query: 75 LLLLDNLDVLCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127
++ +D +D + GR R D+ + L+ L+ ++D E +V++A T D +
Sbjct: 126 IVFIDEIDAV--GRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDIL 182
Query: 128 DVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFITHGFVGGDL 186
D +L PGR D++I + P R IL P L+ D + +A T GFVG DL
Sbjct: 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGADL 240
Query: 187 ATLLSNATSALL 198
LL+ A ALL
Sbjct: 241 ENLLNEA--ALL 250
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 75.7 bits (187), Expect = 2e-15
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
V + D+GG +E +L++ VE+ LK P F R+G + P+GIL+ GPPG KT++A+A+
Sbjct: 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69
Query: 293 ATESKLNFISV 303
A E+ + F +
Sbjct: 70 AGEANVPFFHI 80
Score = 54.5 bits (132), Expect = 1e-08
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 15/192 (7%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
GIL+ G GTGKT L ++A V I +D F G R++ F A HAP
Sbjct: 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPC 110
Query: 75 LLLLDNLDVLCTGRNRS-------DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNV 127
++ +D +D + GR+R D+ + L+ L+ ++D + + ++++A T D +
Sbjct: 111 IVFIDEIDAV--GRHRGAGLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDIL 167
Query: 128 DVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD-QIQQVAFITHGFVGGDL 186
D +L PGR D++I + P R IL P L+ D ++ +A T GFVG DL
Sbjct: 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADL 225
Query: 187 ATLLSNATSALL 198
L++ A ALL
Sbjct: 226 ENLVNEA--ALL 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 2e-12
Identities = 51/309 (16%), Positives = 101/309 (32%), Gaps = 75/309 (24%)
Query: 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV------IQVA---------D 48
AL ++ +LI GV G+GKT + + KV + + + +
Sbjct: 143 ALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 49 MFSKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVT--QVD 106
M K +++ + + DH+ ++ L + + R + + +CL+ V
Sbjct: 201 MLQKLL----YQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 107 RLHELQA----CVVLLAVTTS----LDNVDVSLRTPGRLDQEIELPVP--SRDQRAAILH 156
A C +L +TT D + + T LD P + L
Sbjct: 255 NAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 157 CLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSA----LLVETEGTGQVLSYDG 212
C +P + T T+ +A + + + V + ++
Sbjct: 313 CRPQDLPREVLT---------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--- 360
Query: 213 VMRALDHVKPSAMRQVLVEV----PNVK---------WSDIGGQDE----VKLKLRQSVE 255
+L+ ++P+ R++ + P+ W D+ D KL VE
Sbjct: 361 --SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 256 WPLKHPEAF 264
K P+
Sbjct: 419 ---KQPKES 424
Score = 54.9 bits (131), Expect = 1e-08
Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 46/199 (23%)
Query: 115 VVLLAVTTSLDNVDVSLRTPGRL-DQEIE--LPVPSRDQRA-AILHCLLTKVPHSLSTDQ 170
V A + D DV L +EI+ + + LL+K +
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-----QEEM 78
Query: 171 IQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRAL--DHVKPSAMRQV 228
+Q+ FV L +Y +M + + +PS M ++
Sbjct: 79 VQK-------FVEEVLRI--------------------NYKFLMSPIKTEQRQPSMMTRM 111
Query: 229 LVEVPNVKWSDIGGQDEVKLKL-RQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKT- 286
+E + ++D Q K + R L+ +A L +P + +L+ G G KT
Sbjct: 112 YIEQRDRLYND--NQVFAKYNVSRLQPYLKLR--QALLEL--RPAKNVLIDGVLGSGKTW 165
Query: 287 MIAKALATESKLNFISVKI 305
+ + + KI
Sbjct: 166 VALDVCLSYKVQCKMDFKI 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-08
Identities = 53/315 (16%), Positives = 95/315 (30%), Gaps = 107/315 (33%)
Query: 18 IYGVNGTGKTSLIHSLASHMK--VHTVVIQVADMFSKFYGEAEFRLKAAF---------- 65
+ G S + H + V V I D + F+ + F
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 66 ----------DAALDH---APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDR-LHEL 111
+ +L++ PS +L + + + V + + L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLS------ISNLTQEQ-----VQDYVNKTNSHLPAG 363
Query: 112 QACVVLLA-------VT---TSLDNVDVSLRT---PGRLDQEIELPVPSRDQRAAILHCL 158
+ + L V+ SL ++++LR P LDQ +P +++ +
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS---RIPFSERKLKFSNRF 420
Query: 159 L-TKVP-HS--L--STDQIQQ-VAFITHGFVGGDLATLLSNATSALLVETEGTGQVLS-Y 210
L P HS L ++D I + + F D+ V +
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----------------PVYDTF 463
Query: 211 DGV-MRALDHVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGI 269
DG +R L + ++ +P VKW E + + + H
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLP-VKW-------ETTTQFKAT------H--------- 500
Query: 270 KPPRGILMFGPPGCS 284
IL FGP G S
Sbjct: 501 -----ILDFGPGGAS 510
Score = 49.7 bits (118), Expect = 7e-07
Identities = 58/322 (18%), Positives = 102/322 (31%), Gaps = 81/322 (25%)
Query: 21 VNGTGKTSLIHSLASHMKVHTVVIQV-ADMFSKFYGEAEFRLKAAFDAALDHAPSLLLLD 79
++ L L SH + V+ V F F +L+ F+ L D
Sbjct: 1 MDAYSTRPLT--L-SHGSL-EHVLLVPTASF--FIAS---QLQEQFNKILPEPTEGFAAD 51
Query: 80 NLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTTS-----LDNVDV-SL 131
+ + E + L + + V+ Q VL T L+ D+ +L
Sbjct: 52 D-------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 132 RTPGRLDQEIELPVPSRDQ--RAAILHCLLTKVPHS-------LSTDQIQQVAFITHGFV 182
+L QE + + + + I ++ K P + F
Sbjct: 105 --AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-F- 160
Query: 183 GG------------DL--------ATLLSNATSAL--LVETEGTGQVLSYDG--VMRALD 218
GG DL L+ + L L+ T + + G ++ L+
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 219 HVKPSAMRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFAR-LGIKPP--RGI 275
+ + + L+ +P + IG + Q L H A+ LG P R
Sbjct: 221 NPSNTPDKDYLLSIP-ISCPLIG--------VIQ-----LAHYVVTAKLLGFTPGELRSY 266
Query: 276 LMFGPPGCSKTMI-AKALATES 296
L G G S+ ++ A A+A
Sbjct: 267 LK-GATGHSQGLVTAVAIAETD 287
Score = 47.4 bits (112), Expect = 4e-06
Identities = 54/322 (16%), Positives = 101/322 (31%), Gaps = 98/322 (30%)
Query: 30 IHSLASHM--KVHTVVIQVADMFSKFYGEAEFRLK---------AAFDAALDHAPSLLLL 78
IH+LA+ + + T +++ ++ + A K A F A + L+ +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 79 --------DNLDVLCTGRNRSDQERRLLSCLVTQV-DRLHELQACVVLLAVTTSL--DNV 127
D + L R+ L+ L+ + L EL + +
Sbjct: 160 FGGQGNTDDYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTT---LDAEKVFTQGL 213
Query: 128 DVS--LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQ-----VAFITHG 180
++ L P P +D L +P S + Q V G
Sbjct: 214 NILEWLENPS--------NTPDKD--------YLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 181 FVGGDLATLLSNAT-------SALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVP 233
F G+L + L AT +A+ + + + + V +A+ VL
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAI---------TVLF--- 304
Query: 234 NVKWSDIG--GQDEV-KLKLRQS-VEWPLKHPEAFARLGIKPPRGILMFGPPGCSK---- 285
+ IG + L S +E L++ E G+ P M ++
Sbjct: 305 ---F--IGVRCYEAYPNTSLPPSILEDSLENNE-----GVPSP----MLSISNLTQEQVQ 350
Query: 286 TMIAKA---LATESKLNFISVK 304
+ K L ++ IS+
Sbjct: 351 DYVNKTNSHLPAGKQV-EISLV 371
Score = 33.1 bits (75), Expect = 0.13
Identities = 48/286 (16%), Positives = 91/286 (31%), Gaps = 96/286 (33%)
Query: 44 IQVADMFSKFYGEAEFRLKAAFDAALDHAP-----SLL--LLDN---LDVLCTGRNRSDQ 93
Q M Y ++ + ++ A +H S+L +++N L + G + +
Sbjct: 1626 SQEQGMGMDLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-KGKR 1683
Query: 94 ERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTP-GRLDQEIELPVPSRDQRA 152
R S ++ + +L+ + + + R+ G L Q A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHST--SYTFRSEKGLLSA------TQFTQPA 1735
Query: 153 ------AILHCLLTK--VP-------HSL---S-----------TDQIQQVAF------- 176
A L +K +P HSL + ++ V +
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 177 -ITHGFVG-----------GDLATLLSNATSALLVET--EGTGQVLS---YD-------- 211
+ +G G +A S +VE + TG ++ Y+
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA 1855
Query: 212 -GVMRALDHVKPSAMRQVLVEVPN-VKWSDIGGQDEVKLKLRQSVE 255
G +RALD + V N +K I D ++L+ S+E
Sbjct: 1856 AGDLRALD---------TVTNVLNFIKLQKI---DIIELQKSLSLE 1889
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 53.6 bits (128), Expect = 2e-08
Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 26/213 (12%)
Query: 1 MDYALQSNGMKKCNG---ILIYGVNGTGKTSLIHSLASHM-------KVHTVVIQVADMF 50
++ A Q G+ + G GTGKT++ +A + K H V + D+
Sbjct: 52 VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111
Query: 51 SKFYGEAEFRLKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHE 110
++ G + K A+ +L +D L N D + + L+ ++ +
Sbjct: 112 GQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168
Query: 111 LQACVVLLAVTTSLDNVDVSLRTPG---RLDQEIELPVPSRDQRAAILHCLLTKVPHSLS 167
V+L ++N S PG R+ IE P S ++ I +L + ++
Sbjct: 169 -DLVVILAGYADRMENFFQS--NPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMT 225
Query: 168 TDQIQQVAFI------THGFV-GGDLATLLSNA 193
+ + F + L A
Sbjct: 226 PEAETALRAYIGLRRNQPHFANARSIRNALDRA 258
Score = 44.4 bits (104), Expect = 2e-05
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPP---RGILMFGPPGCSKTM 287
EV ++ G VK ++R++ L A +LG+ + G PG KT
Sbjct: 24 EVLEELDRELIGLKPVKDRIRETAAL-LLVERARQKLGLAHETPTLHMSFTGNPGTGKTT 82
Query: 288 IAKALA 293
+A +A
Sbjct: 83 VALKMA 88
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 48.6 bits (115), Expect = 1e-06
Identities = 30/245 (12%), Positives = 69/245 (28%), Gaps = 46/245 (18%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK-----------VHTVVIQVADMFSKFYGEAEFRLKAA 64
L G+ GTGKT + + + ++ V + ++
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 65 FD------------------AALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVD 106
+ +++ LD +D L R +LL
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLL-------- 159
Query: 107 RLHELQACVVLLAVTTSLDNVDVSL-RTPGRLDQEIELPVPSRDQRAAILH--CLLTKVP 163
A + ++ ++ ++ D R L + +Q IL +
Sbjct: 160 ---RSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK 216
Query: 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223
+ + + +A I+ G + +A L G + + V +A+ +
Sbjct: 217 GTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI---IRKEHVDKAIVDYEQE 273
Query: 224 AMRQV 228
+ +
Sbjct: 274 RLIEA 278
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 46.4 bits (110), Expect = 7e-06
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 238 SDIGGQDEVKLKLRQSVE-WPLKHPEAFARLGIKPP---RGILMFGPPGCSKTMIAKALA 293
+ G +KL+ + W +F G R +++GPPG KT A +A
Sbjct: 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98
Query: 294 TESKLNFI 301
E + +
Sbjct: 99 QELGYDIL 106
Score = 39.9 bits (93), Expect = 9e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38
+G ++YG G GKT+ H +A +
Sbjct: 71 KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 45.4 bits (107), Expect = 1e-05
Identities = 44/250 (17%), Positives = 94/250 (37%), Gaps = 40/250 (16%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMK----------------------VHTVVIQVADMFS 51
N I IYG+ GTGKT+++ + S + V +++ D+
Sbjct: 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV 105
Query: 52 KFYGEAEFRLKAAFDAALDHA--PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH 109
F G + L A+ +++LD +D + + + ++ ++ R++
Sbjct: 106 PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK---KYNDD------ILYKLSRIN 156
Query: 110 EL--QACVVLLAVTTSLDNVDVSL-RTPGRLD-QEIELPVPSRDQRAAILHCLLTKV--P 163
++ + + +T + VD+ R L +EI P + ++ IL P
Sbjct: 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP 216
Query: 164 HSLSTDQIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPS 223
L + I+ A + G L S + E +V + V A + ++
Sbjct: 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKV-KEEYVYMAKEEIERD 275
Query: 224 AMRQVLVEVP 233
+R +++ +P
Sbjct: 276 RVRDIILTLP 285
Score = 27.3 bits (60), Expect = 6.5
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 270 KPPRGILMFGPPGCSKTMIAKA----LATESKLNFISVKI 305
+ P I ++G G KT + K L + F V I
Sbjct: 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 45.0 bits (106), Expect = 2e-05
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 233 PNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
S + GQ+ + VE + R +L+ GPPG KT +A A+
Sbjct: 32 AKQAASGLVGQENAREACGVIVE--------LIKSKKMAGRAVLLAGPPGTGKTALALAI 83
Query: 293 ATE--SKLNFISV 303
A E SK+ F +
Sbjct: 84 AQELGSKVPFCPM 96
Score = 33.0 bits (75), Expect = 0.13
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 15 GILIYGVNGTGKTSLIHSLASHM--KVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69
+L+ G GTGKT+L ++A + KV + ++++S + E L F A+
Sbjct: 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRAI 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 42.9 bits (100), Expect = 7e-05
Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 42/262 (16%)
Query: 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMK----VHTVVI---------QVADMF 50
L++ G + G GTGKT + L K V I +
Sbjct: 36 WLRNPGHHYPR-ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 94
Query: 51 SKFYGEAEFRLKAAFDAALDH---------APSLLLLDNLDVLCTGRNRSDQERRLLSCL 101
++ R + D L L+LD+ L D +
Sbjct: 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----APDILSTFIRLG 149
Query: 102 VTQVDRLHELQACVVLLAVTTSLDNVDVSL-RTPGRL-DQEIELPVPSRDQRAAILHCLL 159
+ + L+ V + ++ T G + I ++DQ IL
Sbjct: 150 ---QEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206
Query: 160 TKVPH--SLSTDQIQQVAFIT-----HGFVGGDLATLLSNATSA-LLVETEGTGQVLSYD 211
S S D +Q +A IT GD + + + G + D
Sbjct: 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 266
Query: 212 GVMRALDHVKPSAMRQVLVEVP 233
V ++ V +VL+ +P
Sbjct: 267 -VRKSSKEVLFGISEEVLIGLP 287
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 40.1 bits (94), Expect = 3e-04
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASH---MKVHTVVIQVADMFSKFYGEA 57
+ + KK G+ ++G G GKT L+ ++A+ V ++++ V ++F +
Sbjct: 42 ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL---K 98
Query: 58 EFRLKAAFDAALDHA--PSLLLLDNLDVLCTGRNRSDQERRLLSCLV 102
+ LD+ +L+LD D L S + ++
Sbjct: 99 HSLQDQTMNEKLDYIKKVPVLMLD--D-LGAEAMSSWVRDDVFGPIL 142
Score = 33.1 bits (76), Expect = 0.070
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 269 IKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
K +G+ + G G KT + A+A E +S I
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 38.3 bits (89), Expect = 0.002
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 22/93 (23%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKT----SLIHSLASHMKVHTVVIQVADMFSKFYGE 56
+D+ Q ++ G+ +YG G GK+ ++ H L+ V T ++
Sbjct: 141 LDFVEQYPSAEQ-KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI----- 194
Query: 57 AEFRLKAAFD--------AALDHAPSLLLLDNL 81
+K A A+ + P +L+LD++
Sbjct: 195 ---DVKNAISNGSVKEEIDAVKNVP-VLILDDI 223
Score = 31.0 bits (70), Expect = 0.50
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATE 295
+G+ ++G G K+ + A+A E
Sbjct: 150 AEQKGLYLYGDMGIGKSYLLAAMAHE 175
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 38.2 bits (89), Expect = 0.002
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALA 293
S I GQ+++KL L + P G+L+FG G K+ +ALA
Sbjct: 24 SAIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGKSTAVRALA 66
Score = 26.7 bits (59), Expect = 9.8
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 15 GILIYGVNGTGKTSLIHSLAS 35
G+L++G GTGK++ + +LA+
Sbjct: 47 GVLVFGDRGTGKSTAVRALAA 67
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 37.9 bits (88), Expect = 0.004
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
IL+ GVNG GKT+ I LA + +V++ D F
Sbjct: 296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 36.5 bits (84), Expect = 0.005
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 257 PLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
PL PE + P IL+ G PG KT + K LA++S L +I+V
Sbjct: 2 PLGSPEF-----MLLPN-ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
Score = 29.6 bits (66), Expect = 0.88
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK 52
M N IL+ G G GKT+L LAS + I V D+ +
Sbjct: 9 MLLPN-ILLTGTPGVGKTTLGKELASKSGLK--YINVGDLARE 48
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 36.1 bits (83), Expect = 0.006
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALATESKLNFIS 302
G++ P I++ G P KT +++ALAT +L +S
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35
Score = 32.6 bits (74), Expect = 0.10
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEF-------RL 61
GM+ I++ G TGKT+L +LA+ + ++ + + R+
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGL--RLPLLSKDAFKEVMFDGLGWSDREWSRRV 58
Query: 62 KAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVD 106
A L H + +L ++ R D + + L T
Sbjct: 59 GATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAP 103
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 36.8 bits (86), Expect = 0.006
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
I++ GVNGTGKT+ LA +VV+ AD F
Sbjct: 107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 36.9 bits (85), Expect = 0.006
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 8/139 (5%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
+ K L G +GKT+L +L + + + F F
Sbjct: 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELG---VAIDQFLVV 221
Query: 69 LDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLV-TQVDRLHE--LQACVVLLAVTTSLD 125
+ G N D R L V +++ H VT +
Sbjct: 222 FEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEY 281
Query: 126 NVDVSLRTPGRLDQEIELP 144
+V +L+ R ++I+
Sbjct: 282 SVPKTLQA--RFVKQIDFR 298
Score = 28.5 bits (63), Expect = 3.0
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFISV 303
R L GP KT +A AL ++V
Sbjct: 170 RYWLFKGPIDSGKTTLAAALLELCGGKALNV 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 36.5 bits (85), Expect = 0.008
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
I+ G NG+GKT+ I LA+ +K +VVI +D F
Sbjct: 132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 36.4 bits (85), Expect = 0.008
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
I+I GVNG GKT+ + LA +K V++ D F
Sbjct: 103 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 36.5 bits (85), Expect = 0.009
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
I+I GVNG GKT+ + LA +K V++ D F
Sbjct: 160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 36.4 bits (85), Expect = 0.009
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
++ GVNGTGKT+ + +A++ + V+I AD F
Sbjct: 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 36.0 bits (84), Expect = 0.011
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMF 50
+L+ GVNG GKT+ I L + + V+ D F
Sbjct: 105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.8 bits (82), Expect = 0.012
Identities = 13/103 (12%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
L+ G+ GK+SL+ + + ++I +++++ L + +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKF 91
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLL 118
+ + ++ L D EL +V
Sbjct: 92 QSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 36.0 bits (84), Expect = 0.014
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
++++GPPG KT +A+ +A + + +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 34.7 bits (80), Expect = 0.017
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 11 KKCNGILIYGVNGTGKT----SLIHSLASHMKVHTVVIQVADMFSKFYGE-AEFRLKAAF 65
++ G+ G G GKT + + ++ + D+ + E +
Sbjct: 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFL 95
Query: 66 DAALDHAPSLLLLDNL 81
L+ +L+LD+L
Sbjct: 96 KTVLN--SPVLVLDDL 109
Score = 30.8 bits (70), Expect = 0.36
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATE 295
+ +G+ G PG KT +A A
Sbjct: 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 35.5 bits (82), Expect = 0.018
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 266 RLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFIS 302
+ R +L+ G PG K+M+ +A+A +
Sbjct: 54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLE 90
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 35.2 bits (80), Expect = 0.022
Identities = 41/259 (15%), Positives = 87/259 (33%), Gaps = 45/259 (17%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMK-------------------------VHTVVIQ 45
+K + L+YG+ GTGKT++ + ++ V + + +
Sbjct: 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101
Query: 46 VADMFSKFYGEAEFRLKAAFDAALDH--APSLLLLDNLDVLCTGRNRSDQERRLLSCLVT 103
+ F G + + L +++LD +D L D L+
Sbjct: 102 AVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQD--------LLY 153
Query: 104 QVDRLHELQACVVLLAVTTSLDNVDVSLRTPGRL-----DQEIELPVPSRDQRAAILHCL 158
++ R+++ V +++ +++ R+ + E+ P + Q IL
Sbjct: 154 RITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213
Query: 159 LTK--VPHSLSTDQIQQVAFITHGFVGGDLATLLSNATSAL-LVETEGTGQVLSYDGVMR 215
+ P L D + A + GD L A + E +V V
Sbjct: 214 AEEAFNPGVLDPDVVPLCAALA-AREHGDARRALDLLRVAGEIAERRREERVRREH-VYS 271
Query: 216 ALDHVKPSAMRQVLVEVPN 234
A ++ + +V+ +P
Sbjct: 272 ARAEIERDRVSEVVRTLPL 290
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 34.5 bits (80), Expect = 0.026
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
++ GQDEV +L+ + P +L GPPG KT A ALA +
Sbjct: 17 DEVVGQDEVIQRLKG-----------YVERKNIP--HLLFSGPPGTGKTATAIALARD 61
Score = 32.2 bits (74), Expect = 0.15
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+L G GTGKT+ +LA
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 34.2 bits (79), Expect = 0.045
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
++ GQDEV +L+ + P +L GPPG KT A ALA +
Sbjct: 17 DEVVGQDEVIQRLKG-----------YVERKNIP--HLLFSGPPGTGKTATAIALARD 61
Score = 32.3 bits (74), Expect = 0.16
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+L G GTGKT+ +LA
Sbjct: 41 LLFSGPPGTGKTATAIALA 59
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 33.8 bits (77), Expect = 0.053
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
+ K N I ++G TGKT++ ++A + + V + F
Sbjct: 98 TKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENF 141
Score = 27.2 bits (60), Expect = 6.2
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 263 AFARLGIKPPRGILMFGPPGCSKTMIAKALATESKL 298
+A I +FGP KT IA+A+A
Sbjct: 95 GWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 33.3 bits (75), Expect = 0.062
Identities = 22/147 (14%), Positives = 46/147 (31%), Gaps = 10/147 (6%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAE--FRLKAAFDAALDHAP 73
IL+ G +G GKT++ + + V+I D F + +
Sbjct: 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVII-DGDSFRSQHPHYLELQQEYGKDSVEYTKDF 93
Query: 74 SLLLLDNLDVLCTGRNRS---DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVS 130
+ ++++L + + + R + L V L + T ++S
Sbjct: 94 AGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP---ELS 150
Query: 131 -LRTPGRLDQEIELPVPSRDQRAAILH 156
L T R ++ + H
Sbjct: 151 YLSTLIRYEELYIINPNQARATPKEHH 177
Score = 31.4 bits (70), Expect = 0.26
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISV 303
P IL+ G G KT I + E + N + +
Sbjct: 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVII 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 33.1 bits (76), Expect = 0.082
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
DI GQ+ + +L+ + + G P +L GPPG KT A ALA E
Sbjct: 25 DDIVGQEHIVKRLKH-----------YVKTGSMP--HLLFAGPPGVGKTTAALALARE 69
Score = 32.3 bits (74), Expect = 0.15
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+L G G GKT+ +LA
Sbjct: 49 LLFAGPPGVGKTTAALALA 67
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.4 bits (73), Expect = 0.10
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 261 PEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
++ A + P I++ G G K+ + +A+A FI
Sbjct: 7 YKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI 47
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.4 bits (73), Expect = 0.11
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATESK-LNFISVK 304
K IL+ G PG KT +A+ +A E + V
Sbjct: 9 KGIN-ILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43
Score = 32.0 bits (72), Expect = 0.15
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVV 43
ILI G GTGKTS+ +A+ + +
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQHL 40
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 33.0 bits (74), Expect = 0.11
Identities = 15/201 (7%), Positives = 53/201 (26%), Gaps = 42/201 (20%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK----------VHTVVI---------QVADMFSKFYGE 56
I + + K L++ + + + I + + +
Sbjct: 48 FYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107
Query: 57 AEFRLKAAFDAALDHA---------PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDR 107
+ +A + +L+L+ N + L + ++L
Sbjct: 108 ENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS--------EKILQYF---EKW 156
Query: 108 LHELQACVVLLAVTTSLDNVDVSL--RTPGRLD-QEIELPVPSRDQRAAILHCLLTKVPH 164
+ + + ++ V + + + EI+L +++ ++ L +
Sbjct: 157 ISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLK 216
Query: 165 SLSTDQIQQVAFITHGFVGGD 185
+ + +
Sbjct: 217 PFHVKVNDKKEMTIYNNIREG 237
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 32.4 bits (73), Expect = 0.11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
+P R +++ G G KT IA +A E+ L F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 32.8 bits (75), Expect = 0.11
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
SDI G E +L+Q A+ G P +++ G PG KT LA E
Sbjct: 21 SDIVGNKETIDRLQQ-----------IAKDGNMP--HMIISGMPGIGKTTSVHCLAHE 65
Score = 27.0 bits (60), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
++I G+ G GKT+ +H LA
Sbjct: 45 MIISGMPGIGKTTSVHCLA 63
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 33.2 bits (76), Expect = 0.12
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 275 ILMFGPPGCSKTMIAKALA 293
+ + GPPG +K++IA+ L
Sbjct: 44 VFLLGPPGIAKSLIARRLK 62
Score = 31.6 bits (72), Expect = 0.29
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 13 CNG-ILIYGVNGTGKTSLIHSLASHMK 38
+ + G G K+ + L +
Sbjct: 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 31.6 bits (72), Expect = 0.15
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
I++ GP C K+ +A L+ E K I
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELKYPII 30
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 32.4 bits (74), Expect = 0.16
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
++ GQ+EV +R+ F G P +L +GPPG KT ALA E
Sbjct: 25 DEVYGQNEVITTVRK-----------FVDEGKLP--HLLFYGPPGTGKTSTIVALARE 69
Score = 27.8 bits (62), Expect = 5.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+L YG GTGKTS I +LA
Sbjct: 49 LLFYGPPGTGKTSTIVALA 67
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 32.2 bits (74), Expect = 0.17
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 240 IGGQDEVKLKLRQSVEWPLKHPEAFARLGIK-PPRGILMFGPPGCSKTMIAKALATESKL 298
I GQ + K + ++ + + L + P+ ILM GP G KT IA+ LA +
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76
Query: 299 NFISVK 304
FI V+
Sbjct: 77 PFIKVE 82
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 32.3 bits (73), Expect = 0.17
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
LI G NG+GK+SL+ ++
Sbjct: 26 NLIIGQNGSGKSSLLDAI 43
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.5 bits (75), Expect = 0.18
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 265 ARLGIKPPR---GILMF-GPPGCSKTMIAKALA 293
AR G+K P+ G +F GP G KT +A+ALA
Sbjct: 510 ARAGLKDPKRPIGSFIFLGPTGVGKTELARALA 542
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.4 bits (73), Expect = 0.19
Identities = 13/84 (15%), Positives = 26/84 (30%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAP 73
L+ G+ TGK+S+I + + + + + + + Y + L
Sbjct: 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 90
Query: 74 SLLLLDNLDVLCTGRNRSDQERRL 97
L L G E +
Sbjct: 91 RLPSLLKALKNIQGIVIMGNEIKF 114
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 32.2 bits (74), Expect = 0.20
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPR---GILMF-GPPGCSKTMIAKALA 293
GQD+ L ++++ AR G+ G +F GP G KT + L+
Sbjct: 462 GQDKAIEALTEAIK--------MARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 31.6 bits (71), Expect = 0.20
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISV 303
+L+ G PG K+ IA+ALA + +
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHF 40
Score = 28.5 bits (63), Expect = 2.3
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKF 53
+L+ G G+GK+++ +LA+ V V +D +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGY 48
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 31.8 bits (73), Expect = 0.22
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 275 ILMFGPPGCSKTMIAKALA 293
IL+ GP G KT++A+ LA
Sbjct: 54 ILLIGPTGSGKTLLAETLA 72
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 31.9 bits (73), Expect = 0.22
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 272 PRGILMFGPPGCSKTMIAKALA 293
P+ ILM GP G KT IA+ LA
Sbjct: 50 PKNILMIGPTGVGKTEIARRLA 71
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.0 bits (71), Expect = 0.24
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
I+ G G K+ +A+ALA + L F+
Sbjct: 7 IVFIGFMGSGKSTLARALAKDLDLVFL 33
Score = 28.3 bits (64), Expect = 2.2
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTV----VIQ------VADMFSKFYGEAEF 59
+ K N + I G G+GK++L +LA + + + +I+ V+++F + E F
Sbjct: 3 LAK-NIVFI-GFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQ-KRENFF 59
Query: 60 R 60
R
Sbjct: 60 R 60
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 31.0 bits (71), Expect = 0.25
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 269 IKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
+ R I + GP G K+ I + LA + + F
Sbjct: 1 MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
Score = 26.7 bits (60), Expect = 7.3
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 13/62 (20%)
Query: 10 MK-KCNGILIYGVNGTGKTSLIHSLASHMKVHTV----VIQ------VADMFSKFYGEAE 58
M K N L+ G G GK+++ LA + + I+ V +F GE
Sbjct: 1 MAEKRNIFLV-GPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDL-EGEEG 58
Query: 59 FR 60
FR
Sbjct: 59 FR 60
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 31.5 bits (72), Expect = 0.29
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 275 ILMFGPPGCSKTMIAKALA 293
IL+ GP G KT++A+ LA
Sbjct: 75 ILLIGPTGSGKTLMAQTLA 93
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 31.4 bits (71), Expect = 0.31
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
G+ K N + G TGK+ L +SL + V+ A+ S F+
Sbjct: 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG--GSVLSFANHKSHFW 165
Score = 27.2 bits (60), Expect = 7.6
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPP--RGILMFGPPGCSKTMIAKALA 293
W I + Q++E + A P + GPP K+M+ +L
Sbjct: 95 WKSI-----LTFFNYQNIE-LITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.5 bits (70), Expect = 0.31
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA--FDAALDHAP 73
L+ G G+GKTSL ++ + + +VI D F + + + +K
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVID-NDTFKQQHPNFDELVKLYEKDVVKHVTPY 94
Query: 74 SLLLLDNLDVLCTGRNRS---DQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD 125
S + + + + + + + R + L + +
Sbjct: 95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 31.4 bits (72), Expect = 0.32
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 20/71 (28%)
Query: 236 KWSDIGGQDEVKLKLRQSVEW------PLKHPEAFARLGIKPPRGILMFGPPGCSKTMIA 289
+ GQ+ +K L + L H IL GP G KT +A
Sbjct: 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDH--------------ILFSGPAGLGKTTLA 72
Query: 290 KALATESKLNF 300
++ E N
Sbjct: 73 NIISYEMSANI 83
Score = 27.1 bits (61), Expect = 7.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH 40
IL G G GKT+L + ++ M +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSAN 82
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 31.4 bits (71), Expect = 0.39
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
+ + +E+ L+ + P P +L++GP G K AL
Sbjct: 14 NALSHNEELTNFLKSLSDQPRDLPH------------LLLYGPNGTGKKTRCMALLES 59
Score = 31.0 bits (70), Expect = 0.46
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHM 37
+ +L+YG NGTGK + +L +
Sbjct: 34 RDLPHLLLYGPNGTGKKTRCMALLESI 60
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 0.40
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 269 IKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
K I + G G KT + LA +K
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
Score = 28.7 bits (65), Expect = 1.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 10 MKKC--NGILIYGVNGTGKTSLIHSLASHMKVHTV----VIQ------VADMFSKFYGEA 57
MKK N LI G+ G GKTS+ LA K I+ +A +F GEA
Sbjct: 1 MKKNLTNIYLI-GLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEM-EGEA 58
Query: 58 EFR 60
FR
Sbjct: 59 GFR 61
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 30.6 bits (70), Expect = 0.40
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
+++ G G K+ +A+ L KL +
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVL 36
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 31.0 bits (71), Expect = 0.40
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ+ +K KLR +E A A+ +P +L+FGPPG KT +A +A E +N
Sbjct: 16 GQERLKQKLRVYLE-------A-AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66
Score = 27.1 bits (61), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH 40
+L++G G GKT+L H +A + V+
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVN 65
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 30.8 bits (69), Expect = 0.43
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38
+GM ++ G G+GKT+L +++
Sbjct: 8 HHHGMASM-IVVFVGTAGSGKTTLTGEFGRYLE 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 31.0 bits (71), Expect = 0.43
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 20/65 (30%)
Query: 242 GQDEVKLKLRQSVEW------PLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
GQ+ VK KL ++E L H +L+ GPPG KT +A +A+E
Sbjct: 29 GQENVKKKLSLALEAAKMRGEVLDH--------------VLLAGPPGLGKTTLAHIIASE 74
Query: 296 SKLNF 300
+ N
Sbjct: 75 LQTNI 79
Score = 27.1 bits (61), Expect = 8.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH 40
+L+ G G GKT+L H +AS ++ +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 0.46
Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 22/119 (18%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDH 71
+ + IYG+ G GK+ L V + + F G + D
Sbjct: 146 EPGWVTIYGMAGCGKSVL---------AAEAVRDHSLLEGCFSGGVHWVSIGKQDK---- 192
Query: 72 APSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQAC---VVLLAVTTSLDNV 127
+ L+ L NL + Q RL + DRL L LL LD+V
Sbjct: 193 SGLLMKLQNLCMRLDQEESFSQ--RLPLNIEEAKDRLRVLMLRKHPRSLLI----LDDV 245
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.3 bits (68), Expect = 0.47
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFIS 302
++ GP G K+ K LA + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
Score = 29.5 bits (66), Expect = 1.1
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF-------SKFYGEAEFRLK 62
MKK +I G G GK++ LA+ + D+ + E++ L
Sbjct: 1 MKK--LYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDIINHMVVGGYRPPWESDELLA 56
Query: 63 AAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAV 120
+ D + LL N DV+ D+ L + ++ +++ ++L
Sbjct: 57 LTWKNITDLTVNFLLAQN-DVVLDYIAFPDEAEALAQTV---QAKVDDVEIRFIILWT 110
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.4 bits (68), Expect = 0.51
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
++ G G K+ +A +A + F+
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37
Score = 26.5 bits (58), Expect = 8.8
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
++ GV+G+GK+++ +A + +
Sbjct: 11 YVLMGVSGSGKSAVASEVAHQLHAAFL 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 30.6 bits (70), Expect = 0.56
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 265 ARLGIKPPR---GILMF-GPPGCSKTMIAKALA 293
AR G+K P G +F GP G KT +AK LA
Sbjct: 36 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 68
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 30.5 bits (68), Expect = 0.56
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
I + G ++ K LA E ++F I
Sbjct: 17 ITIEREYGSGGRIVGKKLAEELGIHFYDDDI 47
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.0 bits (68), Expect = 0.60
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL-DHAPS 74
+ I G++ +GKT+L + L+ ++ + + V M E R + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD-HIVERAKRYHTGNEEWFEYYYLQ 83
Query: 75 ----LLLLDNLDVLCTGR 88
L L
Sbjct: 84 WDVEWLTHQLFRQLKASH 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 30.1 bits (68), Expect = 0.61
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42
+L G+ +GKT L L + T
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ 36
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 30.1 bits (68), Expect = 0.64
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42
G I+I G +GKTSL+ L + TV
Sbjct: 42 GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.64
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 56 EAEFRLKAAFDAALDHAPSLLL 77
+A +L A D AP+L +
Sbjct: 26 QASLKLYAD-----DSAPALAI 42
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 30.6 bits (69), Expect = 0.65
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
++ QD L++ + P +L +GPPG KT AL E
Sbjct: 37 DEVTAQDHAVTVLKK-----------TLKSANLP--HMLFYGPPGTGKTSTILALTKE 81
Score = 28.3 bits (63), Expect = 3.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 16 ILIYGVNGTGKTSLIHSLA------SHMKVHTVVIQVAD 48
+L YG GTGKTS I +L MK + + +D
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.0 bits (67), Expect = 0.69
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD--MFSKFY 54
I I+G G GK+++ ++ + V + F ++Y
Sbjct: 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYY 43
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 29.8 bits (67), Expect = 0.79
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKF 53
G K N ++ G TGK+ S ++ VI + S F
Sbjct: 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ--GAVISFVNSTSHF 96
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 29.7 bits (66), Expect = 0.83
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 271 PPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
R I++ G K+ I + L + +++ +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
Score = 26.6 bits (58), Expect = 8.1
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
I++ G + GK+ ++ L S + + V +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 29.3 bits (66), Expect = 0.89
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 17 LIYGVNGTGKTSLI 30
LI G NG+GK+SL+
Sbjct: 27 LIIGQNGSGKSSLL 40
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.7 bits (67), Expect = 0.92
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42
I+I G +GKTSL+ L + TV
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV 41
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 29.8 bits (67), Expect = 0.97
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
I++ G PG K+ +K LA N I V +
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIV 37
Score = 29.1 bits (65), Expect = 1.5
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 11/119 (9%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVH---TVVIQVADMFSKFYGEAEFRLKAAFD 66
M I++ G+ G GK++ +LA + + +V+ + F E +
Sbjct: 1 MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKK 60
Query: 67 AALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLD 125
+ L N V+ N + RR L + + ++ + SLD
Sbjct: 61 STYRLI--DSALKNYWVIVDDTNYYNSMRRDLINIA------KKYNKNYAIIYLKASLD 111
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.1 bits (66), Expect = 1.0
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFI 301
I M G GC T + + LA F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 29.0 bits (66), Expect = 1.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
I + G K+ + L+ + F
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRSLNIPFY 29
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 1.3
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
+++ G +G GK++LI+SL
Sbjct: 21 LMVVGESGLGKSTLINSL 38
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 29.3 bits (66), Expect = 1.3
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH---TVVIQVADMFS-------KFYGE-AEFRLKAA 64
I+++G G GKT+ + LA+ + + D + K Y E + L+
Sbjct: 108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC 167
Query: 65 FDAALDHAPSLLLLDNLDVLC---TGRNRSDQE 94
+ + + L D + GRN D +
Sbjct: 168 YTKE-EFQQAKELFSEYDHVFVDTAGRNFKDPQ 199
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann,
hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 1.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45
+ + G G GKT+LIH + +K V +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 29.8 bits (68), Expect = 1.4
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 265 ARLGIKPPR---GILMF-GPPGCSKTMIAKALA 293
AR G+K P G +F GP G KT +AK LA
Sbjct: 577 ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 1.4
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69
MK ++ G+ G GK++++ + + + ++ + A A +
Sbjct: 1 MKI---GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEM 57
Query: 70 DHAP 73
Sbjct: 58 RKLS 61
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 28.7 bits (65), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
I + G G KT + KA A + + FI
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFI 54
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.0 bits (66), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNF 300
IL+ G PG +KT+ LA L+F
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDF 74
Score = 29.0 bits (66), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 13 CNG-ILIYGVNGTGKTSLIHSLASHMKVHTVVIQ 45
G IL+ GV G KT +++LA M + IQ
Sbjct: 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 28.7 bits (65), Expect = 1.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
ILI G++G GKT++++ L V T+
Sbjct: 10 ILILGLDGAGKTTILYRLQVGEVVTTI 36
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 28.7 bits (64), Expect = 1.7
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEF--RLKAAFDA--ALDH 71
I I GV +GKT+L +L H+ +V+ Q D F K E E +D AL+
Sbjct: 24 IGISGVTNSGKTTLAKNLQKHLPNCSVISQ--DDFFKPESEIETDKNGFLQYDVLEALNM 81
Query: 72 APSLLLLDNLDVLCTGR---NRSDQERRLLSCLVTQVDRLHEL 111
++ + S + + ++
Sbjct: 82 ---EKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLF 121
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.4 bits (64), Expect = 2.0
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 17 LIYGVNGTGKTSLI 30
LI G NG+GK+SL+
Sbjct: 27 LIIGQNGSGKSSLL 40
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.0 bits (64), Expect = 2.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
+++ G +G GK++LI+SL
Sbjct: 11 LMVVGESGLGKSTLINSL 28
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 28.5 bits (63), Expect = 2.2
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
I + G ++AK LA + S ++
Sbjct: 9 IAIGREFGSGGHLVAKKLAEHYNIPLYSKEL 39
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 28.4 bits (64), Expect = 2.2
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDA----ALDH 71
I I G +GKT+L +LA + ++ + D + K G + + A D
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPM-DHYYKDLGHLPLEERLRVNYDHPDAFDL 67
Query: 72 APSLLLLDNLDVLCTGR 88
A L L++ L G
Sbjct: 68 A---LYLEHAQALLRGL 81
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 28.4 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTV 42
G K ILI G++G GKT++++ L V T
Sbjct: 14 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47
+ G NG GK++L+ L + I+V
Sbjct: 36 VLGQNGCGKSTLLDLLLGIHRPIQGKIEVY 65
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.5 bits (63), Expect = 2.4
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46
+++ GV G G T+ +++ V ++
Sbjct: 6 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 36
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.0 bits (63), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
+L+ G++ GKTS+++ L V TV
Sbjct: 25 VLMLGLDNAGKTSILYRLHLGDVVTTV 51
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 26.7 bits (60), Expect = 2.8
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 141 IELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATL 189
P+ + R IL K+ + + ++++A + G G ++ +
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGAEVKGV 53
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTV----VIQ------VADMFSKFYGEAEF 59
M +L+ G+ G+GK+++ LA + V + I+ +AD+F+ GE EF
Sbjct: 1 MAP-KAVLV-GLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFAT-DGEQEF 57
Query: 60 R 60
R
Sbjct: 58 R 58
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFI 301
++ G PG K+ I + LA + +
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.6 bits (62), Expect = 3.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
++I G++ GKT++++ + + VHT
Sbjct: 24 VIIVGLDNAGKTTILYQFSMNEVVHTS 50
>2qnt_A AGR_C_3434P, uncharacterized protein ATU1872; glyoxalase/bleomycin
resistance protein/dioxygenase family R protein, PSI-2,
MCSG; HET: MSE EPE; 1.40A {Agrobacterium tumefaciens
str}
Length = 141
Score = 27.5 bits (61), Expect = 3.6
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 37 MKVHTVVIQVADMF--SKFYGEAEFRLKAAFD----AALDHAPSLLLLDNLDVLCTGRNR 90
M+ + V D+ FY + LK D + ++ +L+ +
Sbjct: 7 MRFVNPIPFVRDINRSKSFYRDR-LGLKILEDFGSFVLFETGFAIHEGRSLEETIWRTSS 65
Query: 91 SDQERR-----LLSCLVTQVDRLHE 110
QE LL VD +
Sbjct: 66 DAQEAYGRRNMLLYFEHADVDAAFQ 90
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 27.7 bits (61), Expect = 3.7
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGE 56
I+I G G GKT+L+ + + + ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 27.6 bits (62), Expect = 3.7
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
++I G++ GKT++++ + + VHT
Sbjct: 19 VIIVGLDNAGKTTILYQFSMNEVVHTS 45
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 27.5 bits (60), Expect = 3.8
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA-----DMFSKFYGEAEFRLKAAFDA 67
+ +GTGKT+L+ L + + + DM G+ + L+ A A
Sbjct: 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAA 65
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 27.9 bits (63), Expect = 3.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+YG +GKT+L
Sbjct: 23 TQVYGPYASGKTTLALQTG 41
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 27.5 bits (62), Expect = 4.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
IL+ G++ GKT++++ L V T+
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTI 29
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 27.7 bits (61), Expect = 4.3
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
G+LI G +G GK+ L +AD Y + E + A L H
Sbjct: 36 GVLITGDSGVGKSETALELVQRGHRL-----IADDRVDVYQQDEQTIVGAAPPILSHLLE 90
Query: 75 LLLLDNLDVLCTGRNRSDQERRLLSCLV--------TQVDRLHELQACVVLLAV 120
+ L +DV+ + +E +S +V DRL + ++ V
Sbjct: 91 IRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDV 144
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 27.7 bits (62), Expect = 4.3
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGP-PGCSKTMIAKALATES 296
+ K + G P I++ P PG KT +AKAL +
Sbjct: 26 DECILPAFDKETFKS-----------ITSKGKIP--HIILHSPSPGTGKTTVAKALCHDV 72
Query: 297 KLNFI 301
+ +
Sbjct: 73 NADMM 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural
genomics, PSI-2, protei structure initiative; NMR
{Neisseria meningitidis serogroup B}
Length = 149
Score = 27.2 bits (61), Expect = 4.7
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
I ++G G GK+ L+ + + D A L A A
Sbjct: 39 IYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA-------ASMPLTDAAFEA-----EY 86
Query: 76 LLLDNLDVL 84
L +D ++ L
Sbjct: 87 LAVDQVEKL 95
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.2 bits (61), Expect = 4.7
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
+L+ G++ GKT+++
Sbjct: 21 LLMLGLDNAGKTTILKKFNGEDVDTIS 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+,
helix-turn-helix, nucleotide-binding, DNA binding, REP
initiation, DNA binding protein; HET: ADP; 2.70A
{Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB:
3r8f_A* 2hcb_A*
Length = 324
Score = 27.9 bits (63), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMK 38
N I IYG GTGKT L+ + + K
Sbjct: 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.8 bits (61), Expect = 4.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 11 KKCNGILIYGVNGTGKTSLI 30
+L+ GV G GKT I
Sbjct: 159 SSAKVVLVDGVPGCGKTKEI 178
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.3 bits (63), Expect = 4.8
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43
+ GI++ G G+GKT ++++ + ++ VV
Sbjct: 1264 LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVV 1297
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.9 bits (62), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 14 NGI-LIYGVNGTGKTSLI 30
GI I G NG+GK+S+
Sbjct: 25 KGIVAIIGENGSGKSSIF 42
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 27.4 bits (61), Expect = 5.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHT 41
I+ YG +GKT+ + + S +
Sbjct: 17 IVYYGPGLSGKTTNLKWIYSKVPEGR 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 27.7 bits (62), Expect = 5.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+ I G NGTGKT+ + LA
Sbjct: 120 VGIVGPNGTGKTTAVKILA 138
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.3 bits (61), Expect = 5.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
IL+ G++ GKT++++ L V T+
Sbjct: 32 ILMVGLDAAGKTTILYKLKLGEIVTTI 58
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.3 bits (60), Expect = 6.3
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYG 55
+LI G G+GKT+ ++ + ++ + + + G
Sbjct: 23 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNG 62
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 26.9 bits (60), Expect = 6.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
++ G++ GKT+L+H L V
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRLGQHV 54
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 26.8 bits (59), Expect = 6.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
I I G G GKT H+L + V
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics,
structural genomics consortium, SGC, unknown function;
1.70A {Plasmodium falciparum}
Length = 187
Score = 26.9 bits (60), Expect = 6.9
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV-------VIQVADMFS-----KFYGEAEF 59
K N IL+ G G GKT+++ LA + V + D+ S K+ G+ E
Sbjct: 43 KNNPILL-GDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEE 101
Query: 60 RLKA 63
RLK+
Sbjct: 102 RLKS 105
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 27.2 bits (61), Expect = 7.0
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 17 LIYGVNGTGKTSLIHS--LASHMKVHTV----VIQVADMFSKFYGEAEFRLKAAFD 66
IYG NG GKT+L+ + LA + +IQ GE E ++A
Sbjct: 30 GIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQ--------AGETEAYVRADLQ 77
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain
III (ATPase domain), ATP-binding, cytoplasm, DNA
replication; HET: ADP; 3.00A {Thermotoga maritima} PDB:
2z4r_A*
Length = 440
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKVH 40
N + IYG G GKT L+ S+ +++ +
Sbjct: 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 26.9 bits (60), Expect = 7.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTV-------VIQVADMFS-----KFYGEAEF 59
K N +LI G G GKT+++ LA + V + DM + K+ GE E
Sbjct: 43 KNNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEE 101
Query: 60 RLKA 63
RLK
Sbjct: 102 RLKG 105
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.8 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
IL+ G++ GKT+L+ LAS H
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHIT 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 26.8 bits (60), Expect = 7.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMK 38
I ++G +G+T LIH+ +
Sbjct: 53 QAIYLWGPVKSGRTHLIHAACARAN 77
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.2 bits (61), Expect = 7.6
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 191 SNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPN 234
+NA A V + +S + + A H++ + R + N
Sbjct: 276 TNAMIASYV---ALQEGVSEEQIRLAFQHLELTRNRTEWKKAAN 316
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 27.0 bits (60), Expect = 8.1
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 279 GPPGCSKTMIAKALATESKLNFI 301
G G KT + K +A F
Sbjct: 55 GMMGSGKTTVGKIMARSLGYTFF 77
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 26.4 bits (59), Expect = 8.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
+L G++ GKT+L+H L +
Sbjct: 26 LLFLGLDNAGKTTLLHMLKNDRLATLQ 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.393
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,499,961
Number of extensions: 270010
Number of successful extensions: 1454
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 239
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)