BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5651
(843 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00577|PURA_HUMAN Transcriptional activator protein Pur-alpha OS=Homo sapiens GN=PURA
PE=1 SV=2
Length = 322
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 33/205 (16%)
Query: 318 NKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNAL------------ 365
NK+FY D+KQ+ +F+KI+EV ++++ +SMSV RD+L
Sbjct: 70 NKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEHYAQLGPSQP 129
Query: 366 --LTAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSS- 422
L Q+ PR +KSE L+++ R+Y++DLK+N R RF+ I Q + G L S
Sbjct: 130 PDLAQAQDEPRR------ALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGST 183
Query: 423 ----IAFPAQDLGPIIGLISDLQQEHSCPEDEDGAPEGNYMRCNNKRFFFNVSKNGKGTF 478
IA PAQ L ++ L ++ E+ PEG + +NKRFFF+V N G F
Sbjct: 184 QGQTIALPAQGLIEFRDALAKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVF 243
Query: 479 MRISE--------ISTPSKVLTNIG 495
MR+SE I+ P KV G
Sbjct: 244 MRVSEVKPTYRNSITVPYKVWAKFG 268
>sp|P42669|PURA_MOUSE Transcriptional activator protein Pur-alpha OS=Mus musculus GN=Pura
PE=1 SV=1
Length = 321
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 33/205 (16%)
Query: 318 NKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNAL------------ 365
NK+FY D+KQ+ +F+KI+EV ++++ +SMSV RD+L
Sbjct: 69 NKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEHYAQLGPSQP 128
Query: 366 --LTAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSS- 422
L Q+ PR +KSE L+++ R+Y++DLK+N R RF+ I Q + G L S
Sbjct: 129 PDLAQAQDEPRR------ALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGST 182
Query: 423 ----IAFPAQDLGPIIGLISDLQQEHSCPEDEDGAPEGNYMRCNNKRFFFNVSKNGKGTF 478
IA PAQ L ++ L ++ E+ PEG + +NKRFFF+V N G F
Sbjct: 183 QGQTIALPAQGLIEFRDALAKLIDDYGVEEEPAELPEGTSLTVDNKRFFFDVGSNKYGVF 242
Query: 479 MRISE--------ISTPSKVLTNIG 495
MR+SE I+ P KV G
Sbjct: 243 MRVSEVKPTYRNSITVPYKVWAKFG 267
>sp|Q6PHK6|PURB_DANRE Transcriptional activator protein Pur-beta OS=Danio rerio GN=purb
PE=2 SV=3
Length = 297
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 47/228 (20%)
Query: 303 EERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHL 362
E+ + + +K NK+FY D+KQ+ +FIKI+EV +++++ +SMSV RD+L
Sbjct: 23 EQETQELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRDYL 82
Query: 363 NALLTAH------------QNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTI 410
+ + Q++ +KSE L+++ R+Y+LDLK+N R RF+ I
Sbjct: 83 GDFIEHYAQLGPSSPEQIAQSSGGDDGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRI 142
Query: 411 SQLL------------------PVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPEDEDG 452
Q + G +IA PAQ L ++ L ++ EDE+
Sbjct: 143 RQTVNRGPGFGVGGGGGPGGGVQAG---QTIALPAQGLIEFRDALAKLIDDYGG-EDEEL 198
Query: 453 A------------PEGNYMRCNNKRFFFNVSKNGKGTFMRISEISTPS 488
+ PEG + ++KRFFF+V N G F+R+SE+ PS
Sbjct: 199 SGGPGAAGGYGELPEGTSIMVDSKRFFFDVGSNKYGVFLRVSEV-KPS 245
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 19/124 (15%)
Query: 375 HRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGK----LS-SIAFPAQD 429
R ++T + S+ L +R++LD+K N + RF+ I+++ G K LS S+A +D
Sbjct: 21 QREQETQELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMSVAAEFRD 80
Query: 430 -LGPIIGLISDLQQEHSCPE-------DEDGAP----EGNYMRCNNKRFFFNVSKNGKGT 477
LG I + L S PE +DG P + ++ N++++ ++ +N +G
Sbjct: 81 YLGDFIEHYAQLGP--SSPEQIAQSSGGDDGGPRRALKSEFLVRENRKYYLDLKENQRGR 138
Query: 478 FMRI 481
F+RI
Sbjct: 139 FLRI 142
>sp|Q96QR8|PURB_HUMAN Transcriptional activator protein Pur-beta OS=Homo sapiens GN=PURB
PE=1 SV=3
Length = 312
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 47/235 (20%)
Query: 294 FHKEKESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMS 353
F E+ + + +K NK+FY D+KQ+ +F+KI+EV +++++ +SM+
Sbjct: 19 FQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMA 78
Query: 354 VVGHLRDHLNALLTAHQ----NTPRHRYRDTH-------TIKSEVLIKDTRRYFLDLKDN 402
V RD L + + ++P +KSE L+++ R+Y+LDLK+N
Sbjct: 79 VAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKEN 138
Query: 403 GRARFVTISQ----------------LLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSC 446
R RF+ I Q L G +IA PAQ L ++ L ++
Sbjct: 139 QRGRFLRIRQTVNRGGGGFGAGPGPGGLQSG---QTIALPAQGLIEFRDALAKLIDDYGG 195
Query: 447 PEDE-----------------DGAPEGNYMRCNNKRFFFNVSKNGKGTFMRISEI 484
+DE PEG + ++KRFFF+V N G F+R+SE+
Sbjct: 196 EDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEV 250
>sp|Q6PAC9|PURBA_XENLA Transcriptional activator protein Pur-beta-A OS=Xenopus laevis
GN=purb-a PE=2 SV=3
Length = 323
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 45/229 (19%)
Query: 301 ANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRD 360
+ E+ + + TK NK+FY D+KQ+ +FIKI+EV +++++ +SM V RD
Sbjct: 25 SREQETQELATKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMGVAAEFRD 84
Query: 361 HLNALL----------------TAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGR 404
+L + + ++ +KSE L+++ R+Y+LDLK+N R
Sbjct: 85 YLGDFIEHYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQR 144
Query: 405 ARFVTISQLL-------------PVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPEDED 451
RF+ I Q + +IA PAQ L ++ L ++ +DE
Sbjct: 145 GRFLRIRQTINRGPGFSGGAGGGAGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDEG 204
Query: 452 GA----------------PEGNYMRCNNKRFFFNVSKNGKGTFMRISEI 484
PEG + ++KRFFF+V N G F+R+SE+
Sbjct: 205 VGLGGAGGGGGGGMYGELPEGTSITVDSKRFFFDVGSNKYGVFLRVSEV 253
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 462 NNKRFFFNVSKNGKGTFMRISEI---STPSKVLTNIGIKSNIK 501
NKRF+ +V +N KG F++I+E+ + S++ ++G+ + +
Sbjct: 41 QNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMGVAAEFR 83
>sp|O35295|PURB_MOUSE Transcriptional activator protein Pur-beta OS=Mus musculus GN=Purb
PE=1 SV=3
Length = 324
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 59/232 (25%)
Query: 303 EERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHL 362
E+ + + +K NK+FY D+KQ+ +F+KI+EV +++++ +SM+V RD L
Sbjct: 40 EQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSL 99
Query: 363 N-----------------ALLTAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRA 405
A PR +KSE L+++ R+Y+LDLK+N R
Sbjct: 100 GDFIEHYAQLGPSSPEQLAAGAEEGGGPR------RALKSEFLVRENRKYYLDLKENQRG 153
Query: 406 RFVTISQ----------------LLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPED 449
RF+ I Q L G +IA PAQ L ++ L ++ ED
Sbjct: 154 RFLRIRQTVNRGGGGFGGGPGPGGLQSG---QTIALPAQGLIEFRDALAKLIDDYGGDED 210
Query: 450 E-----------------DGAPEGNYMRCNNKRFFFNVSKNGKGTFMRISEI 484
E PEG + ++KRFFF+V N G F+R+SE+
Sbjct: 211 ELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEV 262
>sp|Q8R4E6|PURG_MOUSE Purine-rich element-binding protein gamma OS=Mus musculus GN=Purg
PE=1 SV=1
Length = 350
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 120/265 (45%), Gaps = 57/265 (21%)
Query: 299 ESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTR------NQIHISM 352
+S I+ + +K K+FY D+KQS +F+KI+EV + + R +++ +S+
Sbjct: 53 QSGGTSEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSL 112
Query: 353 SVVGHLRDHLNALLT--AHQNTPRHRY------------RDTHT---------------- 382
SV L+D L + AH HR R H+
Sbjct: 113 SVAAELKDCLGDFIEHYAHLGLKGHRQEHGQSKEQVSRRRQKHSAPSPPVSVGSEEHPHS 172
Query: 383 -IKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVG-----------GKLSSIAFPAQDL 430
+K++ + +D R+Y+LDLK+N R RF+ I Q + G G+ +I PAQ +
Sbjct: 173 VLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQDQTIVLPAQGM 232
Query: 431 ----GPIIGLISDLQQ----EHSCPEDED-GAPEGNYMRCNNKRFFFNVSKNGKGTFMRI 481
++ LI D + E C +D+ PEG R +NKRF+F+V N G F+++
Sbjct: 233 IEFRDALVQLIEDYGEGDIEERRCGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKV 292
Query: 482 SEISTPSKVLTNIGIKSNIKTDTNI 506
SE+ P + + K+ + N
Sbjct: 293 SEVRPPYRNTITVPFKAWTRFGENF 317
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 296 KEKESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEV 339
+E+ +++ +E+ + ++ NK+FYFD+ +K F+K+SEV
Sbjct: 252 EERRCGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEV 295
>sp|Q8AVS4|PURBB_XENLA Transcriptional activator protein Pur-beta-B OS=Xenopus laevis
GN=purb-b PE=2 SV=3
Length = 328
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 55/239 (23%)
Query: 301 ANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRD 360
+ E+ + + +K NK+FY D+KQ+ +FIKI+EV +++++ +SM+V RD
Sbjct: 25 SREQETQELASKRLDIQNKRFYLDVKQNAKGRFIKIAEVGAGGSKSRLTLSMAVAAEFRD 84
Query: 361 HLNALL----------------TAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGR 404
+L + + ++ +KSE L+++ R+Y+LDLK+N R
Sbjct: 85 YLGDFIEHYAQLGPSSPEQIAQASGEDGAGGPGGPRRALKSEFLVRENRKYYLDLKENQR 144
Query: 405 ARFVTISQ----------------LLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPE 448
RF+ I Q L G +IA PAQ L ++ L ++ +
Sbjct: 145 GRFLRIRQTINRGPGFSGGTGGGPGLQSG---QTIALPAQGLIEFRDALAKLIDDYGGED 201
Query: 449 DEDGA-------------------PEGNYMRCNNKRFFFNVSKNGKGTFMRISEISTPS 488
DE PEG + ++KRFFF+V N G F+R+SE+ PS
Sbjct: 202 DEGMGLGSGASGGGAGGGGMYGELPEGTSITVDSKRFFFDVGSNKYGVFLRVSEV-KPS 259
>sp|Q9UJV8|PURG_HUMAN Purine-rich element-binding protein gamma OS=Homo sapiens GN=PURG
PE=2 SV=1
Length = 347
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 57/265 (21%)
Query: 299 ESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTR------NQIHISM 352
++ I+ + +K K+FY D+KQS +F+KI+EV + + R +++ +S+
Sbjct: 50 QAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSL 109
Query: 353 SVVGHLRDHLNALLT--AHQNTPRHRYRDTHT---------------------------- 382
SV L+D L + AH HR H+
Sbjct: 110 SVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHS 169
Query: 383 -IKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVG-----------GKLSSIAFPAQDL 430
+K++ + +D R+Y+LDLK+N R RF+ I Q + G G+ +I PAQ +
Sbjct: 170 VLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGM 229
Query: 431 ----GPIIGLI-----SDLQQEHSCPEDEDGAPEGNYMRCNNKRFFFNVSKNGKGTFMRI 481
++ LI D+++ +D PEG R +NKRF+F+V N G F+++
Sbjct: 230 IEFRDALVQLIEDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKV 289
Query: 482 SEISTPSKVLTNIGIKSNIKTDTNI 506
SE+ P + + K+ + N
Sbjct: 290 SEVRPPYRNTITVPFKAWTRFGENF 314
Score = 37.0 bits (84), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 296 KEKESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEV 339
+E+ +++ +E+ + ++ NK+FYFD+ +K F+K+SEV
Sbjct: 249 EERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEV 292
>sp|Q68A21|PURB_RAT Transcriptional activator protein Pur-beta OS=Rattus norvegicus
GN=Purb PE=1 SV=3
Length = 315
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 109/245 (44%), Gaps = 55/245 (22%)
Query: 303 EERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHL 362
E+ + + +K NK+FY D+KQ+ +F+KI+EV +++++ +SM+V RD L
Sbjct: 31 EQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSL 90
Query: 363 NALLTAHQ----NTPRHRYRDTH-------TIKSEVLIKDTRRYFLDLKDNGRARFVTIS 411
+ + ++P +KSE L+++ R+Y+LDLK+N R RF+ I
Sbjct: 91 GDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIR 150
Query: 412 Q----------------LLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPEDE----- 450
Q L G +IA PAQ L ++ L ++ +DE
Sbjct: 151 QTVNRGGGGFGGGPGPGGLQSG---QTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGP 207
Query: 451 ------------DGAPEGNYMRCNNKRFFFNVSKNGKGTFMRISE--------ISTPSKV 490
PEG + ++KRFFF+V N G F+R+SE I+ P K
Sbjct: 208 GGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKA 267
Query: 491 LTNIG 495
G
Sbjct: 268 WGKFG 272
>sp|Q8CDF7|EXD1_MOUSE Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus
GN=Exd1 PE=2 SV=1
Length = 570
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 26 QEAQSAMATILNESKVGLDLEGMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKL 85
Q+ +AM I +S + + EG ++ GK+ + +A N ++++FD++ F+ L
Sbjct: 143 QKFGAAMLHIKKQSVLSVAAEGANVCRHGKLCWLQVAT-NSRVYLFDIFLLGSRAFNNGL 201
Query: 86 HEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHT 145
+LE RILKVIH + L + I L NV+DTQ A LQ S + + +P+
Sbjct: 202 QMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVA-DVLQFS---METGGFLPNC 257
Query: 146 IGL--NDLLKFYKISPNN--FKKNIQNLYRENPHIWKTRPLTSDML 187
I L++ K++P F + Q +ENP IW TRPL +L
Sbjct: 258 ISTLQESLIRHLKVAPRYLFFLEERQKRIQENPEIWLTRPLPPSLL 303
>sp|Q8NHP7|EXD1_HUMAN Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens
GN=EXD1 PE=2 SV=4
Length = 514
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 9/166 (5%)
Query: 26 QEAQSAMATILNESKVGLDLEGMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKL 85
Q+ +A+ I ++ + + EG ++ GK+ + +A N ++++FD++ F L
Sbjct: 86 QKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQVA-TNCRVYLFDIFLLGSRAFHNGL 144
Query: 86 HEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHT 145
+LE RILKVIH + L + I L NV+DTQ A LQ S + + +P+
Sbjct: 145 QMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVA-DVLQFS---METGGYLPNC 200
Query: 146 IGL--NDLLKFYKISPN--NFKKNIQNLYRENPHIWKTRPLTSDML 187
I L+K +++P +F + Q L +ENP +W RP++ +L
Sbjct: 201 ITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRPVSPSLL 246
>sp|Q9SKZ1|PUR_ARATH Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1
PE=1 SV=2
Length = 296
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 64/232 (27%)
Query: 306 IEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNAL 365
+E++ +K Q +K FYFD+K++ +++KISE TR+ I + S + D N
Sbjct: 29 VELV-SKTLQVEHKLFYFDLKENPRGRYLKISE-KTSATRSTIIVPSSGISWFLDLFNYY 86
Query: 366 LTAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTISQ----------LLP 415
+ + + H + S+ L D++ ++ D+ +N R RF+ +S+ ++P
Sbjct: 87 VNSEE----------HELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVP 136
Query: 416 VGGKLSS--IAF----------------PAQ------------DLG----PIIGLISDLQ 441
G AF P Q D+G P G
Sbjct: 137 AGSSPDEGWAAFRNILAEIHEASGLFVMPNQVKPSDGQEHLVDDVGAGFIPGHGSQQPSS 196
Query: 442 QEH------SCPEDEDGAPEG--NYMRCNNKRFFFNVSKNGKGTFMRISEIS 485
EH P E+ G +R + KRFFF++ N +G F+RISE++
Sbjct: 197 SEHNVDRTIDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVA 248
Score = 42.0 bits (97), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 52/178 (29%)
Query: 302 NEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRN--------------- 346
N E E+ +K Q +K FYFDI +++ +F+K+SE ++ + R+
Sbjct: 88 NSEEHELF-SKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWA 146
Query: 347 -------QIHISMSVV------------GHLRDHLNA-LLTAH--QNTPRHRYRDTHTIK 384
+IH + + HL D + A + H Q + TI
Sbjct: 147 AFRNILAEIHEASGLFVMPNQVKPSDGQEHLVDDVGAGFIPGHGSQQPSSSEHNVDRTID 206
Query: 385 ------------SEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQDL 430
S+V+ D +R+F DL +N R F+ IS++ G SSI P L
Sbjct: 207 SPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEV--AGSDRSSIILPLSGL 262
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 23/168 (13%)
Query: 41 VGLDLEGMDL---GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKV 97
VG D+E L G GKV+L+ L + K ++F V S + +F L +LE+ + K
Sbjct: 79 VGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSS--MSVFPQGLKMLLENKAVKKA 136
Query: 98 IHGAFGDAGGLLSNFNIRLKNVYD-TQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYK 156
G GD LL +F+I+LKN + T A L+ ++ L+ LV H +G LLK
Sbjct: 137 GVGIEGDQWKLLRDFDIKLKNFVELTDVANKKLKCTETWSLNS-LVKHLLG-KQLLKDKS 194
Query: 157 ISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRM 204
I +N W PLT D LYAA D + ++ +
Sbjct: 195 IRCSN---------------WSKFPLTEDQKLYAATDAYAGFIIYRNL 227
>sp|P86252|PURA_RAT Transcriptional activator protein Pur-alpha (Fragments) OS=Rattus
norvegicus GN=Pura PE=1 SV=1
Length = 138
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 333 FIKISEVNMDQTRNQIHISMSVVGHLRDHLNALLTAHQNTPRHRYRDTHTIKSEVLIKDT 392
F+KI+EV N++ +SMSV RD+L + + + D + D
Sbjct: 1 FLKIAEVGAGG--NKLTLSMSVAVEFRDYLGDFIEHYAQLGPSQPPDLAQAQ------DE 52
Query: 393 RRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQDLGPIIGLIS-DLQQEHSCPEDED 451
RY++DLK+N R + +Q G+ +IA PAQ GLI L ++ E+
Sbjct: 53 PRYYMDLKENQRGPGLGSTQ-----GQ--TIALPAQ------GLIEFRLIDDYGVEEEPA 99
Query: 452 GAPEGNYMRCNNKRFFFNVSKNGKGTFMRISEI 484
PEG + +NKRFFF+V N ++SE+
Sbjct: 100 ELPEGTSLTVDNKRFFFDVGSN------KVSEV 126
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 23/168 (13%)
Query: 41 VGLDLEGMDLGVDGK---VSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKV 97
VG D+E + GK V+++ L + K ++F + S + +F L +LE+ I K
Sbjct: 73 VGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISS--MSVFPQGLKMLLENKSIKKA 130
Query: 98 IHGAFGDAGGLLSNFNIRLKNVYD-TQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYK 156
G GD LL +F+++L++ + T A L+ ++ L+ LV H +G LLK
Sbjct: 131 GVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAETWSLN-GLVKHVLG-KQLLKDKS 188
Query: 157 ISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRM 204
I +N W PLT D LYAA D + L ++ ++
Sbjct: 189 IRCSN---------------WSNFPLTEDQKLYAATDAYAGLIIYQKL 221
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 29/179 (16%)
Query: 33 ATILNESKVGLDLEGMDL---GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVL 89
+++L E +G D+E + G GKV+L+ + + K ++F + P+ F L +L
Sbjct: 65 SSLLEEDVLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHI--SPMAGFPKGLKRLL 122
Query: 90 ESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDL-VPHTIGL 148
E + + KV G GD L+S++ ++LK ++LS+ + +Q L
Sbjct: 123 EDESVRKVGVGIEGDQWKLMSDYELKLKGF---------IELSE--MANQKLRCKEKWTF 171
Query: 149 NDLLKFYKISPNNFKKNIQNLYRENPHI---WKTRPLTSDMLLYAAADVESLLALFHRM 204
N L+K FK + LY+ + W LT D LYAA D + L ++ ++
Sbjct: 172 NGLIKHL------FK---EQLYKRKSYRCSNWDIFLLTEDQKLYAATDAYAGLLIYKKL 221
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2
Length = 887
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 20/123 (16%)
Query: 85 LHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPH 144
L+E L I+KV HGA D L +F + + N++DT A RLL +L H
Sbjct: 352 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAA--------RLL--NLARH 401
Query: 145 TIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRM 204
+ L+ LL+ Y +N + + + W+ RPL +ML YA D LL ++ RM
Sbjct: 402 S--LDHLLRLYCGVESNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDRM 451
Query: 205 TKE 207
E
Sbjct: 452 RLE 454
>sp|Q6NRD5|EXD1_XENLA Exonuclease 3'-5' domain-containing protein 1 OS=Xenopus laevis
GN=exd1 PE=2 SV=1
Length = 444
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 31 AMATILNESKVGLDLEGMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLE 90
A+ + N+ + + G ++ GK+S + A ++ ++++FDV +F L VLE
Sbjct: 113 AIRHLQNQKVISIGAVGQNICRHGKLSWLQFATRS-RVYLFDVLVLGSKVFKNGLQMVLE 171
Query: 91 SDRILKVIHGA--FGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQD---LVPH- 144
ILKVIH GD L + I L NV+DT Q+ D L S + +PH
Sbjct: 172 DKGILKVIHDCRWLGDI--LSHQYGIILNNVFDT-------QVGDVYLFSMETGGFLPHG 222
Query: 145 TIGLND-LLKFYKISPN--NFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLAL 200
T L + L+ + P+ +F + Q L +E IW RP+ +L + +V L+ L
Sbjct: 223 TRTLEECLIHHLSMLPSKVSFLAHRQTLTKEYHDIWFDRPMDPTLLKLLSLEVTYLMPL 281
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2
Length = 885
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 85/203 (41%), Gaps = 25/203 (12%)
Query: 7 PQNNLLRTLMN-RTNLITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQ 64
PQ L R + + I+ + E +LN + +DLE G L+ ++ +
Sbjct: 275 PQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTR 334
Query: 65 NGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQC 124
+ FI D M+ L+E L I+KV HGA D L +F + + N++DT
Sbjct: 335 T-EDFIIDTLELRSDMY--ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391
Query: 125 AFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTS 184
A L L H+ L+ LLK Y N N Q + W+ RPL
Sbjct: 392 AARLLNLGR----------HS--LDHLLKLY----CNVDSNKQYQLAD----WRIRPLPE 431
Query: 185 DMLLYAAADVESLLALFHRMTKE 207
+ML YA D LL ++ +M E
Sbjct: 432 EMLSYARDDTHYLLYIYDKMRLE 454
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1
Length = 733
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 114/260 (43%), Gaps = 52/260 (20%)
Query: 27 EAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKL 85
E +S + + N ++ +DLE D G V L+ ++ + + ++ D + L
Sbjct: 221 ELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRE-RDYLVDT-----LKLRENL 274
Query: 86 H---EVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLV 142
H EV + I+KV HGAF D L + + + ++DT A A+ L PR
Sbjct: 275 HILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGL--PR------- 325
Query: 143 PHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFH 202
H++ LL+ + NFK + + + W+ RPL+ M YA AD LL ++
Sbjct: 326 -HSLAY--LLENFA----NFKTSKKYQLAD----WRIRPLSKPMTAYARADTHFLLNIYD 374
Query: 203 RMTKEYALKQNRLLLDNLIYETLFNHVVPLNIRKRRQFRQNQLRRWRKDLMSSKRPYPYI 262
++ +N+L+ N + L+ N+ KRR F ++ R L S Y I
Sbjct: 375 QL-------RNKLIESNKLAGVLYES---RNVAKRR-FEYSKYR----PLTPSSEVYSPI 419
Query: 263 EEVNSNEYIWR---NDYNVP 279
E+ E W+ YN+P
Sbjct: 420 EK----ESPWKILMYQYNIP 435
>sp|Q0P3U3|EXD1_DANRE Exonuclease 3'-5' domain-containing protein 1 OS=Danio rerio
GN=exd1 PE=2 SV=1
Length = 378
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 47 GMDL-GVDGKVSLVSLALQNGKI-FIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGD 104
G D+ G G+ L L + K+ ++FD+ F L +LE+ ILKV+H
Sbjct: 140 GADVYGQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILKVLHDCRCI 199
Query: 105 AGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQD---LVPHTIGLNDLLKFYKISPNN 161
L + F ++L NV+DTQ A L ++ D +P + L+ L +I P
Sbjct: 200 TRCLRTEFRVQLTNVFDTQVAELLLFFNESGGFLPDRPASLPELLQLHLRLTTAEIQPLC 259
Query: 162 FKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVE 195
K Q RE +W RP D+L + V+
Sbjct: 260 SK---QQQSRECVQLWYVRPCPPDLLSLMCSSVQ 290
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 77 PLIMFD-GKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPR 135
PL++ D G E+LE R++KV+H D L ++DTQ A L ++
Sbjct: 62 PLLVRDWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLAAAYLGMA--- 118
Query: 136 LLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVE 195
H++G + L+K ++ + K+ E W RPLT + YAA DV+
Sbjct: 119 --------HSMGYSKLVK--EVLDIDLPKD------ETRSDWLQRPLTEMQMRYAADDVQ 162
Query: 196 SL----LALFHRMTKE---YALKQNRLLLDNLIYET 224
L LAL R+++E + L+ L+ NL E+
Sbjct: 163 HLAQVYLALDARLSEEKRAWLLEDGAELVANLCRES 198
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 70/176 (39%), Gaps = 32/176 (18%)
Query: 39 SKVGLDLEGMDLGVD-GKVSLVSLALQNGKIFIFDVYSCPLIMFD-GKLHEVLESDRILK 96
S V LD E M + K+ L+ L + + D PL + D +L + ++LK
Sbjct: 50 SAVALDTEFMRVSTYFPKLGLIQL-YDGEHVSLID----PLAITDFSPFVALLANPKVLK 104
Query: 97 VIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY- 155
++H D L F+ + + DTQ L L + GL L + Y
Sbjct: 105 ILHSCSEDLLVFLQEFDQLPRPMIDTQIMARFLGLGT-----------SAGLAKLAQQYL 153
Query: 156 --KISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYA 209
+I + N W RPL+ L YAA DV LL L+H + KE A
Sbjct: 154 NVEIDKGATRTN-----------WIKRPLSDIQLQYAAGDVWYLLPLYHILEKELA 198
>sp|Q3LGD4|RFP4A_DANRE Rab11 family-interacting protein 4A OS=Danio rerio GN=rab11fip4a
PE=2 SV=1
Length = 621
Score = 36.6 bits (83), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 480 RISEISTPSKVLTNIGIKSNIKTDTNI---RTNNINVKMKTN-------IIIKMKRRINI 529
+ISE+ S L N +KS +K + R + + ++K + ++KR
Sbjct: 335 KISELENDS--LANGDLKSKLKQENTQLVHRVHELEEQIKDQETRAEQCLEEELKRHREA 392
Query: 530 ITTMKRSNIIKMKRRTNIITKMKMSNIKMKINTIKMKMKTNNITKAKMKTSIKMK-INII 588
+ M+R +++ +N + +++ N +MK+N ++K +T + + K + + K++ ++
Sbjct: 393 YSKMERDKSTEIELLSNRVQQLEEENAEMKVNVCRLKSQTEKLDQEKQRMTDKLEDTSLR 452
Query: 589 TKMKMEIIAKM 599
K +M++ KM
Sbjct: 453 LKDEMDLYRKM 463
>sp|A8GFH0|RND_SERP5 Ribonuclease D OS=Serratia proteamaculans (strain 568) GN=rnd PE=3
SV=2
Length = 373
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 62/168 (36%), Gaps = 30/168 (17%)
Query: 87 EVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQ--CAFTALQLSDPRLLSQDLVPH 144
E+L + +++K +H D L+ F + DTQ AFT P
Sbjct: 68 ELLSNTQVVKFLHAGSEDLEVFLNAFKTLPTPMVDTQILAAFTG-------------RPM 114
Query: 145 TIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRM 204
+ G L+ Y ++ E W RPLT +YAAADV LL + R+
Sbjct: 115 SCGFATLVAEYM--------EVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRL 166
Query: 205 TKE-------YALKQNRLLLDNLIYETLFNHVVPLNIRKRRQFRQNQL 245
+E A LLL ETL + I Q R QL
Sbjct: 167 VQETEEAGWTAAASNECLLLCQRRSETLAPELAYREITNAWQLRPRQL 214
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston
1) GN=rnd PE=3 SV=1
Length = 406
Score = 35.0 bits (79), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 24/208 (11%)
Query: 2 EAKCQPQNNLLRTLMNRT-NLITDVQEAQSAMATILNESKVGLDLEGM-DLGVDGKVSLV 59
+ K Q + NL + NR LIT + + A+AT+ N V +D E + + ++ L+
Sbjct: 6 QKKSQEKTNLNLSGYNRMMKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLI 65
Query: 60 SLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNV 119
LA + + I D S + + +++ + +I+KV H A D + + +
Sbjct: 66 QLASPDTTVLI-DPISQDIDL--KPFFDLMVNKKIVKVFHAARQDIETIYHLGGVIPSPL 122
Query: 120 YDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKT 179
+DTQ A + D Q +V G Y++ ++ + W
Sbjct: 123 FDTQIAGSICGFGDSISYDQ-IVQRCTG-------YQLDKSSRFTD-----------WSF 163
Query: 180 RPLTSDMLLYAAADVESLLALFHRMTKE 207
RPL+ LLYA ADV L ++ + K+
Sbjct: 164 RPLSEKQLLYALADVTYLRDVYLLLKKQ 191
>sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2
Length = 4450
Score = 34.7 bits (78), Expect = 3.4, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 24 DVQEAQSAMATILNESKVG---LDLEGMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIM 80
+V E ++ +AT L + + + LE M L +GK+ SL +G I I Y P M
Sbjct: 2996 NVAELRAYLATDLPAAMIPSYFVSLEAMPLTANGKIDKRSLPEPDGSISIGTEYVAPRTM 3055
Query: 81 FDGKLHEVLESDRILKV--IHGAFGDAGG 107
+GKL E+ + L+ IH F GG
Sbjct: 3056 LEGKLEEIWKDVLGLQRVGIHDDFFTIGG 3084
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 18 RTNLITDVQEAQSAMATILNESKV------GLDLEGMDLGVDGKVSLVSLALQNGKIFIF 71
+ ++T QEA+ L S++ G+D E ++L +GK S +SL +
Sbjct: 76 KAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNL--EGKASPLSLLQMASPSGLC 133
Query: 72 DVYSCPLIMFDGK-----LHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAF 126
+ P ++ GK L ++L ILKV G DA LL ++ + ++ D + +
Sbjct: 134 VLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLR--Y 191
Query: 127 TALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDM 186
A++ + +L+ + + L L + NF + L R + W LT D
Sbjct: 192 LAMRQRN------NLLCNGLSLKSLAETVL----NFPLDKSLLLRCS--NWDAETLTEDQ 239
Query: 187 LLYAAADVESLLALF 201
++YAA D + +ALF
Sbjct: 240 VIYAARDAQISVALF 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,628,777
Number of Sequences: 539616
Number of extensions: 10631467
Number of successful extensions: 32872
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 32383
Number of HSP's gapped (non-prelim): 609
length of query: 843
length of database: 191,569,459
effective HSP length: 126
effective length of query: 717
effective length of database: 123,577,843
effective search space: 88605313431
effective search space used: 88605313431
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)