RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5651
(843 letters)
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
repeat, PUR domain, whirly fold, DNA binding protein,
RNA binding protein; 2.10A {Drosophila melanogaster}
Length = 146
Score = 103 bits (257), Expect = 7e-26
Identities = 53/142 (37%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 307 EVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNALL 366
+ + TKM Q +K+FY D+KQ++ +FIK++E+ D R+QI++++S RDHL++
Sbjct: 3 QELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFS 62
Query: 367 TAHQNT---PRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSI 423
+ + + +KSE++IKD RRY+LDLK+N R RF+ +SQ + GG S I
Sbjct: 63 DYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQI 122
Query: 424 AFPAQDLGPIIGLISDLQQEHS 445
A PAQ + ++DL +E
Sbjct: 123 ALPAQGMIEFRDALTDLLEEFG 144
Score = 66.3 bits (161), Expect = 5e-13
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 383 IKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQ-------DLGPIIG 435
+ +++L ++R++LD+K N R RF+ ++++ G + S I L
Sbjct: 5 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRR-SQIYLALSTAAEFRDHLSSFSD 63
Query: 436 LISDLQQEHSCPEDEDGAPEGNYMRCNNKRFFFNVSKNGKGTFMRISEISTPSKVLTNIG 495
+ L ++ EDG + M + +R++ ++ +N +G F+R+S+ T + I
Sbjct: 64 YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIA 123
Query: 496 I 496
+
Sbjct: 124 L 124
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form,
hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A
2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Length = 208
Score = 97.6 bits (243), Expect = 4e-23
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 25/193 (12%)
Query: 21 LITDVQEAQSAMATIL----NESKVGLDLEGMDL---GVDGKVSLVSLALQNGKIFIFDV 73
+ + I + VG D+E + G +V+++ L + K ++F +
Sbjct: 19 YSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHI 78
Query: 74 YSCPLIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSD 133
+ +F L +LE+ I K G GD LL +F+++L++ + +++
Sbjct: 79 --SSMSVFPQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELT------DVAN 130
Query: 134 PRLLSQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAAD 193
+L T LN L+K K+I+ N W PLT D LYAA D
Sbjct: 131 EKLKC----AETWSLNGLVKHVLGKQLLKDKSIR---CSN---WSNFPLTEDQKLYAATD 180
Query: 194 VESLLALFHRMTK 206
+ L ++ ++
Sbjct: 181 AYAGLIIYQKLGN 193
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance,
RNA processing, hydrolase, gene regulation; 2.10A
{Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB:
2hbk_A 2hbl_A* 2hbm_A*
Length = 410
Score = 94.5 bits (235), Expect = 1e-20
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 21 LITDVQEAQSAMATILNESKVGLDLEGMDLGV-DGKVSLVSLALQNGKIFIFDVYSCPLI 79
+ E +S + + N ++ +DLE D G V L+ ++ + ++ D L
Sbjct: 89 WVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQIS-TRERDYLVD----TLK 143
Query: 80 MFD--GKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLL 137
+ + L+EV + I+KV HGAF D L + + + ++DT A A+ L L
Sbjct: 144 LRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSL- 202
Query: 138 SQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESL 197
L+ + K Y+ + W+ RPL+ M A AD L
Sbjct: 203 -AYLLENFANF-KTSKKYQ--------------LAD---WRIRPLSKPMTAAARADTHFL 243
Query: 198 LALFHRMTKEYALKQNRL 215
L ++ ++ + ++ N+L
Sbjct: 244 LNIYDQLRNK-LIESNKL 260
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 94.6 bits (235), Expect = 1e-20
Identities = 54/253 (21%), Positives = 91/253 (35%), Gaps = 49/253 (19%)
Query: 21 LITDVQEAQSAMATILNESKVGLDLEGMDLGVD---GKVSLVSLALQNGKIFIFDVYSCP 77
I+ + E +LN + ++LE G L+ ++ + FI D
Sbjct: 112 FISSLDELVELNEKLLNCQEFAVNLEHHS--YRSFLGLTCLMQIST-RTEDFIIDTLELR 168
Query: 78 LIMFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLL 137
M L+E L I+KV HGA D L +F + + N++DT A L L L
Sbjct: 169 SDM--YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSL- 225
Query: 138 SQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESL 197
L+ + D K Y+ + W+ RPL +ML YA D L
Sbjct: 226 -DHLLKLYCNV-DSNKQYQ--------------LAD---WRIRPLPEEMLSYARDDTHYL 266
Query: 198 LALFHRMTK-------------EYALKQNRLLLDNLIYETLFNHVVPLNIRKR--RQFRQ 242
L ++ +M + +++R + + +F L + ++ +
Sbjct: 267 LYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNT 326
Query: 243 NQLRR------WR 249
QL WR
Sbjct: 327 QQLTAFQLLFAWR 339
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 93.6 bits (233), Expect = 2e-20
Identities = 53/250 (21%), Positives = 80/250 (32%), Gaps = 51/250 (20%)
Query: 21 LITDVQEAQSAMATILNESKVGLDLEGMDLGV-DGKVSLVSLALQNGKIFIFDVYSCPLI 79
+IT S + + LD E + ++ L+ L + + D PL
Sbjct: 5 MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLF-DGEHLALID----PLG 59
Query: 80 MFD-GKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLS 138
+ D L +L I K +H D L+ F + + DTQ
Sbjct: 60 ITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR------- 112
Query: 139 QDLVPHTIGLNDLLKFYKISPNNFKKNIQNLY-RENPHIWKTRPLTSDMLLYAAADVESL 197
P + G +++ Y + R + W RPLT YAAADV L
Sbjct: 113 ----PMSWGFASMVEEY------SGVTLDKSESRTD---WLARPLTERQCEYAAADVWYL 159
Query: 198 LALFHRMTKE--------YALKQNRLLLDNLIYETLFNHVVP----LNIRKRRQFRQNQL 245
L + ++ E AL + RL+ P +I Q R QL
Sbjct: 160 LPITAKLMVETEASGWLPAALDECRLMQMRRQEVV-----APEDAWRDITNAWQLRTRQL 214
Query: 246 RR------WR 249
WR
Sbjct: 215 ACLQLLADWR 224
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 84.9 bits (210), Expect = 2e-17
Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 21 LITDVQEAQSAMATILNESK-VGLDLEGMDLGV-DGKVSLVSLALQNGKIFIFDVYSCPL 78
+I + + + + + + D E + LV I + D +
Sbjct: 20 VIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAA 79
Query: 79 IMFD-GKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLL 137
D + + + ++H + D + + ++DT+ A L L R
Sbjct: 80 AGADWNDFNRAVGD--AVWILHDSLQDLP-GFDELGMEPQRLFDTEIAARLLGL--KRFG 134
Query: 138 SQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESL 197
+ H +GL L K + + W RPL D YAA DVE L
Sbjct: 135 LAAVTEHFLGL-TLAKEHS--------------AAD---WSYRPLPRDWRNYAALDVELL 176
Query: 198 LALFHRMTKEYALKQNRL 215
+ L +M E +Q ++
Sbjct: 177 IELETKMRAE-LKRQGKM 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 85.7 bits (211), Expect = 3e-17
Identities = 77/541 (14%), Positives = 159/541 (29%), Gaps = 134/541 (24%)
Query: 6 QPQNNLLRTLMNRTNLITDVQ----------EAQSAMATILNESKV--GLDLEGMDLGVD 53
QP + R L D Q + + L E + + ++G+ LG
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV-LGS- 161
Query: 54 GKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLH-----EVLESDRILKVIHGAFGDAGGL 108
GK + + K+ D K+ + +L+++ +
Sbjct: 162 GKTWVALDVCLSYKV---------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---I 209
Query: 109 LSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHT-IGLND-----LLK-FYKISPNN 161
N+ R + + + ++Q RLL + + L + F N
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF------N 263
Query: 162 FK-------KNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTK----EYAL 210
+ Q + L + +V+SLL + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 211 KQNRLLLDNLIYETLFNHVVPLNIRKRRQFRQNQLRRWRKDLMSSKRPYPYIEEVNSNEY 270
N L ++I E++ + + + ++ + + SS + + EY
Sbjct: 324 TTNPRRL-SIIAESIRDGLATWD-----NWKHVNCDKLTTIIESS------LNVLEPAEY 371
Query: 271 --------IWRNDYNVPLANAKLLNNPINRMFHKEKESANEERIEVIDTKMYQCFNKKFY 322
++ ++P LL+ + + ++ + + +
Sbjct: 372 RKMFDRLSVFPPSAHIP---TILLS-----LIWFDVIKSDVMVV------VNKLHKYSLV 417
Query: 323 FDIKQSKSTKFIKISEVNMD---QTRN--QIHISMSVVGHLRDHLNALLTAHQNTPRHRY 377
KQ K + I I + ++ + N +H S + DH N T + Y
Sbjct: 418 E--KQPKEST-ISIPSIYLELKVKLENEYALHRS------IVDHYNIPKTFDSDDLIPPY 468
Query: 378 RDT--------HTIKSEVLIKDT--RRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPA 427
D H E + T R FLD RF + K+ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF------RF--------LEQKIRHDSTAW 514
Query: 428 QDLGPIIGLISDLQ--QEHSCPEDEDGAPEGNYMRCNNKRFFFNVSKNG-KGTFMRISEI 484
G I+ + L+ + + C D P+ + F + +N + + I
Sbjct: 515 NASGSILNTLQQLKFYKPYICDND----PKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 485 S 485
+
Sbjct: 571 A 571
Score = 59.9 bits (144), Expect = 3e-09
Identities = 56/342 (16%), Positives = 107/342 (31%), Gaps = 87/342 (25%)
Query: 4 KCQPQNNLLRTLM-NRTNLITDVQEAQSAMATILNESKVGLDL-EGMDL-----GVDGK- 55
C + L+ R +TD A + L+ + L E L +
Sbjct: 265 SC-------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 56 ------------VSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLESDRILKVIHGA-- 101
+S+++ ++++G +D + + D KL ++ES L V+ A
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLA-TWDNW--KHVNCD-KLTTIIESS--LNVLEPAEY 371
Query: 102 ---FGDAGGLLSNFNIRLK-------NVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDL 151
F + +I +V + +L L+ + TI + +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 152 LKFYKISPNNFK---KNIQNLYR--ENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTK 206
K+ N ++I + Y + P D Y S + H
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------SHIG-HHLKNI 484
Query: 207 EYALKQNRLLLDNLIYETLFNHVVPLNIRKRRQFRQNQLRR----WRK-----DLMSSKR 257
E+ + TLF V L+ R F + ++R W + + +
Sbjct: 485 EHPER-----------MTLFRMVF-LDFR----FLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 258 PY-PYIEEVNSNEYIWR-NDY--NVPLANAKLLNNPINRMFH 295
Y PYI + N +Y N +P L+ + +
Sbjct: 529 FYKPYICD-NDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 54.1 bits (129), Expect = 2e-07
Identities = 64/382 (16%), Positives = 120/382 (31%), Gaps = 97/382 (25%)
Query: 86 HEVLESDRIL--------KVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLL 137
V + R+ +++ + L N+ L + T+ Q S +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF-LMSPIKTEQ----RQPSMMTRM 111
Query: 138 SQDLVPHTIGLNDLLKFYKIS-PNNFKKNIQNLYRENPHIW----------KTRPLTSDM 186
+ N + Y +S + K Q L P KT + D+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDV 170
Query: 187 LLYAAADVESL-------LALFHRMTKEYALKQNRLLLDNLIYETLFNHVVPLNIRKRRQ 239
L + V+ L L + + E L+ L L+Y+ N + +
Sbjct: 171 CL--SYKVQCKMDFKIFWLNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIK 224
Query: 240 FRQNQLRRWRKDLMSSKRPYPY----IEEVNSNEYIWRNDYNVPLANAKLL-----NNPI 290
R + ++ + L+ SK PY + V + + W N +N+ + K+L
Sbjct: 225 LRIHSIQAELRRLLKSK-PYENCLLVLLNVQNAK-AW-NAFNL---SCKILLTTRFKQVT 278
Query: 291 NRMFHKEKESANEERIEVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQI-- 348
+ + +A I + M + KS +K + ++
Sbjct: 279 DFL-----SAATTTHISLDHHSM--------TLTPDEVKSL-LLKYLDCRPQDLPREVLT 324
Query: 349 ----HISMSVVGHLRDHLNALLTAHQNTPRHRYRD--THTIKS--EVL-IKDTRRYFLDL 399
+S+ + +RD L N +H D T I+S VL + R+ F L
Sbjct: 325 TNPRRLSI-IAESIRDGLATW----DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 400 ----KDNGRARFVTI-SQLLPV 416
I + LL +
Sbjct: 379 SVFPPS------AHIPTILLSL 394
Score = 47.2 bits (111), Expect = 3e-05
Identities = 64/471 (13%), Positives = 167/471 (35%), Gaps = 76/471 (16%)
Query: 357 HLRDHLNALLTAHQNTPRHRYRDTHTIKSEVLIKDTRRYFLDLKDNGRARFVT--ISQLL 414
H H++ HQ ++Y+D ++ + + + D++D ++ I ++
Sbjct: 2 HHHHHMDFETGEHQ----YQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHII 55
Query: 415 PVGGKLSSI----------------AFPAQDLGPIIG-LISDLQQEHSCPEDEDGAPEGN 457
+S F + L L+S ++ E P
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM----MTRM 111
Query: 458 YMRCNNKRFFFNVSKNGKGTFMRISEISTPSKVL------TNIGI-------KSNIKTDT 504
Y+ + R + + K R+ + L N+ I K+ + D
Sbjct: 112 YIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 505 NIRTNNINVKMKTNII-IKMKRRINIITTMKRSNIIKMKRRTNIITKMK-MSNIKMKINT 562
+ + KM I + +K + T ++ + + N ++ SNIK++I++
Sbjct: 171 -CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 563 IKMKMKTNNITKAKMKTSIKMKINIITKMKMEIIAKMKMNNTKMKISVTTKMESV-KMVN 621
I+ +++ + + + + +N+ + N KI +TT+ + V ++
Sbjct: 230 IQAELR-RLLKSKPYENCLLVLLNVQNA---KAWNAF---NLSCKILLTTRFKQVTDFLS 282
Query: 622 IFTRMEMKTNIIARVKRMTNVKMKINIIIKIM-MAKTSIKMTTNIIIKMKISMIMKAKIH 680
T + + +T ++K ++++K + + ++S+I I
Sbjct: 283 AATTTHIS--LDHHSMTLTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIR 338
Query: 681 INKVKVNITKMIMTKIITKVKMKTSIKMKINTFKVK------MKISIITKMNITNIKMKI 734
+ K + K+ T I+ +N + ++S+ + +I +
Sbjct: 339 DGLATWDNWKHVNCD-----KLTTIIESSLNVLEPAEYRKMFDRLSVFPP-S-AHIPTIL 391
Query: 735 NVITKMNMETN---NITIKMIRMTDIKMKINTITKIKVANIIIKVTKKTNN 782
+ ++ + + K+ + + ++ + T I + +I +++ K N
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLEN 441
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics,
protein structure initiative, center for eukaryot
structural genomics, CESG; 2.10A {Arabidopsis thaliana}
SCOP: c.55.3.5 PDB: 2q3s_A
Length = 206
Score = 59.6 bits (144), Expect = 4e-10
Identities = 23/176 (13%), Positives = 47/176 (26%), Gaps = 27/176 (15%)
Query: 41 VGLDLE---------GMDLGVDGKVSLVSLALQNGKIFIFDVYSCPLIMFDGKLHEVLES 91
V D+ +S V L+ +N + P L+ S
Sbjct: 49 VIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNL-CLFLRLPK-PFHDNLKDLYRFFAS 106
Query: 92 DRILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPRLLSQDLVPHTIGLNDL 151
+ V D L N + ++N + A L +G +L
Sbjct: 107 KFVTFVGVQIEEDLDLLRENHGLVIRNAINVG-KLAAEARGTLVL-------EFLGTREL 158
Query: 152 LKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207
+ W + + L AA + ++ ++ +++ E
Sbjct: 159 AHRV----LWSDLGQLDSIEAK---W-EKAGPEEQLEAAAIEGWLIVNVWDQLSDE 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 4e-09
Identities = 85/546 (15%), Positives = 148/546 (27%), Gaps = 198/546 (36%)
Query: 52 VDGKVSLVSLALQNGKI-FIFDVYSCPLIM----------FDGKLHEVLES----DRILK 96
+D S L L +G + + V P F+ L E E D
Sbjct: 1 MDA-YSTRPLTLSHGSLEHVLLV---PTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 97 VIHGAFGDAGGLLSNFNIRLKNVYDTQCAFTALQLSDPR-------------------LL 137
L+ F L + + + + L
Sbjct: 57 PAE--------LVGKF---L--------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 138 SQDLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLT---SDMLLYAAADV 194
D+ H + LL+ + K+ I+N RP + L A +
Sbjct: 98 GNDI--HALAAK-LLQENDTTLVKTKELIKNYITARIMA--KRPFDKKSNSALFRAVGEG 152
Query: 195 E-SLLALF----HRMTKEYALKQNRLLLDNL--IYET--------------LFNHVVPLN 233
L+A+F + T +Y + L +Y+T + ++
Sbjct: 153 NAQLVAIFGGQGN--TDDY--------FEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 234 IRKRRQFRQN-QLRRWRKDLMSSKRPYPYIEEVNSNEYIWRNDYNVP------LAN---- 282
+ + F Q + W ++ S P +Y+ + P LA+
Sbjct: 203 LDAEKVFTQGLNILEWLEN--PSNTP--------DKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 283 AKLLN-NPINRMFHKEKESANEERIEVI--------DT--KMYQCFNK--KFYFDI---- 325
AKLL P + A ++ D+ + K F I
Sbjct: 253 AKLLGFTPGE--LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 326 KQSKSTKFIKISEVNMDQTRNQIHI--SM-SVVGHLRDHLNALLTAHQNTPRHRYRDTH- 381
++ + S + D N + M S+ ++ + + T H
Sbjct: 311 YEAYPNTSLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNK---TNSHLPAGKQV 366
Query: 382 TIKSEVLIKDTRRYFLDLKDNGRARFVTISQLLPVGGKLSSIAFPAQDLGPIIGLISDLQ 441
I L+ NG V V G P Q L GL L+
Sbjct: 367 EI---SLV------------NGAKNLV-------VSG-------PPQSL---YGLNLTLR 394
Query: 442 QEHSCPE-DEDGAPEGNYMRCNNKRFFFNVSKNGKGTF-MRISEISTP--SKVLTNIGIK 497
+ + D+ P ++R K F R +++P S +L
Sbjct: 395 KAKAPSGLDQSRIP-------FSER---------KLKFSNRFLPVASPFHSHLLV--PAS 436
Query: 498 SNIKTD 503
I D
Sbjct: 437 DLINKD 442
Score = 53.9 bits (129), Expect = 2e-07
Identities = 65/374 (17%), Positives = 112/374 (29%), Gaps = 139/374 (37%)
Query: 12 LRTLMNRTNLITDVQEAQSAMATILNE-SKVGLDLE-----GMDLG--VDGKVS------ 57
LR L +++ V + A L+E + LD E G+++ ++ +
Sbjct: 173 LRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 58 LVSLALQNGKIFIFDVYSCPLI--------MFDGKLHEVLESDRILKVIHGAFGDAGGLL 109
L+S+ SCPLI + KL + + GA G + GL+
Sbjct: 231 LLSIP-----------ISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLV 278
Query: 110 S-----------NFNIRLKNVYDTQCAFTALQLSDPRLL-----SQDLVPHTIGLNDLLK 153
+ +F A+ + L + P+T
Sbjct: 279 TAVAIAETDSWESFF---------VSVRKAITV----LFFIGVRCYEAYPNT-------- 317
Query: 154 FYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLL---YAAADVESLLALFHRMTKEYAL 210
+ P+ + +++N E P S ML V+ +
Sbjct: 318 --SLPPSILEDSLEN--NEGV------P--SPMLSISNLTQEQVQDYVNKT--------- 356
Query: 211 KQNRLL-LDNLIYETLFN----HVV---P-----LNIRKRRQFR---QNQLR---RWRKD 251
N L + +L N VV P LN+ R+ +Q R RK
Sbjct: 357 --NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK- 413
Query: 252 LMSSKR------PY--PYIEEVNSNEYIWRNDYNVPLANAKLLNNPINRMFH-------- 295
L S R P+ + + NV NAK + P+ +
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDIQIPV---YDTFDGSDLR 469
Query: 296 KEKESANEERIEVI 309
S +E ++ I
Sbjct: 470 VLSGSISERIVDCI 483
Score = 32.7 bits (74), Expect = 0.64
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 796 SYRASITIPERSW-------DRFIETFHQTCDLYKSAECSTSRPE 833
S + +P S+ ++F + + + + + + T+ E
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.030
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 231 PLNIRKRRQFRQNQLRRWRKDLMSSKRPYPYIEEVNSNEYIWRNDYNVPLANAKLLNNPI 290
P +IRK R+ ++ +L+ D S + E+ + W + + K+ N
Sbjct: 84 PESIRKWREEQRKRLQ--ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 291 NRMFHKEKES 300
++ F+++ ++
Sbjct: 142 DKAFYQQPDA 151
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene,
replication block, mutagenesis, transferase/electron
transport/DNA complex; HET: DNA 2DT 8FG; 2.10A
{Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB:
1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A*
1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A*
1zyq_A* 2ajq_A*
Length = 698
Score = 36.0 bits (83), Expect = 0.060
Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 11/141 (7%)
Query: 94 ILKVIHGAFGDAGGLLSNFNIRLKNVYDTQCA----FTALQLSDPRLLSQDLVPHTI-GL 148
L + L F++ +N DT + L+ +D LL +P +
Sbjct: 68 ALTKLAKLQ-----LNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAW 122
Query: 149 NDLLKFYKIS-PNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207
L K ++FK+ ++ E + +M+ Y DV AL ++ +
Sbjct: 123 GYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182
Query: 208 YALKQNRLLLDNLIYETLFNH 228
+ ++ Y T ++
Sbjct: 183 KHYFPPEIDFTDVGYTTFWSE 203
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 33.7 bits (78), Expect = 0.30
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 21 LITDVQEAQSAMATILNESKVGLDLEGMDLG-VDGKVSLVSLALQNGKIFIFDVYSCPLI 79
L + + K L +E ++ D + +++ ++G+ F+
Sbjct: 12 LAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPE----TA 67
Query: 80 MFDGKLHEVLESDRILKVIHGAFGDAGGLLSNFNIRLKNV-YDTQCA 125
+ D + L + K + + A L I L V +D A
Sbjct: 68 LADPQFVAWLGDETKKKSMFDSKRAA-VALKWKGIELCGVSFDLLLA 113
>2lqv_A Protein YEBF; secretion, protein transport; NMR {Escherichia coli}
Length = 105
Score = 30.1 bits (67), Expect = 1.0
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 237 RRQFRQNQLRRWRKDLMSSKRPYPYIEEVNSNEYIWRND-YNVPL 280
+R ++QN++ RW D + P + V+ + ++D ++VPL
Sbjct: 27 KRDYQQNRVARWADDQKIVGQADP-VAWVSLQDIQGKDDKWSVPL 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.2
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 172 ENPHIWKTRPLTSDMLLYAAADVESLLALFHRMTKE 207
E + K L + + LY A D LA+ + T E
Sbjct: 18 EKQALKK---LQASLKLY-ADDSAPALAI--KATME 47
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium
thermocellum}
Length = 215
Score = 30.3 bits (68), Expect = 2.4
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 140 DLVPHTIGLNDLLKFYKISPNNFKKNIQNLYRENPHIWKTRPLTSDMLLYAAADVESLLA 199
D+V IG NDLL ++ I ++ P++ +D + A ++ A
Sbjct: 85 DVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKPNV---TLFVADYYPWPEA-IKQYNA 140
Query: 200 LFHRMTKEYALKQNRLLL 217
+ + ++ A ++
Sbjct: 141 VIPGIVQQKANAGKKVYF 158
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library,
clone:A230045M11...; FTHFSDC1, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 71
Score = 27.4 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 223 ETLFNHVVPLNIRKRRQFRQNQLRRWRK 250
+ L+N +VPL + R+F + QL R +K
Sbjct: 13 KALYNRLVPL-VNGVREFSEIQLSRLKK 39
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; HET: MSE; 2.00A {Agrobacterium
tumefaciens str}
Length = 232
Score = 28.6 bits (63), Expect = 7.5
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 133 DPRLLSQ---DLVPHTIGLNDLLKFYKISPNNFKKNIQNL 169
+ L DLV +G ND+ + ++ L
Sbjct: 93 EVALSCHMPLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRL 132
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 28.9 bits (65), Expect = 7.6
Identities = 13/135 (9%), Positives = 37/135 (27%), Gaps = 18/135 (13%)
Query: 250 KDLMSSKRPYPYIEEVNSNEYIWRNDYNVPLANA---KLLNNPINRMFHKEKESANEERI 306
+L ++ YI N + +VP N+ + ++ +
Sbjct: 301 VNLYANAADVDYIAGTNDMDGHLFVGMDVPAINSNKQDVTEEDFYKLVSGLTVTKGLRGA 360
Query: 307 EVIDTKMYQCFNKKFYFDIKQSKSTKFIKISEVNMDQTRNQIHISMSVVGHLRDHLNALL 366
+ + S+ T+ + ++ D I + + H +
Sbjct: 361 QATY------EVYTEPWAQDSSQETRKKTMVDLETD-----ILFLIPTKIAVAQHKS--- 406
Query: 367 TAHQNTPRHRYRDTH 381
++ + Y +
Sbjct: 407 -HAKSANTYTYLFSQ 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.133 0.370
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,008,974
Number of extensions: 735449
Number of successful extensions: 1531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1498
Number of HSP's successfully gapped: 66
Length of query: 843
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 741
Effective length of database: 3,853,851
Effective search space: 2855703591
Effective search space used: 2855703591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)