RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5652
         (92 letters)



>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 45.0 bits (107), Expect = 8e-09
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQND 90
          RTH+GE+P++C  C    T    +KMHI+ KH  +
Sbjct: 1  RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35



 Score = 22.6 bits (49), Expect = 2.6
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          Y C+ C      S  MK HI     E
Sbjct: 9  YECYICHARFTQSGTMKMHILQKHTE 34


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 40.8 bits (96), Expect = 3e-07
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 56 RTHTGERPFKCEFCAHSATSKSNLKMHIMVKHQNDF 91
          RTHTGE+P+ C  C  +   K  L MH    H  +F
Sbjct: 1  RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36



 Score = 26.2 bits (58), Expect = 0.15
 Identities = 4/26 (15%), Positives = 7/26 (26%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          Y C  C         +  H + +   
Sbjct: 9  YACSHCDKTFRQKQLLDMHFKRYHDP 34


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 40.1 bits (94), Expect = 6e-07
 Identities = 9/33 (27%), Positives = 13/33 (39%)

Query: 53 RHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
          R        R +KC+ C  S +  S+L  H   
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34



 Score = 28.6 bits (64), Expect = 0.016
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          Y C +CG    +S  + +H RTHTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 38.9 bits (91), Expect = 2e-06
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 54 HIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
            R  TG +PF+C  C  S +   +L +H   
Sbjct: 2  STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33



 Score = 22.4 bits (48), Expect = 4.1
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTG 60
          + C  C      SD +  H + H  
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHML 36


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 37.4 bits (87), Expect = 6e-06
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGERPFKCEF 68
          + C    CG        +K H++ H+  R + CEF
Sbjct: 2  FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36


>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 39

 Score = 37.7 bits (88), Expect = 6e-06
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 36 YVCFKCGYHQYNSDRMKRHIR-THTGERPFKCE 67
          Y+C  CG      D +  HI+  HT ERP KC+
Sbjct: 6  YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38



 Score = 31.1 bits (71), Expect = 0.002
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 59 TGERPFKCEFCAHSATSKSNLKMHIMVKH 87
          +  +P+ C+ C    +   +L  HI   H
Sbjct: 1  SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 36.1 bits (84), Expect = 2e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 58 HTGERPFKCEFCAHSATSKSNLKMH 82
          H+GE+P+ C  C  + +  S L  H
Sbjct: 2  HSGEKPYGCVECGKAFSRSSILVQH 26



 Score = 30.7 bits (70), Expect = 0.002
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          Y C +CG     S  + +H R HTGE
Sbjct: 8  YGCVECGKAFSRSSILVQHQRVHTGE 33


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 31.5 bits (72), Expect = 0.001
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
          + C +C      SD + +HI+TH  ++
Sbjct: 3  FACPECPKRFMRSDHLSKHIKTHQNKK 29



 Score = 25.0 bits (55), Expect = 0.39
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 62 RPFKCEFCAHSATSKSNLKMHIMV 85
          + F C  C        +L  HI  
Sbjct: 1  KKFACPECPKRFMRSDHLSKHIKT 24


>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 35

 Score = 31.3 bits (71), Expect = 0.002
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 58 HTGERPFKCEFCAHSATSKSNLKMHIMV 85
           +G+RPF C  C  + T+K+N   H+ V
Sbjct: 2  SSGKRPFVCRICLSAFTTKANCARHLKV 29



 Score = 25.1 bits (55), Expect = 0.30
 Identities = 7/26 (26%), Positives = 10/26 (38%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          +VC  C           RH++ HT  
Sbjct: 8  FVCRICLSAFTTKANCARHLKVHTDT 33


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 30.7 bits (70), Expect = 0.002
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
          +VC  C       + +KRH R+HT E+
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRSHTNEK 29



 Score = 26.0 bits (58), Expect = 0.12
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 62 RPFKCEFCAHSATSKSNLKMHIMV 85
          R F CE C  +   + +LK H   
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHYRS 24


>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 29.4 bits (65), Expect = 0.008
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQND 90
          + ++C++C   +   SNLK HI  KH  +
Sbjct: 1  KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29


>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
          {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 36

 Score = 27.7 bits (62), Expect = 0.030
 Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 13/43 (30%)

Query: 31 DSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSA 73
          D    ++C  CGY              H GE   KC  C    
Sbjct: 1  DDDKFHLCPICGY-------------IHKGEDFEKCPICFRPK 30


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 31

 Score = 27.3 bits (61), Expect = 0.041
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGER 62
          ++C    CG     SD ++RH RTHTGE+
Sbjct: 3  FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 21.5 bits (46), Expect = 8.1
 Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 2/23 (8%)

Query: 62 RPFKC--EFCAHSATSKSNLKMH 82
          RPF C   +C    T    L+ H
Sbjct: 1  RPFMCTWSYCGKRFTRSDELQRH 23


>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 28

 Score = 27.5 bits (61), Expect = 0.043
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
          Y+C +CG        +K+HIRTHT  R
Sbjct: 2  YICEECGIRAKKPSMLKKHIRTHTDVR 28


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 27.2 bits (61), Expect = 0.053
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 61 ERPFKCEFCAHSATSKSNLKMH 82
          ++PF+C  C  + +   +L  H
Sbjct: 1  QKPFQCRICMRNFSRSDHLTTH 22



 Score = 27.2 bits (61), Expect = 0.054
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTG 60
          + C  C  +   SD +  HIRTHTG
Sbjct: 4  FQCRICMRNFSRSDHLTTHIRTHTG 28


>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 27.3 bits (60), Expect = 0.054
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 61 ERPFKCEFCAHSATSKSNLKMHI 83
          ERPFKC+ C +++ + S L +H+
Sbjct: 1  ERPFKCQICPYASRNSSQLTVHL 23



 Score = 24.2 bits (52), Expect = 0.70
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          + C  C Y   NS ++  H+R+HTG+
Sbjct: 4  FKCQICPYASRNSSQLTVHLRSHTGD 29


>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 29

 Score = 26.9 bits (59), Expect = 0.059
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 62 RPFKCEFCAHSATSKSNLKMHIMVKHQN 89
          RPFKC +C+      SNL  H+   H +
Sbjct: 1  RPFKCNYCSFDTKQPSNLSKHMKKFHGD 28


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 26.8 bits (59), Expect = 0.092
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGER 62
           +   C         ++ HI+TH  +R
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQTHLEDR 47



 Score = 25.3 bits (55), Expect = 0.39
 Identities = 6/37 (16%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 51 MKRHIRTHTGERPFKCEFCA--HSATSKSNLKMHIMV 85
          + ++++    ++ F+C F     +   + N++ HI  
Sbjct: 7  IDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42


>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 53

 Score = 27.0 bits (59), Expect = 0.12
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMHIMV 85
          Y C +CG    +  +  RH+  H G RP+ C  C      K +L  H+ +
Sbjct: 4  YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52



 Score = 22.3 bits (47), Expect = 6.3
 Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)

Query: 61 ERPFKCEFCAHSATSKSNLKMHIMVKHQNDF 91
          ++ + C+ C  S T KS    H+ +      
Sbjct: 1  DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP 30


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 30

 Score = 26.1 bits (58), Expect = 0.14
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGE 61
          + C    C       + +K H+R+HTGE
Sbjct: 3  HKCTFEGCRKSYSRLENLKTHLRSHTGE 30



 Score = 21.9 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 62 RPFKC--EFCAHSATSKSNLKMH 82
          +P KC  E C  S +   NLK H
Sbjct: 1  KPHKCTFEGCRKSYSRLENLKTH 23


>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 37

 Score = 25.8 bits (57), Expect = 0.16
 Identities = 10/39 (25%), Positives = 12/39 (30%), Gaps = 13/39 (33%)

Query: 35 LYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSA 73
          +Y+C  CGY             T   E P  C  C    
Sbjct: 5  VYICPICGY-------------TAVDEAPEYCPVCGAPK 30


>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 25.4 bits (55), Expect = 0.27
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTGE 61
          +VC +CG     S ++KRH   HTGE
Sbjct: 3  HVCAECGKAFVESSKLKRHQLVHTGE 28


>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase
          carboxyl transferase subunit beta, AccD {Escherichia
          coli [TaxId: 562]}
          Length = 263

 Score = 26.3 bits (57), Expect = 0.49
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)

Query: 21 CKRCSNM-PRPD-SSHLYVCFKCGYH 44
          C  C  +  R +   +L VC KC +H
Sbjct: 5  CDSCGQVLYRAELERNLEVCPKCDHH 30


>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 121

 Score = 26.0 bits (57), Expect = 0.51
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 61 ERPFKCEFCAHSATSKSNLKMHIMVKHQNDF 91
           +   C FC     S      H  ++HQ + 
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNI 43


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 29

 Score = 23.4 bits (51), Expect = 1.2
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 2/27 (7%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTG 60
          Y C    C      S  + RHIR HTG
Sbjct: 3  YACPVESCDRRFSRSADLTRHIRIHTG 29


>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 23.5 bits (51), Expect = 1.3
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGE 61
          + C    CG        ++ H+R HTG+
Sbjct: 3  FQCTFEGCGKRFSLDFNLRTHVRIHTGD 30


>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 32

 Score = 23.4 bits (51), Expect = 1.4
 Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)

Query: 36 YVC--FKCGYHQYNSDRMKRHIRTHTGE 61
          Y C    C      +  + RH ++H  +
Sbjct: 4  YSCDHPGCDKAFVRNHDLIRHKKSHQEK 31



 Score = 22.7 bits (49), Expect = 2.3
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 61 ERPFKCEF--CAHSATSKSNLKMH 82
          +RP+ C+   C  +     +L  H
Sbjct: 1  DRPYSCDHPGCDKAFVRNHDLIRH 24


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 274

 Score = 24.7 bits (54), Expect = 1.6
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 10  LPMDADFILGHCKRCSNMPRPDSSHLYVCFKCGYH 44
           L  +AD I G  K  S +   D +     F  GYH
Sbjct: 71  LHPEADLISGDVKPFSMVEGLDDTFRGALF-LGYH 104


>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.7 bits (49), Expect = 2.6
 Identities = 7/19 (36%), Positives = 8/19 (42%)

Query: 41 CGYHQYNSDRMKRHIRTHT 59
          C      S  +K HI TH 
Sbjct: 10 CNKKFAQSTNLKSHILTHA 28


>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
           562]}
          Length = 172

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 6/59 (10%), Positives = 20/59 (33%)

Query: 24  CSNMPRPDSSHLYVCFKCGYHQYNSDRMKRHIRTHTGERPFKCEFCAHSATSKSNLKMH 82
            +N+P+ D       F+    +  +  M +   +   +     +       +  ++K+ 
Sbjct: 50  TNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVP 108


>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 28

 Score = 22.4 bits (47), Expect = 3.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 62 RPFKCEFCAHSATSKSNLKMHIMV 85
          +P+KC+ C ++A   S+L  H+ +
Sbjct: 2  KPYKCKTCDYAAADSSSLNKHLRI 25


>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
          1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 22.5 bits (48), Expect = 4.5
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 35 LYVCFKCGYHQYNSDRMKRH-IRTHTGERPFK 65
           YVC +C +     D +  H ++ H GE  FK
Sbjct: 6  SYVCVECNFLTKRYDALSEHNLKYHPGEENFK 37


>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.8 bits (47), Expect = 4.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 62 RPFKCEFCAHSATSKSNLKMH 82
          +P+KC  C  + +  S L  H
Sbjct: 1  KPYKCLECGKAFSQNSGLINH 21


>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 35

 Score = 21.9 bits (46), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 38 CFKCGYHQYNSDRMKRHIRTHTGERPF 64
          C  CG    +   + RH  +H+GE+P+
Sbjct: 8  CEICGKIFRDVYHLNRHKLSHSGEKPY 34


>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 32

 Score = 21.5 bits (45), Expect = 7.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 36 YVCFKCGYHQYNSDRMKRHIRTHTG 60
          Y C  CG      DRM  H+R+H G
Sbjct: 4  YSCPVCGLRFKRKDRMSYHVRSHDG 28


>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 26

 Score = 21.6 bits (45), Expect = 7.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 63 PFKCEFCAHSATSKSNLKMHI 83
          P KCE C    + K  LK H+
Sbjct: 1  PHKCEVCGKCFSRKDKLKTHM 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.139    0.479 

Gapped
Lambda     K      H
   0.267   0.0467    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,010
Number of extensions: 14941
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 88
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.5 bits)