RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5649
(305 letters)
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 146 bits (370), Expect = 3e-43
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 9/208 (4%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
G + G+L+ G G GKT L ++A +V + +D F G R++
Sbjct: 34 FHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDL 93
Query: 65 FDAALDHAPSLLLLDNLDVLCTGRNR-----SDQERRLLSCLVTQVDRLHELQACVVLLA 119
F+ A HAP ++ +D +D + R +D+ + L+ L+ ++D + A +V++A
Sbjct: 94 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA-IVVMA 152
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITH 179
T D +D +L PGR D++I + P R IL P + D + +A T
Sbjct: 153 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD-LALLAKRTP 211
Query: 180 GFVGGDLATLLSNATSALLVETEGTGQV 207
GFVG DL LL+ A ALL EG ++
Sbjct: 212 GFVGADLENLLNEA--ALLAAREGRRKI 237
Score = 106 bits (265), Expect = 7e-28
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
E P V + D+ G +E K +L++ VE+ LK+P F +G + P+G+L+ GPPG KT +A+
Sbjct: 2 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 60
Query: 291 ALATESKLNFISVK 304
A+A E+++ FI+
Sbjct: 61 AVAGEARVPFITAS 74
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 143 bits (363), Expect = 4e-42
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
Q G K G+L+ G GTGKT L ++A KV I +D F G R++
Sbjct: 37 FQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDM 96
Query: 65 FDAALDHAPSLLLLDNLDVLCTGRNRS-----DQERRLLSCLVTQVDRLHELQACVVLLA 119
F+ A AP ++ +D +D + R D+ + L+ ++ ++D + ++++A
Sbjct: 97 FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG-IIVIA 155
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITH 179
T D +D +L PGR D+++ + +P R IL + +VP + D +A T
Sbjct: 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID-AAIIARGTP 214
Query: 180 GFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220
GF G DLA L++ A AL V + +A D +
Sbjct: 215 GFSGADLANLVNEA--ALFAARGNKRVVSMVE-FEKAKDKI 252
Score = 101 bits (252), Expect = 7e-26
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 231 EVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAK 290
+ ++D+ G DE K ++ + VE+ L+ P F +LG K P+G+LM GPPG KT++AK
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAK 63
Query: 291 ALATESKLNFISVK 304
A+A E+K+ F ++
Sbjct: 64 AIAGEAKVPFFTIS 77
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 106 bits (264), Expect = 1e-27
Identities = 37/73 (50%), Positives = 57/73 (78%)
Query: 232 VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKA 291
VP V W DIGG ++VK +L++ V++P++HP+ F + G+ P +G+L +GPPGC KT++AKA
Sbjct: 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 60
Query: 292 LATESKLNFISVK 304
+A E + NFIS+K
Sbjct: 61 IANECQANFISIK 73
Score = 105 bits (263), Expect = 2e-27
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 7/195 (3%)
Query: 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKA 63
GM G+L YG G GKT L ++A+ + + + I+ ++ + ++GE+E ++
Sbjct: 32 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRE 91
Query: 64 AFDAALDHAPSLLLLDNLDVLCTGRNRSDQE-----RRLLSCLVTQVDRLHELQACVVLL 118
FD A AP +L D LD + R + + R+++ ++T++D + + V ++
Sbjct: 92 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFII 150
Query: 119 AVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFIT 178
T D +D ++ PGRLDQ I +P+P R AIL L K P + ++ +A +T
Sbjct: 151 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMT 209
Query: 179 HGFVGGDLATLLSNA 193
+GF G DL + A
Sbjct: 210 NGFSGADLTEICQRA 224
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 105 bits (261), Expect = 3e-27
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V + D+GG + ++++ VE PL+HP F +G+KPPRGIL++GPPG KT+IA+A+A
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 295 ESKLNFISV 303
E+ F +
Sbjct: 61 ETGAFFFLI 69
Score = 88.2 bits (217), Expect = 4e-21
Identities = 64/191 (33%), Positives = 106/191 (55%), Gaps = 4/191 (2%)
Query: 5 LQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAA 64
++ G+K GIL+YG GTGKT + ++A+ +I ++ SK GE+E L+ A
Sbjct: 30 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKA 89
Query: 65 FDAALDHAPSLLLLDNLDVLCTGRNRSDQE--RRLLSCLVTQVDRLHELQACVVLLAVTT 122
F+ A +AP+++ +D LD + R ++ E RR++S L+T +D + +A V+++A T
Sbjct: 90 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG-LKQRAHVIVMAATN 148
Query: 123 SLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFV 182
+++D +LR GR D+E+++ +P R IL + + D Q THG V
Sbjct: 149 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE-THGHV 207
Query: 183 GGDLATLLSNA 193
G DLA L S A
Sbjct: 208 GADLAALCSEA 218
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 85.5 bits (211), Expect = 1e-19
Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQV--ADMFSKFYGEAEFRLKAAFDAAL 69
+++ G +GKT L+H+L + V + S + + + A L
Sbjct: 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181
Query: 70 DHAPSLLLLDNLDVLCTGRNRSDQ---ERRLLSCLVTQVDRLHELQACVVLLAVTTSL-- 124
H ++++D+L + + R L++ + + + CVV+ ++ +
Sbjct: 182 QHR--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSND 239
Query: 125 DNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHS 165
D + ++ R + + D +L +
Sbjct: 240 DKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRL 280
Score = 69.7 bits (170), Expect = 3e-14
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 12/145 (8%)
Query: 170 QIQQVAFITHGFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVK---PSAMR 226
Q AF H G S ++ T + + + + +
Sbjct: 15 AAQYAAF--HTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKNAQRIVAYKEK 72
Query: 227 QVLVEVPNVKWSD--IGGQDEVK--LKLRQSVEWPLKHPEAFARLGIKPPRGILMF-GPP 281
V E +V G + + + E P G + G+++ G
Sbjct: 73 SVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKG 132
Query: 282 GCSKTMIAKALATE--SKLNFISVK 304
KT + AL K + +V+
Sbjct: 133 NSGKTPLVHALGEALGGKDKYATVR 157
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 83.1 bits (204), Expect = 4e-19
Identities = 28/258 (10%), Positives = 72/258 (27%), Gaps = 33/258 (12%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD---MFSKFYGEAEFRLKAAFDAALDH 71
L+ G G+GKTSL ++ + + +VI F + K +
Sbjct: 34 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPY 93
Query: 72 APSLLLLDNLDVLCTGRN-------RSDQERRLLSCLVTQVDRLHELQAC-----VVLLA 119
+ + + G N R+ + ++ ++ L
Sbjct: 94 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLG 153
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITH 179
+ + R + + ++ + T + +
Sbjct: 154 TIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIR----LYNREGVK 209
Query: 180 GFVGGDLATLLSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVEVPNVKWSD 239
+ + ++ T + + +S + L+ ++ + E P K
Sbjct: 210 LYSSLETPSISPKETLEKELNRK-----VSGKEIQPTLERIEQKMVLNKHQETPEFK--- 261
Query: 240 IGGQDEVKLKLRQSVEWP 257
++ KL +S++ P
Sbjct: 262 -----AIQQKL-ESLQPP 273
Score = 58.4 bits (140), Expect = 2e-10
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
V ++D ++ + L + ++ + ++ P L+ G PG KT + A+
Sbjct: 4 VNFTDKQFENRLNDNLEELIQ---------GKKAVESPTAFLLGGQPGSGKTSLRSAIFE 54
Query: 295 ESKLNFISV 303
E++ N I +
Sbjct: 55 ETQGNVIVI 63
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 74.3 bits (182), Expect = 9e-16
Identities = 30/200 (15%), Positives = 56/200 (28%), Gaps = 24/200 (12%)
Query: 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY-GEAEFRLK 62
+ K L G +GKT+L +L + + + F G A +
Sbjct: 145 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFL 204
Query: 63 AAFDAA------LDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLH--ELQAC 114
F+ PS ++NLD L + S + +++ H +
Sbjct: 205 VVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKV---------NLEKKHLNKRTQI 255
Query: 115 VVLLAVTTSLDNVDVSLRTPGRLDQEIEL-PVPSRDQRAAILHCLLTKVPHSLSTDQIQQ 173
VT + V R ++I+ P LL K +
Sbjct: 256 FPPGIVTM--NEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALL-- 311
Query: 174 VAFITHGFVGGDLATLLSNA 193
+ + A + +
Sbjct: 312 -LMLIWYRPVAEFAQSIQSR 330
Score = 54.3 bits (130), Expect = 5e-09
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 14/98 (14%)
Query: 210 YDGVMRALDHVKPSAMRQVLVE-VPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARL- 267
++ ++ +D + S + E + V W + + +
Sbjct: 100 FNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVY-----------DFLKCMV 148
Query: 268 -GIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
I R L GP KT +A AL ++V
Sbjct: 149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 186
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 72.7 bits (177), Expect = 1e-15
Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 10/193 (5%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAE-FRLKAAFDAALDHAP 73
+L+ G +GKT+L +A + I D F A+ +K FD A
Sbjct: 42 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQL 101
Query: 74 SLLLLDNLDVLCTGRNRSDQER-RLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLR 132
S +++D+++ L + +L L+ + + ++++ T+ D +
Sbjct: 102 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEM 161
Query: 133 TPGRLDQEIELP-VPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGF-VGGDLATLL 190
I +P + + +Q L ++ + + +A G V + LL
Sbjct: 162 -LNAFSTTIHVPNIATGEQLLEAL-----ELLGNFKDKERTTIAQQVKGKKVWIGIKKLL 215
Query: 191 SNATSALLVETEG 203
+L ++ E
Sbjct: 216 MLIEMSLQMDPEY 228
Score = 47.6 bits (112), Expect = 6e-07
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 235 VKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKA 291
+KW D + + ++ + P +L+ GPP KT +A
Sbjct: 12 IKWGD---------PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAK 59
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 58.8 bits (141), Expect = 8e-11
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
+ GQ+ +K KLR +E +P +L+FGPPG KT +A +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHE 58
Query: 296 SKLNFISV 303
+N
Sbjct: 59 LGVNLRVT 66
Score = 44.9 bits (105), Expect = 4e-06
Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
+L++G G GKT+L H +A + V+ V + A
Sbjct: 37 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILA-------NSLEEGD 89
Query: 75 LLLLDNLDVLCTGRN---RSDQERRLLSCLVTQVDRLHELQAC---VVLLAVTTSLDNVD 128
+L +D + L E ++ ++ Q ++ L+ TT +
Sbjct: 90 ILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 149
Query: 129 VSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLAT 188
L + + + +E P + + L V + + ++ + G
Sbjct: 150 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGT-MRVAKR 206
Query: 189 LLSNATSALLVETEGTGQVLSYDGVMRALD 218
L V E V++ + + AL
Sbjct: 207 LFRRVRDFAQVAGEE---VITRERALEALA 233
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 55.9 bits (133), Expect = 8e-10
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 236 KWSDIGGQDEVKLKLRQSVE-WPLKHPEAF---ARLGIKPPRGILMFGPPGCSKTMIAKA 291
+ G +KL+ + W +F + G R +++GPPG KT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 292 LATE 295
+A E
Sbjct: 72 VAQE 75
Score = 33.6 bits (75), Expect = 0.023
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
G ++YG G GKT+ H +A + + +D+ SK A +
Sbjct: 48 GSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVK 99
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 53.7 bits (128), Expect = 7e-09
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARL-GIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
GQ + K + ++ + + L P+ ILM GP G KT IA+ LA + F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 301 IS 302
I
Sbjct: 78 IK 79
Score = 43.7 bits (102), Expect = 1e-05
Identities = 46/265 (17%), Positives = 78/265 (29%), Gaps = 39/265 (14%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSK-------FYGEAEFRLKAAFDA 67
IL+ G G GKT + LA + ++ + A
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI 110
Query: 68 ALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVV----------- 116
++ +D +D +C S + +S Q D L ++ V
Sbjct: 111 DAVEQNGIVFIDEIDKICKKGEYSGAD---VSREGVQRDLLPLVEGSTVSTKHGMVKTDH 167
Query: 117 LLAVTTSLDNVDVSLRTP----GRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQ 172
+L + + V GRL +EL S I LT+ SL+
Sbjct: 168 ILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERI----LTEPHASLTEQYKA 223
Query: 173 QVAFITHGFVGGDLATL-LSNATSALLVETEGTGQVLSYDGVMRALDHVKPSAMRQVLVE 231
+A A ++ A + +TE G R L V M ++
Sbjct: 224 LMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG--------ARRLHTVMERLMDKISFS 275
Query: 232 VPNVKWSDIG-GQDEVKLKLRQSVE 255
++ + V L + VE
Sbjct: 276 ASDMNGQTVNIDAAYVADALGEVVE 300
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 47.7 bits (112), Expect = 4e-07
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
+ GQ+ VK KL ++E E +L+ GPPG KT +A +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGE--------VLDHVLLAGPPGLGKTTLAHIIASE 58
Query: 296 SKLNFI 301
+ N
Sbjct: 59 LQTNIH 64
Score = 35.7 bits (81), Expect = 0.004
Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 30/214 (14%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
+L+ G G GKT+L H +AS ++ + V S + + A +
Sbjct: 38 VLLAGPPGLGKTTLAHIIASELQTNIHVT------SGPVLVKQGDMAAILTSLERG---- 87
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCL-VTQVDRLHELQAC----------VVLLAVTTSL 124
D L + R E L S + Q+D + L+ TT
Sbjct: 88 ---DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRS 144
Query: 125 DNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGG 184
+ LR+ R +EL + + I+ + + + + +A + G
Sbjct: 145 GLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPR 201
Query: 185 DLATLLSNATSALLVETEGTGQVLSYDGVMRALD 218
L L V ++ D V++ ++
Sbjct: 202 IAIRLTKRVRDMLTVVKADR---INTDIVLKTME 232
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 47.9 bits (112), Expect = 5e-07
Identities = 38/240 (15%), Positives = 62/240 (25%), Gaps = 29/240 (12%)
Query: 7 SNGMKKCNGILIYGVNGTGKTSLIHSLASHMK----VHTVVIQVADMFSKFYGEAEFRLK 62
N + G GTGKT + L K V I + E
Sbjct: 37 RNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARS 96
Query: 63 AAFDAALDHAPSLLLLDNLDVLCTGRNRS-----DQERRLLSCLVTQVDRLHELQAC--- 114
L L R+ D L +++ RL +
Sbjct: 97 LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGA 156
Query: 115 --VVLLAVTTSLDNVDVSLRTPG--RLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD- 169
+ L+ V + ++ + I ++DQ IL S
Sbjct: 157 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE 216
Query: 170 -QIQQVAFITHGFVGGDLA--------TLLSNATSALLVETEGTGQVLSYDGVMRALDHV 220
+Q +A IT D +L + A + G + D V ++ V
Sbjct: 217 DILQMIADITGAQTPLDTNRGDARLAIDILYRS--AYAAQQNGRKHIAPED-VRKSSKEV 273
Score = 36.3 bits (82), Expect = 0.003
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFI 301
+++ +L + L++P + G PG KT+ + L K
Sbjct: 20 HREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 302 SVKI 305
+ +
Sbjct: 73 ARFV 76
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 44.5 bits (104), Expect = 7e-06
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 238 SDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
S I GQ+++KL L + P G+L+FG G K+ +ALA
Sbjct: 7 SAIVGQEDMKLALLLTAVDPGIG-------------GVLVFGDRGTGKSTAVRALAA 50
Score = 30.7 bits (68), Expect = 0.20
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVV 43
G+L++G GTGK++ + +LA+ + V
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALLPEIEAV 58
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 43.6 bits (102), Expect = 2e-05
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 242 GQDEVKLKL---------RQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKAL 292
GQ + K + R ++ PL+H P+ ILM GP G KT IA+ L
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVT--------PKNILMIGPTGVGKTEIARRL 69
Query: 293 ATESKLNFISVK 304
A + FI V+
Sbjct: 70 AKLANAPFIKVE 81
Score = 26.3 bits (57), Expect = 6.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 14 NGILIYGVNGTGKTSLIHSLASHMKV 39
IL+ G G GKT + LA
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANA 75
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 39.1 bits (90), Expect = 2e-04
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
P + +++ G P K + + T+ +L IS
Sbjct: 2 DPLK-VMISGAPASGKGTQCELIKTKYQLAHISA 34
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 38.4 bits (88), Expect = 4e-04
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 269 IKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
+K + I + G PG K + + + +S
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 39
Score = 25.7 bits (55), Expect = 5.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVH 40
+KK I + G G+GK + +
Sbjct: 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYT 35
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 38.0 bits (87), Expect = 6e-04
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
KP + + G PG K + + +S
Sbjct: 5 KPNV-VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 37.2 bits (85), Expect = 7e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
IL+ G PG KT + K LA++S L +I+V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
Score = 27.6 bits (60), Expect = 1.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
IL+ G G GKT+L LAS + +
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYI 33
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 37.6 bits (86), Expect = 8e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 272 PRG--ILMFGPPGCSKTMIAKALATESKLNFISV 303
P+G ++ GPPG K A LA + ++
Sbjct: 1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 36.8 bits (84), Expect = 0.001
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+++ GPPG K A L ++
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 37.5 bits (86), Expect = 0.001
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 249 KLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
KL++ IL+ GP G KT++A+ LA +
Sbjct: 45 KLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 99
Score = 27.1 bits (59), Expect = 3.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 6/87 (6%)
Query: 15 GILIYGVNGTGKTSLIHSLASHM-----KVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69
IL+ G G+GKT + +LA H+ + A + RL A D +
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 129
Query: 70 DHAP-SLLLLDNLDVLCTGRNRSDQER 95
A ++ +D +D + R
Sbjct: 130 QKAQKGIVFIDEIDKISRLSENRSITR 156
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 36.1 bits (82), Expect = 0.002
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
I++ G P K A+ + + + IS
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 36.4 bits (83), Expect = 0.002
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+ G PG K ++ + +L +S
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 35.7 bits (81), Expect = 0.003
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+++ G PG K A+ + + IS
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHIST 31
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 35.6 bits (81), Expect = 0.003
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 258 LKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
L PE+ + L P ++ G PG K+ + + ++
Sbjct: 1 LYLPES-SSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT 47
Score = 25.6 bits (55), Expect = 6.3
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 16 ILIYGVNGTGKTSLIHSLASHM 37
++ G G GK++ I
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSA 38
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 35.7 bits (81), Expect = 0.003
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+L+ GPPG K A LA + + IS
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
Score = 25.2 bits (54), Expect = 9.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
+L+ G G GK + LA + + I ++F
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGI--PQISTGELF 35
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 35.9 bits (81), Expect = 0.004
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 12/58 (20%)
Query: 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALA 293
+ + +E+ L+ + P P +L++GP G K AL
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLP------------HLLLYGPNGTGKKTRCMALL 54
Score = 30.1 bits (66), Expect = 0.31
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHM 37
+ +L+YG NGTGK + +L +
Sbjct: 31 RDLPHLLLYGPNGTGKKTRCMALLESI 57
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 35.7 bits (81), Expect = 0.004
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
I + G PG K + L + +S
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 39
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 35.4 bits (80), Expect = 0.004
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 270 KPPRG--ILMFGPPGCSKTMIAKALATESKLNFI 301
+ P+G IL+ G PG KT +A+ +A E
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQH 34
Score = 27.3 bits (59), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVV 43
G+ ILI G GTGKTS+ +A+ + +
Sbjct: 5 GIN----ILITGTPGTGKTSMAEMIAAELDGFQHL 35
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 35.3 bits (80), Expect = 0.004
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+L+ G PG K+ IA+ALA + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHF 35
Score = 31.5 bits (70), Expect = 0.086
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAA 68
+L+ G G+GK+++ +LA+ V V +D +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHGRIDPWLPQSHQ 58
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 34.9 bits (79), Expect = 0.005
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
I++ G PG K A + + IS
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHIST 31
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 35.0 bits (79), Expect = 0.005
Identities = 4/31 (12%), Positives = 10/31 (32%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFISV 303
+ + + G K+++ LA
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWE 38
Score = 34.7 bits (78), Expect = 0.008
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
+ I G +GK+ L++ LA+ +
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSA 36
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 35.3 bits (81), Expect = 0.006
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 18 IYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
+ G NG GKT+ + ++A ++ ++ D+ +K A P L
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHEL 111
+ +NL + R + +R L + + RL E
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER 132
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 34.9 bits (79), Expect = 0.006
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 271 PPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
P + + G PG K + + +S
Sbjct: 1 PLV-VFVLGGPGAGKGTQCARIVEKYGYTHLSA 32
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 34.7 bits (78), Expect = 0.006
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
R I + GP G K+ I + LA + + F
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 35
Score = 27.4 bits (59), Expect = 1.5
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM 49
I + G G GK+++ LA + +
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 38
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 35.1 bits (79), Expect = 0.007
Identities = 26/240 (10%), Positives = 59/240 (24%), Gaps = 40/240 (16%)
Query: 15 GILIYGVNGTGKTSLIHSLASHMKVHTVVIQV-------------------------ADM 49
G G GKT+L + +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGY 107
Query: 50 FSKFYGEAEFRLKAAFDAALDHAPSL--LLLDNLDVLCTGRNRSDQ---ERRLLSCLVTQ 104
+ G + A L ++LD + + + + + +
Sbjct: 108 PIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 167
Query: 105 VDRLHELQACVVLLAVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPH 164
D ++ + +V V + + ++ ++ LP + IL
Sbjct: 168 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR 227
Query: 165 --SLSTDQIQQVAFITHGFVGG-----DLATLLSNATSALLVETEGTGQVLSYDGVMRAL 217
++ ++ + GG L A + E G + V +A+
Sbjct: 228 DTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA--CEMAEAMGRDSLSEDL-VRKAV 284
Score = 34.3 bits (77), Expect = 0.013
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 4/54 (7%)
Query: 242 GQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
+ L + L + + + G G KT +AK
Sbjct: 20 VRRGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKR 69
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.007
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSKFYGEAEFRLKA 63
+ + G G GKT+LIH + +K V + + F +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVT 53
Score = 32.3 bits (72), Expect = 0.048
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
R + + GPPG KT + + K + + V
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.8 bits (76), Expect = 0.012
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFI 301
I M G GC T + + LA F+
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
Score = 25.7 bits (55), Expect = 6.0
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKV 39
M + I + G G G T++ LA +
Sbjct: 1 MTEP--IFMVGARGCGMTTVGRELARALGY 28
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 33.4 bits (75), Expect = 0.014
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVK 304
P+ +L+ G PG K+ I + LA + +
Sbjct: 2 PKAVLV-GLPGSGKSTIGRRLAKALGVGLLDTD 33
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 33.9 bits (76), Expect = 0.017
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAE 58
L+ G+ TGK+S+I + + + + + + + Y +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYK 74
Score = 30.1 bits (66), Expect = 0.26
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 257 PLKHPEAF-------ARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISV 303
P + + F +L L+ G K+ I K E L +I +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYL 60
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.5 bits (75), Expect = 0.017
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
R I++ G K+ I + L + +++ +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36
Score = 28.1 bits (61), Expect = 1.1
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK---VHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72
I++ G + GK+ ++ L S + + V + + AE ++ D +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 73 P 73
P
Sbjct: 66 P 66
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 33.8 bits (76), Expect = 0.018
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 221 KPSAMRQVLVEV--PNVKWSDIGGQDEVKLKLRQSVE-WPLKHPEAFARLGIKPPRGILM 277
+ + + VE P + DI GQ+ + +L+ V+ + H +L
Sbjct: 6 EVKVLEKPWVEKYRPQ-RLDDIVGQEHIVKRLKHYVKTGSMPH--------------LLF 50
Query: 278 FGPPGCSKTMIAKALATE 295
GPPG KT A ALA E
Sbjct: 51 AGPPGVGKTTAALALARE 68
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 33.1 bits (74), Expect = 0.021
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 270 KPPRG--ILMFGPPGCSKTMIAKALATESKLNFI 301
+ +G I + G K IA+AL
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG 35
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 33.1 bits (74), Expect = 0.024
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFIS 302
I + GP G K + KA+A + + +
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLLD 33
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.6 bits (73), Expect = 0.029
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNFI 301
+ I+ G G K+ +A+ALA + L F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
Score = 25.3 bits (54), Expect = 8.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV 39
I+ G G+GK++L +LA + +
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDL 26
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 32.7 bits (73), Expect = 0.031
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFIS 302
++ GP G K+ K LA + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYI 32
Score = 30.4 bits (67), Expect = 0.17
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK 38
MKK +I G G GK++ LA+ +
Sbjct: 1 MKKL--YIITGPAGVGKSTTCKRLAAQLD 27
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 32.8 bits (73), Expect = 0.034
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 236 KWSDIGGQDEVKLKLRQSVE-WPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
++ QD L+++++ L H +L +GPPG KT AL
Sbjct: 10 NLDEVTAQDHAVTVLKKTLKSANLPH--------------MLFYGPPGTGKTSTILALTK 55
Query: 295 E 295
E
Sbjct: 56 E 56
Score = 27.0 bits (58), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHM 37
+L YG GTGKTS I +L +
Sbjct: 31 ANLPHMLFYGPPGTGKTSTILALTKEL 57
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 32.8 bits (74), Expect = 0.034
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK 38
+K N + G+ G+GKT+ LA + K
Sbjct: 7 LKDRNLWFLVGLQGSGKTTTAAKLALYYK 35
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.038
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 3/63 (4%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69
MKK IL G G+GK++ + I D E
Sbjct: 1 MKKI--ILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDYRQSIMAHEERDEYKYTKKKE 57
Query: 70 DHA 72
Sbjct: 58 GIV 60
Score = 31.6 bits (70), Expect = 0.060
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 275 ILMFGPPGCSKTMIAKALATE 295
IL G PG K+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 32.3 bits (72), Expect = 0.039
Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 14/142 (9%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH----------TVVIQVADMFSKFYGEAEFRLKAAF 65
+++ GV G G T+ +++ +V+ +VA + + R
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 66 DAALDHAPSLLLLDNLD----VLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVT 121
+ + + V + + L L + V +V+
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG 123
Query: 122 TSLDNVDVSLRTPGRLDQEIEL 143
+ +S T R
Sbjct: 124 DEILMRRMSDETRVRDLDTAST 145
Score = 31.1 bits (69), Expect = 0.096
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
+++ G PG T ++ + ++ K+
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.0 bits (71), Expect = 0.055
Identities = 28/183 (15%), Positives = 55/183 (30%), Gaps = 9/183 (4%)
Query: 14 NGILIYGVNGTGKTSLIHSLA-SHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA 72
+ +LI + G G +LI++L+ + + + A +
Sbjct: 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84
Query: 73 PSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSL- 131
+ L +D + + N + VT L + A +L + L
Sbjct: 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144
Query: 132 -----RTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDL 186
R L L + + L +V ++S D + ++ G G L
Sbjct: 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--TMSQDALLAALRLSAGSPGAAL 202
Query: 187 ATL 189
A
Sbjct: 203 ALF 205
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 31.9 bits (71), Expect = 0.057
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
++ G G K+ +A +A + F+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 39
Score = 25.8 bits (55), Expect = 4.9
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD 48
++ GV+G+GK+++ +A + +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 31.9 bits (71), Expect = 0.059
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRL 61
++I G++ GKT++++ + + VHT +++ F +
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLM 63
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.2 bits (73), Expect = 0.060
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 16 ILIYGVNGTGKTSL---IHSLASHMKVHTVVIQVADMFSKFYGEAEF-RLKAAFDAALDH 71
+LI G +G GK + IH L+ K V + VA + + F K AF A+
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 72 APSL--------LLLDNLDVLCTGRNRSDQERRLLSCL----VTQVDRLHELQACVVLLA 119
L LD + L + + +LL + ++ E++ V +LA
Sbjct: 86 KEGFFELADGGTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 140
Query: 120 VTT 122
T
Sbjct: 141 ATN 143
Score = 26.4 bits (58), Expect = 4.7
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 275 ILMFGPPGCSKTMIAKALATESK 297
+L+ G G K ++A+ + S
Sbjct: 26 VLITGESGVGKEVVARLIHKLSD 48
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 31.7 bits (71), Expect = 0.073
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38
K I++ GV GTGK + LA K
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK 37
Score = 26.3 bits (57), Expect = 4.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 270 KPPRGILMFGPPGCSKTMIAKALA 293
K P I++ G G K A LA
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGKLA 33
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.6 bits (71), Expect = 0.074
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEF 59
IL+ GVNG GKT+ I LA + + +A + E
Sbjct: 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ 55
Score = 25.8 bits (56), Expect = 6.2
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 267 LGIKPPRGILMFGPPGCSK-TMIAK 290
+ K P ILM G G K T I K
Sbjct: 4 VEGKAPFVILMVGVNGVGKTTTIGK 28
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.5 bits (70), Expect = 0.079
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 272 PRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
P I+M G P KT I+K L + +
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 35
Score = 31.1 bits (69), Expect = 0.11
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 21/179 (11%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK---VHTVVI-------------QVADMFSKFYGEAEF 59
I++ G+ GKT + L ++ V T + + F E
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLK 64
Query: 60 RLKAAFDAALDHAPSLLLLDNLD-VLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLL 118
K AAL+ L + + N + + R ++ Q + +
Sbjct: 65 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVD 124
Query: 119 AVTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFI 177
+ + V V L +P ++++ + +R + +Q + +++I
Sbjct: 125 PEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDE----EQDRDLSYI 179
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 31.6 bits (70), Expect = 0.080
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 2/170 (1%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
+D L G++ ++G G+GKT L H+LA +++ + E FR
Sbjct: 25 LDKLL-GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 83
Query: 61 LKAAFDAALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRL-HELQACVVLLA 119
+ + A + + + N + Q + + L + ++++
Sbjct: 84 PERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 143
Query: 120 VTTSLDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
TS + R Q+ + R A L+ + V + +
Sbjct: 144 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAR 193
Score = 26.6 bits (57), Expect = 3.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALATESKL 298
GI+ +FG G KT +A LA +L
Sbjct: 32 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 62
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 31.2 bits (70), Expect = 0.10
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
+L+ GVNG GKT+ I L + +
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQ 31
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 31.3 bits (69), Expect = 0.11
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
+D L G++ + ++G TGKT + H+LA ++ E FR
Sbjct: 12 LDKLL-QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFR 70
Query: 61 LKAAFDAALDH 71
+ A +
Sbjct: 71 PERLLAVAERY 81
Score = 28.2 bits (61), Expect = 1.2
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALA 293
GI+ MFG KT I LA
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLA 44
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 31.1 bits (69), Expect = 0.11
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
IL+ G++ GKT++++ L V T+ ++ + Y
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY 53
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 31.1 bits (69), Expect = 0.11
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 15/61 (24%)
Query: 236 KWSDIGGQDEVKLKLRQSVE-WPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
SDI G E +L+Q + + H +++ G PG KT LA
Sbjct: 13 VLSDIVGNKETIDRLQQIAKDGNMPH--------------MIISGMPGIGKTTSVHCLAH 58
Query: 295 E 295
E
Sbjct: 59 E 59
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 31.1 bits (69), Expect = 0.12
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 279 GPPGCSKTMIAKALATESKLNFIS 302
GP K+ +AK +A + ++
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
Score = 27.3 bits (59), Expect = 2.4
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAAL 69
MK I I G +GK+++ +A + M Y A +
Sbjct: 1 MKTIQ-IAIDGPASSGKSTVAKIIAKDFGFT--YLDTGAM----YRAATYMALKNQLGVE 53
Query: 70 DHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLA 119
+ L LLD + DQ + +T R +E+ V +A
Sbjct: 54 EVEALLALLDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIA 103
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 30.8 bits (69), Expect = 0.13
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMK 38
+ ILI G + + + L +++
Sbjct: 13 SEGISILINGEDLSYPREVSLELPEYVE 40
Score = 26.2 bits (57), Expect = 4.0
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 275 ILMFGPPGCSKTMIAKALATE 295
IL+ G ++ L
Sbjct: 18 ILINGEDLSYPREVSLELPEY 38
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.8 bits (68), Expect = 0.13
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 265 ARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNF 300
R G + + + G G KT ++ AL +
Sbjct: 13 TRGGFRG-CTVWLTGLSGAGKTTVSMALEEYLVCHG 47
Score = 28.1 bits (61), Expect = 0.92
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHMK 38
G + C + + G++G GKT++ +L ++
Sbjct: 13 TRGGFRGCT-VWLTGLSGAGKTTVSMALEEYLV 44
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 31.0 bits (69), Expect = 0.13
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVI 44
ILI G++ TGKT+ + L ++ + ++
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKLQPNCKLL 34
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 31.1 bits (70), Expect = 0.14
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 14 NGILIYGVNGTGKTSLIHSLA----------SHMKVHTVVIQVADMFS--KFYGEAEFRL 61
N L+ G +G GKT++ LA + + + + K+ G+ E R
Sbjct: 40 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRF 99
Query: 62 KAAFDAALDHAPSLLLLDNLDVLC 85
KA S+L +D + +
Sbjct: 100 KALLKQLEQDTNSILFIDEIHTII 123
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.9 bits (68), Expect = 0.14
Identities = 10/59 (16%), Positives = 24/59 (40%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
+ I G++ +GKT+L + L+ ++ + + V M A+ + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQ 83
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.8 bits (68), Expect = 0.14
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
++ G PG K+ + + I+ KI
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKI 34
Score = 30.8 bits (68), Expect = 0.15
Identities = 4/23 (17%), Positives = 13/23 (56%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
++ G+ G GK++++ + +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILD 26
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 30.9 bits (69), Expect = 0.14
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
I++ GVNGTGKT+ LA
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFV 36
Score = 27.0 bits (59), Expect = 2.9
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 270 KPPRGILMFGPPGCSK-TMIAK 290
+PP I++ G G K T K
Sbjct: 9 EPPFVIMVVGVNGTGKTTSCGK 30
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.17
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 17 LIYGVNGTGKTSLIHSL 33
LI G NG+GK+SL+ ++
Sbjct: 27 LIIGQNGSGKSSLLDAI 43
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 30.3 bits (67), Expect = 0.18
Identities = 23/113 (20%), Positives = 42/113 (37%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
IL+ G++ GKT+L+ LAS H Q ++ S + +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 78
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVD 128
+N D+L + +D++R + E +CV +L D +
Sbjct: 79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 30.3 bits (67), Expect = 0.18
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRL 61
ILI G++G GKT++++ L V T ++ + Y + +
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNV 65
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.20
Identities = 13/79 (16%), Positives = 23/79 (29%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
I+I G G GKT+L+ + + + ++ + + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 76 LLLDNLDVLCTGRNRSDQE 94
V G N E
Sbjct: 63 FFTSKKLVGSYGVNVQYFE 81
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 30.2 bits (67), Expect = 0.20
Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 14/160 (8%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVH-TVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPS 74
+ G +GKT+L+ + V V + + +
Sbjct: 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63
Query: 75 LLLLDNLDVLCTGRNRSDQERRLLSC--------LVTQVDRLHELQACVVLLAVTTS--- 123
+ D L L R + L LV + + +V +
Sbjct: 64 AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASLQ 123
Query: 124 -LDNVDVSLRTPGRLDQEIELPVPSRDQRAAILHCLLTKV 162
L N+ ++ L+ + PV S + L+ +V
Sbjct: 124 HLANI-RAVIAWEPLEGPLAHPVFSLADDDEYIPWLMNEV 162
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.0 bits (66), Expect = 0.21
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEF 59
IL+ G++ GKT++++ L V T+ ++ + Y F
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 46
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 30.5 bits (67), Expect = 0.22
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVH 40
+D L G++ + ++G TGK+ L H+LA ++
Sbjct: 23 LDTLL-GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIP 61
Score = 27.8 bits (60), Expect = 1.5
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALA 293
G++ +FG K+ + LA
Sbjct: 30 GVETGSITELFGEFRTGKSQLCHTLA 55
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.2 bits (68), Expect = 0.24
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 12 KCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
K N ++ G TGK+ S ++ VI + S F+
Sbjct: 52 KKNCLVFCGPANTGKSYFGMSFIHFIQ--GAVISFVNSTSHFW 92
Score = 27.9 bits (62), Expect = 1.4
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 18/76 (23%)
Query: 237 WSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPP--RGILMFGPPGCSKTMIAKALA- 293
W I V+ Q +E + A P ++ GP K+ +
Sbjct: 22 WRPI-----VQFLRYQQIE-FITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIH 75
Query: 294 ---------TESKLNF 300
S +F
Sbjct: 76 FIQGAVISFVNSTSHF 91
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 30.5 bits (67), Expect = 0.25
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
LI G NG+GK+SL+ ++
Sbjct: 26 NLIIGQNGSGKSSLLDAIL 44
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 30.1 bits (66), Expect = 0.26
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 236 KWSDIGGQDEVKLKLRQSVE-WPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALAT 294
++ GQ+EV +R+ V+ L H +L +GPPG KT ALA
Sbjct: 12 TLDEVYGQNEVITTVRKFVDEGKLPH--------------LLFYGPPGTGKTSTIVALAR 57
Query: 295 E 295
E
Sbjct: 58 E 58
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 29.7 bits (65), Expect = 0.26
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRL 61
M + ILI G++G GKT++++ L V T+ ++ + Y +F++
Sbjct: 2 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQV 53
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 30.0 bits (66), Expect = 0.27
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYG 55
+LI G G+GKT+ ++ + ++ + + + G
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNG 51
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 29.7 bits (66), Expect = 0.33
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 236 KWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKA 291
++D+ GQ+ V L + + L G G KT IA+
Sbjct: 10 TFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARL 53
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 29.7 bits (66), Expect = 0.38
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46
+L+ G +GK++++ + V T I
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVVLTSGIFE 39
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 29.6 bits (66), Expect = 0.38
Identities = 12/79 (15%), Positives = 29/79 (36%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLL 77
+ G NG GKT+ + +++ +K + ++ V +L + ++
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92
Query: 78 LDNLDVLCTGRNRSDQERR 96
++ L + S E
Sbjct: 93 IEYLRFVAGFYASSSSEIE 111
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.3 bits (64), Expect = 0.44
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
I I GV+G GK +L+ L+ +
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAFR 25
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 28.9 bits (64), Expect = 0.50
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 4 ALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKA 63
L +K + + G G GKT+L + + V + Y A +
Sbjct: 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIY- 82
Query: 64 AFDAALDHAPSLLLLDNLD 82
FD P L +
Sbjct: 83 HFDLYRLADPEELEFMGIR 101
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.8 bits (63), Expect = 0.51
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADM 49
+ +GTGKT+L+ L + + +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.2 bits (64), Expect = 0.62
Identities = 10/75 (13%), Positives = 22/75 (29%)
Query: 8 NGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDA 67
G + I++ +G GK++ + A M + E L +
Sbjct: 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 89
Query: 68 ALDHAPSLLLLDNLD 82
L + ++
Sbjct: 90 VRLRQSDSLKREIIE 104
>d1jqka_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Rhodospirillum rubrum [TaxId: 1085]}
Length = 610
Score = 29.4 bits (66), Expect = 0.62
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 225 MRQVLVEVPNVKWSDIGGQDEVKLKLRQSVEWPLKHPEAFARLGIKP 271
+ ++ ++ + D QD K + + + LG+ P
Sbjct: 114 LLAIVGDLAAITLGDFQNQDYDKPCAWLAASLTPRRVKRLGDLGLLP 160
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 29.3 bits (65), Expect = 0.65
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVI--------QVADMFSKFYGE 56
+ G GTGKT I ++ + + T+VI Q+ +F+
Sbjct: 34 QTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFPH 82
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 29.3 bits (65), Expect = 0.68
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLA----------SHMKVHTVVIQVADMFS--KFYGEAE 58
K N +LI G G GKT+++ LA V +Q+ + + K+ GE E
Sbjct: 42 TKNNPVLI-GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 100
Query: 59 FRLKAAFDAALDHAPSLLL-LDNLDVL 84
RLKA + ++L +D L +
Sbjct: 101 ERLKAVIQEVVQSQGEVILFIDELHTV 127
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 0.71
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+++ G GTGKT+ + + V +
Sbjct: 6 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV 44
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.5 bits (62), Expect = 0.71
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
KK ++ G++ GKT+L+H L V
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI 54
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 0.77
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLASHM 37
+ G GK+ L LA+ +
Sbjct: 32 GALVSPGGAGKSMLALQLAAQI 53
Score = 26.9 bits (58), Expect = 3.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALA 293
+ + P G K+M+A LA
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLA 50
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.4 bits (62), Expect = 0.79
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
I++ GV+ GK++ L +
Sbjct: 6 IVLEGVDRAGKSTQSRKLVEALC 28
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 28.5 bits (62), Expect = 0.81
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 17 LIYGVNGTGKTSLIHSL 33
+ G NG GK++ + +
Sbjct: 28 TLSGGNGAGKSTTMAAF 44
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.1 bits (61), Expect = 0.81
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGE 56
+L G++ GKT+L+H L + ++ T+ +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKND-RLATLQPTWHPTSEELAIG 42
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 0.82
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37
+D L G++ + GV G+GKT ++H ++
Sbjct: 23 LDSVL-GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58
Score = 27.4 bits (59), Expect = 2.1
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALATE 295
G++ G G KT I
Sbjct: 30 GLESQSVTEFAGVFGSGKTQIMHQSCVN 57
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.3 bits (62), Expect = 0.85
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
M++ +++ G G GK++L + + + D + K
Sbjct: 1 MREYK-VVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEI 44
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 28.4 bits (62), Expect = 0.88
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
I+I G+ G GKT+ + + ++
Sbjct: 5 IVIEGLEGAGKTTARNVVVETLE 27
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.4 bits (62), Expect = 0.89
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
++ G GKT L+ S A+ V V D ++
Sbjct: 12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 50
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 28.5 bits (62), Expect = 0.92
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
+ I G GK++ + L
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTYP 27
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.5 bits (62), Expect = 0.92
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
D L G++ +G TGKT L H+L ++ E FR
Sbjct: 26 FDKLL-GGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR 84
Query: 61 LKAAFDAALDHAPSL 75
D A
Sbjct: 85 PDRLRDIADRFNVDH 99
Score = 27.8 bits (60), Expect = 1.6
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALATE 295
GI+ FG KT ++ L
Sbjct: 33 GIESMAITEAFGEFRTGKTQLSHTLCVT 60
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 28.4 bits (63), Expect = 0.99
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37
+D AL + G+ + IYG +GKT+L + +
Sbjct: 42 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.4 bits (63), Expect = 1.0
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVH--TVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
I G NG+GK++LI+ + +K V + D+ +K E +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLRTPG 135
+L+NL + S + + + + E + L + R G
Sbjct: 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK-----AFKILEFLKLSHLYDRKAG 149
Query: 136 RLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQ 170
L + + I L+T P + D+
Sbjct: 150 ELS-------GGQMKLVEIGRALMTN-PKMIVMDE 176
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.0 bits (62), Expect = 1.1
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLL 77
G +G GK++L+ +A + + + + + AE + + P L +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV-GMVFQSYALYPHLSV 89
Query: 78 LDNLDVLCTGRNRSDQERR 96
+N+ +
Sbjct: 90 AENMSFGLKLAGAKKEVIN 108
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.9 bits (61), Expect = 1.2
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS 51
+L+ G +G GK+ L+ + + + + F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK 44
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 28.3 bits (62), Expect = 1.2
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVI--------QVADMFSKFYGE 56
+ + G GTGKT + + + +V+ Q+A F + + E
Sbjct: 31 VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPE 79
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 1.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
I I G GK++ ++ L +
Sbjct: 5 ISIEGNIAAGKSTFVNILKQLCE 27
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 28.1 bits (61), Expect = 1.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 17 LIYGVNGTGKTSLIHSLA 34
I G NG+GK+++I ++
Sbjct: 28 AIVGPNGSGKSNIIDAIK 45
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.9 bits (61), Expect = 1.3
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNF 300
+ +++ G G + I L T+ F
Sbjct: 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF 31
Score = 26.7 bits (58), Expect = 2.6
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMK 38
M+K +++ G +G G+ + ++L +
Sbjct: 2 MRKT--LVLLGAHGVGRRHIKNTLITKHP 28
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 1.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+ + G+ +GKT+ ++ +AS
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 27.7 bits (60), Expect = 1.3
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+L+ G++ GKT+++ + V T+ +
Sbjct: 5 LLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKTLE 42
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 1.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNF 300
R I++ GP G K+ + K L E +F
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29
Score = 26.8 bits (58), Expect = 2.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGE 56
I+I G +GTGK++L+ L + + + GE
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 27.8 bits (62), Expect = 1.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46
I ++G G GKT LI L +++ V
Sbjct: 71 IGLFGGAGVGKTVLIMELINNVAKAHGGYSV 101
Score = 25.9 bits (57), Expect = 6.6
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 251 RQSVEWPLKHPEAFARLGIKPPRG--ILMFGPPGCSKTMIAKALA 293
+ L L +G I +FG G KT++ L
Sbjct: 45 MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELI 89
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 27.6 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 273 RGILMFGPPGCSKTMIAKALATESKLNF 300
R +++ GP G K+ + K L E F
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF 28
Score = 26.1 bits (56), Expect = 4.5
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK 38
+++ G +G GK++L+ L
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHS 25
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 1.4
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
+L+ G +GK++ I +
Sbjct: 5 LLLLGTGESGKSTFIKQM 22
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 27.6 bits (60), Expect = 1.5
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
+L+ G +GK++++ +
Sbjct: 5 LLLLGAGESGKSTIVKQM 22
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.8 bits (61), Expect = 1.6
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 259 KHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATE 295
K+ + G K P I GP G K+ + +
Sbjct: 14 KYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNH 50
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 1.6
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
IL+ G +GK++ + +
Sbjct: 5 ILLLGAGESGKSTFLKQM 22
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 28.0 bits (62), Expect = 1.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46
I + GV G GK++ +AS + +
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.3 bits (59), Expect = 1.7
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
++ G GKT L+ S ++ + V D +S
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANV 46
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.4 bits (59), Expect = 1.8
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 6 QSNGMKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
QS K I I G GK+SL V + + + F
Sbjct: 1 QSKSRK----IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 41
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.5 bits (60), Expect = 1.8
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 11 KKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALD 70
N I IYG GTGKT L+ + + K + + E K + +
Sbjct: 34 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRN 93
Query: 71 H--APSLLLLDNLDVL 84
+ LLLLD++ L
Sbjct: 94 MYKSVDLLLLDDVQFL 109
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 1.9
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 9 GMKKCNGILIYGVNGTGKTSLIHSLASHM 37
G+ L+ G +GTGKT +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNG 50
Score = 27.3 bits (59), Expect = 2.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALATESKLN 299
G+ R L+ G G KT+ + +
Sbjct: 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 53
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 27.7 bits (61), Expect = 1.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVI 44
M + I G +G GKT+ L + +V
Sbjct: 1 MPTLLRVYIDGPHGMGKTTTTQLLVALGSRDDIVY 35
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 27.7 bits (61), Expect = 2.0
Identities = 26/171 (15%), Positives = 56/171 (32%), Gaps = 11/171 (6%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV----ADMFSKFYGEAEFRLKAAFDAALDH 71
LI GKT L+ ++A + + + D + E + +K A+
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFD 105
Query: 72 APSLL-LLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVS 130
P+ + V+ + + ++ + L+ + RL VV + VD +
Sbjct: 106 EPASRHVQVAEMVIEKAKRLVEHKKD-VIILLDSITRLARAYNTVVPASGKVLTGGVDAN 164
Query: 131 -LRTPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHG 180
L P R + ++ ++ + D++ F G
Sbjct: 165 ALHRPKRFFGAA----RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 211
Score = 26.1 bits (57), Expect = 5.3
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISVKI 305
L+ PP KTM+ + +A N +
Sbjct: 46 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 76
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 27.3 bits (59), Expect = 2.1
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 16 ILIYGVNGTGKTSLIHSLA---------SHMKVHTVVIQVADMFSKFYGEAEFRLKAAFD 66
I+I G +GKTSL+ L S + + + + D
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 67 AALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDN 126
A + L + + L +++ + E +++ + L
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 125
Query: 127 VDVSLRTPGRLDQEIELPVPSR 148
+ L+ EI+ + R
Sbjct: 126 ARPPSKIKDALESEIQKVIERR 147
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 96
Score = 26.1 bits (57), Expect = 2.1
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
M++ I G+ G G + +A + I +D+
Sbjct: 5 MRRVQQIHFIGIGGAG----MSGIAEILLNEGYQISGSDIADGVV 45
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.5 bits (61), Expect = 2.1
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAF 65
+ + G +G+GK+++ + + I + + Y A R + A
Sbjct: 44 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.2 bits (59), Expect = 2.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
+L G +G GKT+ ++ + + V F
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF 42
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 27.5 bits (60), Expect = 2.2
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHM 37
+ + G G GK++ + + +
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLL 78
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 26.9 bits (58), Expect = 2.3
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+++ G G GK++L L + V + D + K
Sbjct: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 44
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTV 42
+L G+ +GKT L L + T
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQ 29
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.9 bits (58), Expect = 2.4
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
I++ G + GKT L + +
Sbjct: 5 IIVIGDSNVGKTCLTYRFCA 24
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 26.8 bits (58), Expect = 2.4
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
L+ G GTGK+ L+H + F
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKI 46
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.9 bits (58), Expect = 2.4
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+++ G G GK++L + V + D + K
Sbjct: 7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT 45
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.6 bits (60), Expect = 2.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVAD----MFSKFYGEAEFRL 61
+L+ G GTGK+ L+ LA + + + D M SKF + + L
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIIL 102
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 26.6 bits (58), Expect = 2.5
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS 51
+L+ G +G GKT ++ + T + + F
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFK 44
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.7 bits (58), Expect = 2.5
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFS 51
IL+ G +G GK+ L+ + + + F
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 40
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.0 bits (58), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
++I G +G GKTSL+H +
Sbjct: 5 VIILGDSGVGKTSLMHRYVN 24
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
I G +G GKT+ + +A T + D G+
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 27.0 bits (58), Expect = 2.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
++I G +G GKTSL++ +
Sbjct: 5 VIILGDSGVGKTSLMNQYVN 24
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.8 bits (58), Expect = 2.7
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 1 MDYALQSNGMKKCNGILIYGVNGTGKTSLIHSLASHM 37
+D G K + IL G GTGKT L+ +
Sbjct: 15 LDEMC-GGGFFKDSIILATGATGTGKTLLVSRFVENA 50
Score = 26.4 bits (57), Expect = 4.2
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 268 GIKPPRGILMFGPPGCSKTMIAKALA 293
G IL G G KT++
Sbjct: 22 GFFKDSIILATGATGTGKTLLVSRFV 47
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 26.8 bits (58), Expect = 2.7
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+++ G G GK++L V AD + K
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKV 45
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 27.2 bits (60), Expect = 2.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 3 YALQSNGMKKCNGILIYGVNGTGKTSLIHSLAS 35
+ K N I ++G TGKT++ ++A
Sbjct: 94 LGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 2.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
I++ G + GKT+L+H A
Sbjct: 5 IVVVGDSQCGKTALLHVFAK 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 2.7
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+ ++G G GK+SL+
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK 24
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 3.0
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSLLL 77
+G NG GKT+L+ ++++++K I + F L + +
Sbjct: 32 FHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI----IVPRKISV 87
Query: 78 LDNLDVLCTGRNRSDQERRLLSCL 101
D L + + + ++ L
Sbjct: 88 EDYLKAVASLYGVKVNKNEIMDAL 111
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 3.0
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 18 IYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHA----- 72
+ G +G GKT+ + +A + I + D + F D A+
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 73 PSLLLLDNLDVLCTGRNRSDQERR 96
P + + DN+ R QE
Sbjct: 94 PHMTVYDNIAFPLKLRKVPRQEID 117
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 26.6 bits (57), Expect = 3.1
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+++ G GK+S+I
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 26.6 bits (57), Expect = 3.3
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+L+ G G GK++L
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIV 42
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.7 bits (59), Expect = 3.3
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 13/125 (10%)
Query: 76 LLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVVLLAVTTSLDNVDVSLR--- 132
+ +DN+ + + RR V Q L + + T+L+NV++ L
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL---------IPLLTALENVELPLIFKY 112
Query: 133 TPGRLDQEIELPVPSRDQRAAILHCLLTKVPHSLSTDQIQQVAFITHGFVGGDLATLLSN 192
+E + A + P+ LS Q Q+VA I L
Sbjct: 113 RGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA-IARALANNPPIILADQ 171
Query: 193 ATSAL 197
T AL
Sbjct: 172 PTGAL 176
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 26.5 bits (57), Expect = 3.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
++I G GKT L+ +
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.9 bits (58), Expect = 3.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVA 47
++ G G+GKT+L +++ + V V
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 26.5 bits (57), Expect = 3.6
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+ I+G G GK++L+ +
Sbjct: 5 LAIFGRAGVGKSALVVRFLT 24
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.3 bits (57), Expect = 3.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
I++ G G GKT L+
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQ 27
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.1 bits (56), Expect = 3.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+++ G + GK+SL+
Sbjct: 9 LVLLGESAVGKSSLVLRFVK 28
>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2
(UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 83
Score = 25.0 bits (55), Expect = 3.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 58 EFRLKAAFDAALDHAPSLLLLDNLDV 83
EF+ A F + PS++ LD+L V
Sbjct: 16 EFKKVATFLSRFKSIPSIVELDSLKV 41
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.1 bits (56), Expect = 3.8
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMF 50
M++ +++ G G GK++L + V + D +
Sbjct: 1 MREYK-LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 40
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 26.1 bits (56), Expect = 3.8
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLAS 35
+++ + + G G GK+S++
Sbjct: 2 LRELK-VCLLGDTGVGKSSIMWRFVE 26
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 26.4 bits (57), Expect = 3.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+++ G +G GKT L+
Sbjct: 9 VMLVGDSGVGKTCLLVRFKD 28
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
++ G GKTSLI
Sbjct: 3 LVFLGEQSVGKTSLITRFMY 22
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.2 bits (56), Expect = 3.9
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFY 54
+++ G GK+S++ S+ + F
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR 44
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 26.0 bits (56), Expect = 4.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+I G G GK+ L+H
Sbjct: 7 YIIIGDMGVGKSCLLHQFT 25
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.5 bits (58), Expect = 4.0
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQV 46
I + G G GKT+ H + I +
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.3 bits (56), Expect = 4.1
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+++ G G GK++L + A
Sbjct: 6 VVLIGEQGVGKSTLANIFA 24
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 26.0 bits (56), Expect = 4.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
ILI G + GKTS + A
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 26.2 bits (56), Expect = 4.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 16 ILIYGVNGTGKTSLIHSLA 34
+++ G G GK++L
Sbjct: 9 LVVVGGGGVGKSALTIQFI 27
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.1 bits (56), Expect = 4.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 16 ILIYGVNGTGKTSLIHSLASH 36
+++ G GKTSL+ +
Sbjct: 6 VVLLGEGCVGKTSLVLRYCEN 26
>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 497
Score = 26.5 bits (58), Expect = 4.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 138 DQEIELPVPSRDQRAAILHCLLTKVPHSLSTD 169
D E+ +P +R+ L+ + H L
Sbjct: 31 DLEVNMPKEGILERSVAQ-GELSVLSHELLLH 61
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 26.5 bits (57), Expect = 4.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 17 LIYGVNGTGKTSLIHSLA 34
I G NG+GK+++ ++
Sbjct: 30 AIVGANGSGKSNIGDAIL 47
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.1 bits (56), Expect = 4.8
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 16 ILIYGVNGTGKTSLIHSLASH 36
+++ G G GK+SL++ ++
Sbjct: 9 VILLGDGGVGKSSLMNRYVTN 29
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.1 bits (56), Expect = 4.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
++ G GKT L+ S +
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 25.7 bits (55), Expect = 5.2
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 275 ILMFGPPGCSKTMIAKALATESKLNFISV 303
+++ GP K+ + + L SV
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSV 33
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 26.4 bits (57), Expect = 5.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKV--HTVVIQVADMFSKF 53
+ I GV G GK++ I +L S + H V + D S
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR 93
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 25.7 bits (55), Expect = 5.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 16 ILIYGVNGTGKTSLIHSLASH 36
+ + G +GK+SLIH +
Sbjct: 8 LGVLGDARSGKSSLIHRFLTG 28
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.6 bits (55), Expect = 5.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+I G G GK+ L+
Sbjct: 6 YIIIGDTGVGKSCLLLQFTD 25
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 25.6 bits (55), Expect = 5.8
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 16 ILIYGVNGTGKTSLIHSLAS 35
+++ G +G GK++L+
Sbjct: 7 VVLIGDSGVGKSNLLSRFTR 26
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 25.9 bits (56), Expect = 5.8
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMK---------VHTVVIQVADMFSKFYGEAEFRLKAAFD 66
+ ++G G+GK+ + S + + S F + L +
Sbjct: 47 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSE 106
Query: 67 AALDHAPSLLLLDNLDVLCTGRNRSDQERRLLSCLVTQVDRLHELQACVV--LLAVTTSL 124
L + PS+ + ++ + N L V A + VTT
Sbjct: 107 DDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRD 166
Query: 125 DNVDVSLRTP 134
+ +
Sbjct: 167 VEISNAASQT 176
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 25.6 bits (55), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 16 ILIYGVNGTGKTSLIHSLASH 36
ILI G +G GK+SL+
Sbjct: 10 ILIIGESGVGKSSLLLRFTDD 30
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.9 bits (57), Expect = 6.5
Identities = 10/45 (22%), Positives = 13/45 (28%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFR 60
LI G TGKTS+ + K Y +
Sbjct: 71 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK 115
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 25.6 bits (55), Expect = 6.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 15 GILIY--GVNGTGKTSLIHSLASHMKVHTVVIQV 46
G L +G GK+SLI +L ++ + V
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 25.8 bits (56), Expect = 7.1
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 248 LKLRQSVEWPLKHPEAFARLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFISVKI 305
+ ++ + G + P I + G K+ A+ L ++
Sbjct: 56 FYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 25.8 bits (55), Expect = 7.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 17 LIYGVNGTGKTSLIHSL 33
I G NG+GK++++ ++
Sbjct: 29 SIIGPNGSGKSNMMDAI 45
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.5 bits (55), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 16 ILIYGVNGTGKTSLIHSL 33
IL+ G G GK+S ++S+
Sbjct: 35 ILVMGKGGVGKSSTVNSI 52
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 25.2 bits (55), Expect = 8.9
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAFDAALDHAPSL 75
I G +G GK+++ L + I + +R + F + ++
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF---VSQDSAI 87
Query: 76 LLLDNLDVLCTGRNR 90
+ + L G
Sbjct: 88 MAGTIRENLTYGLEG 102
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 25.2 bits (55), Expect = 9.3
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 16 ILIYGVNGTGKTSLIHSLASHMKVHTVVIQVADMFSKFYGEAEFRLKAAF 65
+ G NG+GK+++ L + + + + Y + A
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAA 92
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 25.3 bits (54), Expect = 9.8
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 10 MKKCNGILIYGVNGTGKTSLIHSLASHM 37
M++ + IYG G GK++ +L S +
Sbjct: 1 MRQ---VAIYGKGGIGKSTTTQNLTSGL 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.393
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,050,448
Number of extensions: 46390
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 266
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)