BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5652
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
H+RTHTGE+P+KCEFC ++A K++L+ H+ H+
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
Y C C Y +S + +H+R H+ ERPFKC+ C +++ + S L +H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 32 SSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
SS + C CG D++K H+R HTG +P+KC+ C ++A S+L H+ +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
+ C C Y NS ++ H+R+HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVK 86
Y+C +CG +K+HIRTHT RP+ C +C S +K NL H+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG + + RH RTHTGE+P+KC C S + ++NL+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG SD + H RTHTGE+P+KC C S + K +L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG D + H RTHTGE+P+KC C S + + L +H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG ++ H RTHTGE+P+KC C S + + NL H
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG ++ H RTHTGE+P+ C C S + ++L+ H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG S +++H RTHTGE+P+KC C S + S+L+ H
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
Y C +CG S +++H RTHTGE+P+KC C S + +L H HQN
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT-HQN 85
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P+KC C S + SNL+ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRT 26
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 35 LYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMV 85
++VC +CG S ++KRH HTGE+PF+C F C + NL+ H+ +
Sbjct: 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 51 MKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMV 85
++ H+R HTG+RP+ C F C +NLK HI+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +CG +S + +H RTHTGE+P+KC+ C + +S+L H V
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
C + SD + RH R HTG +PF+C C S + +L +H M +HQN
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH-MKRHQN 100
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 48 SDRMKRHIRTHTGERPFKCEF 68
S +K H+RTHTGE+P+KC +
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTW 50
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
+ C C + SD + HIRTHTGE+PF C+ C K H ++H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
CG+ SD + RH R HTG RPF+C+ C + + +L +H+
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEF 68
CG S +K H+RTHTGE+P+ C++
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDW 40
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
CG+ SD + RH R HTG RPF+C+ C + + +L +H+
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 86
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEF 68
CG S +K H+RTHTGE+P+ C++
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDW 41
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
SD + RHIR HTG++PF+C C + + +L HI
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C CG + MK+H HTGE+P KC+ C + + SNL H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ C CG S + H+ H+ RP+ C++C KS++K H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC----AHSATSKSNLKMHIMVK 86
+ C C + SD + HIRTHTGE+PF C+ C A S K + K+H+ K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 51 MKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ RHIR HTG++PF+C C + + +L HI
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC----AHSATSKSNLKMHIMVK 86
+ C C + SD + HIRTHTGE+PF C+ C A S K + K+H+ K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
SD + RHIR HTG++PF+C C + + +L HI
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC----AHSATSKSNLKMHIMVK 86
+ C C + SD + HIRTHTGE+PF C+ C A S K + K+H+ K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 47 NSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
S + RHIR HTG++PF+C C + + +L HI
Sbjct: 18 RSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC----AHSATSKSNLKMHIMVK 86
+ C C + SD + HIRTHTGE+PF C+ C A S K + K+H+ K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 47 NSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+S + RHIR HTG++PF+C C + + +L HI
Sbjct: 18 DSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC----AHSATSKSNLKMHIMVK 86
+ C C + SD + HIRTHTGE+PF C+ C A S K + K+H+ K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 47 NSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
S + RHIR HTG++PF+C C + + +L HI
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMVKHQND 90
CG S+ +K H RTHTGE+PFKCEF C + S+ K H+ V H +D
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV-HTSD 148
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 50 RMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
++ HIR HTGE+PF C F C NLK+H
Sbjct: 77 KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
SD + RHIR HTG++PF+C C + + +L HI
Sbjct: 18 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ C C + SD + HIRTHTGE+PF C+ C K H +
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
SD + RHIR HTG++PF+C C + + +L HI
Sbjct: 19 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ C C + SD + HIRTHTGE+PF C+ C K H +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQNDFV 92
RTH+GE+P++C C T +KMHI+ KH +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA 44
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 25 SNMPRPDSSHL--YVCF--KCGYHQYNSDRMKRHIRTHTGERPFKCEF 68
S+ P+ DSS + ++C CG + S +K H RTHTGE+PF C +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSW 52
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG S + +H R HTGE+P+KC C + + S L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
SD++KRH R HTG +PF+C+ C + +LK H
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
+ C C SD +K H RTHTGE+PF C + + K + +V+H N
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRW---PSCQKKFARSDELVRHHN 117
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 54 HIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
H R HTGE+P++C+F C + LK H
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 27 MPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
M RP + + C + + N D HIR HTG++PF+C C + + +++L HI
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDT---HIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 51 MKRHIRTHTGERPFKCEFCA 70
+ HIRTHTGE+PF C+ C
Sbjct: 50 LNAHIRTHTGEKPFACDICG 69
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 7 RQLLPMDADFILGHCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
R+L P A ++L R +P C K N +K H+R+HTGE+P+ C
Sbjct: 44 RELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLEN---LKTHLRSHTGEKPYMC 100
Query: 67 EFCAHSATSKSNLKMHIMVKHQN 89
E H SK+ KHQN
Sbjct: 101 E---HEGCSKAFSNASDRAKHQN 120
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 48 SDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMVKH 87
SDR K RTH+ E+P+ C+ C T S+L+ H+ H
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQNDF 91
+VC C + +KRH R+HT E+P+ C C + T + L H H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 27 MPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
M RP + + C + + N D HIR HTG++PF+C C + + + L HI
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDT---HIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 51 MKRHIRTHTGERPFKCEFCA 70
+ +HIRTHTGE+PF C+ C
Sbjct: 50 LNQHIRTHTGEKPFACDICG 69
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
++C CG H S + H RTHT ERP+ C+ C + + +L+ H +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 1 MVCIFCRQLLPMDADFILGHCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTG 60
+C FC + + ++ +R RP Y C C D ++ H H+
Sbjct: 18 FICKFCGRHFTKSYNLLIH--ERTHTDERP-----YTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
E+PFKC+ C L +H + Q
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
Y C +C + H HTGE+P++C C +NLK H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQNDFV 92
RTHTGE+P+ C C + K L MH H +FV
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFV 44
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE--RPFKCEFCAHSATSKSNLKMHIMVKHQN 89
Y C CG DRM H+R+H G +P+ C+ C + +L HI H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 51 MKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
+ RH +H+GE+P+ C C K + H+
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHV 55
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 32 SSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
S ++ C C ++ H+ +HTGE P+KC C+ K +L+ H++ H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 51 MKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+K H R HTGE+PF+C C K NL H
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 32 SSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
S + C CG ++ + RH R H G RP C C +S + H+ V HQN
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV-HQN 57
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+PFKC C ++ SKSNLK H M +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAH-MNRHSTE 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 51 MKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
++ H R H +RPFKC +C+ SNL H+ H +
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + ++ RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 36 YVCFKCGYHQYNSDRMKRHIR-THTGERPFKCEFCAHSATS 75
Y+C CG D + HI+ HT ERP KC+ +S
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C + + SNLK HI KH +
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P+KCE C SK NL MH V
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 36 YVCFKCGYHQYNSD-RMKRHIRTHTGERP 63
Y C KCG YNS + H + HTGERP
Sbjct: 13 YKCEKCG-KGYNSKFNLDMHQKVHTGERP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + ++ RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKC--EFCAHSATSKSNLKMHIMV 85
Y+C CG + +++ H+ HTGE+PF C E C TS +L H +
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 57
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 51 MKRHIRTHTGERPFKC--EFCAHSATSKSNLKMHI 83
+ RH THTGE+ F C + C T+K+N+K H
Sbjct: 51 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y+C +CG + RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C + SNLK HI KH +
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKE 29
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C + SNLK HI KH +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKC--EFCAHSATSKSNLKMHIMV 85
Y+C CG + +++ H+ HTGE+PF C E C TS +L H +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 51 MKRHIRTHTGERPFKC--EFCAHSATSKSNLKMHI 83
+ RH THTGE+ F C + C T+K+N+K H
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+PFKC+ C S +S L H MV
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMV 34
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
YVC CG S + RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C + SNLK HI KH +
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKE 29
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
YVC C + ++RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 59 TGERPFKCEFCAHSATSKSNLKMHIMV 85
+G+RPF C C + T+K+N H+ V
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKV 29
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 38 CFKCGYHQYNSDRMKRHIRTHTGER 62
C +CG S +KRH+R H+GE+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 41 CGYHQYNSDRMKRHIRTHTGER 62
CG SD ++RH RTHTGE+
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C SNLK HI KH +
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P+KCE C + NL MH V
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRV 34
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + +++ H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 35 LYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
LY C +CG + + RH+ H G RP+ C C K +L H+ +
Sbjct: 10 LYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCA 70
Y C CG + H++ HTG +P++C CA
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA 72
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + + H+RTHTGE+P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C CG S ++ H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 41 CGYHQYNSDRMKRHIRTHTGERP 63
CG+ SD + RH R+H+G +P
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 32 SSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
S+ ++C CG + +RH+R + F C++C + S L HI H ++
Sbjct: 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
+ C +CG S ++ H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 61 ERPFKCEFCAHSATSKSNLKMH 82
E+P+KC C S T KS L++H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIH 31
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P++C C S T KS L +H +
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQI 34
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + + H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 57 THTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ T E+PF+C+ C S +S L H M+
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMI 34
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y+C CG + + +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
ERP+ C C + T +SNL +KHQ
Sbjct: 10 ERPYICTVCGKAFTDRSNL-----IKHQ 32
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P++C+ C + + K +L +HI V
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRV 33
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + +H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG ++ + RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+P+KCE C ++L+ H+++
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLI 33
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
HTGER ++C C S + + HI H D
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + + +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 62 RPFKCEFCAHSATSKSNLKMHI 83
+P+KC C++++ K+NL +H+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHL 29
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
+ C C SD +K H RTHTGE+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMV 85
E+PFKCE C T S L H V
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
+ C +CG + ++ H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG ++ +H R HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + + H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 59 TGERPFKCEFCAHSATSKSNLKMHIMV 85
T E+P+KC C + ++SNL H ++
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVI 34
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 37 VCFKCGYHQYNSDRMKRHIRTHTGERP 63
VC +CG S + +H R H+GE+P
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
YVC +CG + + H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG S R+ +H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 59 TGERPFKCEFCAHSATSKSNLKMH 82
+GE+P++C+ C S + + +L +H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH 29
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
+ C +CG Y + + H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG + ++ +H + HTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 61 ERPFKCEFCAHSATSKSNLKMH 82
E+P+KC C + T KS L +H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIH 31
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 59 TGERPFKCEFCAHSATSKSNLKMHIMV 85
+GE+P+ C C + T KS L +H V
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGV 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.139 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,767,498
Number of Sequences: 62578
Number of extensions: 93650
Number of successful extensions: 501
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 294
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 45 (21.9 bits)