Query psy5651
Match_columns 843
No_of_seqs 410 out of 1683
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 23:11:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k44_A Purine-rich binding pro 100.0 4.2E-44 1.4E-48 345.6 9.9 138 309-446 5-145 (146)
2 3saf_A Exosome component 10; e 100.0 8.8E-36 3E-40 331.4 26.8 253 7-286 97-374 (428)
3 3k44_A Purine-rich binding pro 100.0 3.1E-37 1.1E-41 297.8 10.1 124 380-504 2-134 (146)
4 2hbj_A Exosome complex exonucl 100.0 6.5E-35 2.2E-39 322.6 26.4 242 18-286 86-358 (410)
5 1yt3_A Ribonuclease D, RNAse D 100.0 4.9E-34 1.7E-38 310.8 27.1 243 18-287 2-260 (375)
6 3cym_A Uncharacterized protein 100.0 1.4E-31 4.8E-36 298.4 22.6 255 5-287 5-280 (440)
7 2e6m_A Werner syndrome ATP-dep 99.9 1.2E-27 4.2E-32 239.0 16.2 185 16-220 14-207 (208)
8 1vk0_A Hypothetical protein; h 99.9 1.8E-25 6.1E-30 227.1 13.6 167 20-206 22-205 (206)
9 2kfn_A Klenow fragment of DNA 99.8 1E-18 3.5E-23 201.6 20.8 186 18-218 6-204 (605)
10 3pv8_A DNA polymerase I; DNA p 99.7 2.3E-17 8E-22 190.2 12.2 158 38-219 29-192 (592)
11 1x9m_A DNA polymerase; DNA plo 99.4 1.2E-13 4E-18 162.1 10.4 159 40-214 1-189 (698)
12 4dfk_A DNA polymerase I, therm 99.3 3.8E-12 1.3E-16 145.7 8.4 127 39-219 11-140 (540)
13 3v9w_A Ribonuclease T; DEDD nu 98.6 1.1E-07 3.7E-12 96.7 8.3 160 21-216 20-229 (235)
14 1bgx_T TAQ DNA polymerase; DNA 98.5 9.6E-08 3.3E-12 114.4 8.1 127 39-219 305-432 (832)
15 3n8b_A Uncharacterized protein 98.1 4.2E-06 1.4E-10 75.8 6.1 67 380-446 2-73 (98)
16 2p1j_A POLIII, DNA polymerase 97.4 0.00084 2.9E-08 65.9 10.7 139 36-212 10-180 (186)
17 2f96_A Ribonuclease T; RNAse, 97.2 0.0043 1.5E-07 62.5 14.2 85 93-213 126-218 (224)
18 3nm7_A Uncharacterized protein 96.6 0.003 1E-07 59.5 6.4 67 379-445 8-79 (127)
19 1wlj_A Interferon stimulated g 96.6 0.013 4.5E-07 57.6 11.5 145 38-218 5-179 (189)
20 2gui_A DNA polymerase III epsi 96.5 0.039 1.3E-06 54.0 14.2 90 82-207 86-184 (194)
21 3mxm_B Three prime repair exon 96.3 0.025 8.7E-07 58.1 12.1 97 82-209 105-216 (242)
22 1y97_A Three prime repair exon 96.0 0.049 1.7E-06 55.0 12.3 93 82-209 100-211 (238)
23 1w0h_A 3'-5' exonuclease ERI1; 95.2 0.18 6E-06 49.5 12.5 93 83-208 90-195 (204)
24 3u3y_B Three prime repair exon 95.2 0.15 5E-06 55.2 12.8 115 82-231 105-231 (314)
25 1zbh_A 3'-5' exonuclease ERI1; 93.5 0.69 2.3E-05 48.9 13.2 93 82-208 157-263 (299)
26 2qxf_A Exodeoxyribonuclease I; 92.7 0.87 3E-05 51.8 13.2 147 36-207 7-200 (482)
27 1wud_A ATP-dependent DNA helic 92.4 0.039 1.3E-06 48.9 1.4 49 236-287 10-59 (89)
28 3n8b_A Uncharacterized protein 92.4 0.053 1.8E-06 49.4 2.2 64 308-371 4-73 (98)
29 2rhf_A DNA helicase RECQ; HRDC 91.2 0.081 2.8E-06 45.4 2.0 45 239-286 5-50 (77)
30 2xri_A ERI1 exoribonuclease 3; 88.4 2.6 9E-05 42.3 10.8 89 82-206 108-212 (224)
31 2rrd_A BLM HRDC domain, HRDC d 87.8 0.24 8.1E-06 45.1 2.5 46 238-286 21-67 (101)
32 2kv2_A Bloom syndrome protein; 86.9 0.28 9.6E-06 42.9 2.3 46 238-286 6-52 (85)
33 3cg7_A CRN-4, cell death-relat 86.8 1.9 6.5E-05 45.9 9.1 95 83-207 100-208 (308)
34 2dgz_A Werner syndrome protein 85.5 0.35 1.2E-05 44.9 2.3 45 239-286 22-67 (113)
35 2e1f_A Werner syndrome ATP-dep 85.0 0.34 1.2E-05 44.3 1.9 45 239-286 15-60 (103)
36 1zbu_A ERI-1 homolog, 3'-5' ex 82.6 3.5 0.00012 44.8 8.9 93 82-208 207-313 (349)
37 4gmj_B CCR4-NOT transcription 78.7 19 0.00066 38.3 12.8 85 90-210 147-247 (285)
38 3ikm_A DNA polymerase subunit 78.4 3.3 0.00011 51.2 7.6 107 94-210 195-349 (1172)
39 3nm7_A Uncharacterized protein 69.1 2.3 7.9E-05 40.2 2.4 29 457-485 16-45 (127)
40 1qht_A Protein (DNA polymerase 68.5 43 0.0015 40.0 13.8 106 82-205 191-327 (775)
41 2py5_A DNA polymerase; protein 67.7 45 0.0015 38.6 13.3 139 38-204 6-180 (575)
42 1s5j_A DNA polymerase I; repli 54.5 1.1E+02 0.0036 37.2 13.8 143 39-202 191-387 (847)
43 2igi_A Oligoribonuclease; RNAs 51.0 39 0.0013 32.1 7.7 30 83-112 86-119 (180)
44 3tr8_A Oligoribonuclease; tran 48.9 31 0.0011 34.2 6.7 39 83-121 90-136 (186)
45 1noy_A Protein (DNA polymerase 38.8 40 0.0014 36.7 6.3 103 82-204 195-335 (388)
46 2a1r_A Poly(A)-specific ribonu 34.0 59 0.002 36.3 6.7 109 84-209 272-398 (430)
47 2gbz_A Oligoribonuclease; ORN, 31.2 1E+02 0.0035 29.9 7.2 20 190-209 163-182 (194)
48 3d45_A Poly(A)-specific ribonu 29.3 45 0.0016 37.9 4.9 109 84-209 267-393 (507)
49 1ylx_A Hypothetical protein AP 21.5 67 0.0023 29.4 3.4 85 352-441 10-101 (103)
No 1
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=4.2e-44 Score=345.56 Aligned_cols=138 Identities=39% Similarity=0.661 Sum_probs=132.4
Q ss_pred ccchhhHHhhhhhHhhhhccCCccceEEeeecCCccceeEEEecchHHHHHHHHHHHHHHhcC-CC--CCCCCCcccccc
Q psy5651 309 IDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNALLTAHQN-TP--RHRYRDTHTIKS 385 (843)
Q Consensus 309 L~Sk~L~~l~Kr~y~DlKeN~RGrFlkI~E~~~~g~rs~I~ls~~~~~efrd~L~~lie~y~~-~~--~~~~~~~~~l~S 385 (843)
|+|+.|..++|+||+|||||+|||||+|+|++.+|++++|+||+++++||+|+|++|+|+|++ ++ ++++|+++.|+|
T Consensus 5 L~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~~l~s 84 (146)
T 3k44_A 5 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDGKLKS 84 (146)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTCEEEE
T ss_pred ccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccccccc
Confidence 899999999999999999999999999999988899999999999999999999999999998 54 567888899999
Q ss_pred ceeeecccEEEEeccCCCcceEEEEEecccCCCCCceEEEcccCHHHHHHHHHHHHHHhCC
Q psy5651 386 EVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSC 446 (843)
Q Consensus 386 e~i~ve~KrFyfDlkeN~RGrFLRISE~~~r~~~Rs~I~IPa~g~~~Frd~L~~l~ee~~~ 446 (843)
+.+++|+|+||||||+|+|||||||||+.++|++|++|+||++||.+|||+|++|+++||+
T Consensus 85 ~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~ 145 (146)
T 3k44_A 85 EMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGA 145 (146)
T ss_dssp EEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred hheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999778899999999999999999999999999985
No 2
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=8.8e-36 Score=331.45 Aligned_cols=253 Identities=25% Similarity=0.358 Sum_probs=213.8
Q ss_pred CCcccccccCC-CcEEecCHHHHHHHHHHHhcCCeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHH
Q psy5651 7 PQNNLLRTLMN-RTNLITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGK 84 (843)
Q Consensus 7 ~~~~l~~~~~~-~~~lIdT~eeLaelLe~Lk~s~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~ 84 (843)
++|+++.+... .|.+|++.++|+++++.+..++.+|+|+|+.+. ++++.+|+||+|+.+ ++|+||+..++. ++..
T Consensus 97 ~~~~~~~p~~~~~y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~-~~~lidpl~l~~--~l~~ 173 (428)
T 3saf_A 97 PQPQLYRPIEETPCHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTRT-EDFIIDTLELRS--DMYI 173 (428)
T ss_dssp CCCCCCCCGGGSCEEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECSS-CEEEEETTTTGG--GGGG
T ss_pred CCCCCCCCCCCCCcEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeCC-cEEEEEeccchh--hHHH
Confidence 45666777665 689999999999999999999999999999988 899999999999865 799999988752 4678
Q ss_pred HHHhhcCCCceEEEecccccHHHHhhhcCCccCceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCcccc
Q psy5651 85 LHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFK 163 (843)
Q Consensus 85 LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~K 163 (843)
|+++|+|+++.||+||+++|+.+|++.+|+.+.++||||+|+|+|+++ .+||++|+++| |+.++ |
T Consensus 174 L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~------------~~gL~~Lv~~~Lg~~l~--K 239 (428)
T 3saf_A 174 LNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG------------RHSLDHLLKLYCNVDSN--K 239 (428)
T ss_dssp GHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS------------CCSHHHHHHHHHCCCCC--C
T ss_pred HHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC------------CCCHHHHHHHHcCCCCC--c
Confidence 999999999999999999999999889999999999999999999875 37999999999 99887 4
Q ss_pred ccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----HHHHHHHHHHh---hhc--------
Q psy5651 164 KNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQN-----RLLLDNLIYET---LFN-------- 227 (843)
Q Consensus 164 d~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~-----~~LfeEEc~e~---~y~-------- 227 (843)
+ ++.+||..|||+++|+.|||.||+++++||+.|.++|.+.|. ..++.++|+.. .|.
T Consensus 240 ~-------~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (428)
T 3saf_A 240 Q-------YQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDES 312 (428)
T ss_dssp T-------TTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTG
T ss_pred c-------ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 2 578999999999999999999999999999999999998886 33444444421 111
Q ss_pred --cc--C-CCCCChHhhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 228 --HV--V-PLNIRKRRQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 228 --~v--~-~~~L~~r~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
.+ + .+.+++++++++++|+.||++.|++ +.|+++|+. +..|+......|.+..+++
T Consensus 313 ~~~~~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~---d~~L~~iA~~~P~~~~~L~ 374 (428)
T 3saf_A 313 YLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLP---NHMMLKIAEELPKEPQGII 374 (428)
T ss_dssp GGHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCC---HHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEEC---HHHHHHHHHHCCCCHHHHH
Confidence 11 1 1467899999999999999999987 599999995 6688876556777766654
No 3
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-37 Score=297.81 Aligned_cols=124 Identities=19% Similarity=0.429 Sum_probs=111.8
Q ss_pred ccccccceeeecccEEEEeccCCCcceEEEEEecccCCCCCceEEEcccCHHHHHHHHHHHHHHhCCCC--CCCCCCCC-
Q psy5651 380 THTIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQDLGPIIGLISDLQQEHSCPE--DEDGAPEG- 456 (843)
Q Consensus 380 ~~~l~Se~i~ve~KrFyfDlkeN~RGrFLRISE~~~r~~~Rs~I~IPa~g~~~Frd~L~~l~ee~~~~~--~~~~lp~s- 456 (843)
+++|+|+.+++|+|+||||||||+|||||||||+ +++|+||+|+||++||.+|+|+|++++|+|+..+ +.+++|++
T Consensus 2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~-~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~ 80 (146)
T 3k44_A 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEI-GADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG 80 (146)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-CTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred cccccceeEEEeceEEEEEecccCCeEEEEEEEe-cCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence 4789999999999999999999999999999998 5678999999999999999999999999998643 23357765
Q ss_pred ----ceeeeeceEEEEEcCCCCceeEEEEeee--cCCCCceeEEeeccccccCC
Q psy5651 457 ----NYMRCNNKRFFFNVSKNGKGTFMRISEI--STPSKVLTNIGIKSNIKTDT 504 (843)
Q Consensus 457 ----~~~r~d~K~fyFD~g~N~rG~fLRISEv--~~~~r~~~~i~~~~~~~~~~ 504 (843)
+.+++|||+||||+|+|+||+||||||+ ++++|+.|+||.++|..+-+
T Consensus 81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~ 134 (146)
T 3k44_A 81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRD 134 (146)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEGGGHHHHHH
T ss_pred cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecHHHHHHHHH
Confidence 4689999999999999999999999999 68899999999999987643
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=100.00 E-value=6.5e-35 Score=322.56 Aligned_cols=242 Identities=21% Similarity=0.279 Sum_probs=209.0
Q ss_pred CcEEecCHHHHHHHHHHHhcCCeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHhhcCCCceE
Q psy5651 18 RTNLITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILK 96 (843)
Q Consensus 18 ~~~lIdT~eeLaelLe~Lk~s~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeLLEDpsIlK 96 (843)
.+.+|++.++++++++.+...+.+|+|+|+.+. ++++.+|++|+|+.+ .+|++|+..++ .++..|+++|+|+++.|
T Consensus 86 ~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~~-~~ylid~l~l~--~~l~~L~~lL~d~~i~K 162 (410)
T 2hbj_A 86 VPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRE-RDYLVDTLKLR--ENLHILNEVFTNPSIVK 162 (410)
T ss_dssp CCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECSS-CEEEEETTTTT--TTGGGGHHHHTCTTSEE
T ss_pred CcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEECC-cEEEEechhhh--hhHHHHHHHHcCCCceE
Confidence 578999999999999999888999999999988 789999999999855 79999976553 24678999999999999
Q ss_pred EEecccccHHHHhhhcCCccCceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCc
Q psy5651 97 VIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPH 175 (843)
Q Consensus 97 VgHdaK~DL~~L~r~~GI~L~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~S 175 (843)
|+||+++|+.+|++.+|+.+.++|||++|+|+|+++ .+||++|+++| |..++ |+ .+.+
T Consensus 163 V~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~------------~~~L~~L~~~~lg~~l~--K~-------~~~s 221 (410)
T 2hbj_A 163 VFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP------------RHSLAYLLENFANFKTS--KK-------YQLA 221 (410)
T ss_dssp EESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS------------CCSHHHHHHHHSCCCCC--CT-------TTTS
T ss_pred EEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC------------ccCHHHHHHHHcCCCCC--cc-------cccc
Confidence 999999999999888999999999999999999975 38999999999 98776 32 5688
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhh---------------------------hcc
Q psy5651 176 IWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLDNLIYETL---------------------------FNH 228 (843)
Q Consensus 176 DW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~LfeEEc~e~~---------------------------y~~ 228 (843)
||..|||+++|+.|||.||++|+.||+.|.++|.+.|+..|+.++|.... |.+
T Consensus 222 dW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (410)
T 2hbj_A 222 DWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKI 301 (410)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999988421 222
Q ss_pred cCC-CCCChHhhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 229 VVP-LNIRKRRQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 229 v~~-~~L~~r~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
+.+ +++++++++++++|++||++.|++ +.|+++|+. +..|+......|.+..++.
T Consensus 302 ~~~~~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~---D~~L~~iA~~~P~~~~~L~ 358 (410)
T 2hbj_A 302 LMYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMP---NQLLAALVAYTPTDVIGVV 358 (410)
T ss_dssp CSSCSCCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCC---HHHHHHHHHHCCCSHHHHH
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEEC---HHHHHHHHHhCCCCHHHHH
Confidence 222 457788999999999999999987 599999995 6688876555777666554
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=100.00 E-value=4.9e-34 Score=310.75 Aligned_cols=243 Identities=20% Similarity=0.209 Sum_probs=211.8
Q ss_pred CcEEecCHHHHHHHHHHHhcCCeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHhhcCCCceE
Q psy5651 18 RTNLITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILK 96 (843)
Q Consensus 18 ~~~lIdT~eeLaelLe~Lk~s~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeLLEDpsIlK 96 (843)
++.+|++.++++++++.+...+.+|+|+|+.+. +|++.+|++|+|+.+ .+|++|+..++ +++.|+++|+|+++.|
T Consensus 2 ~~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~~-~~~lid~~~l~---~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGE-HLALIDPLGIT---DWSPLKAILRDPSITK 77 (375)
T ss_dssp CCEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECSS-CEEEECGGGCS---CCHHHHHHHHCTTSEE
T ss_pred CeEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecCC-cEEEEeCCCCC---ChHHHHHHHcCCCceE
Confidence 367899999999999998888999999999998 888999999999754 79999975442 4678999999999999
Q ss_pred EEecccccHHHHhhhcCCccCceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCc
Q psy5651 97 VIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPH 175 (843)
Q Consensus 97 VgHdaK~DL~~L~r~~GI~L~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~S 175 (843)
|+||+++|+.+|++.+|+.+.++|||++|+|+|+++. ++||++|+++| |..++ |+ ++.+
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~~-----------~~~L~~L~~~~l~~~l~--K~-------~~~s 137 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM-----------SWGFASMVEEYSGVTLD--KS-------ESRT 137 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCT-----------TCCHHHHHHHHHCCCCC--CT-------TTTS
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCCC-----------ChhHHHHHHHHcCCCCC--CC-------cccC
Confidence 9999999999997779999999999999999999853 58999999999 98876 42 5679
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHH------------HhhhcccCC-CCCChHhhHHH
Q psy5651 176 IWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLDNLIY------------ETLFNHVVP-LNIRKRRQFRQ 242 (843)
Q Consensus 176 DW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~LfeEEc~------------e~~y~~v~~-~~L~~r~l~~L 242 (843)
||..|||+++|+.|||.||++++.||+.|.++|.+.|+.+|+.++|+ +..|.++++ +++.+++++++
T Consensus 138 dw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 217 (375)
T 1yt3_A 138 DWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACL 217 (375)
T ss_dssp CTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999778876 234666666 77899999999
Q ss_pred HHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhhh
Q psy5651 243 NQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLLN 287 (843)
Q Consensus 243 ~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i~ 287 (843)
++|+.||++.|++ +.|+++|+. +..|+......|.+..++..
T Consensus 218 ~~L~~wR~~~A~~~d~p~~~V~~---d~~L~~iA~~~P~~~~~l~~ 260 (375)
T 1yt3_A 218 QLLADWRLRKARERDLAVNFVVR---EEHLWSVARYMPGSLGELDS 260 (375)
T ss_dssp HHHHHHHHHHHHHHTCCGGGTSC---HHHHHHHHHHCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcceEEC---HHHHHHHHHHCCCCHHHHHh
Confidence 9999999999987 599999995 66888766667777666554
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.98 E-value=1.4e-31 Score=298.39 Aligned_cols=255 Identities=17% Similarity=0.193 Sum_probs=213.7
Q ss_pred cCCCcccccccCCCcEEecCHHHHHHHHHHHhcC-CeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCc-ccc
Q psy5651 5 CQPQNNLLRTLMNRTNLITDVQEAQSAMATILNE-SKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPL-IMF 81 (843)
Q Consensus 5 ~~~~~~l~~~~~~~~~lIdT~eeLaelLe~Lk~s-~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~-~~d 81 (843)
-.|.| ++.|....+.+|++.++++++++.+... +.+|+|+|+.+. +|++.+|++|+|+.++.+|+||+..+.. ..+
T Consensus 5 ~~~~~-l~~p~~~~~~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~ 83 (440)
T 3cym_A 5 DEPKL-LAEPREGVPNVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGAD 83 (440)
T ss_dssp -CCEE-CCSCTTCCCCEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCC
T ss_pred CCCCC-CCCCCCCCCEeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccC
Confidence 34666 7888888888999999999999998877 889999999988 8899999999998776789998843110 013
Q ss_pred hHHHHHhhcCCCceEEEecccccHHHHhhhcCCccCceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCc
Q psy5651 82 DGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPN 160 (843)
Q Consensus 82 Ls~LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld 160 (843)
++.|+++|+|+ .||+|++++|+.+|+ .+|+.+.++|||++|+|+|+++ ++||++|++.| |..++
T Consensus 84 l~~L~~lL~d~--~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~------------~~gL~~L~~~~lg~~~~ 148 (440)
T 3cym_A 84 WNDFNRAVGDA--VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLK------------RFGLAAVTEHFLGLTLA 148 (440)
T ss_dssp HHHHHHHHTTC--EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCS------------SCSHHHHHHHHHCEECC
T ss_pred HHHHHHHHCCC--CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCC------------CCCHHHHHHHHhCCCcc
Confidence 67899999997 699999999999995 8999999999999999999873 38999999999 97766
Q ss_pred cccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHh-------------hhc
Q psy5651 161 NFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLDNLIYET-------------LFN 227 (843)
Q Consensus 161 ~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~LfeEEc~e~-------------~y~ 227 (843)
|. .+.++|..|||+++|+.|||.||++|+.||+.|..+|.+.|+..|+.++|... .|.
T Consensus 149 --K~-------~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~ 219 (440)
T 3cym_A 149 --KE-------HSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWM 219 (440)
T ss_dssp --CC-------CTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGG
T ss_pred --cc-------cccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHH
Confidence 32 56889999999999999999999999999999999999999999999988732 223
Q ss_pred ccCC-CCC--ChHhhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhhh
Q psy5651 228 HVVP-LNI--RKRRQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLLN 287 (843)
Q Consensus 228 ~v~~-~~L--~~r~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i~ 287 (843)
++.+ +++ .+++++++++|+.||++.|++ +.|+++|+. +..|+......|.+..++..
T Consensus 220 ~~~~~~~l~~~~~~l~~~~~L~~wR~~~Ar~~d~p~~~V~~---d~~L~~iA~~~P~~~~~l~~ 280 (440)
T 3cym_A 220 HVSHITEVMRDRQALAIVRALWTRRDELAREYDIAPTLLLS---DSSIIEVAKRKPHNAAQFRS 280 (440)
T ss_dssp CCTTGGGGTTCHHHHHHHHHHHHHHHHHHHHTTSCHHHHSC---HHHHHHHHHHCCCSHHHHHT
T ss_pred HhccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEEC---HHHHHHHHHHCCCCHHHHHh
Confidence 3333 456 788999999999999999987 599999995 66888866667777666554
No 7
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=1.2e-27 Score=239.00 Aligned_cols=185 Identities=24% Similarity=0.324 Sum_probs=149.2
Q ss_pred CCCcEEecCHHHHH----HHHHHHhcCCeEEEEeeeeCC---CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHh
Q psy5651 16 MNRTNLITDVQEAQ----SAMATILNESKVGLDLEGMDL---GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEV 88 (843)
Q Consensus 16 ~~~~~lIdT~eeLa----elLe~Lk~s~~IALDtE~~~~---ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeL 88 (843)
.+.+.+|++++++. ++++.+...+.+|+|+|+.+. ++.+.++++|+|+.++.+|+||+..++. .++.|+++
T Consensus 14 ~g~i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~--~~~~L~~l 91 (208)
T 2e6m_A 14 PGSIVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSV--FPQGLKML 91 (208)
T ss_dssp CSEEEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSS--CCHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECccccc--chHHHHHH
Confidence 34688999999998 556677777889999999876 5578999999998656899998876532 45789999
Q ss_pred hcCCCceEEEecccccHHHHhhhcCCccCceec-hHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccc
Q psy5651 89 LESDRILKVIHGAFGDAGGLLSNFNIRLKNVYD-TQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNI 166 (843)
Q Consensus 89 LEDpsIlKVgHdaK~DL~~L~r~~GI~L~nVFD-TQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~v 166 (843)
|+|+.+.||+||+++|+.+|.+.+|+.+.++|| |++|+|+|++.. ++||++|+++| |..+. |+
T Consensus 92 L~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~~-----------~~~L~~L~~~~l~~~~~--K~-- 156 (208)
T 2e6m_A 92 LENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCAE-----------TWSLNGLVKHVLGKQLL--KD-- 156 (208)
T ss_dssp HTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCCC-----------CCCHHHHHHHHHSCBCC--CC--
T ss_pred hcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCCC-----------ChhHHHHHHHHcCCCcC--CC--
Confidence 999999999999999999997779999999999 999999999742 58999999999 87764 32
Q ss_pred cccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHH
Q psy5651 167 QNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLDNL 220 (843)
Q Consensus 167 K~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~LfeEE 220 (843)
+ +.+.+||..|||+++|+.|||.||+++++||+.|.++|.+.|+..|..||
T Consensus 157 k---~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~~~~~~~ 207 (208)
T 2e6m_A 157 K---SIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAE 207 (208)
T ss_dssp H---HHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred C---CeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 1 14679999999999999999999999999999999999999999988765
No 8
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.92 E-value=1.8e-25 Score=227.13 Aligned_cols=167 Identities=14% Similarity=0.025 Sum_probs=136.3
Q ss_pred EEecCHHHHHHHHHHH------hcCCeEEEEeeeeCC-------CcCc--eEEEEEEEEeCCeEEEEeCCCCCcccchHH
Q psy5651 20 NLITDVQEAQSAMATI------LNESKVGLDLEGMDL-------GVDG--KVSLVSLALQNGKIFIFDVYSCPLIMFDGK 84 (843)
Q Consensus 20 ~lIdT~eeLaelLe~L------k~s~~IALDtE~~~~-------ty~g--kL~LIQIAT~dgqvyLID~laL~~~~dLs~ 84 (843)
.+|.+.+++..+++.+ .....+|+|+||.+. ++++ ++||||+|+.+ ++++||+. ......+.+
T Consensus 22 ~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~-~~~l~~l~-~~~~~~L~~ 99 (206)
T 1vk0_A 22 IDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRN-LCLFLRLP-KPFHDNLKD 99 (206)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSS-EEEEEECC-SSCCGGGHH
T ss_pred EEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCC-CeEEEecc-ccCCccHHH
Confidence 4566777777777766 556789999999852 3554 89999999765 79999982 111124556
Q ss_pred HHHhhcCCCceEEEecccccHHHHhhhcCCccCceechH-HHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccc
Q psy5651 85 LHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQ-CAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNF 162 (843)
Q Consensus 85 LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L~nVFDTQ-LAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~ 162 (843)
|.++|+||+|+||||++++|+..|++.+|+.+.++|||+ +|+.+++.+. ..++||+.|++++ |+++ +-
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~---------~~~~gL~~Lv~~~lg~~l-K~ 169 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLV---------LEFLGTRELAHRVLWSDL-GQ 169 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGG---------GGGCCHHHHHHHHHCCCC-HH
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCC---------CCCccHHHHHHHHhCCcC-CC
Confidence 899999999999999999999999999999999999997 7888887521 1258999999999 9888 21
Q ss_pred cccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 163 KKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTK 206 (843)
Q Consensus 163 Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~ 206 (843)
|+ .++|||.. |||++|+.|||.||++++.||+.|.+
T Consensus 170 k~-------~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 170 LD-------SIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HH-------HHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-------cccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22 57899999 99999999999999999999999864
No 9
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.80 E-value=1e-18 Score=201.60 Aligned_cols=186 Identities=20% Similarity=0.200 Sum_probs=152.8
Q ss_pred CcEEecCHHHHHHHHHHHhcCCeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCC--------CCcccchHHHHHh
Q psy5651 18 RTNLITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYS--------CPLIMFDGKLHEV 88 (843)
Q Consensus 18 ~~~lIdT~eeLaelLe~Lk~s~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~la--------L~~~~dLs~LkeL 88 (843)
.|.+|++.++++++++.+...+.+++|+|+.+. ++.++++++|+++.+++.+++++.. ++....++.|.++
T Consensus 6 ~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~~ 85 (605)
T 2kfn_A 6 NYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPL 85 (605)
T ss_dssp SSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHHH
T ss_pred heEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHHH
Confidence 467888999999999998888889999999998 7789999999997667788885432 1111234679999
Q ss_pred hcCCCceEEEecccccHHHHhhhcCCccCc-eechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCcccccc-
Q psy5651 89 LESDRILKVIHGAFGDAGGLLSNFNIRLKN-VYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKN- 165 (843)
Q Consensus 89 LEDpsIlKVgHdaK~DL~~L~r~~GI~L~n-VFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~- 165 (843)
|+|+++.||+||+++|+.+|. .+|+.+.+ +|||++|+|+|+|+. .+++|++|+++| |.....+++.
T Consensus 86 L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~----------~~~~L~~La~~~Lg~~~i~~~~~~ 154 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVA----------GRHDMDSLAERWLKHKTITFEEIA 154 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTS----------SCCSHHHHHHHHSCCCCCCHHHHH
T ss_pred HcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCC----------CCCCHHHHHHHhcCCCcccHHHHh
Confidence 999999999999999999994 58999887 899999999999864 258999999999 8765433221
Q ss_pred ccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcHHHHH
Q psy5651 166 IQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYAL-KQNRLLLD 218 (843)
Q Consensus 166 vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee-~G~~~Lfe 218 (843)
.++ .+.++|..+|| +++..||+.||.++++||+.|.++|.+ .|...+|.
T Consensus 155 gKg---~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~ 204 (605)
T 2kfn_A 155 GKG---KNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFE 204 (605)
T ss_dssp CSS---TTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCC---cccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 122 34568999998 789999999999999999999999998 77777664
No 10
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.71 E-value=2.3e-17 Score=190.24 Aligned_cols=158 Identities=13% Similarity=0.028 Sum_probs=132.0
Q ss_pred CCeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHhhcCCCceEEEecccccHHHHhhhcCCcc
Q psy5651 38 ESKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRL 116 (843)
Q Consensus 38 s~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L 116 (843)
....++|+|+.+. ++.+.+|++|+++.+ ++|+||+.. ...++.|+++|+|+++.||+||+++|+.+| ..+|+.+
T Consensus 29 ~~~~aldtE~~~~~~~~a~Lvgisla~~~-~a~yIp~~~---~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL-~~~Gi~l 103 (592)
T 3pv8_A 29 ADKAALVVEVVEENYHDAPIVGIAVVNEH-GRFFLRPET---ALADPQFVAWLGDETKKKSMFDSKRAAVAL-KWKGIEL 103 (592)
T ss_dssp CSEEEEEEECCSSSCTTCCCCEEEEEETT-EEEEECHHH---HTTCHHHHHHHTCTTSEEEESSHHHHHHHH-HHTTCCC
T ss_pred ccCcEEEEEEcCCccCcccEEEEEEEcCC-ceEEEccch---hhHHHHHHHHHhCCCCeEEEechHHHHHHH-HHcCCCC
Confidence 3567999999988 889999999999765 689987642 124678999999999999999999999999 5689998
Q ss_pred Cc-eechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCccC---CCCCCCHHHHHHHH
Q psy5651 117 KN-VYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPHIW---KTRPLTSDMLLYAA 191 (843)
Q Consensus 117 ~n-VFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~SDW---~~RPLSeeQL~YAA 191 (843)
.+ +|||++|+|||+|+. ++++|++|+++| |..++..++ ..+| ..+|.++.+..||+
T Consensus 104 ~g~~fDTmLAAYLL~p~~----------~~~~L~~La~~yLg~~l~~~ee---------~~gkg~~~~~~~~e~~~~YAa 164 (592)
T 3pv8_A 104 CGVSFDLLLAAYLLDPAQ----------GVDDVAAAAKMKQYEAVRPDEA---------VYGKGAKRAVPDEPVLAEHLV 164 (592)
T ss_dssp CCEEEEHHHHHHHHCGGG----------CCCSHHHHHGGGTCCSSCCHHH---------HHCSGGGCCCCCHHHHHHHHH
T ss_pred CCccchHHHHHHHcCCCC----------CCCCHHHHHHHHcCCCCchHHH---------hcCccccccCccHHHHHHHHH
Confidence 76 899999999999864 259999999999 888764332 1223 23566688999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcHHHHHH
Q psy5651 192 ADVESLLALFHRMTKEYALKQNRLLLDN 219 (843)
Q Consensus 192 ~DA~~LL~Lyd~L~~rLee~G~~~LfeE 219 (843)
.||.++++||+.|.++|.+.++..+|.+
T Consensus 165 ~DA~~l~~L~~~L~~~L~e~~l~~l~~~ 192 (592)
T 3pv8_A 165 RKAAAIWELERPFLDELRRNEQDRLLVE 192 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 9999999999999999999999888755
No 11
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.45 E-value=1.2e-13 Score=162.09 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=122.1
Q ss_pred eEEEEeeeeCC-CcCceEEEEEEEEe-CCeEEEEeCCCCCcccchHHHHHhhcCCCceEEEecc-cccHHHHhhhc----
Q psy5651 40 KVGLDLEGMDL-GVDGKVSLVSLALQ-NGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGA-FGDAGGLLSNF---- 112 (843)
Q Consensus 40 ~IALDtE~~~~-ty~gkL~LIQIAT~-dgqvyLID~laL~~~~dLs~LkeLLEDpsIlKVgHda-K~DL~~L~r~~---- 112 (843)
.+++|+|+.++ .+.+++|++|++.. .++.+++|+..++ ..++.|.++|+ +++.||+||+ ++|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~--~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~ 77 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFG--AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQL 77 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHH--HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHH--HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcc
Confidence 37999999999 77889999999963 2478889876432 24788999999 9999999999 99999997654
Q ss_pred --CCccC-c-eechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccc-----------cccc------cccc
Q psy5651 113 --NIRLK-N-VYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNF-----------KKNI------QNLY 170 (843)
Q Consensus 113 --GI~L~-n-VFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~-----------Kd~v------K~~~ 170 (843)
|+.+. + +|||++|+|+|+++. .+++|++|+++| +..++.. ++.+ ++ .
T Consensus 78 ~~Gi~l~~~~~~DTmlaayLL~p~~----------~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg-~ 146 (698)
T 1x9m_A 78 NREFHLPRENCIDTLVLSRLIHSNL----------KDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQG-E 146 (698)
T ss_dssp CCCCCCCGGGEEEHHHHHHHHTTTS----------CCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred cCCccCCCCcchhHHHHHHHhCCCC----------CCCCHHHHHHHHcccchhhhcccccccccCHHHHhCccccccc-c
Confidence 98877 4 999999999999864 258888888887 4333211 0000 11 0
Q ss_pred cCCC-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcH
Q psy5651 171 RENP-HIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNR 214 (843)
Q Consensus 171 keq~-SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~ 214 (843)
..+. .+|.. +++++.+||+.||.+++.||+.|.++|.+.+..
T Consensus 147 ~~~~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~ 189 (698)
T 1x9m_A 147 EYVDGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPE 189 (698)
T ss_dssp CCCTTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTT
T ss_pred cccccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 0111 38875 668999999999999999999999999877763
No 12
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.27 E-value=3.8e-12 Score=145.66 Aligned_cols=127 Identities=11% Similarity=-0.095 Sum_probs=106.9
Q ss_pred CeEEEEeeeeCC-CcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHhhcCCCceEEEecccccHHHHhhhcCCccC
Q psy5651 39 SKVGLDLEGMDL-GVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLK 117 (843)
Q Consensus 39 ~~IALDtE~~~~-ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L~ 117 (843)
+.+|+|+|+.+. ++.+.+|++|++. ++++|++| ..+..|.++|+| +.||+||+++|+. .+|+.+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a~~i~-------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~ 76 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRVHRAP-------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLP 76 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEEEECS-------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEEEEeh-------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCC
Confidence 459999999998 8899999999996 45888876 146789999999 7899999999999 4788877
Q ss_pred ceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHH
Q psy5651 118 NVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVES 196 (843)
Q Consensus 118 nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~ 196 (843)
.+|||++|+|+|+|+ +++|++|+++| +. +. .+|+.||.+
T Consensus 77 ~~fDT~laAyLL~p~------------~~~L~~La~~yl~~-~g---------------------------k~a~~DA~~ 116 (540)
T 4dfk_A 77 PGDDPMLLAYLLDPS------------NTTPEGVARRYGGE-WT---------------------------EEAGERAAL 116 (540)
T ss_dssp BCCCHHHHHHHHCTT------------CCCHHHHHHHHTSC-CC---------------------------SCHHHHHHH
T ss_pred cceeHHHHHHHhCCC------------CCCHHHHHHHHhhh-hc---------------------------cchHHHHHH
Confidence 889999999999985 28999999999 53 11 026689999
Q ss_pred HHHHHHHHHHHH-HhhhcHHHHHH
Q psy5651 197 LLALFHRMTKEY-ALKQNRLLLDN 219 (843)
Q Consensus 197 LL~Lyd~L~~rL-ee~G~~~LfeE 219 (843)
+++||+.|.++| .+.+...+|.+
T Consensus 117 t~~L~~~L~~~L~~~~~~~~~~~~ 140 (540)
T 4dfk_A 117 SERLFANLWGRLEGEERLLWLYRE 140 (540)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999999 66777777755
No 13
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.55 E-value=1.1e-07 Score=96.68 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=104.1
Q ss_pred EecCHHHHHHHHHHHhcCCeEEEEeeeeCC-CcCceEEEEEEEE-e---CCeE-------EEEeCCC---C---------
Q psy5651 21 LITDVQEAQSAMATILNESKVGLDLEGMDL-GVDGKVSLVSLAL-Q---NGKI-------FIFDVYS---C--------- 76 (843)
Q Consensus 21 lIdT~eeLaelLe~Lk~s~~IALDtE~~~~-ty~gkL~LIQIAT-~---dgqv-------yLID~la---L--------- 76 (843)
-+++.+.+..+...+.....+++|+|+.+. +..++++-+.+.. . ++.. .+|.+.. +
T Consensus 20 ~~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~G 99 (235)
T 3v9w_A 20 HMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNG 99 (235)
T ss_dssp ---------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHC
T ss_pred cccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhC
Confidence 366777788888888888899999999988 5556554444332 1 2322 2344410 0
Q ss_pred -Ccc----------cchHHHHHhhcC-------CCceEEEecccccHHHHhhh---cCCcc-----CceechHHHHHHcC
Q psy5651 77 -PLI----------MFDGKLHEVLES-------DRILKVIHGAFGDAGGLLSN---FNIRL-----KNVYDTQCAFTALQ 130 (843)
Q Consensus 77 -~~~----------~dLs~LkeLLED-------psIlKVgHdaK~DL~~L~r~---~GI~L-----~nVFDTQLAAyLLg 130 (843)
... ..+..|.+++.+ +....|+||+++|+.+|.+. +|+.. ..++||+.+++.+.
T Consensus 100 It~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~ 179 (235)
T 3v9w_A 100 IDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLAL 179 (235)
T ss_dssp CCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHh
Confidence 000 124455666653 46788999999999998643 48743 23899999999886
Q ss_pred CCCCCcccCCCCCCCCCHHHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5651 131 LSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYAL 210 (843)
Q Consensus 131 p~~sG~~lp~~~~~s~SLa~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee 210 (843)
+ .++|+.|+++||++.+. . ...+|..||.++.+|+..|.+++.+
T Consensus 180 p-------------~~~L~~l~~~~gi~~~~----------~-------------~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 180 G-------------QTVLSKACQTAGMDFDS----------T-------------QAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp S-------------CCSHHHHHHHHTCCCCT----------T-------------TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-------------CCCHHHHHHHcCCCCCC----------C-------------CCcChHHHHHHHHHHHHHHHHHHHh
Confidence 4 26899999999865430 0 1245899999999999999999988
Q ss_pred hhcHHH
Q psy5651 211 KQNRLL 216 (843)
Q Consensus 211 ~G~~~L 216 (843)
.|.+.+
T Consensus 224 ~~~~~l 229 (235)
T 3v9w_A 224 LGGWPL 229 (235)
T ss_dssp TTCSSC
T ss_pred cCCccc
Confidence 776654
No 14
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=98.52 E-value=9.6e-08 Score=114.43 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=99.1
Q ss_pred CeEEEEeeeeCCCcCceEEEEEEEEeCCeEEEEeCCCCCcccchHHHHHhhcCCCceEEEecccccHHHHhhhcCCccCc
Q psy5651 39 SKVGLDLEGMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKN 118 (843)
Q Consensus 39 ~~IALDtE~~~~ty~gkL~LIQIAT~dgqvyLID~laL~~~~dLs~LkeLLEDpsIlKVgHdaK~DL~~L~r~~GI~L~n 118 (843)
+.+++|+|..+ +..+.+| +++|..++.++++++ . . +.|+++|+|+.+ |+++|+.+| ..+|+.+..
T Consensus 305 ~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~-----~-~~Lk~lLed~~i-----n~K~d~~~L-~~~Gi~~~~ 369 (832)
T 1bgx_T 305 AFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P-----Y-KALRDLKEARGL-----LAKDLSVLA-LREGLGLPP 369 (832)
T ss_dssp CCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H-----H-HHHHHCSSBCBT-----THHHHHHHH-HHHTCCCCB
T ss_pred ceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C-----H-HHHHHHHhCCCC-----ChHHHHHHH-HHcCCccCc
Confidence 45899998766 4456664 557766678888755 2 1 569999999986 999999999 459999887
Q ss_pred eechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHH
Q psy5651 119 VYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLL 198 (843)
Q Consensus 119 VFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL 198 (843)
+|||++|+|||+|. +++|++|+++||. +|. + + || .||.+++
T Consensus 370 ~~Dt~laayLl~p~------------~~~l~~l~~~~gk------------------~~~-----~-~--ya-~da~~~~ 410 (832)
T 1bgx_T 370 GDDPMLLAYLLDPS------------NTTPEGVARRYGG------------------EWT-----E-E--AG-ERAALSE 410 (832)
T ss_dssp CCCHHHHHHHHCTT------------CCSTTHHHHHHSC------------------CCC-----S-S--HH-HHHHHHH
T ss_pred ccCHHHHHHHcCCC------------CCCHHHHHHHhCC------------------Cch-----H-H--HH-HHHHHHH
Confidence 79999999999984 2789999998841 121 1 1 88 6999999
Q ss_pred HHHHHHHHHHH-hhhcHHHHHH
Q psy5651 199 ALFHRMTKEYA-LKQNRLLLDN 219 (843)
Q Consensus 199 ~Lyd~L~~rLe-e~G~~~LfeE 219 (843)
+||+.|.++|. +.+...+|.+
T Consensus 411 ~l~~~l~~~L~~~~~~~~l~~~ 432 (832)
T 1bgx_T 411 RLFANLWGRLEGEERLLWLYRE 432 (832)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHHH
Confidence 99999999998 7777777643
No 15
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.07 E-value=4.2e-06 Score=75.76 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=56.7
Q ss_pred ccccccceeeec-ccEEEEeccCCCcce-EEEEEecc--cCCC-CCceEEEcccCHHHHHHHHHHHHHHhCC
Q psy5651 380 THTIKSEVLIKD-TRRYFLDLKDNGRAR-FVTISQLL--PVGG-KLSSIAFPAQDLGPIIGLISDLQQEHSC 446 (843)
Q Consensus 380 ~~~l~Se~i~ve-~KrFyfDlkeN~RGr-FLRISE~~--~r~~-~Rs~I~IPa~g~~~Frd~L~~l~ee~~~ 446 (843)
.++|.|+.+... +|.|||||++|..|. ||.|+|.. ..|+ .|.+|.|+.+.+..|.++|.+.++....
T Consensus 2 RgEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~ 73 (98)
T 3n8b_A 2 RGEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQ 73 (98)
T ss_dssp TTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHH
Confidence 367899877665 777999999999998 99999985 2234 5999999999999999999999887653
No 16
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.37 E-value=0.00084 Score=65.90 Aligned_cols=139 Identities=17% Similarity=0.081 Sum_probs=85.7
Q ss_pred hcCCeEEEEeeeeCC-CcCceEEEEEEE-EeCCeE-----EEEeCCC-CCc-------------------ccchHHHHHh
Q psy5651 36 LNESKVGLDLEGMDL-GVDGKVSLVSLA-LQNGKI-----FIFDVYS-CPL-------------------IMFDGKLHEV 88 (843)
Q Consensus 36 k~s~~IALDtE~~~~-ty~gkL~LIQIA-T~dgqv-----yLID~la-L~~-------------------~~dLs~LkeL 88 (843)
.....+++|+|+.+. +..+.++-+... ..+++. .+|.+.. ++. ...+..|.++
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 445789999999987 555554433322 134432 2444321 110 0123456666
Q ss_pred hcCCCceEEEecccccHHHHhh---hcCCcc--CceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHhCCCCcccc
Q psy5651 89 LESDRILKVIHGAFGDAGGLLS---NFNIRL--KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFK 163 (843)
Q Consensus 89 LEDpsIlKVgHdaK~DL~~L~r---~~GI~L--~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~LveryGv~Ld~~K 163 (843)
+.+ ...|+||+.+|+.+|.+ .+|+.+ ..++||+..+..+. +. .+++|.+|++.||++..
T Consensus 90 l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~----------~~~~L~~l~~~~gi~~~--- 153 (186)
T 2p1j_A 90 LED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KL----------RSYSLDSVVEKLGLGPF--- 153 (186)
T ss_dssp SSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CC----------SCCSHHHHHHHTTCCST---
T ss_pred HCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hc----------CCCCHHHHHHHcCCCCC---
Confidence 764 35799999999998864 356654 24899998777664 21 25899999998876432
Q ss_pred ccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5651 164 KNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQ 212 (843)
Q Consensus 164 d~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G 212 (843)
+ ...|..||.++..|+..+..+..+.|
T Consensus 154 ---------~-------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 154 ---------R-------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ---------T-------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ---------C-------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0 13588999999999998876655443
No 17
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.22 E-value=0.0043 Score=62.52 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=61.9
Q ss_pred CceEEEecccccHHHHhh---hcCCc--c---CceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHHHhCCCCccccc
Q psy5651 93 RILKVIHGAFGDAGGLLS---NFNIR--L---KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNNFKK 164 (843)
Q Consensus 93 sIlKVgHdaK~DL~~L~r---~~GI~--L---~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~LveryGv~Ld~~Kd 164 (843)
..+.|+||+.+|+.+|.+ .+|+. + ...+||+..+..+.+ +++|..|++.||++...
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~-------------~~~L~~l~~~~gi~~~~--- 189 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG-------------QTVLAKACQAAGMEFDN--- 189 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS-------------CCSHHHHHHHTTCCCCT---
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC-------------CCCHHHHHHHcCCCcCC---
Confidence 456799999999998864 35765 2 248999887766532 26899999988865430
Q ss_pred cccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5651 165 NIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQN 213 (843)
Q Consensus 165 ~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~ 213 (843)
.+. +-|..||.++..|+..+.+++.+.|.
T Consensus 190 -------~~~-------------H~Al~Da~~ta~l~~~l~~~~~~~~~ 218 (224)
T 2f96_A 190 -------REA-------------HSARYDTEKTAELFCGIVNRWKEMGG 218 (224)
T ss_dssp -------TSC-------------CCHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -------CCC-------------CChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 011 22889999999999999998886554
No 18
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.61 E-value=0.003 Score=59.45 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=55.0
Q ss_pred Cccccccceeee-cccEEEEeccCCCcc-eEEEEEeccc--CCC-CCceEEEcccCHHHHHHHHHHHHHHhC
Q psy5651 379 DTHTIKSEVLIK-DTRRYFLDLKDNGRA-RFVTISQLLP--VGG-KLSSIAFPAQDLGPIIGLISDLQQEHS 445 (843)
Q Consensus 379 ~~~~l~Se~i~v-e~KrFyfDlkeN~RG-rFLRISE~~~--r~~-~Rs~I~IPa~g~~~Frd~L~~l~ee~~ 445 (843)
+.++|.|..+.. ..+.|||||++|..| .||-|+|... .|+ .|..|.|=.+-+..|.++|.+.++...
T Consensus 8 ~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~ 79 (127)
T 3nm7_A 8 ERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIK 79 (127)
T ss_dssp CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHH
Confidence 357889988865 577899999999997 6899999852 123 589999999999999999999877654
No 19
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.61 E-value=0.013 Score=57.61 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCeEEEEeeeeCC-CcCceEEEEEEEE--eCCeEE---EEeCCC-CC----------c---------ccchHHHHHhhcC
Q psy5651 38 ESKVGLDLEGMDL-GVDGKVSLVSLAL--QNGKIF---IFDVYS-CP----------L---------IMFDGKLHEVLES 91 (843)
Q Consensus 38 s~~IALDtE~~~~-ty~gkL~LIQIAT--~dgqvy---LID~la-L~----------~---------~~dLs~LkeLLED 91 (843)
...+++|+|+.+. +..+ -.+++++. .++... +|.|.. ++ . ......|.+++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~-~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~ 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTE-EEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT
T ss_pred CeEEEEEeECcCcCCCCC-ceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC
Confidence 4679999999887 3332 22334443 233332 444431 10 0 0123456677764
Q ss_pred CCceEEEecccccHHHHhhhcCCccCceechHHHHHHc---CCCCCCcccCCCCCCCCCHHHHHHHh-CCCCcccccccc
Q psy5651 92 DRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTAL---QLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQ 167 (843)
Q Consensus 92 psIlKVgHdaK~DL~~L~r~~GI~L~nVFDTQLAAyLL---gp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK 167 (843)
...|+||+.+|+.+|...+ ....++||+....+. ..+. ..+++|++|+++| |++.. .+
T Consensus 84 --~~lV~hn~~fD~~~L~~~~--~~~~~idt~~~~~~~~~~~~p~---------~~~~~L~~l~~~~lgi~~~--~~--- 145 (189)
T 1wlj_A 84 --KLVVGHDLKHDFQALKEDM--SGYTIYDTSTDRLLWREAKLDH---------CRRVSLRVLSERLLHKSIQ--NS--- 145 (189)
T ss_dssp --SEEEESSHHHHHHHTTCCC--TTCEEEEGGGCHHHHHHHTC--------------CCHHHHHHHHTCCCCS--CC---
T ss_pred --CEEEECCcHHHHHHHHHhC--CCCceechHhhhhhhhcccCCC---------CCCccHHHHHHHHcCCCCC--CC---
Confidence 4679999999999995432 222489998643221 1111 0258999999994 87653 10
Q ss_pred ccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHH
Q psy5651 168 NLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLD 218 (843)
Q Consensus 168 ~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~Lfe 218 (843)
.+. .-|..||.++..|+..+.+++.+.+...|..
T Consensus 146 ----~~~-------------H~Al~Da~ata~l~~~l~~~~~~~~~~~~~~ 179 (189)
T 1wlj_A 146 ----LLG-------------HSSVEDARATMELYQISQRIRARRGLPRLAV 179 (189)
T ss_dssp ----TTC-------------CCHHHHHHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred ----CCC-------------cCcHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 001 2278999999999999988887665554433
No 20
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.52 E-value=0.039 Score=54.00 Aligned_cols=90 Identities=19% Similarity=0.132 Sum_probs=61.6
Q ss_pred hHHHHHhhcCCCceEEEecccccHHHHhh---hcCCc---c---CceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHH
Q psy5651 82 DGKLHEVLESDRILKVIHGAFGDAGGLLS---NFNIR---L---KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLL 152 (843)
Q Consensus 82 Ls~LkeLLEDpsIlKVgHdaK~DL~~L~r---~~GI~---L---~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lv 152 (843)
+..|.+++.+. .-|+||+.+|+.+|.+ .+|+. + ..++||+..+..+.++. +++|.+|+
T Consensus 86 ~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~-----------~~~L~~l~ 152 (194)
T 2gui_A 86 ADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK-----------RNSLDALC 152 (194)
T ss_dssp HHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS-----------CCSHHHHH
T ss_pred HHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC-----------CCCHHHHH
Confidence 34566677653 4689999999998864 35666 2 25899987776665532 47999999
Q ss_pred HHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 153 KFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207 (843)
Q Consensus 153 eryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~r 207 (843)
+.||++... ... +-|..||.++..|+..|..+
T Consensus 153 ~~~gi~~~~----------~~~-------------H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 153 ARYEIDNSK----------RTL-------------HGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp HHTTCCCTT----------CSS-------------CCHHHHHHHHHHHHHHHTC-
T ss_pred HHcCcCCCC----------CCC-------------CChHHHHHHHHHHHHHHHhc
Confidence 988765430 001 12789999999999877543
No 21
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.33 E-value=0.025 Score=58.15 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=64.1
Q ss_pred hHHHHHhhcC--CCceEEEecc-cccHHHHhh---hcCCcc--C--ceechHHHHHHcC----CCCCCcccCCCCCCCCC
Q psy5651 82 DGKLHEVLES--DRILKVIHGA-FGDAGGLLS---NFNIRL--K--NVYDTQCAFTALQ----LSDPRLLSQDLVPHTIG 147 (843)
Q Consensus 82 Ls~LkeLLED--psIlKVgHda-K~DL~~L~r---~~GI~L--~--nVFDTQLAAyLLg----p~~sG~~lp~~~~~s~S 147 (843)
+..|.+++.+ +...-|+||+ .+|+.+|.+ .+|+.. . .++||+..++.+. ++.. ....+++
T Consensus 105 ~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~------~~~~~~~ 178 (242)
T 3mxm_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGN------GSRKSYS 178 (242)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------------CCCS
T ss_pred HHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCcccc------CCCCCcC
Confidence 4556667766 2246799996 999998864 457653 2 3789998877543 1100 0013689
Q ss_pred HHHHHHH-hCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 148 LNDLLKF-YKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYA 209 (843)
Q Consensus 148 La~Lver-yGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLe 209 (843)
|++|+++ ||++... . +-|..||.++.+|+..+..++.
T Consensus 179 L~~l~~~~~gi~~~~------------~-------------H~Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 179 LGSIYTRLYWQAPTD------------S-------------HTAEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHHHHHHHHSSCCSS------------T-------------TSHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHhCCCCCC------------C-------------cChHHHHHHHHHHHHHHHHHHH
Confidence 9999988 4876530 1 1288999999999887765544
No 22
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.04 E-value=0.049 Score=55.00 Aligned_cols=93 Identities=25% Similarity=0.259 Sum_probs=63.8
Q ss_pred hHHHHHhhcCC--CceEEEecc-cccHHHHhh---hcCCccC---ceechHHHHHHcC---------CCCCCcccCCCCC
Q psy5651 82 DGKLHEVLESD--RILKVIHGA-FGDAGGLLS---NFNIRLK---NVYDTQCAFTALQ---------LSDPRLLSQDLVP 143 (843)
Q Consensus 82 Ls~LkeLLEDp--sIlKVgHda-K~DL~~L~r---~~GI~L~---nVFDTQLAAyLLg---------p~~sG~~lp~~~~ 143 (843)
...|.++|.+- ...-|+||+ .+|+.+|.+ .+|+.+. .++||+..++.+. ++.
T Consensus 100 ~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~---------- 169 (238)
T 1y97_A 100 VRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGR---------- 169 (238)
T ss_dssp HHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCC----------
Confidence 35566777762 256799999 999998864 3576653 3799987776654 221
Q ss_pred CCCCHHHHHHH-hCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 144 HTIGLNDLLKF-YKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYA 209 (843)
Q Consensus 144 ~s~SLa~Lver-yGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLe 209 (843)
.+++|++|+++ ||++.. ..+.|..||..+..|+..+.+++.
T Consensus 170 ~~~~L~~l~~~~~gi~~~-------------------------~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 170 QGYSLGSLFHRYFRAEPS-------------------------AAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp -CCSHHHHHHHHHSSCCC----------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHhCCCCc-------------------------cCccHHHHHHHHHHHHHHHHHHHH
Confidence 26899999996 586532 023488999999999998876554
No 23
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.24 E-value=0.18 Score=49.52 Aligned_cols=93 Identities=10% Similarity=0.067 Sum_probs=60.5
Q ss_pred HHHHHhhcCCC-----ceEEEecccccHH-HHhh---hcCCccC----ceechHHHHHHcCCCCCCcccCCCCCCCCCHH
Q psy5651 83 GKLHEVLESDR-----ILKVIHGAFGDAG-GLLS---NFNIRLK----NVYDTQCAFTALQLSDPRLLSQDLVPHTIGLN 149 (843)
Q Consensus 83 s~LkeLLEDps-----IlKVgHdaK~DL~-~L~r---~~GI~L~----nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa 149 (843)
..|.+++.+.. ..-|+||+.+|+. +|.+ .+|+... .++||+..+..+-+.. ..+++|+
T Consensus 90 ~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~---------~~~~~L~ 160 (204)
T 1w0h_A 90 KKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP---------RSQTKLT 160 (204)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC---------GGGCSHH
T ss_pred HHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC---------CccchHH
Confidence 44555666532 3469999999996 7754 3566533 4789987665432211 0247999
Q ss_pred HHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 150 DLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEY 208 (843)
Q Consensus 150 ~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rL 208 (843)
+|++.||++.. .+. +-|..||.++..|+..|.++.
T Consensus 161 ~l~~~~gi~~~-----------~~~-------------H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 161 IMLEKLGMDYD-----------GRP-------------HCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp HHHHHTTCCCC-----------SCT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCC-----------CCc-------------cCcHHHHHHHHHHHHHHHHCC
Confidence 99999876543 001 127899999999998876543
No 24
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.24 E-value=0.15 Score=55.17 Aligned_cols=115 Identities=20% Similarity=0.182 Sum_probs=71.0
Q ss_pred hHHHHHhhcC--CCceEEEec-ccccHHHHhh---hcCCccC--c--eechHHHHH-HcCCCCCCcccCCCCCCCCCHHH
Q psy5651 82 DGKLHEVLES--DRILKVIHG-AFGDAGGLLS---NFNIRLK--N--VYDTQCAFT-ALQLSDPRLLSQDLVPHTIGLND 150 (843)
Q Consensus 82 Ls~LkeLLED--psIlKVgHd-aK~DL~~L~r---~~GI~L~--n--VFDTQLAAy-LLgp~~sG~~lp~~~~~s~SLa~ 150 (843)
+..|.+++.+ +...-|+|| +.+|+.+|.+ .+|+... + ++||....+ +......+. .....+++|++
T Consensus 105 ~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~---~~~~~~~~L~~ 181 (314)
T 3u3y_B 105 AILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSG---NGSRKSYSLGS 181 (314)
T ss_dssp HHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC----------CCCCSHHH
T ss_pred HHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccc---cccCCCCCHHH
Confidence 3455667776 225679999 8999998864 4576642 2 789998666 332110000 00123689999
Q ss_pred HHHH-hCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhccc
Q psy5651 151 LLKF-YKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYALKQNRLLLDNLIYETLFNHV 229 (843)
Q Consensus 151 Lver-yGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee~G~~~LfeEEc~e~~y~~v 229 (843)
|+++ ||++... .. -|..||..+.+|+..+.+++. .|+++.+. -+..+
T Consensus 182 L~~~l~gi~~~~------------aH-------------rAl~DA~ata~lf~~l~~~~l-----~~~~~~~~--p~~~i 229 (314)
T 3u3y_B 182 IYTRLYWQAPTD------------SH-------------TAEGHVLTLLSICQWKPQALL-----QWVDEHAR--PFSTV 229 (314)
T ss_dssp HHHHHHSSCCSC------------SS-------------SHHHHHHHHHHHHHSSHHHHH-----HHHHHHCE--EGGGS
T ss_pred HHHHhcCCCCCC------------CC-------------CHHHHHHHHHHHHHHHHHHHH-----HHHhhcCC--CHHHc
Confidence 9999 5876530 11 178999999999998776554 46554432 24444
Q ss_pred CC
Q psy5651 230 VP 231 (843)
Q Consensus 230 ~~ 231 (843)
+|
T Consensus 230 ~p 231 (314)
T 3u3y_B 230 KP 231 (314)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 25
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=93.54 E-value=0.69 Score=48.88 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=61.1
Q ss_pred hHHHHHhhcCCC-----ceEEEecccccHH-HHhhh---cCCccC----ceechHHHHH-HcCCCCCCcccCCCCCCCCC
Q psy5651 82 DGKLHEVLESDR-----ILKVIHGAFGDAG-GLLSN---FNIRLK----NVYDTQCAFT-ALQLSDPRLLSQDLVPHTIG 147 (843)
Q Consensus 82 Ls~LkeLLEDps-----IlKVgHdaK~DL~-~L~r~---~GI~L~----nVFDTQLAAy-LLgp~~sG~~lp~~~~~s~S 147 (843)
+..|.+++.+.. ..-|+|++.+|+. +|.+. +|+... .+.||+.... +++... ..++
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~----------~~~~ 226 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR----------SQTK 226 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG----------GGCS
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC----------CCcc
Confidence 345666776641 4579999999998 88543 566543 4889975443 333211 1489
Q ss_pred HHHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 148 LNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEY 208 (843)
Q Consensus 148 La~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rL 208 (843)
|++|+++||++.. ... +-|..||.++..|+..+..+.
T Consensus 227 L~~l~~~~gi~~~-----------g~~-------------H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 227 LTIMLEKLGMDYD-----------GRP-------------NCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp HHHHHHHTTCCCC-----------SCT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCC-----------CCC-------------CChHHHHHHHHHHHHHHHHhC
Confidence 9999999886543 001 127899999999998876544
No 26
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=92.70 E-value=0.87 Score=51.76 Aligned_cols=147 Identities=12% Similarity=-0.003 Sum_probs=83.2
Q ss_pred hcCCeEEEEeeeeCC-CcCceEEEEEEE-Ee-CC------eEEEEeCCC-C--Cc--------------------ccchH
Q psy5651 36 LNESKVGLDLEGMDL-GVDGKVSLVSLA-LQ-NG------KIFIFDVYS-C--PL--------------------IMFDG 83 (843)
Q Consensus 36 k~s~~IALDtE~~~~-ty~gkL~LIQIA-T~-dg------qvyLID~la-L--~~--------------------~~dLs 83 (843)
.....+.+|+|+.+. +..++++-+... +. ++ -..+|.+.. . .. ...+.
T Consensus 7 ~~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~ 86 (482)
T 2qxf_A 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA 86 (482)
T ss_dssp CCCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHH
Confidence 345689999999988 555554333222 12 22 234554432 1 00 01223
Q ss_pred HHHHhhcCCCceEEEec-ccccHHHHhh---hcCCcc--------CceechHHHHHHcCCCC-CCcccC--CCCCCCCCH
Q psy5651 84 KLHEVLESDRILKVIHG-AFGDAGGLLS---NFNIRL--------KNVYDTQCAFTALQLSD-PRLLSQ--DLVPHTIGL 148 (843)
Q Consensus 84 ~LkeLLEDpsIlKVgHd-aK~DL~~L~r---~~GI~L--------~nVFDTQLAAyLLgp~~-sG~~lp--~~~~~s~SL 148 (843)
.|.+++..+..+-|+|| +.+|..+|.+ .+|+.+ ...+||.-.+..+.+-. .|...| .....+++|
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL 166 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCH
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCH
Confidence 45556764566789999 8999998754 344432 23678876665542100 000001 001136899
Q ss_pred HHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 149 NDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207 (843)
Q Consensus 149 a~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~r 207 (843)
++|++.||++.. . .+-|..||.++..|+..+..+
T Consensus 167 ~~L~~~~Gi~~~--~-----------------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 167 EHLTKANGIEHS--N-----------------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHHTTCCCC----------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCC--C-----------------------CCCHHHHHHHHHHHHHHHHHh
Confidence 999998886542 0 012668999999998887654
No 27
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=92.44 E-value=0.039 Score=48.91 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=38.7
Q ss_pred hHhhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhhh
Q psy5651 236 KRRQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLLN 287 (843)
Q Consensus 236 ~r~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i~ 287 (843)
+++++++++|+.||++.|++ +.|+.+|+. |..|+......|.+..++..
T Consensus 10 ~~~~~l~~~L~~wR~~~A~~~~vpp~~If~---D~tL~eiA~~~P~t~~eL~~ 59 (89)
T 1wud_A 10 NYDRKLFAKLRKLRKSIADESNVPPYVVFN---DATLIEMAEQMPITASEMLS 59 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCHHHHCC---HHHHHHHHHHCCCSHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcceeeC---HHHHHHHHHhCCCCHHHHhh
Confidence 45678899999999999987 599999995 66788766667777666553
No 28
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=92.37 E-value=0.053 Score=49.35 Aligned_cols=64 Identities=14% Similarity=0.359 Sum_probs=52.5
Q ss_pred cccc-hhhHHhhhhhHhhhhccCCcc-ceEEeeec---CCc-cceeEEEecchHHHHHHHHHHHHHHhcC
Q psy5651 308 VIDT-KMYQCFNKKFYFDIKQSKSTK-FIKISEVN---MDQ-TRNQIHISMSVVGHLRDHLNALLTAHQN 371 (843)
Q Consensus 308 ~L~S-k~L~~l~Kr~y~DlKeN~RGr-FlkI~E~~---~~g-~rs~I~ls~~~~~efrd~L~~lie~y~~ 371 (843)
+|=| +.+..-.+-||+|+|+|..|. ||.|+|.. .++ .+..|.|...-...|.+.|.+.+++--.
T Consensus 4 EvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~ 73 (98)
T 3n8b_A 4 EVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQ 73 (98)
T ss_dssp EEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHH
Confidence 3434 444555788999999999999 99999983 233 5999999999999999999999998865
No 29
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=91.21 E-value=0.081 Score=45.38 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 239 QFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 239 l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
.+++++|+.||++.|++ +.|+.+|+. +..|.......|.+..++.
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp~~I~~---d~~L~~iA~~~P~t~~eL~ 50 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSAFVVFT---NATLEALAARQPRTLAELA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCC---HHHHHHHHHHCCCSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeeC---HHHHHHHHHhCCCCHHHHh
Confidence 46789999999999987 599999995 5678876556677666554
No 30
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=88.41 E-value=2.6 Score=42.32 Aligned_cols=89 Identities=11% Similarity=0.049 Sum_probs=54.2
Q ss_pred hHHHHHhhcCCCceEEEecc--------cccHHH-Hhh---hcCCccC----ceechHHHHHHcCCCCCCcccCCCCCCC
Q psy5651 82 DGKLHEVLESDRILKVIHGA--------FGDAGG-LLS---NFNIRLK----NVYDTQCAFTALQLSDPRLLSQDLVPHT 145 (843)
Q Consensus 82 Ls~LkeLLEDpsIlKVgHda--------K~DL~~-L~r---~~GI~L~----nVFDTQLAAyLLgp~~sG~~lp~~~~~s 145 (843)
+..|.+++.+.- .|+||+ .+|+.. |.+ .+|+... ..+|++-...+..... ..
T Consensus 108 ~~~f~~~l~~~~--lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~----------p~ 175 (224)
T 2xri_A 108 LERVDEWMAKEG--LLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCW----------PK 175 (224)
T ss_dssp HHHHHHHHHHTT--TTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSC----------CT
T ss_pred HHHHHHHHhhcc--cccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccC----------CC
Confidence 345566776543 368888 999985 532 4566543 4779543222211100 13
Q ss_pred CCHHHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 146 IGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTK 206 (843)
Q Consensus 146 ~SLa~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~ 206 (843)
++|.+|++.||++.. .+. +-|..||..+..|+..|..
T Consensus 176 ~~L~~l~~~~gi~~~-----------~~~-------------H~Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 176 NGLLDMNKGLSLQHI-----------GRP-------------HSGIDDCKNIANIMKTLAY 212 (224)
T ss_dssp TTHHHHHHHTTCCCC-----------SCT-------------TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCC-----------CCC-------------cChHHHHHHHHHHHHHHHH
Confidence 799999998876542 000 1278999999999887753
No 31
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=87.85 E-value=0.24 Score=45.14 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 238 RQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 238 ~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
.++++++|..||++.|++ +.|+.+|+. |..|+......|.+..++.
T Consensus 21 ~~~l~~~L~~wR~~~A~~~~vP~~~If~---D~tL~eiA~~~P~t~~eL~ 67 (101)
T 2rrd_A 21 VKKCLGELTEVCKSLGKVFGVHYFNIFN---TVTLKKLAESLSSDPEVLL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHCC---HHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeeEC---HHHHHHHHHhCCCCHHHHh
Confidence 557789999999999987 499999995 6678876566677766554
No 32
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=86.90 E-value=0.28 Score=42.94 Aligned_cols=46 Identities=15% Similarity=-0.031 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 238 RQFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 238 ~l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
...++.+|..||++.|++ +.|+.+|+. +..|+......|.+..++.
T Consensus 6 ~~~l~~~L~~wR~~~A~~~~vp~~~If~---d~tL~~iA~~~P~t~~eL~ 52 (85)
T 2kv2_A 6 VKKCLGELTEVCKSLGKVFGVHYFNIFN---TVTLKKLAESLSSDPEVLL 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCHHHHCC---HHHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceeEC---HHHHHHHHHhCCCCHHHHh
Confidence 345678999999999987 599999995 5678876666677766654
No 33
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=86.79 E-value=1.9 Score=45.88 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=55.4
Q ss_pred HHHHHhhcCCCceEEEecc------cccH-HHHhh---hcCCccC----ceechHHHHHHcCCCCCCcccCCCCCCCCCH
Q psy5651 83 GKLHEVLESDRILKVIHGA------FGDA-GGLLS---NFNIRLK----NVYDTQCAFTALQLSDPRLLSQDLVPHTIGL 148 (843)
Q Consensus 83 s~LkeLLEDpsIlKVgHda------K~DL-~~L~r---~~GI~L~----nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SL 148 (843)
..|.+++.+..+ |+|++ .+|+ .+|.+ .+|+.+. ..+||+-.+..+-+... . .....+++|
T Consensus 100 ~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~---~~~~~~~~L 173 (308)
T 3cg7_A 100 EQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMG-P---KELSATTNI 173 (308)
T ss_dssp HHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHC-C---CCCCCCSHH
T ss_pred HHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcccc-c---cccccCcCH
Confidence 445556665332 45655 8998 56643 4577654 37899855543321100 0 000114789
Q ss_pred HHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 149 NDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207 (843)
Q Consensus 149 a~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~r 207 (843)
.++++.||++.. ... +-|..||.++..|+..|..+
T Consensus 174 ~~l~~~~gi~~~-----------~~~-------------HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 174 GKMNEYYDLPTI-----------GRA-------------HDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHHHHHTTCCCC-----------SCT-------------TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCC-----------CCC-------------cCHHHHHHHHHHHHHHHHHc
Confidence 999988886543 000 12779999999998877543
No 34
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=85.54 E-value=0.35 Score=44.95 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHhhhc-CCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 239 QFRQNQLRRWRKDLMSSK-RPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 239 l~~L~eL~~WRe~~Ar~~-~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
.+++++|..||++.|++. .|+.+|+. |..|+......|.+..++.
T Consensus 22 ~~l~~~L~~wR~~~A~~~~vP~y~If~---D~tL~emA~~~P~t~~eL~ 67 (113)
T 2dgz_A 22 IVLYGKLVEARQKHANKMDVPPAILAT---NKILVDMAKMRPTTVENVK 67 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHCC---HHHHHHHHHHCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeeEC---HHHHHHHHHhCCCCHHHHH
Confidence 467899999999999874 99999995 6688876666777766554
No 35
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=85.03 E-value=0.34 Score=44.31 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhhh-cCCcCceecccCccchhhhhhCCCchhhhhh
Q psy5651 239 QFRQNQLRRWRKDLMSS-KRPYPYIEEVNSNEYIWRNDYNVPLANAKLL 286 (843)
Q Consensus 239 l~~L~eL~~WRe~~Ar~-~~pr~~I~~~n~~~~l~~~q~~vP~~~~~~i 286 (843)
.+.+.+|..||++.|++ +.|+.+|+. |..|+......|.+..++.
T Consensus 15 ~~l~~~L~~wR~~~A~~~~vP~y~If~---D~tL~emA~~~P~t~~eL~ 60 (103)
T 2e1f_A 15 IVLYGKLVEARQKHANKMDVPPAILAT---NKILVDMAKMRPTTVENVK 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHCC---HHHHHHHHHHCCCSHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeeEC---HHHHHHHHHhCCCCHHHHh
Confidence 46789999999999987 599999995 6688876666677765544
No 36
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=82.55 E-value=3.5 Score=44.82 Aligned_cols=93 Identities=10% Similarity=0.110 Sum_probs=60.9
Q ss_pred hHHHHHhhcCCC-----ceEEEecccccHH-HHhhh---cCCccC----ceechHHHHHH-cCCCCCCcccCCCCCCCCC
Q psy5651 82 DGKLHEVLESDR-----ILKVIHGAFGDAG-GLLSN---FNIRLK----NVYDTQCAFTA-LQLSDPRLLSQDLVPHTIG 147 (843)
Q Consensus 82 Ls~LkeLLEDps-----IlKVgHdaK~DL~-~L~r~---~GI~L~----nVFDTQLAAyL-Lgp~~sG~~lp~~~~~s~S 147 (843)
+..|..++.+.. ..-|+|++.+|+. +|.+. +|+... .+.||+..... ++... ..++
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~----------~~~~ 276 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR----------SQTK 276 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG----------GGGS
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC----------CCCC
Confidence 344556776641 3579999999998 87543 566543 47899765433 22211 1489
Q ss_pred HHHHHHHhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 148 LNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEY 208 (843)
Q Consensus 148 La~LveryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rL 208 (843)
|++|+++||++.. ... +-|..||.++..|+..|..+.
T Consensus 277 L~~l~~~~gi~~~-----------g~~-------------HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 277 LTIMLEKLGMDYD-----------GRP-------------HCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp HHHHHHHTTCCCC-----------SCT-------------TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCC-----------CCC-------------CCHHHHHHHHHHHHHHHHHhc
Confidence 9999999886543 001 127899999999998876544
No 37
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=78.71 E-value=19 Score=38.31 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=57.5
Q ss_pred cCCCceEEEecccccHHHHhhhc-CCcc---------------CceechHHHHHHcCCCCCCcccCCCCCCCCCHHHHHH
Q psy5651 90 ESDRILKVIHGAFGDAGGLLSNF-NIRL---------------KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDLLK 153 (843)
Q Consensus 90 EDpsIlKVgHdaK~DL~~L~r~~-GI~L---------------~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SLa~Lve 153 (843)
-++++.+|.|...+|+-.|.+.+ |-.+ +.++||-..+..++.- .-||++|++
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l------------~ggL~~lA~ 214 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL------------KGGLQEVAE 214 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTC------------CSCHHHHHH
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhcccc------------CChHHHHHH
Confidence 36788999888888986655432 2211 2488988777665321 248999999
Q ss_pred HhCCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5651 154 FYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYAL 210 (843)
Q Consensus 154 ryGv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLee 210 (843)
.++++.- + . . +-|+.|+..+...|-.|++.+-+
T Consensus 215 ~L~v~r~-------g---~-----------~---HqAGsDSllT~~~F~kl~~~~f~ 247 (285)
T 4gmj_B 215 QLELERI-------G---P-----------Q---HQAGSDSLLTGMAFFKMREMFFE 247 (285)
T ss_dssp HTTCCCC-------S---C-----------T---TSHHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCCC-------C---C-----------C---CcchhHHHHHHHHHHHHHHHHhc
Confidence 8865421 0 0 0 12899999999999999888763
No 38
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=78.37 E-value=3.3 Score=51.22 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=67.3
Q ss_pred ceEEEecccccHHHHhhhcCCccCc--eechHHHHHHcCC-CC-------------------------------CC----
Q psy5651 94 ILKVIHGAFGDAGGLLSNFNIRLKN--VYDTQCAFTALQL-SD-------------------------------PR---- 135 (843)
Q Consensus 94 IlKVgHdaK~DL~~L~r~~GI~L~n--VFDTQLAAyLLgp-~~-------------------------------sG---- 135 (843)
-+.||||..+|-..+...|.+...+ ++|||-.+-...- .. .|
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 4569999999998877888887665 7799876644321 00 00
Q ss_pred --cccCCCCCCCCCHHHHHHHh-CC-CCccccccccccccCCCccCCCCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q psy5651 136 --LLSQDLVPHTIGLNDLLKFY-KI-SPNNFKKNIQNLYRENPHIWKTRPLT------SDMLLYAAADVESLLALFHRMT 205 (843)
Q Consensus 136 --~~lp~~~~~s~SLa~Lvery-Gv-~Ld~~Kd~vK~~~keq~SDW~~RPLS------eeQL~YAA~DA~~LL~Lyd~L~ 205 (843)
.|+....+.+-||+++++.| |. +++ |+ .+..|..-++. ++-+.|+|.||.++.++|..+.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ld--K~--------~Rd~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLE--KE--------PRELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS----SC--------SSSSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccC--hh--------hHhhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111111112677877777 75 666 42 23333333332 5668999999999999999998
Q ss_pred HHHHh
Q psy5651 206 KEYAL 210 (843)
Q Consensus 206 ~rLee 210 (843)
....+
T Consensus 345 P~F~e 349 (1172)
T 3ikm_A 345 PLFLE 349 (1172)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 88654
No 39
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=69.11 E-value=2.3 Score=40.22 Aligned_cols=29 Identities=34% Similarity=0.653 Sum_probs=25.1
Q ss_pred ceeeeeceEEEEEcCCCCce-eEEEEeeec
Q psy5651 457 NYMRCNNKRFFFNVSKNGKG-TFMRISEIS 485 (843)
Q Consensus 457 ~~~r~d~K~fyFD~g~N~rG-~fLRISEv~ 485 (843)
++++++.++|||||.+|..| .||-|+|.+
T Consensus 16 kv~~aGkRTYFFDVK~tR~gDyyLtITESK 45 (127)
T 3nm7_A 16 KLFTESERTYFFNVKENRKGDYFLNIVESK 45 (127)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred HHhhCCCeeEEEEeecccCCCeEEEEEeec
Confidence 45567899999999999997 689999988
No 40
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=68.47 E-value=43 Score=40.00 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=64.1
Q ss_pred hHHHHHhhc--CCCceEEEeccc-ccHHHHhh---hcCCcc----------------------Cc--eechHHHHHHcCC
Q psy5651 82 DGKLHEVLE--SDRILKVIHGAF-GDAGGLLS---NFNIRL----------------------KN--VYDTQCAFTALQL 131 (843)
Q Consensus 82 Ls~LkeLLE--DpsIlKVgHdaK-~DL~~L~r---~~GI~L----------------------~n--VFDTQLAAyLLgp 131 (843)
+..|..++. ||++ -||||.. +|+..|.. .+|+.+ .+ ++|++..+.-...
T Consensus 191 L~~f~~~i~~~dPDi-ivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~ 269 (775)
T 1qht_A 191 IKRFLRVVREKDPDV-LITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTIN 269 (775)
T ss_dssp HHHHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCCE-EEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcC
Confidence 344555554 5775 5899875 68877654 245442 23 6788776654321
Q ss_pred CCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 132 SDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMT 205 (843)
Q Consensus 132 ~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~ 205 (843)
..+++|+++++++ |..-..+.. ..-..-|...|--...+.|...||..++.|+..+.
T Consensus 270 -----------l~sysL~~Va~~~Lg~~K~dv~~------~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 270 -----------LPTYTLEAVYEAVFGKPKEKVYA------EEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -----------CSCCCHHHHHHHHHCCCCCCCCH------HHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cCcCCHHHHHHHHhCCCCCccCH------HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1258999999987 764322110 00012244433116779999999999999987654
No 41
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=67.75 E-value=45 Score=38.57 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=76.3
Q ss_pred CCeEEEEeeeeCCCcCceEEEEEEEEeCC-eEEEEeCCCCCcccchHHHHHhhcCCCceEEEecccccHHHHhhh---cC
Q psy5651 38 ESKVGLDLEGMDLGVDGKVSLVSLALQNG-KIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSN---FN 113 (843)
Q Consensus 38 s~~IALDtE~~~~ty~gkL~LIQIAT~dg-qvyLID~laL~~~~dLs~LkeLLEDpsIlKVgHdaK~DL~~L~r~---~G 113 (843)
...+++|+|....+..+.+..+.+...+. ..|..+- .+..+-+++.+-+..-++||.++|...|..+ .|
T Consensus 6 ~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~~~~-------~l~~fi~~~~~~~~~i~~hNl~FD~~~l~~~~~~~~ 78 (575)
T 2py5_A 6 RKMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIGN-------SLDEFMAWVLKVQADLYFHNLKFAGAFIINWLERNG 78 (575)
T ss_dssp CCEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEES-------CHHHHHHHHHHHCCEEEETTHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEEeecCCCCCceEEEEEEeCCceEEEEech-------hHHHHHHHHHHcCCEEEEEChhhhHHHHHHHHHHhC
Confidence 35789999985444444555555543221 2233221 2344555555545567899999999887543 22
Q ss_pred -------Cc------c-Cc--e--echH--------------HHHHHcCCCCCCcccCCCCCCCCCHHHHHHHhCCCCcc
Q psy5651 114 -------IR------L-KN--V--YDTQ--------------CAFTALQLSDPRLLSQDLVPHTIGLNDLLKFYKISPNN 161 (843)
Q Consensus 114 -------I~------L-~n--V--FDTQ--------------LAAyLLgp~~sG~~lp~~~~~s~SLa~LveryGv~Ld~ 161 (843)
+. + .+ + +|.. -...+ -+.||+.+++.|+.+..
T Consensus 79 ~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~---------------~~~SL~~~a~~f~~~~~- 142 (575)
T 2py5_A 79 FKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKK---------------LPFPVKKIAKDFKLTVL- 142 (575)
T ss_dssp CEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHH---------------SCSCHHHHHHHTTCCCC-
T ss_pred cccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhh---------------hhhhHHHHHHHhCCccc-
Confidence 10 0 01 0 1111 11111 13699999999854322
Q ss_pred ccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5651 162 FKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRM 204 (843)
Q Consensus 162 ~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L 204 (843)
|... .....+..+| -+.++.+.|+..||..|..++...
T Consensus 143 -K~~~-py~~~~~~~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 143 -KGDI-DYHKERPVGY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp -SSCC-CTTSCCCTTC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcc-CccccCcccc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0000122334 366889999999999999988754
No 42
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=54.45 E-value=1.1e+02 Score=37.16 Aligned_cols=143 Identities=16% Similarity=0.156 Sum_probs=79.7
Q ss_pred CeEEEEeee-eCC-CcCce-----EEEEEEEEe--CC--eEEEEeCCCC--------C--------cccchHHHHHhhcC
Q psy5651 39 SKVGLDLEG-MDL-GVDGK-----VSLVSLALQ--NG--KIFIFDVYSC--------P--------LIMFDGKLHEVLES 91 (843)
Q Consensus 39 ~~IALDtE~-~~~-ty~gk-----L~LIQIAT~--dg--qvyLID~laL--------~--------~~~dLs~LkeLLED 91 (843)
..+++|.|. .+. +..|. --++||+.. ++ .++++..... + ..+.+..|.+++.+
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~LL~~f~~~i~~ 270 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDILLE 270 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHHTT
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEEEEEeCCcccccccCCCCCeEEEeCCHHHHHHHHHHHhcc
Confidence 459999999 422 22221 235666543 22 3555543211 1 11246677788888
Q ss_pred CCceEEEeccc-ccHHHHhh---hcCCc-------c--------Cc--eechHHHHH--H---cCCCCCCcccCCCCCCC
Q psy5651 92 DRILKVIHGAF-GDAGGLLS---NFNIR-------L--------KN--VYDTQCAFT--A---LQLSDPRLLSQDLVPHT 145 (843)
Q Consensus 92 psIlKVgHdaK-~DL~~L~r---~~GI~-------L--------~n--VFDTQLAAy--L---Lgp~~sG~~lp~~~~~s 145 (843)
+. .-|+||.. +|+..|.. .+|+. + .+ .+|++.... . ..++ ....+
T Consensus 271 ~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~--------~kl~s 341 (847)
T 1s5j_A 271 YP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFE--------GKYNE 341 (847)
T ss_dssp CS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTST--------TCCSS
T ss_pred CC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhccc--------ccccc
Confidence 86 57899875 79987754 35653 1 12 467663321 0 0111 01136
Q ss_pred CCHHHHHHHh-CCCCccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5651 146 IGLNDLLKFY-KISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFH 202 (843)
Q Consensus 146 ~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd 202 (843)
++|.++++.+ |..-..+ . ..|... -....++|+..||..++.|+.
T Consensus 342 ysL~~Va~~~Lg~~K~dv----------~-~~i~~~-~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 342 YNLDAVAKALLGTSKVKV----------D-TLISFL-DVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp CSHHHHHHHHHCCCCC------------S-SCTTTC-CHHHHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHhCCCCcch----------h-Hhhhhc-cHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988 7532211 0 122211 125678999999999999864
No 43
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=50.99 E-value=39 Score=32.11 Aligned_cols=30 Identities=13% Similarity=-0.145 Sum_probs=21.1
Q ss_pred HHHHHhhcCC----CceEEEecccccHHHHhhhc
Q psy5651 83 GKLHEVLESD----RILKVIHGAFGDAGGLLSNF 112 (843)
Q Consensus 83 s~LkeLLEDp----sIlKVgHdaK~DL~~L~r~~ 112 (843)
..|.+++.+- ....|+||+.+|+.+|.+.+
T Consensus 86 ~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~ 119 (180)
T 2igi_A 86 LATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYM 119 (180)
T ss_dssp HHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHH
Confidence 4455666641 34679999999999996543
No 44
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=48.94 E-value=31 Score=34.15 Aligned_cols=39 Identities=15% Similarity=-0.019 Sum_probs=23.8
Q ss_pred HHHHHhhcC----CCceEEEecccccHHHHhhhc---CCccC-ceec
Q psy5651 83 GKLHEVLES----DRILKVIHGAFGDAGGLLSNF---NIRLK-NVYD 121 (843)
Q Consensus 83 s~LkeLLED----psIlKVgHdaK~DL~~L~r~~---GI~L~-nVFD 121 (843)
..|.+++.. ...+-|+|++.+|...|.+.+ |..+. .++|
T Consensus 90 ~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iD 136 (186)
T 3tr8_A 90 TLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLD 136 (186)
T ss_dssp HHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEE
T ss_pred HHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEe
Confidence 344555621 234569999999999886543 33333 2667
No 45
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=38.81 E-value=40 Score=36.70 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=61.6
Q ss_pred hHHHHHhh--cCCCceEEEecc-cccHHHHhhh----cCC---------------------------ccCc--eechHHH
Q psy5651 82 DGKLHEVL--ESDRILKVIHGA-FGDAGGLLSN----FNI---------------------------RLKN--VYDTQCA 125 (843)
Q Consensus 82 Ls~LkeLL--EDpsIlKVgHda-K~DL~~L~r~----~GI---------------------------~L~n--VFDTQLA 125 (843)
+..+..++ .||++ -+|||. .+|+..|.+. +|+ .+.| ++|+..+
T Consensus 195 L~~f~~~i~~~dPDi-i~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~~ 273 (388)
T 1noy_A 195 LMEYINLWEQKRPAI-FTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDL 273 (388)
T ss_dssp HHHHHHHHHHSCCSE-EECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHH
T ss_pred HHHHHHHHHHhCCcE-EEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHHH
Confidence 34455555 46876 478998 4688654321 231 1222 6788887
Q ss_pred HHHcCCCCCCcccCCCCCCCCCHHHHHHHh-CCCCccccccccccccCCCcc-CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5651 126 FTALQLSDPRLLSQDLVPHTIGLNDLLKFY-KISPNNFKKNIQNLYRENPHI-WKTRPLTSDMLLYAAADVESLLALFHR 203 (843)
Q Consensus 126 AyLLgp~~sG~~lp~~~~~s~SLa~Lvery-Gv~Ld~~Kd~vK~~~keq~SD-W~~RPLSeeQL~YAA~DA~~LL~Lyd~ 203 (843)
+.-+.... ..+++|+++++++ |..-.+.. ..... |.. -....+.|+..||...+.|+..
T Consensus 274 ~k~~~~~~---------l~sysL~~Va~~~Lg~~K~d~~--------~~i~~~~~~--~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 274 YKKFAFTN---------LPSFSLESVAQHETKKGKLPYD--------GPINKLRET--NHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp HHHHTCCC---------CSCCSHHHHHHHHHSCCCCCCS--------SCGGGHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCcCc---------ccCCCHHHHHHHHhCCCCCCcH--------HHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHH
Confidence 77644321 1368999999987 75321110 11111 321 1156789999999999999987
Q ss_pred H
Q psy5651 204 M 204 (843)
Q Consensus 204 L 204 (843)
+
T Consensus 335 l 335 (388)
T 1noy_A 335 R 335 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=34.00 E-value=59 Score=36.26 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHHHhhcCCCceEEEecccccHHHHhhhc-CCcc--------------CceechHHHHHHcCCCCCCcccCCCCCCCCCH
Q psy5651 84 KLHEVLESDRILKVIHGAFGDAGGLLSNF-NIRL--------------KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGL 148 (843)
Q Consensus 84 ~LkeLLEDpsIlKVgHdaK~DL~~L~r~~-GI~L--------------~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SL 148 (843)
.+.+.|.+.+-+-||||+-.|+-.+++.| |-.| +.++||-..+....... ...+-+|
T Consensus 272 ~V~~~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~--------~~~~~sL 343 (430)
T 2a1r_A 272 RVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKD--------IINNTSL 343 (430)
T ss_dssp HHHHHHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTT--------TCSCCSH
T ss_pred HHHHHHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhh--------ccCCCCH
Confidence 33444444455679999999998776654 3322 24899988774332111 1124689
Q ss_pred HHHHHHh-CCCC--ccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 149 NDLLKFY-KISP--NNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYA 209 (843)
Q Consensus 149 a~Lvery-Gv~L--d~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLe 209 (843)
++|.+.+ ..+. +.+.- ..+ . .+.+. ..++.+=|+-|++..-.++-.|...|.
T Consensus 344 ~~l~~~l~~~~~~~p~i~~-~~~---~-~~y~~----~~~~~HeAGyDa~mTG~vFi~l~~~l~ 398 (430)
T 2a1r_A 344 AELEKRLKETPFNPPKVES-AEG---F-PSYDT----ASEQLHEAGYDAYITGLCFISMANYLG 398 (430)
T ss_dssp HHHHHHTTSTTCCCCCEEE-CTT---C-CCC---------CCCCHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCCCCeeec-CCC---c-ccccc----CCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 9988877 3221 11110 000 0 01111 122345588999999999999888774
No 47
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=31.24 E-value=1e+02 Score=29.94 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5651 190 AAADVESLLALFHRMTKEYA 209 (843)
Q Consensus 190 AA~DA~~LL~Lyd~L~~rLe 209 (843)
|..||..+..|+..+.+++.
T Consensus 163 Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 163 ALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 78999999999998887664
No 48
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=29.32 E-value=45 Score=37.95 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=63.3
Q ss_pred HHHHhhcCCCceEEEecccccHHHHhhhc-CCcc--------------CceechHHHHHHcCCCCCCcccCCCCCCCCCH
Q psy5651 84 KLHEVLESDRILKVIHGAFGDAGGLLSNF-NIRL--------------KNVYDTQCAFTALQLSDPRLLSQDLVPHTIGL 148 (843)
Q Consensus 84 ~LkeLLEDpsIlKVgHdaK~DL~~L~r~~-GI~L--------------~nVFDTQLAAyLLgp~~sG~~lp~~~~~s~SL 148 (843)
.+.+.|.+.+.+.||||+-.|+-.|++.| |-.| +.++||-..+....... . ..+-+|
T Consensus 267 ~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~---~-----~~~~~L 338 (507)
T 3d45_A 267 RVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMASTQPFKD---I-----INNTSL 338 (507)
T ss_dssp HHHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHH---H-----CCCCCH
T ss_pred HHHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcCcccc---c-----cCCCCH
Confidence 34455555677899999999998887654 3222 24889997654311100 0 013589
Q ss_pred HHHHHHh-CCC--CccccccccccccCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5651 149 NDLLKFY-KIS--PNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKEYA 209 (843)
Q Consensus 149 a~Lvery-Gv~--Ld~~Kd~vK~~~keq~SDW~~RPLSeeQL~YAA~DA~~LL~Lyd~L~~rLe 209 (843)
+.|.+.+ ..+ .+.+.. ..+...+.. +..+.+=|+-||+..-.++-.|...|.
T Consensus 339 ~~l~~~l~~~~~~~p~i~~------~~~~~~y~~---~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 339 AELEKRLKETPFDPPKVES------AEGFPSYDT---ASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp HHHHHHTTSTTCCCCCEEE------CTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCCCCCeEEe------ccccccccc---CCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 9999888 322 221110 011111111 122234599999999999999988775
No 49
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=21.45 E-value=67 Score=29.40 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHHHHHHhcCCC----CCCCCCccccccceeeecccEEEEe--ccCCCcceEEEEEecccCCCCCceEEE
Q psy5651 352 MSVVGHLRDHLNALLTAHQNTP----RHRYRDTHTIKSEVLIKDTRRYFLD--LKDNGRARFVTISQLLPVGGKLSSIAF 425 (843)
Q Consensus 352 ~~~~~efrd~L~~lie~y~~~~----~~~~~~~~~l~Se~i~ve~KrFyfD--lkeN~RGrFLRISE~~~r~~~Rs~I~I 425 (843)
.+.+.||.++|..+++.||-+. +++...+.---.=.+..|.+.|-+. ..+|.+|++---.+.|+..+.-
T Consensus 10 e~ii~el~~~~~~~l~~Ygld~vgifEEeGegn~YY~GYTVkKdd~~~~ih~PfikdedG~La~ekqeWTi~~d~----- 84 (103)
T 1ylx_A 10 SVVIEEFIDTLEPMMEAYGLDQVGIFEEHGEGNRYYVGYTINKDDEMITIHMPFVKNERGELALEKQEWTVRKDG----- 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCEEEEEEECSTTEEEEEEEEEETTEEEEEEEEEEECTTSCEEECCSCEEEEETT-----
T ss_pred HHHHHHHHHHHHHHHHHhCCcceeeeeecCCCceEEEEEEEccCCeEEEEeccceecCCCceeeecceeEEecCC-----
Confidence 3578999999999999998743 2222221222233566666666644 3577788776555544221111
Q ss_pred c-ccCHHHHHHHHHHHH
Q psy5651 426 P-AQDLGPIIGLISDLQ 441 (843)
Q Consensus 426 P-a~g~~~Frd~L~~l~ 441 (843)
| -.|...+-+||.+++
T Consensus 85 ~e~~Gy~sle~Al~e~i 101 (103)
T 1ylx_A 85 REKKGFHSLQEAMEEVI 101 (103)
T ss_dssp EEEEEECSHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHh
Confidence 1 256666666666654
Done!