RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5652
(92 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 54.4 bits (132), Expect = 8e-12
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
C +C Y + ++ H R H +RPFKC +C+ SNL H M K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 41.7 bits (99), Expect = 8e-07
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+ + P KC C++S +SK+ L++H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
Score = 29.0 bits (66), Expect = 0.064
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C C + + +H++ G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 51.8 bits (125), Expect = 1e-10
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 52 KRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
RTH+GE+P++C C T +KMHI+ KH
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 47.1 bits (113), Expect = 7e-09
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE--RPFKCEFCAHSATSKSNLKMHIMVKH 87
Y C+ C S MK HI E F C C KS+L +H+ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 26.3 bits (59), Expect = 0.60
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRT-HTGERPF 64
+ C C + H+R H+ P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 50.1 bits (119), Expect = 4e-10
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
Y+C +CG +K+HIRTHT RP+ C +C S +K NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 26.6 bits (58), Expect = 0.37
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
Y C C + + +H+++ +
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 48.2 bits (115), Expect = 3e-09
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHT---GERPFKCEFCAHSATSKSNLKMHIMVKH 87
C CG+ + H R H F CEFC ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 37.8 bits (88), Expect = 3e-05
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
+G +CE C + K++L H KH
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWH-QRKH 30
Score = 24.7 bits (54), Expect = 3.3
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C CG D + H +
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 46.3 bits (111), Expect = 1e-08
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C C + SD + HIRTHTGE+PF C+ C K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 37.9 bits (89), Expect = 3e-05
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
+ C CG SD KRH P + + +L+ +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEV 78
Score = 25.5 bits (57), Expect = 1.5
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 36 YVCFKCG---YHQYNSDRMKRHIRTHTGER 62
+ K Y+ + ++ GER
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVGER 88
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 45.9 bits (110), Expect = 2e-08
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C C + SD + HIRTHTGE+PF C+ C K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 44.0 bits (105), Expect = 1e-07
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
S + RHIR HTG++PF+C C + + +L HI
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 28.6 bits (65), Expect = 0.11
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
+ C CG SD KRH + H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 44.9 bits (107), Expect = 4e-08
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRT--HTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
Y C C + RH T + + C FC T K N+ H+ + H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 42.2 bits (100), Expect = 5e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
T GE ++C+ C+ T SN H + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 45.7 bits (109), Expect = 4e-08
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
SD + RH R HTG +PF+C C S + +L +H M +HQN
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH-MKRHQN 100
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 45.0 bits (107), Expect = 5e-08
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
SD + RHIR HTG++PF+C C + + +L HI
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 45.1 bits (108), Expect = 5e-08
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C CG D++K H+R HTG +P+KC+ C ++A S+L H
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
Score = 43.6 bits (104), Expect = 2e-07
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C C Y +S + +H+R H+ ERPFKC+ C +++ + S L +H
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 35.5 bits (83), Expect = 3e-04
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 57 THTGERPFKCEFCAHSATSKSNLKMH 82
+ P KCE C + K LK H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH 27
Score = 35.1 bits (82), Expect = 4e-04
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C C Y NS ++ H+R+HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 44.8 bits (107), Expect = 1e-07
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
SD++KRH R HTG +PF+C+ C + +LK H
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 42.9 bits (102), Expect = 5e-07
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
+ C C SD +K H RTHTGE+PF C + C L H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 26.7 bits (60), Expect = 0.63
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 59 TGERPFKCE--FCAHSATSKSNLKMH 82
+ +RPF C C S+L+MH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.9 bits (102), Expect = 2e-07
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+VC C + +KRH R+HT E+P+ C C + T + L H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.8 bits (104), Expect = 2e-07
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
Y C C R+KRH + H G K + C+ + + H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 44.5 bits (106), Expect = 2e-07
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 36 YVCFKCGYHQYN-----SDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHI 83
+VC G + + H+R HTGE+P KC F C S + NLK H+
Sbjct: 35 FVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 41.8 bits (99), Expect = 3e-06
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 52 KRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMVKH 87
K H+R+HTGE+P+ CE C+ + ++ S+ H H
Sbjct: 86 KTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 38.7 bits (91), Expect = 4e-05
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 48 SDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHI 83
SDR K RTH+ E+P+ C+ C T S+L+ H+
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 8/56 (14%)
Query: 36 YVCFKCGYHQYNSDRMKRHI---RTHTGERPFKCEFCAHSATSK-----SNLKMHI 83
C + +++ HI H + F C + S + L +H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 26.4 bits (59), Expect = 0.97
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 61 ERPFKCEFCAHSATSKSNLKMHIMVKH 87
E + + C+ S+ L HI +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 42.5 bits (101), Expect = 6e-07
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
SD + RH R HTG RPF+C+ C + + +L +H
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
Score = 24.4 bits (54), Expect = 3.3
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMHI 83
T C + T S+LK H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHL 27
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 41.0 bits (97), Expect = 6e-07
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+P+KCE C ++L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 30.2 bits (69), Expect = 0.010
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C CG ++ H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 40.9 bits (97), Expect = 7e-07
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ GE+P+ CE C LK H+ +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 34.0 bits (79), Expect = 4e-04
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C CG + +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 41.7 bits (99), Expect = 7e-07
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 32 SSHL------------YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNL 79
H Y C +C + H HTGE+P++C C +NL
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANL 61
Query: 80 KMH 82
K H
Sbjct: 62 KTH 64
Score = 27.4 bits (62), Expect = 0.25
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C CG +K H R H+GE+P+
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 42.9 bits (102), Expect = 8e-07
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
+VC +CG S ++KRH HTGE+PF+C F C + NL+ H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 39.0 bits (92), Expect = 2e-05
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 52 KRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMV 85
+ H+R HTG+RP+ C F C +NLK HI+
Sbjct: 81 RTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 35.6 bits (83), Expect = 5e-04
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 39 FKCGYHQ-----YNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
C + ++ M++H+ TH G R C C + S LK H +V
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV 56
Score = 29.8 bits (68), Expect = 0.057
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 52 KRHIRTHTGERPFK 65
K HI TH + +
Sbjct: 111 KSHILTHAKAKNNQ 124
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 42.1 bits (100), Expect = 1e-06
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
C CG + + RH +H+GE+P+ C C K + H
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 38.6 bits (91), Expect = 2e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE--RPFKCEFCAHSATSKSNLKMHI 83
Y C CG DRM H+R+H G +P+ C+ C + +L HI
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 31.7 bits (73), Expect = 0.007
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMH 82
+G CE C +L H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH 26
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 1e-06
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C + T KS L +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 32.1 bits (74), Expect = 0.002
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG + H ++HTGER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 42.1 bits (100), Expect = 2e-06
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C C ++ H+ +HTGE P+KC C+ K +L+ H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 41.3 bits (98), Expect = 2e-06
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
C C + +K H R HTGE+PF+C C K NL H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 36 YVCFKCG---YHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C KCG + + N + + E+ F C C + + L++H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 32.5 bits (75), Expect = 0.006
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMH 82
+G +C C SK LK+H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 41.9 bits (99), Expect = 2e-06
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 38 CFKCGYHQYNSDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
FK Y + HIR HTGE+PF C F C NLK+H
Sbjct: 71 SFKAKYK------LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 40.3 bits (95), Expect = 9e-06
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 52 KRHIRTHTGERPFKCEF--CAHSATSKSNLKMHIMV 85
K H RTHTGE+PFKCEF C + S+ K H+ V
Sbjct: 109 KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 39.2 bits (92), Expect = 2e-05
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 40 KCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
G + + + C + ++ L H+ ++H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 37.7 bits (88), Expect = 1e-04
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 9/59 (15%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSA---------TSKSNLKMHIMV 85
C + H+ P + + +K L HI V
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Score = 32.6 bits (75), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 39 FKCGYHQ-----YNSDRMKRHIRTHTGERPFKC 66
FKC + NS K+H+ HT ++
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 40.9 bits (97), Expect = 3e-06
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
++C CG H S + H RTHT ERP+ C+ C + + +L+ H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 39.3 bits (93), Expect = 1e-05
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C C D ++ H H+ E+PFKC+ C L +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 39.3 bits (93), Expect = 1e-05
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
++ F C+FC T NL +H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIH 36
Score = 30.1 bits (69), Expect = 0.032
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG S + H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PF+C C + +KSNL +H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 33.2 bits (77), Expect = 0.001
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +C + H RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 3e-06
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KCE C SK NL MH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C KCG + + H + HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ + E+P+KCE C + NL MH
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 30.9 bits (71), Expect = 0.007
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG + H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 4e-06
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+PFKCE C T S L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + ++ H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 5e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C S T KS L++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 32.5 bits (75), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG R++ H + HTGER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGERP+ C C + T +SNL H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 32.1 bits (74), Expect = 0.003
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y+C CG + + +H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 39.7 bits (94), Expect = 5e-06
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C CG + MK+H HTGE+P KC+ C + + SNL H
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 39.7 bits (94), Expect = 6e-06
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ C CG S + H+ H+ RP+ C++C KS++K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 39.1 bits (92), Expect = 5e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ G P+KC C S + K L +H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +C R+ H R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 39.0 bits (92), Expect = 7e-06
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG S + +H R HTGE+P+KC C + + S L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 35.9 bits (84), Expect = 1e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
H+GE+P+ C C + + S L H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 26.3 bits (59), Expect = 0.54
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C +CG + + H R HT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 7e-06
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GER +C C SN H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 29.4 bits (67), Expect = 0.025
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C CG + +H R HTGE+P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.2 bits (90), Expect = 8e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG +P+ C C + SKS L +H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 33.2 bits (77), Expect = 9e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
YVC +CG + + H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 8e-06
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+ +KC C + S+L++H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +C + ++ H H GE+P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 39.0 bits (92), Expect = 8e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG +S + +H RTHTGE+P+KC+ C + +S+L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 38.2 bits (90), Expect = 2e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
R R +KC+ C S + S+L H
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 27.4 bits (62), Expect = 0.23
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFK 65
Y C +CG + H R HTG P
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 8e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+P+ C C + +SKS L +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 33.7 bits (78), Expect = 6e-04
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + H+RTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 9e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE PF C C T K+NL +H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
++C +CG + + H + HTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 38.3 bits (90), Expect = 9e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PF+C C S + S L H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG S ++ H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 40.9 bits (97), Expect = 9e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG + + RH RTHTGE+P+KC C S + ++NL+ H
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 40.5 bits (96), Expect = 1e-05
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG SD + H RTHTGE+P+KC C S + K +L H
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
Score = 40.5 bits (96), Expect = 1e-05
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG D + H RTHTGE+P+KC C S + + L +H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 40.1 bits (95), Expect = 2e-05
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
Y C +CG ++ H RTHTGE+P+ C C S + ++L+ H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 27.4 bits (62), Expect = 0.52
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
Y C +CG D + H RTHTG++
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 9e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PFKC+ C S +S L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 33.2 bits (77), Expect = 9e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C CG R+ RH HT E+P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG +P+ C CA + + KS L +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 32.1 bits (74), Expect = 0.002
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +C ++ H R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C + K+NL H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 30.6 bits (70), Expect = 0.008
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + +H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 39.0 bits (92), Expect = 1e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
RTHTGE+P+ C C + K L MH
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
Score = 37.9 bits (89), Expect = 3e-05
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC 69
+VC KCG + M RH G + E
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 34.8 bits (81), Expect = 4e-04
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE----RPFKCEFCAHSATSKSNLKMH 82
Y C C + H + + F C C + T ++ + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C + T +SNL H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+ CE C + S L+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 32.1 bits (74), Expect = 0.003
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + +++ H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 38.3 bits (90), Expect = 1e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 36 YVCFKCGYHQYNSDRMKRHI-RTHTGERPFKCEFC 69
Y+C CG D + HI + HT ERP KC+
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 33.3 bits (77), Expect = 0.001
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
+ + +P+ C+ C + +L HI H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 37.9 bits (89), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG++PF+C C S +K NL H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 31.4 bits (72), Expect = 0.004
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C CG + H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 37.9 bits (89), Expect = 1e-05
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+P++C+ C + + K +L +H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 29.5 bits (67), Expect = 0.023
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C +CG + HIR HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGER ++C C + KS L MH
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PFKC C + +S L +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 32.1 bits (74), Expect = 0.002
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + H + HTGE+P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PF+C+ C + + +L H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 33.7 bits (78), Expect = 6e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + S + +H+R+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.8 bits (89), Expect = 1e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C + +KSNL +H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 30.9 bits (71), Expect = 0.006
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +C + H RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG+RP++C C + +KS+L H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 32.5 bits (75), Expect = 0.001
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P+KC C + +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 31.7 bits (73), Expect = 0.004
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H R HTGE+
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 38.7 bits (91), Expect = 1e-05
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKCEFC 69
+ C CG +K H++ H+ R + CEF
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 34.8 bits (81), Expect = 4e-04
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 58 HTGERPFKCEF--CAHSATSKSNLKMHIMVKH 87
+G C+F C +++ L H +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P+KC C T S+L H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 30.5 bits (70), Expect = 0.009
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + + H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C+ C+ + T K++L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C C + +H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG +P+ C C + + S+L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y+C +CG + H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC+ C S S+L +H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C C + H R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGERP KC C S ++L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 31.3 bits (72), Expect = 0.004
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG S + +H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PFKC C S + +L H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 30.6 bits (70), Expect = 0.009
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + +H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 37.6 bits (88), Expect = 2e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+ C+ C S S L H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + +H R H+GE+P
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C S T KS L +H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 31.0 bits (71), Expect = 0.006
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG ++ H + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P KC C + KS L MH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 32.5 bits (75), Expect = 0.001
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
C +CG ++ H RTH ++
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KCE C + +L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 33.3 bits (77), Expect = 7e-04
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+PFKCE C + S H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 33.3 bits (77), Expect = 8e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG Y + + H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG ++ + RH R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG + F+C C + T KS L MH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG + H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 2e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C + ++S+L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 37.1 bits (87), Expect = 2e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P++C C + KS L +H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 30.2 bits (69), Expect = 0.011
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H RTH G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C T S+L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C S KS L +H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG ++ H R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+ C C S KS+L H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 32.9 bits (76), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y+C +CG + RH R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ G++ FKC C + T S+L +H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 30.6 bits (70), Expect = 0.010
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +C S + H R HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GERPFKC C +S+L H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + H+R H+ E+
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 38.2 bits (90), Expect = 3e-05
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
Y C CG + H++ HTG +P++C CA + + H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 37.8 bits (89), Expect = 5e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
RH+ H G RP+ C C K +L H
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 34.7 bits (81), Expect = 8e-04
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+G++ + C+ C S T KS H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRH 28
Score = 33.6 bits (78), Expect = 0.002
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNL 79
H + + ++ + T S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGP 107
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 36.9 bits (86), Expect = 3e-05
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 48 SDRMKRHIRTHTGERPFKCE 67
SD + RH R+H+G +P
Sbjct: 27 SDELSRHRRSHSGVKPSGPS 46
Score = 36.1 bits (84), Expect = 6e-05
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 54 HIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
+ TGE+PF C + C + L H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRH 33
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C + + S L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + ++ RH R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 3e-05
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+PF+CE C T S+L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 31.0 bits (71), Expect = 0.007
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + + H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGER ++C C + KS L MH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 31.3 bits (72), Expect = 0.004
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+ +KC+ C + S+L+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 31.0 bits (71), Expect = 0.005
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG S ++ H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P +C C S + S L +H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 30.6 bits (70), Expect = 0.010
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + ++ H R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P+KC C + ++L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + H R HTG RP
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+PF C C + + L H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 31.3 bits (72), Expect = 0.004
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C CG + + +H R HTGE+P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C + + SNL H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 30.6 bits (70), Expect = 0.008
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+ +KC C + S L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 31.0 bits (71), Expect = 0.006
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + ++ +H + HTGE+P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C T S+L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 30.5 bits (70), Expect = 0.011
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P+ C C + + KS L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 32.1 bits (74), Expect = 0.002
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE P++C C + + K L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG ++ H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+PFKC+ C + +L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 30.5 bits (70), Expect = 0.008
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG + + H+R HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+ C C + T +SNL H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y+C +CG + +H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-05
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C + + +S+L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 30.2 bits (69), Expect = 0.013
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+ + C+ C S + L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + + +H R H+GE+P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C S+L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 30.9 bits (71), Expect = 0.007
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + RH HTGE+P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-05
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+P+ C++C + + L H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
YVC CG S + RH R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.4 bits (85), Expect = 6e-05
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ + + +C C T KS+L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 28.7 bits (65), Expect = 0.049
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C +CG + +H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 37.0 bits (86), Expect = 6e-05
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 52 KRHIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
K H RTHTGE+PF C + C L H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 28.9 bits (65), Expect = 0.077
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 48 SDRMKRHIRTHTGERPFKCEF--CAHSATSKSNLKMHI 83
S + R C C + S+LK H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT 39
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 38.3 bits (90), Expect = 7e-05
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
Y C C R+KRH + H G K + C+ + + H+ HQ
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 37.6 bits (88), Expect = 1e-04
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 52 KRHIRTHTGERPFKCE--FCAHSATSKSNLKMH 82
RH THTGE+ F C+ C T+K+N+K H
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
Score = 36.8 bits (86), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 52 KRHIRTHTGERPFKC--EFCAHSATSKSNLKMH 82
K H +HT + P++C E C + S LK H
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 34.5 bits (80), Expect = 0.002
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 54 HIRTHTGERPFKCEF--CAHSATSKSNLKMH 82
+ + C F C + L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
Score = 31.4 bits (72), Expect = 0.021
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGER--PFKCEF--CAHSATSKSNLKMH 82
+ C C MK+H + + C F C + + LK+H
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 37.3 bits (86), Expect = 8e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 38 CFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
C + G ++ HIR HTGE+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 25.7 bits (56), Expect = 1.5
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 57 THTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
+ + C + ++ L H+ ++H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.1 bits (83), Expect = 8e-05
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCA 70
C CG + + RH +H+GE+P+ +
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 25.7 bits (56), Expect = 0.74
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
+ + CE C +L H +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 8e-05
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GE+ C+ C + S L++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 27.6 bits (62), Expect = 0.15
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
+ C +CG + ++ H R H GE+
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 8e-05
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC+ C + S+L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 30.9 bits (71), Expect = 0.007
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C CG S + +H H+GERP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 9e-05
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +G++P++C+ C + +L H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 31.0 bits (71), Expect = 0.006
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +C + +H R HTGER
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 9e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C C + + + +L +H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 30.6 bits (70), Expect = 0.008
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C CG + + H R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE+P++C C S + L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 32.5 bits (75), Expect = 0.002
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG S R+ +H THT E+P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 1e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C + S+ H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 32.6 bits (75), Expect = 0.002
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG ++ +H R HTG+RP
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 35.2 bits (82), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE P++C C + K L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 30.5 bits (70), Expect = 0.009
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG D++ H +TH+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 35.2 bits (82), Expect = 1e-04
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C+ C + + ++L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 30.6 bits (70), Expect = 0.009
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + + +H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+ C C + ++L H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 30.9 bits (71), Expect = 0.006
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C CG S + +H+R HT E
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P++C+ C + + ++L H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 31.3 bits (72), Expect = 0.005
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C C + + +H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.9 bits (81), Expect = 2e-04
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ T + + C C + T +L H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 24.1 bits (53), Expect = 2.9
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + RH + HT +
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C T S+L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 30.5 bits (70), Expect = 0.008
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 34.9 bits (81), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE P+ C C S T + +L +H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 28.4 bits (64), Expect = 0.058
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFK 65
Y+C +CG + H R+ + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.8 bits (81), Expect = 2e-04
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG++P++C C + ++L H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 28.3 bits (64), Expect = 0.071
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIR-THTGERPFKC 66
Y C +CG + + RH R HTGE+P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 36.3 bits (83), Expect = 2e-04
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
K + TG F+C+ C+ + + L +H
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
Score = 33.6 bits (76), Expect = 0.002
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 29 RPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
R D+ + + + ++ KC +C HS S +L +H M+K +
Sbjct: 46 RDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH-MIKTK 104
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 2e-04
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG +P++C C + + S L H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 31.7 bits (73), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + ++ RH R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 2e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TG++P+KC C T S+L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 30.9 bits (71), Expect = 0.006
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + RH HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ TGE+P+KC C T S+L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 31.0 bits (71), Expect = 0.006
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCE 67
Y C +CG + + RH R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 3e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMHI 83
R TG +PF+C C S + +L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ +GERP+ C C + S+L H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 33.3 bits (77), Expect = 8e-04
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG + + H++ H E+
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 34.0 bits (79), Expect = 4e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+GE P++C C + K L H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 33.3 bits (77), Expect = 8e-04
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +CG D++ H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 33.7 bits (78), Expect = 5e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+GE+PF C C + +SKS L +H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 32.1 bits (74), Expect = 0.002
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
+ C C + + H +TH E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.9 bits (76), Expect = 0.001
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+G+R ++C+ C S K +L +H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 27.5 bits (62), Expect = 0.12
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
Y C +CG + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.7 bits (75), Expect = 0.002
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMH 82
+GE+P+ C C + + + L H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 28.4 bits (64), Expect = 0.059
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKC 66
Y C +C +++R+ +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.002
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 36 YVCFKCGYHQYNS-DRMKRHIRT-HTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
VC C + +K+H+ + KC+ C SK+ L H M +H
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 32.5 bits (74), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+ GE PFKC C T ++ L H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 22.9 bits (49), Expect = 8.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERP 63
+ C KC + + +H RTH +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 33.3 bits (75), Expect = 0.002
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 36 YVCFKCGYHQYNS-DRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
C C + + +K+H+ + F C C S + +K H+M H +
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 31.9 bits (72), Expect = 0.005
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 47 NSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
+S + + H G+R KC C +S L
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 25.4 bits (55), Expect = 1.4
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 21 CKRCSNMPRPDSSHL----YVCFKCGYHQYNSDRMKRHIRTHTGERPF 64
C +C + S+ +C KC + + +G++
Sbjct: 21 CSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 24.6 bits (53), Expect = 2.9
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
C KCG + T + + CE C + ++ L
Sbjct: 19 QKCSKCG-------IIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKD 58
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 32.2 bits (72), Expect = 0.008
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKH 87
+VC C +S +K+HIR E C C TS + H+ KH
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 25.3 bits (54), Expect = 2.8
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 29 RPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
R + + S + R F C C +S +LK HI
Sbjct: 41 RLIRAIVKTLIHNPQLLDESSYLYRL-LASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH 99
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.5 bits (73), Expect = 0.010
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 28 PRPDSSHLYVCFKCGYHQYNSDRMKRHIRTH 58
P S H Y C C ++ + H+ +H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;
zinc ribbon, crotonase superfamily, spiral domain;
1.98A {Staphylococcus aureus}
Length = 285
Score = 32.1 bits (74), Expect = 0.014
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 21 CKRCSNM-PRPD-SSHLYVCFKCGYH 44
C +C + + + +L VCF C +H
Sbjct: 33 CPKCKKIMYTKELAENLNVCFNCDHH 58
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.016
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMHIMV 85
+G+RPF C C + T+K+N H+ V
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.9 bits (69), Expect = 0.017
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 18 LGHCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRT-HTGER---PFKCEFCAHSA 73
+ H N Y C C + + + H+ + H + C C
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 74 TSKSNLKMHIMVKH 87
L H + H
Sbjct: 61 KRYDALSEHNLKYH 74
Score = 25.5 bits (55), Expect = 1.8
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 48 SDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQN 89
+ + E ++C++C + H+ +H N
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPN 44
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc
ribbon, crotonase superfamily, spiral domain, ligase;
3.20A {Escherichia coli} SCOP: c.14.1.4
Length = 304
Score = 31.4 bits (72), Expect = 0.024
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 21 CKRCSNMP-RPD-SSHLYVCFKCGYH 44
C C + R + +L VC KC +H
Sbjct: 27 CDSCGQVLYRAELERNLEVCPKCDHH 52
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 31.2 bits (70), Expect = 0.027
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 13/60 (21%)
Query: 14 ADFILGHCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSA 73
A+ ++ + +Y+C CGY T E P C C
Sbjct: 117 AELYRKAKEKAEKGEDIEIKKVYICPICGY-------------TAVDEAPEYCPVCGAPK 163
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.7 bits (65), Expect = 0.035
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 48 SDRMKRHIRTHTGER 62
SD ++RH RTHTGE+
Sbjct: 17 SDELQRHKRTHTGEK 31
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 30.7 bits (69), Expect = 0.036
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 38 CFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC 69
C CG Y K + H + KC+ C
Sbjct: 147 CIGCG-KVYPPQVFKSKLAEHPIKDFVKCDVC 177
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.7 bits (63), Expect = 0.038
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ ++C++C + SNLK HI KH +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 30.5 bits (69), Expect = 0.044
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 38 CFKCGYHQYNSDRMKRHIRTHTGERPFKCEFC 69
C CG Y K + H + KC+ C
Sbjct: 139 CIGCG-KVYPPQVFKSKLAEHPIKDFVKCDVC 169
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 28.4 bits (64), Expect = 0.050
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
+VC C + +KRH R+HT E+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.061
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+PFKC C ++ SKSNLK H M +H +
Sbjct: 8 KPFKCSLCEYATRSKSNLKAH-MNRHSTE 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.1 bits (64), Expect = 0.089
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 34 HLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ VC C ++ + + H + + C C + S ++ H + H +
Sbjct: 41 NAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 28.2 bits (62), Expect = 0.33
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 25 SNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSA 73
+++ PD ++C CGY H GE KC C
Sbjct: 161 NDIDAPDDDKFHLCPICGY-------------IHKGEDFEKCPICFRPK 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.36
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 20 HCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKR 53
S+ P Y G+H N + +R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 27.6 bits (61), Expect = 0.41
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 60 GERPFKCEFCAHSATSKSNLKMHIMVKHQNDF 91
G + C FC S H ++HQ +
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEHQFNI 43
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 0.48
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 59 TGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
+ +P+KC C++++ K+NL +H + KH +
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVH-LRKHTGE 35
Score = 25.6 bits (55), Expect = 0.64
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
Y C +C Y + H+R HTGE+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.8 bits (57), Expect = 0.57
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 41 CGYHQYNSDRMKRHIRTHTGER 62
CG + ++ H+R HTGER
Sbjct: 16 CGKVYGKTSHLRAHLRWHTGER 37
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 26.2 bits (57), Expect = 1.5
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 14/55 (25%)
Query: 20 HCKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGER-PFKCEFCAHSA 73
+ + + + + C CGY H G P C CAH
Sbjct: 140 RNIKEGRVFLREQATKWRCRNCGY-------------VHEGTGAPELCPACAHPK 181
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 24.7 bits (53), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
YVC C + ++RH+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 26.4 bits (58), Expect = 1.6
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 17/68 (25%)
Query: 12 MDADFILGH------CKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFK 65
M+ D ++ H +R M D+ +++C CG + F+
Sbjct: 1133 MERDCMIAHGAASFLKERL--MEASDAFRVHICGICGLMTVIAKLNHNQ---------FE 1181
Query: 66 CEFCAHSA 73
C+ C +
Sbjct: 1182 CKGCDNKI 1189
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 25.9 bits (56), Expect = 2.0
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 27 MPRPDSSHLYVCFKCGYHQYNSDRMKRHIRT 57
P + YVC C + H+R+
Sbjct: 109 TPIV-NPSSYVCNVCNARFSTMSALSEHLRS 138
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.5 bits (52), Expect = 2.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 58 HTGERPFKCEFCAHSATSKSNLKMHIMVKHQ 88
+GE+P+ C C K + H+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 2.5
Identities = 8/27 (29%), Positives = 8/27 (29%), Gaps = 4/27 (14%)
Query: 21 CKRCSNMPRP----DSSHLYVCFKCGY 43
C C P S VC CG
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALCGL 50
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 25.2 bits (56), Expect = 2.9
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 3 CIFCRQLLPMDADFILG---HCKRCSNMPRPD 31
C Q+L D HC + RP
Sbjct: 116 CSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH 147
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 24.1 bits (52), Expect = 3.3
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 28 PRPDSSHLYVCF--KCGYHQYNSDRMKRHIRTHTGER 62
+ + C C ++ HI+TH +R
Sbjct: 11 VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 25.2 bits (56), Expect = 3.5
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 3 CIFCRQLLPMDADFILG---HCKRCSNMPRPD 31
C C +++ + C +C ++ RP
Sbjct: 124 CTSCNNSFEVESAPKIPPLPKCDKCGSLLRPG 155
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein
structure initiative; 2.70A {Staphylococcus
saprophyticus subsp}
Length = 199
Score = 25.0 bits (55), Expect = 3.5
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 11 PMDADFILGHCKRCSNMPRPDSSHLYVC 38
F++G+ + PD+ L V
Sbjct: 88 DFTPKFVVGYVETKD--KHPDADKLSVL 113
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.2 bits (49), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 32 SSHLYVCFKCGYHQYNSDRMKRHI 55
S HLY C +C Y + +KRH+
Sbjct: 6 SGHLYYCSQCHYSSITKNCLKRHV 29
Score = 22.8 bits (48), Expect = 7.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 64 FKCEFCAHSATSKSNLKMHIMVKHQN 89
+ C C +S+ +K+ LK H++ KH N
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKHSN 35
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 24.1 bits (52), Expect = 9.5
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 18/68 (26%)
Query: 12 MDADFILGH------CKRCSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFK 65
M+ D + H +R D+ + VC CG S + + ++
Sbjct: 1122 MERDCQISHGCSSVLRERL--FDCSDAYRVIVCDICGLIAIASYK----------KDSYE 1169
Query: 66 CEFCAHSA 73
C C +
Sbjct: 1170 CRSCQNRT 1177
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.139 0.479
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,358,720
Number of extensions: 64944
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 392
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (23.7 bits)