BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5653
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 280/384 (72%), Gaps = 1/384 (0%)
Query: 357 IDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLG 416
GT R Q LE EVE++GAHLNAY+SRE T +Y K L +DVPKAVE+LADI+QN L
Sbjct: 64 FKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLE 123
Query: 417 QAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLL 476
++IE+ER VI+RE+QE +T+++EVVF++LHATAFQGT L ++ GP++NI+ L R DL
Sbjct: 124 DSQIEKERDVIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLT 183
Query: 477 DYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVR 536
+Y++ Y RMVL+ AGGV+H L++LA++HFG V P D V + CR+TGS +R
Sbjct: 184 EYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGGV-PFTYDDDAVPTLSKCRFTGSQIR 242
Query: 537 VRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQG 596
R+D +PLAHVA+AVEG GW D + L VAN +IG +DR+ G G +++S LA+I
Sbjct: 243 HREDGLPLAHVAIAVEGPGWAHPDLVALQVANAIIGHYDRTYGGGLHSSSPLASIAVTNK 302
Query: 597 FAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLK 656
SFQ+F+ CY +TGL+G YFV DRM ++DM F +Q +W+RLC +++ +EV R KN L+
Sbjct: 303 LCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCTSISESEVLRGKNFLR 362
Query: 657 SNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVV 716
+ L LDGTTPVCEDIGR++L YGRR+PL E E R+ +V A+ + EVC+KYI+D+CP V
Sbjct: 363 NALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYIYDQCPAV 422
Query: 717 AAVGPTEQLPDYTWLRQSMYWIRF 740
A GP EQLPDY +R M+W+RF
Sbjct: 423 AGPGPIEQLPDYNRIRSGMFWLRF 446
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 286 KIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYG 345
++ +DM F +Q +W+RLC +++ +EV R KN L++ L LDGTTPVCEDIGR++L YG
Sbjct: 328 RMSIDDMMFVLQGQWMRLCTSISESEVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYG 387
Query: 346 RRVPLHELEARI 357
RR+PL E E R+
Sbjct: 388 RRIPLEEWEERL 399
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 52/71 (73%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A A+ +VP TQV+ +DNG+RVA+E S PT TVG+WIDAGSRYE++ NNG +FLEH
Sbjct: 2 AYYAQALQSVPETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEH 61
Query: 70 MAFKLVMGRGQ 80
+AFK R Q
Sbjct: 62 LAFKGTKNRPQ 72
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/382 (54%), Positives = 274/382 (71%), Gaps = 1/382 (0%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT KR E EVE++GAH N YTSREQT FY K L +D+PK VE+LAD++QN L ++
Sbjct: 66 GTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEES 125
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+IE+ERGVIL+E++E++ ++ V FD+LHATAFQGT L T+ G T+NIK L R DL Y
Sbjct: 126 QIEKERGVILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASY 185
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
++ ++ RMVL+ AGG+ H LV A++HF V + A + P CR+TGS++R R
Sbjct: 186 IDTHFKAPRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILP-RCRFTGSEIRAR 244
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFA 598
DDA+P+AHVALAVEG GW DN+ L VAN +IG +DR+ G G + +SRLAA+ E
Sbjct: 245 DDALPVAHVALAVEGPGWADPDNVVLHVANAIIGRYDRTFGGGKHLSSRLAALAVEHKLC 304
Query: 599 HSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSN 658
HSFQ+FNT Y DTGL+G +FVAD + ++DM F Q EW+RLC + T +EV+RAKN L+S
Sbjct: 305 HSFQTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSA 364
Query: 659 LFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
+ QLDGTTPVCE IG +L YGRR+ L E ++RI V A+ + +VC+KYI+D+CP +AA
Sbjct: 365 MVAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAA 424
Query: 719 VGPTEQLPDYTWLRQSMYWIRF 740
VGP EQL DY +R MYWIRF
Sbjct: 425 VGPIEQLLDYNRIRSGMYWIRF 446
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP 349
+DM F Q EW+RLC + T +EV+RAKN L+S + QLDGTTPVCE IG +L YGRR+
Sbjct: 332 DDMMFCAQGEWMRLCTSTTESEVKRAKNHLRSAMVAQLDGTTPVCETIGSHLLNYGRRIS 391
Query: 350 LHELEARIDGTSKRSQTDL 368
L E ++RI R D+
Sbjct: 392 LEEWDSRISAVDARMVRDV 410
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ N+P T VT++DNGLRVA+E+S PT TVG+WI AGSRYE + NNG +F+EH
Sbjct: 2 ATYAQTLQNIPETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEH 61
Query: 70 MAFK 73
+AFK
Sbjct: 62 LAFK 65
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/385 (51%), Positives = 275/385 (71%), Gaps = 3/385 (0%)
Query: 357 IDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLG 416
GT R LE EVE++GAHLNAY++RE T +Y K L +D+PKAVE+LADI+QN L
Sbjct: 98 FKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLE 157
Query: 417 QAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLL 476
++IE+ER VIL+E+QE +T++++VVF++LHATAFQGTPL ++ GP++N++ L R DL
Sbjct: 158 DSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLT 217
Query: 477 DYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPP-NVDCAGVVPPAHCRYTGSDV 535
+Y++ Y+ RMVL+ AGG++H L+ LA++HF + + D + P CR+TGS +
Sbjct: 218 EYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSP--CRFTGSQI 275
Query: 536 RVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ 595
R+D +PLAHVA+AVEG GW DN+ L VAN +IG +D + G G + +S LA+I A
Sbjct: 276 CHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATN 335
Query: 596 GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLL 655
SFQ+FN CY DTGL G +FV D M ++DM F +Q +W+RLC + T +EV R KNLL
Sbjct: 336 KLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLL 395
Query: 656 KSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPV 715
++ L LDGTTPVCEDIGR +L YGRR+PL E E+RI +V A+ + EVC+KY +D+CP
Sbjct: 396 RNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPA 455
Query: 716 VAAVGPTEQLPDYTWLRQSMYWIRF 740
VA GP EQLPDY +R M+W+RF
Sbjct: 456 VAGFGPIEQLPDYNRIRSGMFWLRF 480
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP 349
+DM F +Q +W+RLC + T +EV R KNLL++ L LDGTTPVCEDIGR +L YGRR+P
Sbjct: 366 DDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 425
Query: 350 LHELEARI 357
L E E+RI
Sbjct: 426 LAEWESRI 433
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+WIDAGSRYE++ NNG +F+EH
Sbjct: 36 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 95
Query: 70 MAFKLVMGR 78
+AFK R
Sbjct: 96 LAFKGTKNR 104
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/383 (52%), Positives = 275/383 (71%), Gaps = 3/383 (0%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R LE EVE++GAHLNAY++RE T +Y K L +D+PKAVE+LADI+QN L +
Sbjct: 66 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS 125
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+IE+ER VIL+E+QE +T++++VVF++LHATAFQGTPL ++ GP++N++ L R DL +Y
Sbjct: 126 QIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 185
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPP-NVDCAGVVPPAHCRYTGSDVRV 537
++ Y+ RMVL+ AGG++H L+ LA++HF + + D + P CR+TGS +
Sbjct: 186 LSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSP--CRFTGSQICH 243
Query: 538 RDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGF 597
R+D +PLAHVA+AVEG GW DN+ L VAN +IG +D + G G + +S LA+I A
Sbjct: 244 REDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKL 303
Query: 598 AHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKS 657
SFQ+FN CY DTGL G +FV D M ++DM F +Q +W+RLC + T +EV R KNLL++
Sbjct: 304 CQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRN 363
Query: 658 NLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVA 717
L LDGTTPVCEDIGR +L YGRR+PL E E+RI +V A+ + EVC+KY +D+CP VA
Sbjct: 364 ALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVA 423
Query: 718 AVGPTEQLPDYTWLRQSMYWIRF 740
GP EQLPDY +R M+W+RF
Sbjct: 424 GFGPVEQLPDYNRIRSGMFWLRF 446
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP 349
+DM F +Q +W+RLC + T +EV R KNLL++ L LDGTTPVCEDIGR +L YGRR+P
Sbjct: 332 DDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 391
Query: 350 LHELEARI 357
L E E+RI
Sbjct: 392 LAEWESRI 399
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+WIDAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 70 MAFKLVMGR 78
+AFK R
Sbjct: 62 LAFKGTKNR 70
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 200/383 (52%), Positives = 275/383 (71%), Gaps = 3/383 (0%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R LE EVE++GAHLNAY++RE T +Y K L +D+PKAVE+LADI+QN L +
Sbjct: 66 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS 125
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+IE+ER VIL+E+QE +T++++VVF++LHATAFQGTPL ++ GP++N++ L R DL +Y
Sbjct: 126 QIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 185
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPP-NVDCAGVVPPAHCRYTGSDVRV 537
++ Y+ RMVL+ AGG++H L+ LA++HF + + D + P CR+TGS +
Sbjct: 186 LSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSP--CRFTGSQICH 243
Query: 538 RDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGF 597
R+D +PLAHVA+AVEG GW DN+ L VAN +IG +D + G G + +S LA+I A
Sbjct: 244 REDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKL 303
Query: 598 AHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKS 657
SFQ+FN CY DTGL G +FV D M ++DM F +Q +W+RLC + T +EV R KNLL++
Sbjct: 304 CQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRN 363
Query: 658 NLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVA 717
L LDGTTPVCEDIGR +L YGRR+PL E E+RI +V A+ + EVC+KY +D+CP VA
Sbjct: 364 ALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVA 423
Query: 718 AVGPTEQLPDYTWLRQSMYWIRF 740
GP EQLPDY +R M+W+RF
Sbjct: 424 GFGPIEQLPDYNRIRSGMFWLRF 446
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP 349
+DM F +Q +W+RLC + T +EV R KNLL++ L LDGTTPVCEDIGR +L YGRR+P
Sbjct: 332 DDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 391
Query: 350 LHELEARI 357
L E E+RI
Sbjct: 392 LAEWESRI 399
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+WIDAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 70 MAFKLVMGR 78
+AFK R
Sbjct: 62 LAFKGTKNR 70
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 242/385 (62%), Gaps = 11/385 (2%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R Q +ELE+ENIG+HLNAYTSRE TV+YAK L++D+PKAV+IL+DI+ S L +
Sbjct: 60 GTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNS 119
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
IERER VI+RE +EV+ EVVFDHLH ++ PLG TILGP +NIKS+ R DL DY
Sbjct: 120 AIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDY 179
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVP----PAHCRYTGSD 534
+ Y+ RMVL+GAG VDH+ LV+ A+++FG+V P P CR +
Sbjct: 180 ITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCR---GE 236
Query: 535 VRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAE 594
++++ +P H+A+A+EG W + D + ++G WDR+ G+GTN+ S LA ++
Sbjct: 237 RFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQ 296
Query: 595 QG-FAHSFQSFNTCYKDTGLWGVYFVADRMQ--LEDMTFSVQHEWIRL-CKTVTPAEVER 650
G A+S+ SF+T Y D+GLWG+Y V D + + + + EW R+ ++ AEV R
Sbjct: 297 NGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNR 356
Query: 651 AKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIW 710
AK LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++D +T DI +
Sbjct: 357 AKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQ 416
Query: 711 DRCPVVAAVGPTEQLPDYTWLRQSM 735
++ + A+G T +P+ +++ + +
Sbjct: 417 NKPVSMVALGNTSTVPNVSYIEEKL 441
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 19 VPSTQVTSIDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMG 77
+P T+ + + NGL +ATE +ATVGI++DAGSR E NNG AHFLEH+AFK
Sbjct: 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 78 RGQIKPEYGPLLVELSEEQVYMHIKPNEVRQ 108
R P+ G +EL E + H+ R+
Sbjct: 64 R----PQQG---IELEIENIGSHLNAYTSRE 87
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 299 EWIRL-CKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARI 357
EW R+ ++ AEV RAK LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++
Sbjct: 340 EWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQV 399
Query: 358 DGTSK 362
D +K
Sbjct: 400 DKITK 404
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 323 bits (828), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 242/385 (62%), Gaps = 11/385 (2%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R Q +ELE+ENIG+HLNAYTSRE TV+YAK L++D+PKAV+IL+DI+ S L +
Sbjct: 60 GTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNS 119
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
IERER VI+RE +EV+ EVVFDHLH ++ PLG TILGP +NIKS+ R DL DY
Sbjct: 120 AIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDY 179
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVP----PAHCRYTGSD 534
+ Y+ RMVL+GAG VDH+ LV+ A+++FG+V P P CR +
Sbjct: 180 ITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCR---GE 236
Query: 535 VRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAE 594
++++ +P H+A+A+EG W + D + ++G WDR+ G+GTN+ S LA ++
Sbjct: 237 RFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQ 296
Query: 595 QG-FAHSFQSFNTCYKDTGLWGVYFVADRMQ--LEDMTFSVQHEWIRL-CKTVTPAEVER 650
G A+S+ SF+T Y D+GLWG+Y V D + + + + EW R+ ++ AEV R
Sbjct: 297 NGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNR 356
Query: 651 AKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIW 710
AK LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++D +T DI +
Sbjct: 357 AKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQ 416
Query: 711 DRCPVVAAVGPTEQLPDYTWLRQSM 735
++ + A+G T +P+ +++ + +
Sbjct: 417 NKPVSMVALGNTSTVPNVSYIEEKL 441
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 19 VPSTQVTSIDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMG 77
+P T+ + + NGL +ATE +ATVGI++DAGSR E NNG AHFL+H+AFK
Sbjct: 4 IPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 78 RGQIKPEYGPLLVELSEEQVYMHIKPNEVRQ 108
R P+ G +EL E + H+ R+
Sbjct: 64 R----PQQG---IELEIENIGSHLNAYTSRE 87
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 299 EWIRL-CKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARI 357
EW R+ ++ AEV RAK LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++
Sbjct: 340 EWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQV 399
Query: 358 DGTSK 362
D +K
Sbjct: 400 DKITK 404
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 180/376 (47%), Gaps = 19/376 (5%)
Query: 376 GAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK---LGQAEIERERGVILREMQ 432
G L++ SR+ + L K+++ L K L + E + +L+++Q
Sbjct: 64 GLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQ 123
Query: 433 EVETNLQ-EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
+ E N V +HLH+TAFQ TPL G +++++L DL + N + + V+
Sbjct: 124 DFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVV 183
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPA---HCRYTGSDVRVRDDAMPLAHVA 548
G G + H+ LV +++ N+ P + GS+VR+RDD +P A ++
Sbjct: 184 GTGNIKHEDLVN-------SIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWIS 236
Query: 549 LAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCY 608
LAVEG S + +A + G+++ + + +L E +F F+ Y
Sbjct: 237 LAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSY 296
Query: 609 KDTGLWGVYFVADR--MQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGT 666
KD+GLWG + A R ++D+ +W RL +VT EVERAK+LLK L +
Sbjct: 297 KDSGLWG-FSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESG 355
Query: 667 TPVCED--IGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQ 724
PV + +G ++L G ++ L E +ID +T KD+ K +WD+ +A G E
Sbjct: 356 NPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEG 415
Query: 725 LPDYTWLRQSMYWIRF 740
L DY +R M +R+
Sbjct: 416 LLDYMRIRSDMSMMRW 431
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCED--IGRQILCYGRR 347
+D+ +W RL +VT EVERAK+LLK L + PV + +G ++L G +
Sbjct: 315 DDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK 374
Query: 348 VPLHELEARIDGTS 361
+ L E +ID +
Sbjct: 375 LSLGEAFKKIDAIT 388
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 23 QVTSIDNGLRVATE-DSGAPTATVGIWIDAGSRYETDANNGVAHFLEHM 70
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI 50
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/376 (28%), Positives = 180/376 (47%), Gaps = 19/376 (5%)
Query: 376 GAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK---LGQAEIERERGVILREMQ 432
G L++ SR+ + L K+++ L K L + E + +L+++Q
Sbjct: 63 GLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQ 122
Query: 433 EVETNLQ-EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
+ E N V +HLH+TAFQ TPL G +++++L DL + N + + V+
Sbjct: 123 DFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVV 182
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPA---HCRYTGSDVRVRDDAMPLAHVA 548
G G + H+ LV +++ N+ P + GS+VR+RDD +P A ++
Sbjct: 183 GTGNIKHEDLVN-------SIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWIS 235
Query: 549 LAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCY 608
LAVEG S + +A + G+++ + + +L E +F F+ Y
Sbjct: 236 LAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSY 295
Query: 609 KDTGLWGVYFVADR--MQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGT 666
KD+GLWG + A R ++D+ +W RL +VT EVERAK+LLK L +
Sbjct: 296 KDSGLWG-FSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESG 354
Query: 667 TPVCED--IGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQ 724
PV + +G ++L G ++ L E +ID +T KD+ K +WD+ +A G E
Sbjct: 355 NPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEG 414
Query: 725 LPDYTWLRQSMYWIRF 740
L DY +R M +R+
Sbjct: 415 LLDYMRIRSDMSMMRW 430
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCED--IGRQILCYGRR 347
+D+ +W RL +VT EVERAK+LLK L + PV + +G ++L G +
Sbjct: 314 DDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK 373
Query: 348 VPLHELEARIDGTS 361
+ L E +ID +
Sbjct: 374 LSLGEAFKKIDAIT 387
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHM 70
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI 49
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 177/372 (47%), Gaps = 22/372 (5%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT+ RS ++ ++IG +NA+TS+E T +YAK L +A++ L+D+ +S +
Sbjct: 55 GTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKE 114
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
E+E+ER V+ E++ V+ ++V D L + + LG ILG + + S L Y
Sbjct: 115 ELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHY 174
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVP---PAHCRYTGSDV 535
++ FY +V+S AG V HD L+ KE F VKP + G P P
Sbjct: 175 MDRFYTGDYVVISVAGNV-HDELIDKIKETFSQVKPTTYNYQGEKPMFLPNRI------- 226
Query: 536 RVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ 595
VR AH+ L G D L++ N ++G G+ ++ I ++
Sbjct: 227 -VRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLG--------GSMSSRLFQDIREKR 277
Query: 596 GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLC-KTVTPAEVERAKNL 654
G +S S+++ ++D+G+ +Y QL+D+ +S+Q L K +T E+E K
Sbjct: 278 GLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQ 337
Query: 655 LKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCP 714
LK +L L L+ T G+ L + L E+ +I+ V +D+ + K + P
Sbjct: 338 LKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA-KILLSASP 396
Query: 715 VVAAVGPTEQLP 726
++ + +LP
Sbjct: 397 SISLINANGELP 408
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 26 SIDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
++DNG+R+ TE S + ++GIW+ GSRYE+ NG++HFLEHM FK
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK 54
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 169/353 (47%), Gaps = 31/353 (8%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G + +SRE ++ A QDV K ++++++ ++ K+ + E++ ++ E+
Sbjct: 71 LELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEI 130
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
EV + V+ + LH A+ G LG+ ++ P I S+ + LLDY N FY P V +
Sbjct: 131 DEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAA 190
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAH---CRYTGSD-----VRVRDDAMP 543
GV H+ ++L ++ G D PP +YTG + V +
Sbjct: 191 FV-GVPHEKALELTGKYLG-------DWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPE 242
Query: 544 LAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNA--SRLAA-ITAEQGFAHS 600
L H+ + EG + D L TL+G G SRL + + F +
Sbjct: 243 LFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 601 FQSFNTCYKDTGLWGVYFV--------ADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAK 652
+FN Y D+G++G+ A + + M + ++ +RL T EV RAK
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRL----TEDEVSRAK 358
Query: 653 NLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVC 705
N LKS+L + L+ ED+GRQ+L +GR++P++E+ ++I+D+ DI V
Sbjct: 359 NQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVA 411
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 307 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARID 358
+T EV RAKN LKS+L + L+ ED+GRQ+L +GR++P++E+ ++I+
Sbjct: 349 LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIE 400
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+++S+ NGL+VAT ++ + +G++IDAGSR+E G H L+ +AFK
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFK 57
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 14/350 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ ++RE + +CL+ DV +E L ++ + + E+ + + +
Sbjct: 89 IEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 148
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
N Q V ++LHA A++ L N++ P I + +L DYV + ARM L
Sbjct: 149 AVALQNPQAHVIENLHAAAYRNA-LANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALI 207
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L ++A E F N++ + +G A +Y G ++R + L H AL
Sbjct: 208 GLG-VSHPVLKQVA-EQFLNIRG-GLGLSG----AKAKYHGGEIR-EQNGDSLVHAALVA 259
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF--QSFNTCYK 609
E SA+ V ++GA + G+N S L A +G F +FN Y
Sbjct: 260 ESAAIGSAEANAFSVLQHVLGAGPHVK-RGSNATSSLYQAVA-KGVHQPFDVSAFNASYS 317
Query: 610 DTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTP 668
D+GL+G Y ++ D+ + ++ + + ++ +V+ AKN LK+ + ++ +
Sbjct: 318 DSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEG 377
Query: 669 VCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
+++G Q L G P + +ID V D+ K++ R + A+
Sbjct: 378 FLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAAS 427
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
+ T + NGL +A+ ++ AP + +G++I AGSRYE N G +H L
Sbjct: 25 EFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL 69
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 14/350 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ ++RE + +CL+ DV +E L ++ + + E+ + + +
Sbjct: 103 IEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 162
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
N Q V ++LHA A++ L N++ P I + +L DYV + ARM L
Sbjct: 163 AVALQNPQAHVIENLHAAAYRNA-LANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALI 221
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L ++A E F N++ + +G A +Y G ++R + L H AL
Sbjct: 222 GLG-VSHPVLKQVA-EQFLNIRG-GLGLSG----AKAKYHGGEIR-EQNGDSLVHAALVA 273
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF--QSFNTCYK 609
E SA+ V ++GA + G+N S L A +G F +FN Y
Sbjct: 274 ESAAIGSAEANAFSVLQHVLGAGPHVK-RGSNATSSLYQAVA-KGVHQPFDVSAFNASYS 331
Query: 610 DTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTP 668
D+GL+G Y ++ D+ + ++ + + ++ +V+ AKN LK+ + ++ +
Sbjct: 332 DSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEG 391
Query: 669 VCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
+++G Q L G P + +ID V D+ K++ R + A+
Sbjct: 392 FLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAAS 441
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
+ T + NGL +A+ ++ AP + +G++I AGSRYE N G +H L
Sbjct: 39 EFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL 83
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 161/350 (46%), Gaps = 14/350 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ ++RE + +CL+ DV +E L ++ + + E+ + + +
Sbjct: 73 IEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDK 132
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
N Q V ++LHA A++ L N++ P I + +L DYV + ARM L
Sbjct: 133 AVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALI 191
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L ++A E F N++ + +G A +Y G ++R + L H AL
Sbjct: 192 GLG-VSHPVLKQVA-EQFLNIRG-GLGLSG----AKAKYHGGEIR-EQNGDSLVHAALVA 243
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF--QSFNTCYK 609
E SA+ V ++GA + G+N S L A +G F +FN Y
Sbjct: 244 ESAAIGSAEANAFSVLQHVLGAGPHVK-RGSNATSSLYQAVA-KGVHQPFDVSAFNASYS 301
Query: 610 DTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTP 668
D+GL+G Y ++ D+ + ++ + + ++ +V+ AKN LK+ + ++ +
Sbjct: 302 DSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEG 361
Query: 669 VCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
+++G Q L G P + +ID V D+ K++ R + A+
Sbjct: 362 FLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAAS 411
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
+ T + NGL +A+ ++ AP + +G++I AGSRYE N G +H L
Sbjct: 9 EFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLL 53
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 156/351 (44%), Gaps = 16/351 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ Y++RE+ + +CL+ V +E L ++ + E+ + + +
Sbjct: 91 IEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDK 150
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
+ Q V ++LHA A++ T L N + P I + + L +V + ARM L
Sbjct: 151 AVAFQSPQVGVLENLHAAAYK-TALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALV 209
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L ++A++ N+ A Y G ++R + L H A+
Sbjct: 210 GIG-VKHSDLKQVAEQFL------NIRSGAGTSSAKATYWGGEIR-EQNGHSLVHAAVVT 261
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRL---AAITAEQGFAHSFQSFNTCY 608
EG SA+ V ++GA + G++ S+L A Q F S +FN Y
Sbjct: 262 EGAAVGSAEANAFSVLQHVLGAGPLIK-RGSSVTSKLYQGVAKATTQPFDAS--AFNVNY 318
Query: 609 KDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTT 667
D+GL+G Y ++ ++ + ++ + VT +V +AKN LK+ + ++
Sbjct: 319 SDSGLFGFYTISQAAHAGEVIRAAMNQLKAAAQGGVTEEDVTKAKNQLKATYLMSVETAQ 378
Query: 668 PVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
+ +IG + L G + +ID VT+ D+ K++ + + A+
Sbjct: 379 GLLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAAS 429
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
++T + NGL +A+ ++ +P + +G++I AGSRYET AN G AH L
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLL 71
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 156/358 (43%), Gaps = 15/358 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ ++RE + +CL+ DV +E L ++ + E+ + + +
Sbjct: 72 IEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDK 131
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
N Q V ++LHA A++ L +++ P I + +L D+V + ARM L
Sbjct: 132 AVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMALV 190
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L +A++ N+ + A +Y G ++R + L H A+
Sbjct: 191 GLG-VSHPVLKNVAEQLL------NIRGGLGLSGAKAKYRGGEIR-EQNGDSLVHAAIVA 242
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF--QSFNTCYK 609
E A+ V ++GA + G N S L A +G + F +FN Y
Sbjct: 243 ESAAIGGAEANAFSVLQHVLGANPHVK-RGLNATSSLYQAVA-KGVHNPFDVSAFNASYS 300
Query: 610 DTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTP 668
D+GL+G Y ++ + + ++ + + V+ V+ AKN LK+ + ++ +
Sbjct: 301 DSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLKAKYLMSVESSEG 360
Query: 669 VCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQLP 726
E++G Q L G P + +ID V D+ + K++ R +AA G P
Sbjct: 361 FLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFV-SRQKSMAASGNLGHTP 417
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
++T + NGL +A+ ++ +P +T+G++I AGSRYE +N G +H L
Sbjct: 8 EITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL 52
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 155/358 (43%), Gaps = 15/358 (4%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+E +G L+ ++RE + +CL+ DV +E L ++ + E+ + + +
Sbjct: 72 IEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADLQPQLKIDK 131
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
N Q V ++LHA A++ L +++ P I + +L D+V + ARM L
Sbjct: 132 AVAFQNPQTHVIENLHAAAYR-NALADSLYCPDYRIGKVTSVELHDFVQNHFTSARMALV 190
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G G V H L +A++ N+ + A +Y G ++R + L H A+
Sbjct: 191 GLG-VSHPVLKNVAEQLL------NIRGGLGLSGAKAKYRGGEIR-EQNGDSLVHAAIVA 242
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF--QSFNTCYK 609
E A+ V ++GA + G N S L A +G F +FN Y
Sbjct: 243 ESAAIGGAEANAFSVLQHVLGANPHVK-RGLNATSSLYQAVA-KGVHQPFDVSAFNASYS 300
Query: 610 DTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTP 668
D+GL+G Y ++ + + ++ + + V+ V+ AKN LK+ + ++ +
Sbjct: 301 DSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKLKAKYLMSVESSEG 360
Query: 669 VCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQLP 726
E++G Q L G P + +ID V D+ + K++ R +AA G P
Sbjct: 361 FLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFV-SRQKSMAASGNLGHTP 417
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFL 67
++T + NGL +A+ ++ +P +T+G++I AGSRYE +N G +H L
Sbjct: 8 EITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLL 52
>pdb|3EOQ|A Chain A, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
pdb|3EOQ|B Chain B, The Crystal Structure Of Putative Zinc Protease Beta-
Subunit From Thermus Thermophilus Hb8
Length = 406
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 156/345 (45%), Gaps = 21/345 (6%)
Query: 372 VENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM 431
+ GA NA+TS E TV+Y L + + + A +++ + L + + + E+ VIL E+
Sbjct: 68 FDRXGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLLRPA-LREEDFQTEKLVILEEI 126
Query: 432 QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLS 491
+ ++ A FQG PLGN++LG ++I +L R+ Y Y P VL+
Sbjct: 127 ARYQDRPGFXAYEWARARFFQGHPLGNSVLGTRESITALTREGXAAYHRRRYLPKNXVLA 186
Query: 492 GAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAV 551
G VD D L LA+ P + PP + G + R + A L VAL
Sbjct: 187 ATGRVDFDRL--LAEAERLTEAWPEGEAERAYPPLTPAF-GVEERPYEKARALYLVAL-F 242
Query: 552 EGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKD- 610
G ++ P V L+G +GSG RL ++G A SF D
Sbjct: 243 PGVAYQEEARFPGQVLAHLLG----EEGSG-----RLHFALVDKGLA-EVASFGLEEADR 292
Query: 611 TGLWGVYFVADRMQLEDMTFSVQHEWIRL-CKTVTPAEVERAKNLLKSNLFLQLDGTTPV 669
G + Y AD + ++ +Q E RL + V EVERAK L + L G TP
Sbjct: 293 AGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFA--GETPX 350
Query: 670 CE--DIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDR 712
+G + L GR + L E++AR+ VT+++++ + + ++
Sbjct: 351 QRLFHLGXEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEK 395
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 27 IDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ NGLRV E GA + +G ++ G+R ET +GV+HFLEH FK
Sbjct: 7 LRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHXVFK 54
>pdb|3AMJ|B Chain B, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|D Chain D, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 424
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 151/370 (40%), Gaps = 26/370 (7%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPK--AVEILADIIQNSKLG 416
G S + + + +IGA L ++ F + L + A+ IL DI+ +
Sbjct: 61 GKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFP 120
Query: 417 QAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLL 476
+ERER + ++E +T ++ A+ P G+ + ++ + R L+
Sbjct: 121 APVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGH--VSSVATLQKISRDQLV 178
Query: 477 DYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVR 536
+ Y V++ G + +A++ ++ P + PA R T R
Sbjct: 179 SFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADL-PAGATLPPLPDPAMPRATVE--R 235
Query: 537 VRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAA-ITAEQ 595
+ + A AH+A+ + D PL+V N +G G SRL I ++
Sbjct: 236 IANPATQ-AHIAIGMPTLKRGDPDFFPLVVGNYALG--------GGGFESRLMKEIRDKR 286
Query: 596 GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIR--LCKTVTPAEVERAKN 653
G ++ S+ + K GL+ + F R + D V ++ + L + T AE++ AK+
Sbjct: 287 GLSYGAYSYFSPQKSMGLFQIGF-ETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKD 345
Query: 654 LLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE---ARIDDVTAKDIHEVCTKYIW 710
L + L+LD + + I YG +PL L+ R+ VT + + E +++
Sbjct: 346 NLINGFALRLDSNAKILGQVA-VIGYYG--LPLDYLDHYTERVQAVTVEQVREAFARHVK 402
Query: 711 DRCPVVAAVG 720
+ VG
Sbjct: 403 RENLITVVVG 412
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 351 HELEARI-DGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADI 409
H LE + GT + V +G NA+T+R+ T +Y + + + + AD
Sbjct: 51 HALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADR 110
Query: 410 IQNSKLGQAEIERERGVILREMQ-EVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIK 468
+ N + ++E VI E + + + ++ L A ++ P ++G +I+
Sbjct: 111 MANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQ 170
Query: 469 SLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNV 512
++ QD+ D+ +Y P + G V+H+ + +LA++ +G +
Sbjct: 171 NMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKL 214
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 21 STQVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 76/164 (46%), Gaps = 2/164 (1%)
Query: 351 HELEARI-DGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADI 409
H LE + GT + V +G NA+T+R+ T +Y + + + + AD
Sbjct: 51 HALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADR 110
Query: 410 IQNSKLGQAEIERERGVILREMQ-EVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIK 468
+ N + ++E VI E + + + ++ L A ++ P ++G +I+
Sbjct: 111 MANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQ 170
Query: 469 SLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNV 512
++ QD+ D+ +Y P + G V+H+ + +LA++ +G +
Sbjct: 171 NMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKL 214
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 21 STQVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 6 STFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 13/234 (5%)
Query: 360 TSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAE 419
T+ RS L E E +G + RE A LK D+P V LAD++ + E
Sbjct: 43 TNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHE 102
Query: 420 IERERGVILR-EMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+ R + E + D L+A F+ LGN +L ++ + QD+ D+
Sbjct: 103 LTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQDIKDF 159
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
+ Y + +SG V+ D L + E + P P + G + RVR
Sbjct: 160 ADKVYTKENLEVSGENVVEAD-LKRFVDESLLSTLPAGKSLVSKSEPKF--FLGEENRVR 216
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAIT 592
+A + + V + ++AN L A S+ SG ++++L T
Sbjct: 217 FIGDSVAAIGIPVNKASLAQYE----VLANYLTSAL--SELSGLISSAKLDKFT 264
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 31 LRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQIK 82
L V+ D+ +T+ + + GSRY T +GVAH L F+ R +K
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALK 50
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 16/176 (9%)
Query: 351 HELE-ARIDGTSKRSQTDLELEVENI-GAHLNAYTSREQTVFYAKCLKQDVPKAVEILAD 408
H LE + G+ K Q D E + G NA T+ +T FY + +P AV+ LAD
Sbjct: 65 HYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLAD 124
Query: 409 IIQNSKLGQAEIERERGVILREMQEVET----NLQEVVFDHLH----ATAFQGTPLGNTI 460
I L + ERER + E+ T + +V + ++ + F G L
Sbjct: 125 AIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLS 184
Query: 461 LGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPN 516
P ++ Q L D+ +Y M L K+A + FG V PN
Sbjct: 185 DKPGNPVQ----QALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRV--PN 234
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 23 QVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAF 72
Q +DNG+ V D A + + + GS + +A G+AH+LEHM+
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSL 72
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 139 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 198
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 199 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 258
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 259 LGRESLDDLTNLVVKLFSEVENKNV 283
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 97 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 156
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 157 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 216
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 217 LGRESLDDLTNLVVKLFSEVENKNV 241
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A + ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 26/158 (16%)
Query: 337 IGRQILCYGRRVPLHELEARIDGTSKRSQTDLELEV-ENIGAHLNAYTSREQTVFYAKCL 395
+G + Y R + LH ID D +LE+ +GA L +E V + +
Sbjct: 182 LGHVAVQYARAMGLHVAAIDID--------DAKLELARKLGASLTVNARQEDPV---EAI 230
Query: 396 KQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTP 455
++D+ A +L + NS GQA RG + + + +FD +G
Sbjct: 231 QRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFD----VVLKGLH 286
Query: 456 LGNTILGPTQNIKSLQRQDLLDY-----VNAFYQPARM 488
+ +I+G ++ Q+ LD+ V A P ++
Sbjct: 287 IAGSIVGTRADL-----QEALDFAGEGLVKATIHPGKL 319
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation
pdb|2JG4|B Chain B, Substrate-Free Ide Structure In Its Closed Conformation
Length = 990
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G47|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-40)
pdb|2G48|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G48|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|2G49|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G49|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Glucagon
pdb|2G54|A Chain A, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G54|B Chain B, Crystal Structure Of Zn-Bound Human Insulin-Degrading
Enzyme In Complex With Insulin B Chain
pdb|2G56|A Chain A, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2G56|B Chain B, Crystal Structure Of Human Insulin-degrading Enzyme In
Complex With Insulin B Chain
pdb|2JBU|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|2JBU|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme
Complexed With Co-Purified Peptides.
pdb|3E50|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
pdb|3E50|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Transforming Growth Factor-Alpha
Length = 990
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Query: 380 NAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQ 439
NA+TS E T +Y + + A++ A ++ +RE + E ++ N
Sbjct: 110 NAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAVDSEHEKNVMNDA 169
Query: 440 EVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------RQDLLDYVNAFYQPARMVLSG 492
+F AT P G +++ RQ+LL + +A+Y M +
Sbjct: 170 WRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVCV 229
Query: 493 AGGVDHDTLVKLAKEHFGNVKPPNV 517
G D L L + F V+ NV
Sbjct: 230 LGRESLDDLTNLVVKLFSEVENKNV 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,568,878
Number of Sequences: 62578
Number of extensions: 787496
Number of successful extensions: 1965
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 101
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)