Query psy5653
Match_columns 740
No_of_seqs 287 out of 3306
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 23:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q2l_A Protease III; hydrolase 100.0 5.1E-53 1.8E-57 499.0 36.1 685 15-736 14-932 (939)
2 3cww_A Insulysin, insulin-degr 100.0 1.2E-48 4E-53 464.0 47.9 679 15-725 28-936 (990)
3 1pp9_A Ubiquinol-cytochrome C 100.0 4.7E-48 1.6E-52 417.6 45.7 403 336-740 42-446 (446)
4 3eoq_A Putative zinc protease; 100.0 6.4E-47 2.2E-51 403.3 46.3 387 322-723 12-405 (406)
5 3hdi_A Processing protease; CA 100.0 2.8E-46 9.6E-51 400.8 46.6 392 321-728 11-410 (421)
6 1hr6_B Beta-MPP, mitochondrial 100.0 1.3E-45 4.4E-50 398.7 50.2 412 322-735 17-441 (443)
7 2fge_A Atprep2;, zinc metallop 100.0 1E-47 3.4E-52 455.5 33.9 674 15-728 31-981 (995)
8 1hr6_A Alpha-MPP, mitochondria 100.0 1.3E-44 4.5E-49 393.2 47.2 395 336-735 34-450 (475)
9 3cx5_A Cytochrome B-C1 complex 100.0 2.9E-44 9.9E-49 387.0 44.3 409 321-740 10-431 (431)
10 3ami_A Zinc peptidase; alpha/b 100.0 2.4E-44 8.3E-49 388.4 43.1 397 322-730 17-430 (445)
11 3gwb_A Peptidase M16 inactive 100.0 1.4E-43 4.8E-48 381.9 42.8 392 321-725 23-424 (434)
12 1pp9_B Ubiquinol-cytochrome C 100.0 7.9E-43 2.7E-47 376.6 45.1 397 322-730 34-438 (439)
13 3amj_B Zinc peptidase inactive 100.0 2.5E-42 8.6E-47 370.8 44.8 391 321-725 13-417 (424)
14 3s5m_A Falcilysin; M16 metallo 100.0 1.6E-43 5.6E-48 410.6 36.1 347 359-724 770-1175(1193)
15 3d3y_A Uncharacterized protein 100.0 1.2E-38 3.9E-43 342.7 42.4 383 322-723 13-423 (425)
16 1q2l_A Protease III; hydrolase 100.0 1.3E-36 4.6E-41 358.8 37.7 393 322-725 31-442 (939)
17 3go9_A Insulinase family prote 100.0 2.4E-36 8.1E-41 327.6 36.2 375 335-732 56-458 (492)
18 2fge_A Atprep2;, zinc metallop 100.0 1.1E-35 3.6E-40 352.5 31.2 394 320-725 46-487 (995)
19 3s5m_A Falcilysin; M16 metallo 100.0 1.4E-34 4.7E-39 336.1 38.2 394 322-724 97-589 (1193)
20 3cww_A Insulysin, insulin-degr 100.0 4.4E-34 1.5E-38 338.9 35.6 392 321-723 44-456 (990)
21 3cx5_B Cytochrome B-C1 complex 100.0 6.9E-32 2.4E-36 281.5 27.3 328 336-730 20-351 (352)
22 3eoq_A Putative zinc protease; 99.9 8.7E-26 3E-30 240.1 23.0 339 22-496 2-404 (406)
23 3hdi_A Processing protease; CA 99.9 5.4E-25 1.9E-29 235.4 24.8 341 22-497 2-405 (421)
24 1pp9_A Ubiquinol-cytochrome C 99.9 2.8E-23 9.5E-28 223.7 26.8 361 15-497 7-429 (446)
25 3ami_A Zinc peptidase; alpha/b 99.9 1.3E-23 4.4E-28 226.3 23.6 345 20-496 5-422 (445)
26 1hr6_A Alpha-MPP, mitochondria 99.9 1.7E-23 5.7E-28 227.1 24.5 345 18-496 2-437 (475)
27 1hr6_B Beta-MPP, mitochondrial 99.9 3E-22 1E-26 215.7 26.6 357 18-496 3-428 (443)
28 3amj_B Zinc peptidase inactive 99.9 3.5E-21 1.2E-25 206.1 22.9 343 20-497 2-415 (424)
29 3gwb_A Peptidase M16 inactive 99.9 9.2E-22 3.2E-26 211.4 18.3 348 16-497 8-422 (434)
30 3ih6_A Putative zinc protease; 99.9 5.1E-21 1.7E-25 180.9 20.7 173 541-723 21-195 (197)
31 1pp9_B Ubiquinol-cytochrome C 99.9 7E-21 2.4E-25 204.8 22.4 341 17-496 19-430 (439)
32 3go9_A Insulinase family prote 99.8 1.8E-20 6.1E-25 203.0 16.6 162 15-180 19-240 (492)
33 3cx5_A Cytochrome B-C1 complex 99.8 3E-19 1E-23 191.6 23.3 339 23-497 2-414 (431)
34 3d3y_A Uncharacterized protein 99.7 1.6E-16 5.6E-21 169.9 21.3 329 25-495 6-421 (425)
35 3cx5_B Cytochrome B-C1 complex 99.5 3.5E-14 1.2E-18 147.4 6.9 188 31-229 1-246 (352)
36 3ih6_A Putative zinc protease; 97.7 0.00036 1.2E-08 64.7 12.6 125 368-495 59-193 (197)
37 3ov5_A VIRB7 (XAC2622), unchar 23.8 91 0.0031 22.7 3.7 43 453-495 33-75 (85)
38 1k8r_B Protein kinase BYR2; si 23.6 30 0.001 26.0 1.3 45 691-735 48-92 (110)
39 2l4w_A Uncharacterized protein 20.5 1.1E+02 0.0038 23.6 3.9 43 453-495 63-105 (120)
No 1
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=5.1e-53 Score=498.97 Aligned_cols=685 Identities=11% Similarity=0.059 Sum_probs=466.2
Q ss_pred cCCCCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-------CCCCc
Q psy5653 15 KSVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI-------KPEYG 86 (740)
Q Consensus 15 ~~~~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~-------~~~~~ 86 (740)
++.+.+.|++.+|+|||+|+ ++++..|.++++++|++||++||++.+|+|||||||+|+||++++.. ...|+
T Consensus 14 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg 93 (939)
T 1q2l_A 14 SDKDNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGG 93 (939)
T ss_dssp CTTCCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTC
T ss_pred CCCCCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCC
Confidence 56677789999999999999 88888999999999999999999999999999999999999988631 22367
Q ss_pred chhhhhhhhhh-----------------------hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCC
Q psy5653 87 PLLVELSEEQV-----------------------YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQ 131 (740)
Q Consensus 87 ~~~~~~~~~~~-----------------------~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~ 131 (740)
..||+|..|.| +|.|+++++++|+. +|.+|++. +...+++.|+
T Consensus 94 ~~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~--~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p 171 (939)
T 1q2l_A 94 SHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERN--AVNAELTMARTRDGMRMAQVSAETINPAHP 171 (939)
T ss_dssp EEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHH--HHHHHHHHHTTSHHHHHHHHHHHSSCTTSG
T ss_pred cceEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Confidence 77777755555 36666699999999 99999765 2344566788
Q ss_pred CCccccccHHHHHH----hhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccCC--
Q psy5653 132 NGRNIVLSNREIRL----LRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVISG-- 193 (740)
Q Consensus 132 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 193 (740)
+++...|+...+.. ++..++..++..+|++... +.+++.+.|+.|+.+..............
T Consensus 172 ~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ 251 (939)
T 1q2l_A 172 GSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQ 251 (939)
T ss_dssp GGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGG
T ss_pred CccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHH
Confidence 99999999999988 8899999999999986443 56677889999875432211000000000
Q ss_pred C--C--CCCCCCCccCcccCCCCCCCch-hh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhccccc-ccCCccchhh
Q psy5653 194 R--S--TPSDSGSCSGDIISPTEPLSLT-DS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQ-IKPEYGPLLV 262 (740)
Q Consensus 194 ~--~--~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 262 (740)
. . ......+..+.++++.....+. +. +.++..+||+ ++|...++ +++.++...+.... .....+.+
T Consensus 252 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~-~~gl~~~~~a~~~~~~~~~~g~f-- 328 (939)
T 1q2l_A 252 KGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQ-KQGLVEGISANSDPIVNGNSGVL-- 328 (939)
T ss_dssp SSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHH-HTTCEEEEEEEEESSTTSSEEEE--
T ss_pred cCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHH-HcCCchheeeccccccCCCceEE--
Confidence 0 0 0111234455555554444333 32 5778999986 57888886 45555544433210 01111111
Q ss_pred hhhccceeeeecCchhHHhhhhcccChhHHHHHHHHHHHhhhc-cCChhHHHHHhhhccceEEEec--------------
Q psy5653 263 ELSEEQVYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQL-------------- 327 (740)
Q Consensus 263 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~el~~~k~~l~~~~~~~~-------------- 327 (740)
.+.+.+.++.. .. .+++.+.+.++++++.. ++++.|+.+++..+...+.+..
T Consensus 329 -----~i~~~~~~~~~-~~-------~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (939)
T 1q2l_A 329 -----AISASLTDKGL-AN-------RDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADT 395 (939)
T ss_dssp -----EEEEEECHHHH-HT-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHH
T ss_pred -----EEEEEEChhhh-hh-------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHH
Confidence 33344443211 11 35666666666666554 6777766665543322111000
Q ss_pred ------cCCC---Cce----------------------eccc--------------------------------------
Q psy5653 328 ------DGTT---PVC----------------------EDIG-------------------------------------- 338 (740)
Q Consensus 328 ------d~~~---~~~----------------------~~ig-------------------------------------- 338 (740)
+... ... ..+|
T Consensus 396 ~~~~~~~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (939)
T 1q2l_A 396 MIRVPVEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIAL 475 (939)
T ss_dssp HTTSCGGGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCC
T ss_pred hhcCCHHHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCCCCcccceeCCeeeeeeCCHHHHHHHhccCccccc
Confidence 0000 000 0000
Q ss_pred ----------------------------------ceecccCCccc---hhhHHH-hhccCCCCCh---------------
Q psy5653 339 ----------------------------------RQILCYGRRVP---LHELEA-RIDGTSKRSQ--------------- 365 (740)
Q Consensus 339 ----------------------------------~~~~~~~~~~~---~~~l~~-~~~gt~~~~~--------------- 365 (740)
..|........ ...+.. +..+....+.
T Consensus 476 ~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~ 555 (939)
T 1q2l_A 476 SLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGL 555 (939)
T ss_dssp CCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 00000000000 000000 0000000011
Q ss_pred --hHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-hCCHHHHH
Q psy5653 366 --TDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEV-ETNLQEVV 442 (740)
Q Consensus 366 --~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~-~~~p~~~~ 442 (740)
.++.+.....|++++++. .+++.++++|++++++.+|+++.+.+.+|.|++++|+++|+.+++.+.+. .++|...+
T Consensus 556 g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a 634 (939)
T 1q2l_A 556 ALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQA 634 (939)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHH
T ss_pred HHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHH
Confidence 112223455688899999 99999999999999999999999999999999999999999999999876 55799999
Q ss_pred HHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCC
Q psy5653 443 FDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGV 522 (740)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~ 522 (740)
...+...++++ + ++..++.+.|++++.+++++|++++|.+.+++++|+||++.+++.++++++++.|+....+....
T Consensus 635 ~~~l~~~l~~~--~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~ 711 (939)
T 1q2l_A 635 IMPAQMLSQVP--Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRN 711 (939)
T ss_dssp HHHHHHTTSSS--C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCC
T ss_pred HHHHHHHhcCC--C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCcccccc
Confidence 88888888865 2 45557889999999999999999999999999999999999999999999998887543211110
Q ss_pred CCCCCcccCCCe-eEEeCCCCCceeE-EEEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeE
Q psy5653 523 VPPAHCRYTGSD-VRVRDDAMPLAHV-ALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAH 599 (740)
Q Consensus 523 ~~~~~~~~~~~~-~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y 599 (740)
... ....+.. .........++.+ .++++.+..+.++.+++.+|..++ +++||+.||++ |++|
T Consensus 712 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~-------------~s~lf~~LRek~gl~Y 776 (939)
T 1q2l_A 712 KDV--VVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIV-------------QPWFYNQLRTEEQLGY 776 (939)
T ss_dssp EEE--CCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHH-------------HHHHTHHHHTSCCSSS
T ss_pred ceE--EeCCCceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhCc
Confidence 000 1111222 1222222235555 666665533334455556666665 79999999986 9999
Q ss_pred EEEeecccCCCCceEEEEEEe---CCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q psy5653 600 SFQSFNTCYKDTGLWGVYFVA---DRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQ 676 (740)
Q Consensus 600 ~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 676 (740)
+|+++.....+..++.+.+++ +|+++.++++.+.+.++++.+++|++||+++|+.++.++....+++...+.++|..
T Consensus 777 ~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~ 856 (939)
T 1q2l_A 777 AVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKD 856 (939)
T ss_dssp CEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHH
T ss_pred eeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999987644444454455554 57889999999999998887789999999999999999999999999999999988
Q ss_pred HHHhCCCCC-hHHHHHHHcccCHHHHHHHHHHhcc-CCCcE--EEEEcCCC------------CCCCHHHHHHHHh
Q psy5653 677 ILCYGRRVP-LHELEARIDDVTAKDIHEVCTKYIW-DRCPV--VAAVGPTE------------QLPDYTWLRQSMY 736 (740)
Q Consensus 677 ~~~~~~~~~-~~~~~~~i~~vT~edv~~~~~~~l~-~~~~~--~~v~g~~~------------~i~~~~~~~~~~~ 736 (740)
+..++..++ .+++.+.|++||++||++++++++. +.+.. ++++|+.. .|.|+.++++.+.
T Consensus 857 i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (939)
T 1q2l_A 857 FDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMP 932 (939)
T ss_dssp HHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSHHHHCCCCCTTCEECSCHHHHHTTSC
T ss_pred HhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCCCcccccccCCCcEeCCHHHHhhcCc
Confidence 887665555 4888999999999999999999875 44454 44888853 3567777776543
No 2
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.2e-48 Score=463.97 Aligned_cols=679 Identities=9% Similarity=0.004 Sum_probs=451.3
Q ss_pred cCCCCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-------CCCCc
Q psy5653 15 KSVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI-------KPEYG 86 (740)
Q Consensus 15 ~~~~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~-------~~~~~ 86 (740)
+..+.+.|+..+|+|||+|+ ++++..++++++++|++||++||++.+|+|||||||+|+||++++.- ..-|+
T Consensus 28 ~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg 107 (990)
T 3cww_A 28 SPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAG 107 (990)
T ss_dssp CTTCCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTC
T ss_pred CCCCCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCC
Confidence 66788899999999999999 88899999999999999999999999999999999999999988641 22366
Q ss_pred chhhhhhhhhh-----------------------hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCC
Q psy5653 87 PLLVELSEEQV-----------------------YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQ 131 (740)
Q Consensus 87 ~~~~~~~~~~~-----------------------~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~ 131 (740)
..||+|..+.| +|.|+++++++|+. +|.+|++. +...+++.|+
T Consensus 108 ~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~--~V~~E~~~~~~~~~~~~~~~~~~~~~~~~p 185 (990)
T 3cww_A 108 SSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVN--AVDSEHEKNVMNDAWRLFQLEKATGNPKHP 185 (990)
T ss_dssp EEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHTSCTTSG
T ss_pred ceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHH--HHHHHHHhccCChHHHHHHHHHHhcCCCCC
Confidence 77777755554 36677788999999 99999665 2334566788
Q ss_pred CCccccccHHHHHHh-------hHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccC
Q psy5653 132 NGRNIVLSNREIRLL-------RYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVIS 192 (740)
Q Consensus 132 ~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (740)
+++...|+...+..+ +..++..++..+|++... +.+++.+.|+.|+.++.+.......+..
T Consensus 186 y~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~ 265 (990)
T 3cww_A 186 FSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQ 265 (990)
T ss_dssp GGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSC
T ss_pred cccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCC
Confidence 888888999999887 899999999999987433 4667788999987643221100000110
Q ss_pred CC-------CCCCCCCCccCcccCCCCCCCc-hhh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhcccccccCCccc
Q psy5653 193 GR-------STPSDSGSCSGDIISPTEPLSL-TDS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQIKPEYGP 259 (740)
Q Consensus 193 ~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (740)
.. ..+. ..+..+.+++....... .+. +.++..+||+ +.+...+++ ++.++...+.........+.
T Consensus 266 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~-~g~~~~~~a~~~~~~~~~~~ 343 (990)
T 3cww_A 266 EEHLKQLYKIVPI-KDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKS-KGWVNTLVGGQKAGARGFMF 343 (990)
T ss_dssp GGGSSEEEEECCS-SSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHH-TTSCSCEEEEEEEEETTEEE
T ss_pred hHHcCeEEEEEEC-CCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHH-CCCcceeeeccccCCCCccE
Confidence 00 0111 23344455554433332 233 6779999975 456556653 45554443332211111111
Q ss_pred hhhhhhccceeeeecCc---hhHHhh----------hhcccCh----------------------hHHHHHHHHHHHhhh
Q psy5653 260 LLVELSEEQVYMHIKPN---EVRQRK----------KQRKIDN----------------------EDMTFSVQHEWIRLC 304 (740)
Q Consensus 260 ~~~~l~~~~~~~~~~p~---~~~~~~----------~~~~~~~----------------------~~~~~~~~~~~~~~~ 304 (740)
+ .+.+.+.+. ...... .+..++. ......+...+....
T Consensus 344 f-------~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 416 (990)
T 3cww_A 344 F-------IINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYP 416 (990)
T ss_dssp E-------EEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSC
T ss_pred E-------EEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCC
Confidence 1 222222221 100000 0000010 001111100000000
Q ss_pred -----------ccCChhHHHHHhhhcc--ce-E-EEeccC----------------------------------------
Q psy5653 305 -----------KTVTPAEVERAKNLLK--SN-L-FLQLDG---------------------------------------- 329 (740)
Q Consensus 305 -----------~~~s~~el~~~k~~l~--~~-~-~~~~d~---------------------------------------- 329 (740)
..++.+++..+...+. +. + ++.++.
T Consensus 417 ~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p 496 (990)
T 3cww_A 417 LEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLP 496 (990)
T ss_dssp GGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCC
T ss_pred HHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCCCCCCcCcccceeCceeeeecCCHHHHHHhhcCCCCccccCC
Confidence 0112223322211111 00 0 000000
Q ss_pred --------------------CCCcee---cccceecccCCccc------------------------hhhHHHhhccCCC
Q psy5653 330 --------------------TTPVCE---DIGRQILCYGRRVP------------------------LHELEARIDGTSK 362 (740)
Q Consensus 330 --------------------~~~~~~---~ig~~~~~~~~~~~------------------------~~~l~~~~~gt~~ 362 (740)
..|... .-...|........ .+.+..++.. .
T Consensus 497 ~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~--~ 574 (990)
T 3cww_A 497 TKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKD--S 574 (990)
T ss_dssp CCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHH--H
T ss_pred CCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH--H
Confidence 000000 00001111101000 0000001111 1
Q ss_pred CChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhC-CHHHH
Q psy5653 363 RSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVET-NLQEV 441 (740)
Q Consensus 363 ~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~-~p~~~ 441 (740)
..+........|+++++.++.+++.++++|++++++.+|+++.+.+.+|.|++++|+++|+.+++.+.+... +|...
T Consensus 575 --~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~ 652 (990)
T 3cww_A 575 --LNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQH 652 (990)
T ss_dssp --HHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHH
T ss_pred --HHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHH
Confidence 122222333458899999999999999999999999999999999999999999999999999999987766 89999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHH---HHHhhCCCCCCC-C
Q psy5653 442 VFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKL---AKEHFGNVKPPN-V 517 (740)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~---v~~~~~~l~~~~-~ 517 (740)
+...+...+++ ++|. ..+..+.|++++.++|.+|++++|.+.+++++|+||++.+++.++ +.++++.++... .
T Consensus 653 a~~~~~~~l~~-~~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~ 729 (990)
T 3cww_A 653 AMYYLRLLMTE-VAWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPL 729 (990)
T ss_dssp HHHHHHHHHBS-SCCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHhCC-CCCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCC
Confidence 99999998885 4443 334778999999999999999999999999999999999998887 667777665321 1
Q ss_pred CCC--CCCCCCCcccCCCeeEE--eCCCCCceeEEEEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHH
Q psy5653 518 DCA--GVVPPAHCRYTGSDVRV--RDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITA 593 (740)
Q Consensus 518 ~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR 593 (740)
+.. +..... ....+....+ ..++..++.+.++++.+..+.++.+++.|++++| ++++|++||
T Consensus 730 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il-------------~~~lf~~LR 795 (990)
T 3cww_A 730 LPSQLAAYREV-QLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQII-------------SEPAFNTLR 795 (990)
T ss_dssp CGGGCCCCCBB-CCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHH-------------HHHHHHHHT
T ss_pred chhhccccceE-EcCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHH
Confidence 100 000000 0011222212 3455667778887877667788999999999999 689999999
Q ss_pred hc-CCeEEEEeecccCCCCceEEEEEEe--CCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhccChHHHH
Q psy5653 594 EQ-GFAHSFQSFNTCYKDTGLWGVYFVA--DRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVC 670 (740)
Q Consensus 594 ~~-gl~Y~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~s~~el~~~k~~~~~~~~~~~~~~~~~~ 670 (740)
++ |+||+|++++....+...+.+.+++ +|+++.++++.+.+.++.+.+++|++||+++|.+++.++....+++....
T Consensus 796 ek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~~~ 875 (990)
T 3cww_A 796 TKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAES 875 (990)
T ss_dssp TTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHH
T ss_pred hccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 96 9999999988765555556666665 47788999999999999887689999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-hHHHHHHHcccCHHHHHHHHHHhccC-----CCcEEEEEcCCCCC
Q psy5653 671 EDIGRQILCYGRRVP-LHELEARIDDVTAKDIHEVCTKYIWD-----RCPVVAAVGPTEQL 725 (740)
Q Consensus 671 ~~~~~~~~~~~~~~~-~~~~~~~i~~vT~edv~~~~~~~l~~-----~~~~~~v~g~~~~i 725 (740)
.++|..+..++..++ .+++.+.|+++|++||++++++++.+ ++..++|+|+...+
T Consensus 876 ~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 876 AKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC--
T ss_pred HHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcc
Confidence 999998887765555 47889999999999999999999886 67889999987643
No 3
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=4.7e-48 Score=417.57 Aligned_cols=403 Identities=50% Similarity=0.895 Sum_probs=354.6
Q ss_pred cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcCC
Q psy5653 336 DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK 414 (740)
Q Consensus 336 ~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 414 (740)
..|...++.+..+..|.++| +|.||.+++..++...++..|+.+|++++.+.+.|++++++++++.+|+++.+++.+|.
T Consensus 42 ~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~ 121 (446)
T 1pp9_A 42 DAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCS 121 (446)
T ss_dssp SCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBC
T ss_pred ccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCC
Confidence 55777777788999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEc
Q psy5653 415 LGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAG 494 (740)
Q Consensus 415 ~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G 494 (740)
|++++|+++|+.++++++...++|..++...+...+|++|||+++..|+.+.|++++.++|++||++||.|+|++++|+|
T Consensus 122 f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~G 201 (446)
T 1pp9_A 122 LEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAG 201 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEc
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCCCCCC-CCCcccCCCeeEEeCCCCCceeEEEEeecCCCCCCChHHHHHHHHhhcC
Q psy5653 495 GVDHDTLVKLAKEHFGNVKPPNVDCAGVVP-PAHCRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGA 573 (740)
Q Consensus 495 ~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~ 573 (740)
|++++++.++++++|+.|+....+..+..+ + +...+..+.+..++.+++++.++|+.++.++++..++.|++.+||+
T Consensus 202 d~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~ 279 (446)
T 1pp9_A 202 GLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSP--CRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGH 279 (446)
T ss_dssp SCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCC--CCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCE
T ss_pred CCCHHHHHHHHHHHhccCCCCCCCCccccCCC--CCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCC
Confidence 999999999999999999876543222121 1 1222333433445567899999999998888999999999999986
Q ss_pred CCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy5653 574 WDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKN 653 (740)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~el~~~k~ 653 (740)
+.++.|+|.++++|||+.||++|++|++++++..+.+.|.|.+++.++|+++.++++.+.++++++.++++++||+++|+
T Consensus 280 ~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~ 359 (446)
T 1pp9_A 280 YDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKN 359 (446)
T ss_dssp EETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 54444443345899999999889999999887766677899999999999999999999999999976899999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccCCCcEEEEEcCCCCCCCHHHHHH
Q psy5653 654 LLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQLPDYTWLRQ 733 (740)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~~~~~~~v~g~~~~i~~~~~~~~ 733 (740)
.++..+....+++...+..++..+..++.+.+.+++.+.|.+||++||++++++|+.+++..++++||...+|+++++.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 439 (446)
T 1pp9_A 360 LLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRS 439 (446)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHh
Confidence 99999999989999888888776656666667888899999999999999999999988899999999999999999999
Q ss_pred HHhhhcC
Q psy5653 734 SMYWIRF 740 (740)
Q Consensus 734 ~~~~~~~ 740 (740)
.+.|+||
T Consensus 440 ~~~~~~~ 446 (446)
T 1pp9_A 440 GMFWLRF 446 (446)
T ss_dssp TTC----
T ss_pred hHHhhcC
Confidence 9999986
No 4
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=6.4e-47 Score=403.35 Aligned_cols=387 Identities=23% Similarity=0.308 Sum_probs=347.6
Q ss_pred eEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEec
Q psy5653 322 NLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCL 395 (740)
Q Consensus 322 ~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 395 (740)
.+++.+++..+.+. ..|...++.+..+..|.++| +|+||.+++..++...++..|+.+|++++.+.|.|.++++
T Consensus 12 ~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~ 91 (406)
T 3eoq_A 12 RVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVL 91 (406)
T ss_dssp EEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEC
T ss_pred EEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEec
Confidence 45666666665543 56888888888999999999 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHH
Q psy5653 396 KQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDL 475 (740)
Q Consensus 396 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l 475 (740)
+++++.+|+++.+++ +|.|++++|+++|+.++++++...++|..++...+...+|++|||+++..|+.+.|++++.++|
T Consensus 92 ~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l 170 (406)
T 3eoq_A 92 PEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGM 170 (406)
T ss_dssp GGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHH
Confidence 999999999999999 9999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEeecCC
Q psy5653 476 LDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCG 555 (740)
Q Consensus 476 ~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 555 (740)
++||++||.|+|++++|+||++++++.++++++|+.|+..+.+.. .++ ....+..+.+..+...++++.++|+.++
T Consensus 171 ~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 246 (406)
T 3eoq_A 171 AAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA--YPP--LTPAFGVEERPYEKARALYLVALFPGVA 246 (406)
T ss_dssp HHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC--CCC--CCCCCEEEEEECTTCSSEEEEEEEECCC
T ss_pred HHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC--CCC--CCCCCceEEEecCCccceEEEEEecCCC
Confidence 999999999999999999999999999999999999987543221 111 1122333444444337999999999999
Q ss_pred CCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHHH
Q psy5653 556 WESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHE 635 (740)
Q Consensus 556 ~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (740)
.+++++.++.|++.+|| ||+ +++||+.||++|++|++++++..+.+.|.|.+++.+++++++++++.+.++
T Consensus 247 ~~~~d~~~l~vl~~iLg-------g~~--~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~ 317 (406)
T 3eoq_A 247 YQEEARFPGQVLAHLLG-------EEG--SGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEE 317 (406)
T ss_dssp TTCTTHHHHHHHHHHHH-------CTT--TSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhC-------CCc--chHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHH
Confidence 99999999999999998 343 899999999999999999988887888999999999999999999999999
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccCCCc
Q psy5653 636 WIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCP 714 (740)
Q Consensus 636 ~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~~~~ 714 (740)
++++.+ ++|++||+++|+.++..+....+++..++..++..+..++.+...+++.+.|++||++||++++++|+.+++.
T Consensus 318 l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~ 397 (406)
T 3eoq_A 318 LDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL 397 (406)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCcccE
Confidence 999975 8999999999999999999999999999999988777777778889999999999999999999999998877
Q ss_pred EEEEEcCCC
Q psy5653 715 VVAAVGPTE 723 (740)
Q Consensus 715 ~~~v~g~~~ 723 (740)
++++||..
T Consensus 398 -~~vvGp~~ 405 (406)
T 3eoq_A 398 -YYLVLPHG 405 (406)
T ss_dssp -EEEEECCC
T ss_pred -EEEECCCC
Confidence 99999975
No 5
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=2.8e-46 Score=400.82 Aligned_cols=392 Identities=27% Similarity=0.436 Sum_probs=350.8
Q ss_pred ceEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEe
Q psy5653 321 SNLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKC 394 (740)
Q Consensus 321 ~~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~ 394 (740)
..+++.+++..+.+. ..|...++.+..+.+|.++| +|.||.+++..++...++..|+.+|++++.+.+.|++++
T Consensus 11 l~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~ 90 (421)
T 3hdi_A 11 VRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKV 90 (421)
T ss_dssp CEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEe
Confidence 355666666666543 56888888888999999999 899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHH
Q psy5653 395 LKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQD 474 (740)
Q Consensus 395 ~~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~ 474 (740)
++++++.+|+++.+++.+|.|++++|+++|+.++++++...++|..++...+...+|+++||+++..|+.+.|++++.++
T Consensus 91 ~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~ 170 (421)
T 3hdi_A 91 LDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGM 170 (421)
T ss_dssp EGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHH
T ss_pred cHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEeecC
Q psy5653 475 LLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGC 554 (740)
Q Consensus 475 l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 554 (740)
|++||++||.|+|++++|+||++ +++.++++++|+.|+..+.+... .+ +.... ...+..++..++++.++|+.+
T Consensus 171 l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~--~~--~~~~~-~~~~~~~~~~q~~v~~~~~~~ 244 (421)
T 3hdi_A 171 LRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQG--EK--PMFLP-NRIVRKKETEQAHLCLGYPGL 244 (421)
T ss_dssp HHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCC--CC--CCCCC-CEEEEECCCSEEEEEEEEECC
T ss_pred HHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCC--CC--CCCCC-ceEEecCCCCceEEEEEEecC
Confidence 99999999999999999999999 99999999999999876543211 11 11222 233344567799999999998
Q ss_pred CCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHH
Q psy5653 555 GWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQ 633 (740)
Q Consensus 555 ~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (740)
+.++++..++.|++.+|| ||+ +++||+.||++ |++|+++++...+.+.+.|.+++.++|++++++++.+.
T Consensus 245 ~~~~~d~~~l~vl~~iLg-------g~~--~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~ 315 (421)
T 3hdi_A 245 PIGDKDVYALVLLNNVLG-------GSM--SSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQ 315 (421)
T ss_dssp CTTCTTHHHHHHHHHHHT-------SSS--SSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhC-------CCc--ccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHH
Confidence 889999999999999997 343 89999999986 99999999887777889999999999999999999999
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccCC
Q psy5653 634 HEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDR 712 (740)
Q Consensus 634 ~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~~ 712 (740)
++++++.+ +++++||+++|+.+++.+....+++..++..++.....++.....+++.+.|.+||++||++++++|+ ++
T Consensus 316 ~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~ 394 (421)
T 3hdi_A 316 ETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SA 394 (421)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc-cc
Confidence 99999975 89999999999999999999999999998888766666677777889999999999999999999999 99
Q ss_pred CcEEEEEcCCCCCCCH
Q psy5653 713 CPVVAAVGPTEQLPDY 728 (740)
Q Consensus 713 ~~~~~v~g~~~~i~~~ 728 (740)
+..++++||...+|+.
T Consensus 395 ~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 395 SPSISLINANGELPKA 410 (421)
T ss_dssp CCEEEEEESSCSCCSC
T ss_pred CcEEEEECchhcCcch
Confidence 9999999999999975
No 6
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=1.3e-45 Score=398.65 Aligned_cols=412 Identities=40% Similarity=0.689 Sum_probs=356.7
Q ss_pred eEEEeccCCCCce-----ecccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEec
Q psy5653 322 NLFLQLDGTTPVC-----EDIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCL 395 (740)
Q Consensus 322 ~~~~~~d~~~~~~-----~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 395 (740)
.+++.+++..+.+ ...|...++.+..+..|.++| +|.||.+++..++...++..|+++|++++.+.+.|+++++
T Consensus 17 ~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~ 96 (443)
T 1hr6_B 17 TIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSL 96 (443)
T ss_dssp EEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEec
Confidence 3445544444343 245777777778899999999 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHH
Q psy5653 396 KQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDL 475 (740)
Q Consensus 396 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l 475 (740)
+++++.+|+++.+++.+|.|++++|+++|+.++++++...++|...+...+...+|+++||+++..|+.+.|++++.++|
T Consensus 97 ~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l 176 (443)
T 1hr6_B 97 QEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDL 176 (443)
T ss_dssp GGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHH
Confidence 99999999999999999999999999999999999999899999999999999999999999998999999999999999
Q ss_pred HHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCC---CCCCcccCCCeeEEeCCCCCceeEEEEee
Q psy5653 476 LDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVV---PPAHCRYTGSDVRVRDDAMPLAHVALAVE 552 (740)
Q Consensus 476 ~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 552 (740)
++||++||.|+|++++|+||++++++.++++++|+.|+....+..... .+ ....+....+..++.+++++.++|+
T Consensus 177 ~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 254 (443)
T 1hr6_B 177 KDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPL--PVFCRGERFIKENTLPTTHIAIALE 254 (443)
T ss_dssp HHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSC--CCCCCEEEEEECTTCSEEEEEEEEE
T ss_pred HHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCC--CCCCCCeEEeccCCccceEEEEEEe
Confidence 999999999999999999999999999999999999986543322111 11 1222333444455667899999999
Q ss_pred cCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeC--CCCHHHHH
Q psy5653 553 GCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVAD--RMQLEDMT 629 (740)
Q Consensus 553 ~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 629 (740)
.+++++++..++.|++.+||++.+..++|.+++++||+.||++ |++|++++++..+.+.+.|.+++.++ |+++.+++
T Consensus 255 ~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 334 (443)
T 1hr6_B 255 GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIV 334 (443)
T ss_dssp CCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHH
T ss_pred cCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHH
Confidence 9888899999999999999863333444444589999999975 99999998877767789999999999 99999999
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHh
Q psy5653 630 FSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKY 708 (740)
Q Consensus 630 ~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~ 708 (740)
+.+.++++++.+ +++++||+++|+.++..+....+++..++..+...+..++.+.+..++.+.|.+||++||++++++|
T Consensus 335 ~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~ 414 (443)
T 1hr6_B 335 NEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYR 414 (443)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999986 6999999999999999999998999888888876655556666678889999999999999999999
Q ss_pred ccCCCcEEEEEcCCCCCCCHHHHHHHH
Q psy5653 709 IWDRCPVVAAVGPTEQLPDYTWLRQSM 735 (740)
Q Consensus 709 l~~~~~~~~v~g~~~~i~~~~~~~~~~ 735 (740)
+.+++..++++||...+|+++++.+.+
T Consensus 415 l~~~~~~~~v~g~~~~~~~~~~~~~~~ 441 (443)
T 1hr6_B 415 LQNKPVSMVALGNTSTVPNVSYIEEKL 441 (443)
T ss_dssp SSSCCEEEEEEECGGGCCCHHHHHHHH
T ss_pred hccCCcEEEEECCcccCccHHHHHHHh
Confidence 998899999999999999999987764
No 7
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1e-47 Score=455.45 Aligned_cols=674 Identities=10% Similarity=-0.004 Sum_probs=448.8
Q ss_pred cCCCCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCccC--------CCC
Q psy5653 15 KSVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQIK--------PEY 85 (740)
Q Consensus 15 ~~~~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~~--------~~~ 85 (740)
+..+.+.|++.+|+|||+|+ +.++..+. ++++|++.||++..|+|||||||+|+||++++... .-|
T Consensus 31 ~~~~~~~~~~~~l~nGl~v~~~~~~~~~~-----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g 105 (995)
T 2fge_A 31 SECKSKAILFKHKKTGCEVMSVSNEDENK-----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLH 105 (995)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEECSCSSE-----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCE
T ss_pred ccccceEEEEEECCCCCEEEEEEcCCCcc-----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccC
Confidence 34455678889999999999 77777665 47899999999999999999999999999886421 125
Q ss_pred cchhhhhhhhhhh------------------------ccc--ChhHHHHh---------------hhhHHHHHHHHH---
Q psy5653 86 GPLLVELSEEQVY------------------------MHI--KPNEVRQR---------------KKQRKIDNEVAD--- 121 (740)
Q Consensus 86 ~~~~~~~~~~~~~------------------------~~f--~~~~~~~~---------------~~~~~i~~e~~~--- 121 (740)
+..||+|..|.|+ |.| +++++++| +. +|.+|++.
T Consensus 106 ~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~--vV~~E~~~~~~ 183 (995)
T 2fge_A 106 TFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKG--VVFNEMKGVYS 183 (995)
T ss_dssp EEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEEC--HHHHHHHHHTT
T ss_pred CCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccc--hHHHHHHhhhC
Confidence 5567777666553 455 55677887 66 88888665
Q ss_pred ---------HHHHHhhcCCCCccccccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCC--C
Q psy5653 122 ---------LKLKLAACTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNR--E 178 (740)
Q Consensus 122 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~--~ 178 (740)
+...+++.|+|+++..|+...+..++..++..++..+|++... +.+++.+.|+.|+ .
T Consensus 184 ~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~ 263 (995)
T 2fge_A 184 QPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASP 263 (995)
T ss_dssp SHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccc
Confidence 4667788899999999999999999999999999999997443 4667778999887 3
Q ss_pred CCcccc----ccccccc-----CCCCC-CCCCCCccCcccCCCCCCC--chhh--HHHHHHHhcc---chhhhhhHHHHH
Q psy5653 179 GEEGEM----LSLDSVI-----SGRST-PSDSGSCSGDIISPTEPLS--LTDS--MLLMDDILSD---SRLDQLDRIERI 241 (740)
Q Consensus 179 ~~~~~~----~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~il~~---s~l~~~~~~~~~ 241 (740)
++.... .....+. ..... .....+..+.+++...... ++++ +.+++.+||+ |+|++.++++ +
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~-g 342 (995)
T 2fge_A 264 SPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLES-G 342 (995)
T ss_dssp HHHHSCCCCCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHT-T
T ss_pred cCCCcccCCCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhc-C
Confidence 211000 0011100 00000 1113455666666655555 5666 5779999976 6898888764 5
Q ss_pred HHHHhhcc-cccccCCccchhhhhhccceee-eecCchhHHhhh----------hcccChhHHHHHHHHHHHh-hhc-c-
Q psy5653 242 EAILTAEN-VAQIKPEYGPLLVELSEEQVYM-HIKPNEVRQRKK----------QRKIDNEDMTFSVQHEWIR-LCK-T- 306 (740)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~-~- 306 (740)
.++...+. +... ...+.+ .+.+ .+.++....... +..++.+++.. .++.+.. +.. .
T Consensus 343 l~~~~~~~~~~~~-~~~~~f-------~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~-ak~~~~~~~~~~~~ 413 (995)
T 2fge_A 343 LGEALVSSGLSDE-LLQPQF-------GIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEA-SMNTIEFSLRENNT 413 (995)
T ss_dssp SCSEECSCEEECS-SSSCEE-------EEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHCCC
T ss_pred CCcceeecccccc-ccCeEE-------EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHhccC
Confidence 44433322 1110 001111 2222 233433211100 11222222221 1111110 000 0
Q ss_pred ---C-----------------ChhH-------HHHHhh----h-------------cc-c--eE--EEeccCCC------
Q psy5653 307 ---V-----------------TPAE-------VERAKN----L-------------LK-S--NL--FLQLDGTT------ 331 (740)
Q Consensus 307 ---~-----------------s~~e-------l~~~k~----~-------------l~-~--~~--~~~~d~~~------ 331 (740)
+ .... +..+.. . +. + .+ ++.++...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~ 493 (995)
T 2fge_A 414 GSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEV 493 (995)
T ss_dssp TTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHH
Confidence 0 0000 111111 1 10 1 11 11111000
Q ss_pred --------------------------------------------Ccee--cc---------------c------------
Q psy5653 332 --------------------------------------------PVCE--DI---------------G------------ 338 (740)
Q Consensus 332 --------------------------------------------~~~~--~i---------------g------------ 338 (740)
|... ++ |
T Consensus 494 ~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~ 573 (995)
T 2fge_A 494 EEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTND 573 (995)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTSCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChHHHHhcCCCCHhhcCccCCCCCceeeecCCceEEEEecCCCC
Confidence 0000 00 0
Q ss_pred ----ceecccC-----CccchhhHHH-hh-ccCCCCChhHHHHHHHHhcCeeeE-----Eecc-----eEEEEEEEecCC
Q psy5653 339 ----RQILCYG-----RRVPLHELEA-RI-DGTSKRSQTDLELEVENIGAHLNA-----YTSR-----EQTVFYAKCLKQ 397 (740)
Q Consensus 339 ----~~~~~~~-----~~~~~~~l~~-~~-~gt~~~~~~~l~~~l~~~g~~~~~-----~~~~-----~~~~~~~~~~~~ 397 (740)
...+..+ ..+..+.+.. ++ .||.+++..++...++...+.+++ .++. +++.++++++++
T Consensus 574 ~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 653 (995)
T 2fge_A 574 IIYTEVVFDIGSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAG 653 (995)
T ss_dssp EEEEEEEEECTTSCTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGG
T ss_pred eEEEEEEeeCCCCCHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehh
Confidence 0000000 1112333333 34 399999999999999966554555 5544 889999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCCCCCCCC-----Ch------
Q psy5653 398 DVPKAVEILADIIQNSKLGQA-EIERERGVILREMQEVE-TNLQEVVFDHLHATAFQGTPLGNTILG-----PT------ 464 (740)
Q Consensus 398 ~l~~~l~~l~~~l~~~~~~~~-~~~~~k~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~------ 464 (740)
+++.+++++.+++.+|.|+++ +|+++++.+++++.+.. +++...+...+...+.+.++|.....| ..
T Consensus 654 ~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~ 733 (995)
T 2fge_A 654 RADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKK 733 (995)
T ss_dssp GHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHh
Confidence 999999999999999999999 99999999999997664 577777777776654444444321111 11
Q ss_pred --hhhccCCHHHHHHHHHhhccCCceEEEEEcCCCH-HHHHHHHHHhhCCC-CCCCCCCCCCCCCCCcccCCCeeEEeCC
Q psy5653 465 --QNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDH-DTLVKLAKEHFGNV-KPPNVDCAGVVPPAHCRYTGSDVRVRDD 540 (740)
Q Consensus 465 --~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~-~~~~~~v~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (740)
+.++.+ .++|++||+++|.+.+++++|+||++. +++.++++++|+.+ |....+..+...+ .. .... ....+
T Consensus 734 ~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~--~~-~~~~-~~~~~ 808 (995)
T 2fge_A 734 VDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGR--LP-LRNE-AIVIP 808 (995)
T ss_dssp HHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCSCCCCCC--CC-CCCE-EEECS
T ss_pred hhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCCCccccc--CC-ccce-EEEec
Confidence 447788 999999999999999999999999994 89999999999999 7544322111111 11 1111 12222
Q ss_pred CCCceeEEEEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEE-EEEE
Q psy5653 541 AMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWG-VYFV 619 (740)
Q Consensus 541 ~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~-~~~~ 619 (740)
..+.++..+++..++++++.+++.|++++|| .++||+.||++|++|++++++.. .|.|. ++++
T Consensus 809 -~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~~~L~~~iRe~g~aYg~~s~~~~---~G~~~~~~s~ 872 (995)
T 2fge_A 809 -TQVNYVGKAGNIYSTGYELDGSAYVISKHIS------------NTWLWDRVRVSGGAYGGFCDFDS---HSGVFSYLSY 872 (995)
T ss_dssp -CSSBEEEEEEEGGGGTCCCCTHHHHHHHHHH------------HTHHHHHTTTTTCCSEEEEEEET---TTTEEEEEEE
T ss_pred -CceEEEEEecCCCCCCCcccHHHHHHHHHHC------------CCccHHHhhhcCCCcccceEeCC---CccEEEEEEE
Confidence 4566666677666888999999999999998 57999999999999999998765 47888 8888
Q ss_pred eCCCCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCH
Q psy5653 620 ADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTA 698 (740)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 698 (740)
.+| ++.++++.+.+.++.+.+ ++|++||+++|.++++.+. ...++...+.+.|..+..+...+..+++++.|.+||+
T Consensus 873 ~dp-~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vT~ 950 (995)
T 2fge_A 873 RDP-NLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVD-SYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSL 950 (995)
T ss_dssp SBS-CSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCH
T ss_pred cCC-CHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCH
Confidence 888 789999999999997765 8999999999999999984 4567888888887766655434446888999999999
Q ss_pred HHHHHHHHHhccC-CCcEEEEEcCCCCCCCH
Q psy5653 699 KDIHEVCTKYIWD-RCPVVAAVGPTEQLPDY 728 (740)
Q Consensus 699 edv~~~~~~~l~~-~~~~~~v~g~~~~i~~~ 728 (740)
+||++++++|+.+ ++..++|+|+..++++.
T Consensus 951 edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 951 KDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 9999999999986 67899999997654443
No 8
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.3e-44 Score=393.20 Aligned_cols=395 Identities=25% Similarity=0.389 Sum_probs=348.3
Q ss_pred cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcCC
Q psy5653 336 DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK 414 (740)
Q Consensus 336 ~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 414 (740)
..|...++.+..+..|.++| +|.||.+++..++.+.++..|+.+|++++.++|.|.+++++++++.+|+++.+++.+|.
T Consensus 34 ~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~ 113 (475)
T 1hr6_A 34 DAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPK 113 (475)
T ss_dssp SCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBC
T ss_pred ccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHHHHHhCCC
Confidence 56777787888999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEc
Q psy5653 415 LGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAG 494 (740)
Q Consensus 415 ~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G 494 (740)
|++++|+++|+.++++++...++|..++...+...+|+++||+++..|+.+.|++++.++|++||++||.|+|++++|+|
T Consensus 114 f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G 193 (475)
T 1hr6_A 114 ITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG 193 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeC-----CCCCceeEEEEeecCCCCCCChHHHHHHHH
Q psy5653 495 GVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRD-----DAMPLAHVALAVEGCGWESADNIPLMVANT 569 (740)
Q Consensus 495 ~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~ 569 (740)
++++++.++++++|+.|+....+..+ ++ ....+....+.. ++.+++++.++|++++.++++..++.|++.
T Consensus 194 -~d~~~~~~~i~~~f~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~ 268 (475)
T 1hr6_A 194 -VPHEKALELTGKYLGDWQSTHPPITK--KV--AQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQT 268 (475)
T ss_dssp -SCHHHHHHHHHHHHTTCCCCCCCCCC--CC--CCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHhccCCCCCCCCCC--CC--CCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHH
Confidence 99999999999999999865432111 11 122233333331 456789999999988888899999999999
Q ss_pred hhcCCCC--CCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhhc----C
Q psy5653 570 LIGAWDR--SQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK----T 642 (740)
Q Consensus 570 iL~~~~~--~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~ 642 (740)
+||+..+ .+|.|++++++||+.||++ |++|+++++...+.+.+.|.++++++|+++.++++.+.++++++.+ +
T Consensus 269 iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 348 (475)
T 1hr6_A 269 LLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLR 348 (475)
T ss_dssp HHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSC
T ss_pred HhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9986432 2234444689999999996 9999999988777778999999999999999999999999999875 5
Q ss_pred CCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccC---------CC
Q psy5653 643 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWD---------RC 713 (740)
Q Consensus 643 ~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~---------~~ 713 (740)
+|++||+++|+.++..+....+++..++..++..+..++.+.+.+++.+.|.+||++||++++++|+.+ ++
T Consensus 349 ~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~ 428 (475)
T 1hr6_A 349 LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGR 428 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCC
Confidence 999999999999999999999999999999988766566666688889999999999999999999987 58
Q ss_pred cEEEEEcCCCCCCCHHHHHHHH
Q psy5653 714 PVVAAVGPTEQLPDYTWLRQSM 735 (740)
Q Consensus 714 ~~~~v~g~~~~i~~~~~~~~~~ 735 (740)
+.++++||...+|+++++.+..
T Consensus 429 ~~~~v~g~~~~~~~~~~~~~~~ 450 (475)
T 1hr6_A 429 ATVVMQGDRGSFGDVENVLKAY 450 (475)
T ss_dssp CEEEEESCGGGGCCHHHHHHHT
T ss_pred cEEEEECCcccCcCHHHHHHHh
Confidence 9999999999999999887654
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=2.9e-44 Score=387.03 Aligned_cols=409 Identities=25% Similarity=0.386 Sum_probs=352.4
Q ss_pred ceEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEe
Q psy5653 321 SNLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKC 394 (740)
Q Consensus 321 ~~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~ 394 (740)
..+++.+++..+.+. ..|...++.+..+..|.++| +|.||.+ +.++..|+++|++++.+++.|++++
T Consensus 10 l~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~~t~~~~~~ 82 (431)
T 3cx5_A 10 IVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRDFQSYIVSS 82 (431)
T ss_dssp SEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSSCEEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCCeEEEEEEe
Confidence 356666676666543 45777777788999999999 7788643 3578899999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCCCCCCCCCChhhhccC
Q psy5653 395 LKQDVPKAVEILADIIQNSK---LGQAEIERERGVILREMQEVETNL-QEVVFDHLHATAFQGTPLGNTILGPTQNIKSL 470 (740)
Q Consensus 395 ~~~~l~~~l~~l~~~l~~~~---~~~~~~~~~k~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 470 (740)
++++++.+|+++.+++.+|. |++++|+++|+.++++++...++| ..++...+...+|+++||+++..|+.+.|+++
T Consensus 83 ~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 162 (431)
T 3cx5_A 83 LPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENL 162 (431)
T ss_dssp CSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTC
T ss_pred chhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhC
Confidence 99999999999999999999 999999999999999998888899 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEE
Q psy5653 471 QRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALA 550 (740)
Q Consensus 471 t~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 550 (740)
+.++|++||+++|.++|++++|+||++++++.++++++|+.|+..+.+.. ..+ ....+..+.+..++.+++++.++
T Consensus 163 t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~ 238 (431)
T 3cx5_A 163 VVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVL--KKK--AAFLGSEVRLRDDTLPKAWISLA 238 (431)
T ss_dssp CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCC--CCC--CCCCCEEEEEECTTSSSEEEEEE
T ss_pred CHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCC--CCC--CcccCceEEEcCCCCCceEEEEE
Confidence 99999999999999999999999999999999999998888886543221 111 12223334443445678999999
Q ss_pred eecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEEEEEEeCC-CCHHHHH
Q psy5653 551 VEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADR-MQLEDMT 629 (740)
Q Consensus 551 ~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 629 (740)
|+.++.++++..++.|++.+||++.++++++.+++++||+.||++|++|++++++....+.+.|.+++.++| +++++++
T Consensus 239 ~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~ 318 (431)
T 3cx5_A 239 VEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLI 318 (431)
T ss_dssp EECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHH
T ss_pred eecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHHHH
Confidence 999888899999999999999854333333323479999999988999999998776667889999999998 9999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHH
Q psy5653 630 FSVQHEWIRLCKTVTPAEVERAKNLLKSNLFL--QLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTK 707 (740)
Q Consensus 630 ~~~~~~~~~l~~~~s~~el~~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~ 707 (740)
+.+.++++++.++++++||+++|+.++..+.. ..+++..++..++..+..++.+.+.+++.+.|++||++||++++++
T Consensus 319 ~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~ 398 (431)
T 3cx5_A 319 HFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGK 398 (431)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999997699999999999999999999 8999999999988766555555567888999999999999999999
Q ss_pred hccCCCcEEEEEcCCCCCCCHHHHHHHHhhhcC
Q psy5653 708 YIWDRCPVVAAVGPTEQLPDYTWLRQSMYWIRF 740 (740)
Q Consensus 708 ~l~~~~~~~~v~g~~~~i~~~~~~~~~~~~~~~ 740 (740)
|+.+++..++++||...+|+++++.+.+.|++|
T Consensus 399 ~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 431 (431)
T 3cx5_A 399 RLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW 431 (431)
T ss_dssp HTTTCCCEEEEEESCTTSCCHHHHHHTTSCCCC
T ss_pred HcccCCcEEEEEcchhcccCHHHHHhHHHhhcC
Confidence 999888999999999999999999999999886
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=2.4e-44 Score=388.36 Aligned_cols=397 Identities=18% Similarity=0.255 Sum_probs=339.1
Q ss_pred eEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEec
Q psy5653 322 NLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCL 395 (740)
Q Consensus 322 ~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 395 (740)
.+++.+++..+.+. ..|...++.+..+.+|.++| +|.||.+++..++...++..|+++|++++.+.+.|.++++
T Consensus 17 ~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~ 96 (445)
T 3ami_A 17 KVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVP 96 (445)
T ss_dssp EEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEE
T ss_pred EEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECC
Confidence 45556666665543 56888888888999999999 8999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHH
Q psy5653 396 KQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQ-EVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQD 474 (740)
Q Consensus 396 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~ 474 (740)
+++++.+|+++.+++.+|.|++++|+++|+.++++++ ...++|..++...+...+|++|||+++..|+.++|++++.++
T Consensus 97 ~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~ 176 (445)
T 3ami_A 97 SSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQD 176 (445)
T ss_dssp GGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHH
Confidence 9999999999999999999999999999999999998 678899999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCC-CeeEEeCCCCCceeEEEEeec
Q psy5653 475 LLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTG-SDVRVRDDAMPLAHVALAVEG 553 (740)
Q Consensus 475 l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~ 553 (740)
|++||++||.|+||+++|+||++++++.++++++|+.|+....+....... +...+ ..+.+.. +..++++.++|+.
T Consensus 177 l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~v~l~~~~ 253 (445)
T 3ami_A 177 VRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGE--PQQAGVRRVTVKA-PAELPYLALAWHV 253 (445)
T ss_dssp HHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCC--CCCCSCEEEEEEE-ECSSCEEEEEEEE
T ss_pred HHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCCceEEEEec-CCCccEEEEEEEc
Confidence 999999999999999999999999999999999999998754322211111 11122 2233332 3568899999999
Q ss_pred CC---CC-CCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHh-cCCeEEEEeeccc-CCC-CceEEEEEEeCCC-CH
Q psy5653 554 CG---WE-SADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAE-QGFAHSFQSFNTC-YKD-TGLWGVYFVADRM-QL 625 (740)
Q Consensus 554 ~~---~~-~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~-~gl~Y~v~~~~~~-~~~-~~~~~~~~~~~~~-~~ 625 (740)
+. .+ +++..++.+++.+|| +|+ ++||++.||+ +|++|++++++.. ..+ .+.|.+++.+.++ +.
T Consensus 254 ~~~~~~~~~~~~~~~~vl~~iLg-------~~~--~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~ 324 (445)
T 3ami_A 254 PAIVDLDKSRDAYALEILAAVLD-------GYD--GARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTI 324 (445)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHH-------SST--TCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCH
T ss_pred CCcccccCChhHHHHHHHHHHHc-------CCc--chHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCH
Confidence 88 77 788999999999998 343 8999999997 4999999998763 445 7899999988887 59
Q ss_pred HHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHH
Q psy5653 626 EDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEV 704 (740)
Q Consensus 626 ~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~ 704 (740)
+++++.+.++++++.+ +++++||+++|+.++..+....+++..++..+...+..++......++.+.|++||++||+++
T Consensus 325 ~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~ 404 (445)
T 3ami_A 325 AQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAA 404 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999975 999999999999999999999999999998887765555555556888999999999999999
Q ss_pred HHHhccCCCcEEEEEcCCCCCCCHHH
Q psy5653 705 CTKYIWDRCPVVAAVGPTEQLPDYTW 730 (740)
Q Consensus 705 ~~~~l~~~~~~~~v~g~~~~i~~~~~ 730 (740)
+++||.+++..++++||+..+|+..+
T Consensus 405 a~~~l~~~~~~~~~~~p~~~~~~~~~ 430 (445)
T 3ami_A 405 AARLLTDDTLTVANLVPLPPDPKAQQ 430 (445)
T ss_dssp HHTTSCSTTEEEEEEEEECC------
T ss_pred HHHHcCcCCeEEEEEccCccCccccc
Confidence 99999998999999999988887654
No 11
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.4e-43 Score=381.93 Aligned_cols=392 Identities=15% Similarity=0.156 Sum_probs=340.8
Q ss_pred ceEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEe
Q psy5653 321 SNLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKC 394 (740)
Q Consensus 321 ~~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~ 394 (740)
..+++.+++..+.+. ..|...+ .+..+..|.++| +|.||.+++..++...++..|++++++++.+++.|++++
T Consensus 23 l~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~ 101 (434)
T 3gwb_A 23 AKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRS 101 (434)
T ss_dssp CEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEe
Confidence 356666776666543 4566666 677888999999 899999999999999999999999999999999999999
Q ss_pred cCCC--hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCH
Q psy5653 395 LKQD--VPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQR 472 (740)
Q Consensus 395 ~~~~--l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~ 472 (740)
++++ ++.+|+++.+++.+|.|++++|+++|+.+++++++...+|...+...+...+|+++||+++..|+.+.|++++.
T Consensus 102 ~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~ 181 (434)
T 3gwb_A 102 LSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITL 181 (434)
T ss_dssp ECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCH
T ss_pred cCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCH
Confidence 9998 99999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEee
Q psy5653 473 QDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVE 552 (740)
Q Consensus 473 e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 552 (740)
++|++||+++|.++|++++|+||++.+++.++++++|+.|+..+.+..+.. + ....+....+..+ ..++++.++|+
T Consensus 182 ~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~~~~~~~~~~~~~-~~~~~v~~~~~ 257 (434)
T 3gwb_A 182 AQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQ-P--AEPKASIGHIEFP-SSQTSLMLAQL 257 (434)
T ss_dssp HHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCC-C--CCCCCEEEEEECC-SSEEEEEEEEE
T ss_pred HHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCC-C--CCCCCceEEEeCC-CCceeEEecCc
Confidence 999999999999999999999999999999999999999987643322211 1 1222233334443 47899999999
Q ss_pred cCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHH
Q psy5653 553 GCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFS 631 (740)
Q Consensus 553 ~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (740)
.++.++++..++.|++.+||+ +|+ +++||+.||++ |++|++++++....+.+.|.++++++|++++++++.
T Consensus 258 ~~~~~~~d~~~l~vl~~iLg~------~~~--~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 329 (434)
T 3gwb_A 258 GIDRDDPDYAAVSLGNQILGG------GGF--GTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKL 329 (434)
T ss_dssp CCBTTCTTHHHHHHHHHHHHS------SSS--CSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCcchHHHHHHHHHhCC------Ccc--cchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHH
Confidence 988889999999999999983 224 89999999997 999999999887778899999999999999999999
Q ss_pred HHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhcc
Q psy5653 632 VQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIW 710 (740)
Q Consensus 632 ~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~ 710 (740)
+.++++++.+ +++++||+++|+.++..+....+++..++..++..+..+......+++.+.|++||++||++++++|+.
T Consensus 330 i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~ 409 (434)
T 3gwb_A 330 VQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLN 409 (434)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 9999999975 999999999999999999999999999999998765544344446889999999999999999999999
Q ss_pred CCCcEEEEEcCCCCC
Q psy5653 711 DRCPVVAAVGPTEQL 725 (740)
Q Consensus 711 ~~~~~~~v~g~~~~i 725 (740)
+++..++++||...-
T Consensus 410 ~~~~~~~vvg~~~~~ 424 (434)
T 3gwb_A 410 VDKMVIVSAGPTVAQ 424 (434)
T ss_dssp GGGCEEEEEECCCCC
T ss_pred hhhEEEEEEcCcccc
Confidence 999999999997653
No 12
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=7.9e-43 Score=376.63 Aligned_cols=397 Identities=22% Similarity=0.344 Sum_probs=344.9
Q ss_pred eEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEec
Q psy5653 322 NLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCL 395 (740)
Q Consensus 322 ~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 395 (740)
.+++.++ ..+.+. ..|...+..+..+..|.++| +|.||.+++..++.+.++..|++++++++.+++.|+++++
T Consensus 34 ~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~ 112 (439)
T 1pp9_B 34 VIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECL 112 (439)
T ss_dssp EEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEE
T ss_pred EEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEee
Confidence 4556666 455543 45777777778889999999 7899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHH
Q psy5653 396 KQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDL 475 (740)
Q Consensus 396 ~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l 475 (740)
+++++.+|+++.+++.+|.|++++|+++|+.++++++...++|..++...+...+|+ +||+++..|+.+.|++++.++|
T Consensus 113 ~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it~~~l 191 (439)
T 1pp9_B 113 RDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVEL 191 (439)
T ss_dssp GGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcCHHHH
Confidence 999999999999999999999999999999999999988899999999999999999 9999999999999999999999
Q ss_pred HHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEeecCC
Q psy5653 476 LDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCG 555 (740)
Q Consensus 476 ~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 555 (740)
++||+++|.++|++++|+|| +++++.++++++|+ |+....+. + .+ ....+....+.. +.+++++.++|+.++
T Consensus 192 ~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~~~~~~-~--~~--~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 263 (439)
T 1pp9_B 192 HDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRGGLGLS-G--AK--AKYHGGEIREQN-GDSLVHAALVAESAA 263 (439)
T ss_dssp HHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCCCC-CC-C--CC--CCBCCEEEEEEC-CCSEEEEEEEEECCC
T ss_pred HHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCCCCCCC-C--CC--CCCcCCeEEecC-CccceEEEEEecCCC
Confidence 99999999999999999999 99999999999998 87654321 1 11 122233333333 457899999999988
Q ss_pred CCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHH
Q psy5653 556 WESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQH 634 (740)
Q Consensus 556 ~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (740)
.++++..++.|++++||+..+.++|| +++++||+.||++ |++|++++++....+.+.|.+++.++|+++.++++.+.+
T Consensus 264 ~~~~~~~~~~ll~~iLg~~~~~~~~~-g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~ 342 (439)
T 1pp9_B 264 IGSAEANAFSVLQHVLGAGPHVKRGS-NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYN 342 (439)
T ss_dssp TTSHHHHHHHHHHHHHCCSCSBTTCC-CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCCcccCCCC-CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHH
Confidence 88889999999999998643222222 3489999999986 999999998776667889999999999999999999999
Q ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccCCC
Q psy5653 635 EWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRC 713 (740)
Q Consensus 635 ~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~~~ 713 (740)
.++++.+ +++++||+++|+.++..+....+++..++..++..+..++.....+++.+.|++||++||++++++|+. ++
T Consensus 343 ~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~-~~ 421 (439)
T 1pp9_B 343 QVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVS-GR 421 (439)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHHH-SC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhc-CC
Confidence 9999985 899999999999999999999999999999998877766666678899999999999999999999998 78
Q ss_pred cEEEEEcCCCCCCCHHH
Q psy5653 714 PVVAAVGPTEQLPDYTW 730 (740)
Q Consensus 714 ~~~~v~g~~~~i~~~~~ 730 (740)
..++++||...+|++++
T Consensus 422 ~~~~v~g~~~~~~~~~~ 438 (439)
T 1pp9_B 422 KSMAASGNLGHTPFIDE 438 (439)
T ss_dssp EEEEEEECGGGCCCGGG
T ss_pred ceEEEECCcccCCcccc
Confidence 99999999999998764
No 13
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.5e-42 Score=370.79 Aligned_cols=391 Identities=18% Similarity=0.242 Sum_probs=337.9
Q ss_pred ceEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCC----CCChhHHHHHHHHhcCeeeEEecceEEEE
Q psy5653 321 SNLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTS----KRSQTDLELEVENIGAHLNAYTSREQTVF 390 (740)
Q Consensus 321 ~~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~----~~~~~~l~~~l~~~g~~~~~~~~~~~~~~ 390 (740)
..+++.+++..+.+. ..|...++.+..+..|.++| +|.||. +++..++...++..|++++++++.+++.|
T Consensus 13 l~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~ 92 (424)
T 3amj_B 13 AQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASF 92 (424)
T ss_dssp CEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEE
T ss_pred cEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEE
Confidence 356677777666553 45777777788899999999 889999 99999999999999999999999999999
Q ss_pred EEEecCCCh--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhc
Q psy5653 391 YAKCLKQDV--PKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIK 468 (740)
Q Consensus 391 ~~~~~~~~l--~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (740)
+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.++++...++|..++...+...+|+++||+... +.+.|+
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~ 170 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQ 170 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHH
Confidence 999999998 9999999999999999999999999999999998889999999999999999999999876 889999
Q ss_pred cCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEE
Q psy5653 469 SLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVA 548 (740)
Q Consensus 469 ~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 548 (740)
+++.++|++||++||.|+|++++|+||++++++.++++++|+.|+....+.....++ ...+..+.+.. +..++++.
T Consensus 171 ~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~v~ 246 (424)
T 3amj_B 171 KISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPA---MPRATVERIAN-PATQAHIA 246 (424)
T ss_dssp HCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCC---CCCCEEEEEEC-SSSEEEEE
T ss_pred hCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCC---CCCCceEEeeC-CCCccEEE
Confidence 999999999999999999999999999999999999999999998654332111111 11233344433 34789999
Q ss_pred EEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHH
Q psy5653 549 LAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLED 627 (740)
Q Consensus 549 ~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (740)
++|+.++.++++..++.|++.+||+ | ++++|||+.||++ |++|++++++....+.+.|.++++++|+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~iLg~-------~-~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 318 (424)
T 3amj_B 247 IGMPTLKRGDPDFFPLVVGNYALGG-------G-GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADE 318 (424)
T ss_dssp EEEEEEBTTCTTHHHHHHHHHHHTT-------S-GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHH
T ss_pred eeccCCCCCCcchHHHHHHHHHhCC-------C-CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHH
Confidence 9999888888999999999999973 2 1489999999985 99999999887777788999999999999999
Q ss_pred HHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHH
Q psy5653 628 MTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCT 706 (740)
Q Consensus 628 ~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~ 706 (740)
+++.+.++++++.+ +++++||+++|+.++..+....+++..++..++.....+......+++.+.|.+||++||+++++
T Consensus 319 ~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~ 398 (424)
T 3amj_B 319 AVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFA 398 (424)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTTTTSHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999975 99999999999999999999999999999988764443333344678899999999999999999
Q ss_pred HhccCCCcEEEEEcCCCCC
Q psy5653 707 KYIWDRCPVVAAVGPTEQL 725 (740)
Q Consensus 707 ~~l~~~~~~~~v~g~~~~i 725 (740)
+|+.+++..++++||...+
T Consensus 399 ~~l~~~~~~~~~~~~~~~~ 417 (424)
T 3amj_B 399 RHVKRENLITVVVGGKASL 417 (424)
T ss_dssp HHCCGGGCEEEEEECC---
T ss_pred HhcCccceEEEEECChhhh
Confidence 9999999999999998654
No 14
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.6e-43 Score=410.64 Aligned_cols=347 Identities=13% Similarity=0.021 Sum_probs=253.0
Q ss_pred cCCCCChhHHHHHHHHhcCeeeEEec----------------ceEEEEEEEecCCChHHHHHHHHHHHhcCCCCHHH-HH
Q psy5653 359 GTSKRSQTDLELEVENIGAHLNAYTS----------------REQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAE-IE 421 (740)
Q Consensus 359 gt~~~~~~~l~~~l~~~g~~~~~~~~----------------~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~-~~ 421 (740)
||+++++.++...++.+++++++.+. ...+.++++++.++++.+++++.+++.+|.|++.+ +.
T Consensus 770 GT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk 849 (1193)
T 3s5m_A 770 KTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVI 849 (1193)
T ss_dssp CBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 99999999999999999888777753 34578999999999999999999999999998753 55
Q ss_pred HHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCC-------------HHHHHHHHHhhccCCc
Q psy5653 422 RERGVILREMQE-VETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ-------------RQDLLDYVNAFYQPAR 487 (740)
Q Consensus 422 ~~k~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it-------------~e~l~~~~~~~~~~~~ 487 (740)
.+....+..+.+ ...+....+...+...+.+.++|.....| ...+..++ .++|+++++++|+++|
T Consensus 850 ~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~n 928 (1193)
T 3s5m_A 850 DILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKN 928 (1193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCC
Confidence 555555555533 33344445544444444333333222222 12222111 6789999999999999
Q ss_pred eEEEEEcCCC-HHHHHHHHHHhhCCCCC----CCC-----C---CCCCCC--------CCCc-ccCCCeeEEeCCCCCce
Q psy5653 488 MVLSGAGGVD-HDTLVKLAKEHFGNVKP----PNV-----D---CAGVVP--------PAHC-RYTGSDVRVRDDAMPLA 545 (740)
Q Consensus 488 ~~~~i~G~~~-~~~~~~~v~~~~~~l~~----~~~-----~---~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~ 545 (740)
+.+.|+|+.+ .+++.+.++++++.++. ... . ..+... .... ........+. .+.+++
T Consensus 929 l~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~p~~v~ 1007 (1193)
T 3s5m_A 929 LMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFV-LPTFVN 1007 (1193)
T ss_dssp EEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEE-CCCSSB
T ss_pred eEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccceeEe-cCCcce
Confidence 9999999986 57777666666554431 000 0 000000 0000 0011111122 246789
Q ss_pred eEEEEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEEEEEEeCCCCH
Q psy5653 546 HVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQL 625 (740)
Q Consensus 546 ~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 625 (740)
++..+++....++++++++.|++.||| +++||++||++|+||++++++. ..|.|.++.+++| ++
T Consensus 1008 yv~~~~~~~~~~~~d~~al~Vl~~iLg------------~~~L~~eIREkgGAYg~~s~~~---~~G~f~~~syrdp-~~ 1071 (1193)
T 3s5m_A 1008 SVSMSGILFKPGEYLDPSFTVIVAALK------------NSYLWDTVRGLNGAYGVFADIE---YDGSVVFLSARDP-NL 1071 (1193)
T ss_dssp EEEEEEECSCTTCBCCTHHHHHHHHHH------------HTHHHHHHTTTTCCSEEEEEEC---TTSEEEEEEESBS-CS
T ss_pred EEEEEecCCCCCCCchHHHHHHHHHHC------------ccHHHHHHHhcCCeeEEEEecc---CCCcEEEEEEeCC-CH
Confidence 999999888888999999999999998 6899999999988999999876 4688888888888 68
Q ss_pred HHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHH
Q psy5653 626 EDMTFSVQHEWIRLCK---TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIH 702 (740)
Q Consensus 626 ~~~~~~~~~~~~~l~~---~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~ 702 (740)
.++++.+.+.++.+.+ ++|++||+++|.++++++. ...++...+..++..+..+...+.++++.+.|.+||++||+
T Consensus 1072 ~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~~~~Gl~~d~~~~~~~~I~aVT~edv~ 1150 (1193)
T 3s5m_A 1072 EKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLRLISNESEQDRVEFRKRIMNTKKEDFY 1150 (1193)
T ss_dssp HHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCHHHHH
Confidence 8999999888887765 8999999999999999976 45577777777766544443434568999999999999999
Q ss_pred HHHHHhccC---CCcEEEEEcCCCC
Q psy5653 703 EVCTKYIWD---RCPVVAAVGPTEQ 724 (740)
Q Consensus 703 ~~~~~~l~~---~~~~~~v~g~~~~ 724 (740)
++|++|+.+ ++..++|+|+..+
T Consensus 1151 ~vA~~~~~~l~~~~~~~vvvG~~~~ 1175 (1193)
T 3s5m_A 1151 KFADLLESKVNEFEKNIVIITTKEK 1175 (1193)
T ss_dssp HHHHHHHHTHHHHTTEEEEEECHHH
T ss_pred HHHHHHhhhhcccCceEEEEcCHHH
Confidence 999999987 5789999999643
No 15
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-38 Score=342.69 Aligned_cols=383 Identities=17% Similarity=0.153 Sum_probs=320.2
Q ss_pred eEEEeccCCCCcee-----cccceecccCCccchhhHHH-hhccCCCC-ChhHHHHHHHHh-cCeeeEEecceE----EE
Q psy5653 322 NLFLQLDGTTPVCE-----DIGRQILCYGRRVPLHELEA-RIDGTSKR-SQTDLELEVENI-GAHLNAYTSREQ----TV 389 (740)
Q Consensus 322 ~~~~~~d~~~~~~~-----~ig~~~~~~~~~~~~~~l~~-~~~gt~~~-~~~~l~~~l~~~-g~~~~~~~~~~~----~~ 389 (740)
.+++.+++..+... ..|... ...+..|.++| +|.||.++ +..++...++.. |+.++++++.++ +.
T Consensus 13 ~v~~~~~~~~~~~~~~~~~~~g~~~---e~~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~ 89 (425)
T 3d3y_A 13 NLHVIPTEKYKTVRLLVRFNTRLNH---ETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFN 89 (425)
T ss_dssp EEEEEECSSCSEEEEEEEEEEECCT---TTHHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEE
T ss_pred EEEEEecCccceEEEEEEEeCCCCc---cchhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEE
Confidence 45666776666553 223322 23567899999 78999999 778999999997 999999998887 68
Q ss_pred EEEEecCC-------ChHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCCC
Q psy5653 390 FYAKCLKQ-------DVPKAVEILADIIQNSK-----LGQAEIERERGVILREMQEVETNLQEVVFDHLHATAF-QGTPL 456 (740)
Q Consensus 390 ~~~~~~~~-------~l~~~l~~l~~~l~~~~-----~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~ 456 (740)
|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.++++...++|..++...+...+| +++||
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~ 169 (425)
T 3d3y_A 90 ISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQ 169 (425)
T ss_dssp EEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTT
T ss_pred EEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCc
Confidence 99999987 69999999999999999 9999999999999999988888999999999999999 89999
Q ss_pred CCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeE
Q psy5653 457 GNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVR 536 (740)
Q Consensus 457 ~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 536 (740)
+++..|+.+.|++++.++|++||+++|.++|++++|+||++++++.+++ ++|+ |+....+..+..... +........
T Consensus 170 ~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (425)
T 3d3y_A 170 KIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQ-PIRNVIEER 246 (425)
T ss_dssp TSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCC-CCCSSCEEE
T ss_pred cCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccc-cCCCcceeE
Confidence 9999999999999999999999999999999999999999999999999 9999 986543221111010 111112223
Q ss_pred EeCCCCCceeEEEEeecC-CCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceE
Q psy5653 537 VRDDAMPLAHVALAVEGC-GWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLW 614 (740)
Q Consensus 537 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~ 614 (740)
+..++..++++.++|+.+ +.++++..++.|++++|| ||+ +++||+.||++ |++|++++.+.. ..|.|
T Consensus 247 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg-------~~~--~s~L~~~lRe~~glaY~v~~~~~~--~~g~~ 315 (425)
T 3d3y_A 247 TEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFG-------GFP--HSKLFMNVREKEHLAYYASSSIDT--FRGFM 315 (425)
T ss_dssp EEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHT-------TST--TSHHHHHTTTTSCCCSEEEEEEET--TTTEE
T ss_pred EecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhC-------CCh--hhHHHHHHHHhcCeEEEEeccccc--cCceE
Confidence 333456789999999985 688899999999999997 343 89999999986 999999987654 36788
Q ss_pred EEEEEeCCCCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHH
Q psy5653 615 GVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARI 693 (740)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 693 (740)
.+++.++|+++.++++.+.+.++++.+ +++++||+++|+.++..+....+++..++..++..+..++.+.+.+++.+.|
T Consensus 316 ~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 395 (425)
T 3d3y_A 316 TVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARI 395 (425)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHH
T ss_pred EEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 888888999999999999999999986 8999999999999999999999999999998887766535555688899999
Q ss_pred cccCHHHHHHHHHHhccCCCcEEEEEcCCC
Q psy5653 694 DDVTAKDIHEVCTKYIWDRCPVVAAVGPTE 723 (740)
Q Consensus 694 ~~vT~edv~~~~~~~l~~~~~~~~v~g~~~ 723 (740)
++||++||++++++|+. + ..++++|+++
T Consensus 396 ~~vt~edv~~~a~~~~~-~-~~~~v~g~~~ 423 (425)
T 3d3y_A 396 NAVTIPEIQEVAKRLEL-Q-AIFFLEGETE 423 (425)
T ss_dssp HHCCHHHHHHHHHHCEE-E-EEEEEEEECC
T ss_pred HhCCHHHHHHHHHhccC-c-eEEEEeCCCC
Confidence 99999999999999874 3 4667777653
No 16
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.3e-36 Score=358.84 Aligned_cols=393 Identities=17% Similarity=0.126 Sum_probs=325.2
Q ss_pred eEEEeccCCCCce-----ecccceecccCCccchhhHHH-hhccCCCCCh-hHHHHHHHHhcCeeeEEecceEEEEEEEe
Q psy5653 322 NLFLQLDGTTPVC-----EDIGRQILCYGRRVPLHELEA-RIDGTSKRSQ-TDLELEVENIGAHLNAYTSREQTVFYAKC 394 (740)
Q Consensus 322 ~~~~~~d~~~~~~-----~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~-~~l~~~l~~~g~~~~~~~~~~~~~~~~~~ 394 (740)
.+++..++..+.+ ..+|+..++.+..|.+|.++| +|.||.+++. .++...++.+|+++|++|+.+.|.|.+++
T Consensus 31 ~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~ 110 (939)
T 1q2l_A 31 VVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEV 110 (939)
T ss_dssp EEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEE
T ss_pred EEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEe
Confidence 4566666666655 366888888889999999999 8999999985 69999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhcc----C
Q psy5653 395 LKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKS----L 470 (740)
Q Consensus 395 ~~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----i 470 (740)
++++++.+|+++.+++.+|.|++++++++|..+.+|++...++|..++...+...+|++|||++...|+.++|++ +
T Consensus 111 ~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~ 190 (939)
T 1q2l_A 111 ENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNP 190 (939)
T ss_dssp CGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBC
T ss_pred CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCch
Confidence 999999999999999999999999999999999999999899999999999999999999999999999999999 9
Q ss_pred CHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEE
Q psy5653 471 QRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALA 550 (740)
Q Consensus 471 t~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 550 (740)
+.++|++||++||.|+||+++|+||++++++.++++++|+.|+.+..+......+..............+..+++.+.++
T Consensus 191 ~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 270 (939)
T 1q2l_A 191 VQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKVLRVE 270 (939)
T ss_dssp HHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSSCCCEEEEE
T ss_pred HHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEEEEEeCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999987653322111110011111222333355678999999
Q ss_pred eecCCCCCC-ChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeec--ccCCCCceEEEEEEeCC---CC
Q psy5653 551 VEGCGWESA-DNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFN--TCYKDTGLWGVYFVADR---MQ 624 (740)
Q Consensus 551 ~~~~~~~~~-~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~--~~~~~~~~~~~~~~~~~---~~ 624 (740)
|+.+...+. +..++.+++.+||+ ++ +++|++.||++|++|+++++. ....+.+.|.+++.+.+ ++
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~lLg~-------~~--~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~ 341 (939)
T 1q2l_A 271 FRIDNNSAKFRSKTDELITYLIGN-------RS--PGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLAN 341 (939)
T ss_dssp EEEECCGGGGGGCHHHHHHHHHHC-------CC--TTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHT
T ss_pred EEcCChHHhhhhCHHHHHHHHhcC-------CC--CCcHHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhh
Confidence 998876543 56788999999984 32 789999999889999998874 33456788999888765 59
Q ss_pred HHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHH
Q psy5653 625 LEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQL-DGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIH 702 (740)
Q Consensus 625 ~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~ 702 (740)
++++++.+.++++++.+ |++++||+++|+.+...+.... +++...+..+...+. +............+.++|+++|+
T Consensus 342 ~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~vt~~~i~ 420 (939)
T 1q2l_A 342 RDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPVEHTLDAVNIADRYDAKAVK 420 (939)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCGGGTTTTTTCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCHHHHhcCchhhhccCHHHHH
Confidence 99999999999999975 9999999999999999987665 567777777765543 33222333345678999999999
Q ss_pred HHHHHhccCCCcEEEEEcCCCCC
Q psy5653 703 EVCTKYIWDRCPVVAAVGPTEQL 725 (740)
Q Consensus 703 ~~~~~~l~~~~~~~~v~g~~~~i 725 (740)
++++. +.+++.+++++||....
T Consensus 421 ~~~~~-l~~~~~~~~~~~p~~~~ 442 (939)
T 1q2l_A 421 ERLAM-MTPQNARIWYISPKEPH 442 (939)
T ss_dssp HHHHH-CSGGGCEEEEECTTCCC
T ss_pred HHHHh-cCHHHcEEEEEcCCCCC
Confidence 99987 67788999999997653
No 17
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=2.4e-36 Score=327.59 Aligned_cols=375 Identities=13% Similarity=0.089 Sum_probs=296.7
Q ss_pred ecccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHH----hcCeeeEEecceEEEEEEEecC---CChHHHHHHH
Q psy5653 335 EDIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVEN----IGAHLNAYTSREQTVFYAKCLK---QDVPKAVEIL 406 (740)
Q Consensus 335 ~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~----~g~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~l 406 (740)
...|+..++.+..|..|.++| +|.||.+++..++...++. .|+.+|++++.+.+.|.+++++ ++++.+|+++
T Consensus 56 ~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll 135 (492)
T 3go9_A 56 VNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWL 135 (492)
T ss_dssp ESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHH
T ss_pred EecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHH
Confidence 366888888889999999999 8999999999999987663 6889999999999999999998 5699999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCC
Q psy5653 407 ADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPA 486 (740)
Q Consensus 407 ~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~ 486 (740)
.+++.+|.|++++|+++|..+.++++....+|....+ ...+++.++++++..+ +.|++++.++|++||++||.|+
T Consensus 136 ~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~ 210 (492)
T 3go9_A 136 SDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSSLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPD 210 (492)
T ss_dssp HHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTSTTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCCcccCCCch--hhhhcCCHHHHHHHHHHhcCcC
Confidence 9999999999999999998777666655556654333 2345666666665533 5789999999999999999999
Q ss_pred ceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEeecCCCCCCChHHH--
Q psy5653 487 RMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPL-- 564 (740)
Q Consensus 487 ~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 564 (740)
|++++|+||++++++.++++++|+.|+.+...+.+...+ .+.....+.+...+..++++.++|+.+...+++..++
T Consensus 211 n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~ 288 (492)
T 3go9_A 211 AMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATL--APLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSR 288 (492)
T ss_dssp GEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCC--CCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHH
T ss_pred ceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHH
Confidence 999999999999999999999999998765322111111 1122233333344567999999999998888887665
Q ss_pred ----HHHHHhhcCCCCCCCCCCCcccHHHHHHHh--c-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Q psy5653 565 ----MVANTLIGAWDRSQGSGTNNASRLAAITAE--Q-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWI 637 (740)
Q Consensus 565 ----~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~--~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (740)
.|++.+|| ++|+..||+ + |++|++++++....+.+ .+++.+++++++++++.+.++++
T Consensus 289 ~~~~~v~~~iLg-------------~~L~~~lre~~~~gl~y~~~s~~~~~~~~~--~~~i~~~~~~~~~a~~~i~~el~ 353 (492)
T 3go9_A 289 YWRSDLAREALF-------------WHIKQVLEKNNQKNLKLGFDCRVQYQRAQC--AIHLNTPVENLTANMTFVARELA 353 (492)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHHHHSCCTTCEEEEEEEEETTEEEE--EEEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHhhccccccccCchhhhhhcce--EEEEEcCcccHHHHHHHHHHHHH
Confidence 79999995 699999998 5 99999998876554444 35556688899999999999999
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHHHHHhCCCC---ChHH-HHHHHcccCHHHHHHHHHH
Q psy5653 638 RLCK-TVTPAEVERAKNLLKSNLFLQLD-----GTTPVCEDIGRQILCYGRRV---PLHE-LEARIDDVTAKDIHEVCTK 707 (740)
Q Consensus 638 ~l~~-~~s~~el~~~k~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~i~~vT~edv~~~~~~ 707 (740)
++.+ ++|++||+++|+.+++++....+ ++...++.++..+..+.... ++.+ +.+.|.+||++||++++++
T Consensus 354 ~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~ 433 (492)
T 3go9_A 354 ALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQ 433 (492)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9975 99999999999999999887654 45667777766555543332 3322 3366999999999999999
Q ss_pred hccCCCcEEEEEcCCCCCCC-HHHHH
Q psy5653 708 YIWDRCPVVAAVGPTEQLPD-YTWLR 732 (740)
Q Consensus 708 ~l~~~~~~~~v~g~~~~i~~-~~~~~ 732 (740)
|+.+ +..++++|++..++. .+.+.
T Consensus 434 ~l~~-~~~~vvvg~~~~~e~~~~~l~ 458 (492)
T 3go9_A 434 QLSQ-DTTLVLMQPKGEPEVNVKALQ 458 (492)
T ss_dssp HHTS-CCEEEEEEETTSCCCCHHHHH
T ss_pred HhCC-CCeEEEEcCCCCCCccHHHHH
Confidence 9986 477888888888764 54443
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.1e-35 Score=352.49 Aligned_cols=394 Identities=12% Similarity=0.096 Sum_probs=319.3
Q ss_pred cceEEEeccCCCCceecccceecccCCccchhhHHH-hhccCCCCChhHHH-HHHHH-hcCeeeEEecceEEEEEEEecC
Q psy5653 320 KSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLE-LEVEN-IGAHLNAYTSREQTVFYAKCLK 396 (740)
Q Consensus 320 ~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~-~~l~~-~g~~~~~~~~~~~~~~~~~~~~ 396 (740)
+..+++..++..+.+..+|....+.+..|.+|.++| +|+||.+++..++. ..+.. .|+.+|++|+.+.|.|.+.+.+
T Consensus 46 Gl~v~~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~ 125 (995)
T 2fge_A 46 GCEVMSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTN 125 (995)
T ss_dssp CCEEEEEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESS
T ss_pred CCEEEEEEcCCCccEEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCC
Confidence 345677778888888888988888899999999999 89999999988754 44443 6889999999999999998764
Q ss_pred -CChHHHHHHHHHHHhcCCC--CHHHHHHH---------------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCC
Q psy5653 397 -QDVPKAVEILADIIQNSKL--GQAEIERE---------------RGVILREMQEVETNLQEVVFDHLHATAFQGTPLGN 458 (740)
Q Consensus 397 -~~l~~~l~~l~~~l~~~~~--~~~~~~~~---------------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 458 (740)
++++.+|+++.+++.+|.| +++.|+++ |.++.+|++...++|..++...+...+|++|||++
T Consensus 126 ~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~ 205 (995)
T 2fge_A 126 TKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGV 205 (995)
T ss_dssp HHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCC
Confidence 6899999999999999999 99999999 89999999998899999999999999999999999
Q ss_pred CCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCC--CCCCCCCCCCCCCCcccCCC---
Q psy5653 459 TILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVK--PPNVDCAGVVPPAHCRYTGS--- 533 (740)
Q Consensus 459 ~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~--~~~~~~~~~~~~~~~~~~~~--- 533 (740)
...|+.++|.+++.++|++||++||.|+||+++|+||++++++.++++++|+.|+ ....+......+ +....
T Consensus 206 ~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~---~~~~~~~~ 282 (995)
T 2fge_A 206 DSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQK---LFSEPVRL 282 (995)
T ss_dssp CTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCCCC---CCSSCEEE
T ss_pred CCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCC---CCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999998 432111100111 11111
Q ss_pred eeEE-e---CCCCCceeEEEEeecCCCC--CCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEee-cc
Q psy5653 534 DVRV-R---DDAMPLAHVALAVEGCGWE--SADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSF-NT 606 (740)
Q Consensus 534 ~~~~-~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~-~~ 606 (740)
.... . .+...++.+.++|+.+... +++..++.+++.+|| +|+ ++||++.||++|++|+++++ +.
T Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg-------~~~--~S~L~~~l~e~gl~~~~~~~~~~ 353 (995)
T 2fge_A 283 VEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLML-------GTP--ASPLRKILLESGLGEALVSSGLS 353 (995)
T ss_dssp EEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHH-------SST--TSHHHHHHHHTTSCSEECSCEEE
T ss_pred EEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHc-------CCC--CCHHHHHHHhcCCCcceeecccc
Confidence 1122 1 3445689999999988766 478999999999997 344 89999999999999999875 55
Q ss_pred cCCCCceEEEEE-EeCCCCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhc--cChH--HHHHHHHHHHHHh
Q psy5653 607 CYKDTGLWGVYF-VADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQL--DGTT--PVCEDIGRQILCY 680 (740)
Q Consensus 607 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 680 (740)
.....+.|.+.+ .+++++++++++.+.++++++.+ |++++||+++|+.+...+.... +++. ..+..+...+..+
T Consensus 354 ~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (995)
T 2fge_A 354 DELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYD 433 (995)
T ss_dssp CSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTT
T ss_pred ccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcC
Confidence 445578888764 57889999999999999999975 9999999999999998887644 2344 3445555555555
Q ss_pred CCCCChHHHHHHHcccCH----H----HHHHHHHHhccCC-CcEEEEEcCCCCC
Q psy5653 681 GRRVPLHELEARIDDVTA----K----DIHEVCTKYIWDR-CPVVAAVGPTEQL 725 (740)
Q Consensus 681 ~~~~~~~~~~~~i~~vT~----e----dv~~~~~~~l~~~-~~~~~v~g~~~~i 725 (740)
+.+....++.+.++.+++ + +|++++++|+.++ +..+++++|....
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~ 487 (995)
T 2fge_A 434 MDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEK 487 (995)
T ss_dssp SCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTH
T ss_pred CChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCccH
Confidence 555554444566665555 8 8999999999754 5678888886543
No 19
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.4e-34 Score=336.09 Aligned_cols=394 Identities=13% Similarity=0.121 Sum_probs=313.3
Q ss_pred eEEEeccCCCC---ceecccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHH--hcCeeeEEecceEEEEEEEec
Q psy5653 322 NLFLQLDGTTP---VCEDIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVEN--IGAHLNAYTSREQTVFYAKCL 395 (740)
Q Consensus 322 ~~~~~~d~~~~---~~~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~--~g~~~~~~~~~~~~~~~~~~~ 395 (740)
.+++..++..+ .+..+|....+.+..|.+|.++| +|+||.+++..++...+.. .|+.+|++|+.+.|.|.++++
T Consensus 97 ~vl~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~ 176 (1193)
T 3s5m_A 97 QVISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSM 176 (1193)
T ss_dssp EEEEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEES
T ss_pred EEEEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEec
Confidence 44444444432 44567888888899999999999 8999999999999999998 789999999999999999988
Q ss_pred C-CChHHHHHHHHHHHhcCCCCHHH--HHHH-----------------------------HHHHHHHHHHhhCCHHHHHH
Q psy5653 396 K-QDVPKAVEILADIIQNSKLGQAE--IERE-----------------------------RGVILREMQEVETNLQEVVF 443 (740)
Q Consensus 396 ~-~~l~~~l~~l~~~l~~~~~~~~~--~~~~-----------------------------k~~~~~~~~~~~~~p~~~~~ 443 (740)
+ ++++.+|+++.+++.+|.|++++ |..+ |.++.+|++...++|..++.
T Consensus 177 ~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~ 256 (1193)
T 3s5m_A 177 NNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLY 256 (1193)
T ss_dssp SHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHH
Confidence 8 89999999999999999998887 8776 57899999988999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCC--C
Q psy5653 444 DHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCA--G 521 (740)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~--~ 521 (740)
..+...+|++|||+++..|+.++|.++|.++|++||++||.|+|++++|+||++++++.++++++|+.|+.++.+.. +
T Consensus 257 ~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~ 336 (1193)
T 3s5m_A 257 HEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVE 336 (1193)
T ss_dssp HHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCC
T ss_pred HHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986543211 1
Q ss_pred CCCCCCcccCCCeeEEe---CCCCCceeEEEEeecCCC-----C-----------------------------CCChHHH
Q psy5653 522 VVPPAHCRYTGSDVRVR---DDAMPLAHVALAVEGCGW-----E-----------------------------SADNIPL 564 (740)
Q Consensus 522 ~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~-----------------------------~~~~~~~ 564 (740)
..++.+.......+... .+...++++.++|..++. + +++..++
T Consensus 337 ~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al 416 (1193)
T 3s5m_A 337 SVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVL 416 (1193)
T ss_dssp CCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHH
T ss_pred ccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHH
Confidence 11110011112222221 134568999999998752 2 3678899
Q ss_pred HHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEE-eecccCCCCceEEEEEE-eCCCC--------H-HHHHHHHH
Q psy5653 565 MVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQ-SFNTCYKDTGLWGVYFV-ADRMQ--------L-EDMTFSVQ 633 (740)
Q Consensus 565 ~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~-~~~~~~~~~~~~~~~~~-~~~~~--------~-~~~~~~~~ 633 (740)
.||+.+|| ||+ +||||+.||++|++|+++ +++......+.|.+++. +++++ + +++.+.+.
T Consensus 417 ~vL~~iLg-------gg~--sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~ 487 (1193)
T 3s5m_A 417 LIINNLLI-------HTP--ESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIM 487 (1193)
T ss_dssp HHHHHHHH-------SST--TSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHC-------CCC--CCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHH
Confidence 99999998 444 999999999999999998 66666666778888875 55544 6 69999999
Q ss_pred HHHHHhhc-CCCHHHHHHHHHHHHHHHHHh-ccChHHH--HHHHHHHHHHhCCCCC---hHHHHHHHcccC---HHHHHH
Q psy5653 634 HEWIRLCK-TVTPAEVERAKNLLKSNLFLQ-LDGTTPV--CEDIGRQILCYGRRVP---LHELEARIDDVT---AKDIHE 703 (740)
Q Consensus 634 ~~~~~l~~-~~s~~el~~~k~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~i~~vT---~edv~~ 703 (740)
+.++++.+ |+++++++++|+.+...+... ..++... +..+...+...+++.. +.+.++.++..+ ++++.+
T Consensus 488 ~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~ 567 (1193)
T 3s5m_A 488 NALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEK 567 (1193)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHH
Confidence 99999975 999999999999999888764 3344433 3344455666676665 456666666554 459999
Q ss_pred HHHHhccCC-CcEEEEEcCCCC
Q psy5653 704 VCTKYIWDR-CPVVAAVGPTEQ 724 (740)
Q Consensus 704 ~~~~~l~~~-~~~~~v~g~~~~ 724 (740)
++++||..+ +..++++-|...
T Consensus 568 li~~yll~n~~~~~~~~~P~~~ 589 (1193)
T 3s5m_A 568 FVEKHFINNAHRSVILLEGDEN 589 (1193)
T ss_dssp HHHHHTTTCCCEEEEEEEEESS
T ss_pred HHHHHhccCCceEEEEEEcCCC
Confidence 999998544 446666677653
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=4.4e-34 Score=338.94 Aligned_cols=392 Identities=17% Similarity=0.137 Sum_probs=318.0
Q ss_pred ceEEEeccCCCCce-----ecccceecccCCccchhhHHH-hhccCCCCCh-hHHHHHHHHhcCeeeEEecceEEEEEEE
Q psy5653 321 SNLFLQLDGTTPVC-----EDIGRQILCYGRRVPLHELEA-RIDGTSKRSQ-TDLELEVENIGAHLNAYTSREQTVFYAK 393 (740)
Q Consensus 321 ~~~~~~~d~~~~~~-----~~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~-~~l~~~l~~~g~~~~~~~~~~~~~~~~~ 393 (740)
..+++..++..+.+ ..+|+..++.+..|.+|.++| +|+||.+++. .++...++..|+.+|++|+.+.|.|.++
T Consensus 44 l~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~ 123 (990)
T 3cww_A 44 IKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFD 123 (990)
T ss_dssp CEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEE
T ss_pred CEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEE
Confidence 34566777776665 467998889999999999999 8999999997 7999999999999999999999999999
Q ss_pred ecCCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccC---
Q psy5653 394 CLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSL--- 470 (740)
Q Consensus 394 ~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--- 470 (740)
+++++++.+|+++.+++.+|.|+++.|+++|..+.+|++...++|..++...+...++++|||++...|..+.|..+
T Consensus 124 ~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~ 203 (990)
T 3cww_A 124 VSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQ 203 (990)
T ss_dssp EEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhcccc
Confidence 99999999999999999999999999999999999999988889999888888888999999999999999999999
Q ss_pred ----CHHHHHHHHHhhccCCceEEEEEcCCCHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCcee
Q psy5653 471 ----QRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAH 546 (740)
Q Consensus 471 ----t~e~l~~~~~~~~~~~~~~~~i~G~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (740)
+.++|++||++||.|+||+++|+||++.+++.++++++|+.|+....+......++.............+..+++.
T Consensus 204 ~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (990)
T 3cww_A 204 EGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDIRN 283 (990)
T ss_dssp TTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEECCSSSCCE
T ss_pred ccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcCeEEEEEECCCCcE
Confidence 9999999999999999999999999999999999999999998764332111111000111112223334456889
Q ss_pred EEEEeecCCCC-CCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeeccc-CCCCceEEEEEEeCC--
Q psy5653 547 VALAVEGCGWE-SADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTC-YKDTGLWGVYFVADR-- 622 (740)
Q Consensus 547 v~~~~~~~~~~-~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~-~~~~~~~~~~~~~~~-- 622 (740)
+.++|+.+... ..+..++.+++.+||+ +|. ++ |+..||++|++|+++++... ..+.+.|.+++.+.+
T Consensus 284 l~~~~~~~~~~~~~~~~~~~~l~~lLg~------~~~--~s-l~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g 354 (990)
T 3cww_A 284 LYVTFPIPDLQKYYKSNPGHYLGHLIGH------EGP--GS-LLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEG 354 (990)
T ss_dssp EEEEEEECCCGGGTTTCHHHHHHHHHTC------CST--TC-HHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHH
T ss_pred EEEEEEcCChhhhhhhCHHHHHHHHhcC------CCC--Cc-HHHHHHHCCCcceeeeccccCCCCccEEEEEEEEChHH
Confidence 99999998766 3678889999999973 232 34 67799999999999887654 344678888888653
Q ss_pred -CCHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHH
Q psy5653 623 -MQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQ-LDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAK 699 (740)
Q Consensus 623 -~~~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~e 699 (740)
++++++++.+.+.++++.+ |+++++|++++......+... .+++...+..+... ..+..+.+.....+.+.++|++
T Consensus 355 ~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~t~~ 433 (990)
T 3cww_A 355 LLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGI-LHYYPLEEVLTAEYLLEEFRPD 433 (990)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH-TTTSCGGGTTTTTTCCCCCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHH-HhhCCHHHHhccchhhhcCCHH
Confidence 4999999999999999975 999999999998877776653 35676666666443 3333333333445778999999
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCC
Q psy5653 700 DIHEVCTKYIWDRCPVVAAVGPTE 723 (740)
Q Consensus 700 dv~~~~~~~l~~~~~~~~v~g~~~ 723 (740)
+|+++++. +.+++.+++++||..
T Consensus 434 ~i~~~~~~-l~~~~~~~~~~~p~~ 456 (990)
T 3cww_A 434 LIEMVLDK-LRPENVRVAIVSKSF 456 (990)
T ss_dssp HHHHHHTT-CSGGGCEEEEECGGG
T ss_pred HHHHHHHh-cCHhHEEEEEEcCCC
Confidence 99999985 556777899999853
No 21
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=6.9e-32 Score=281.55 Aligned_cols=328 Identities=20% Similarity=0.232 Sum_probs=265.6
Q ss_pred cccceecccCCccchhhHHH-hhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcCC
Q psy5653 336 DIGRQILCYGRRVPLHELEA-RIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK 414 (740)
Q Consensus 336 ~ig~~~~~~~~~~~~~~l~~-~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 414 (740)
..|...+ +..+..|.++| +|.||.+++..++.+.++..|+++|++++.+.+.|++++++++++.+|+++.+++.+|.
T Consensus 20 ~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~ 97 (352)
T 3cx5_B 20 HGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTA 97 (352)
T ss_dssp SCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBC
T ss_pred eeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHHHHHHhCCC
Confidence 4466553 57789999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHH-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEE
Q psy5653 415 LGQAEIE-RERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGA 493 (740)
Q Consensus 415 ~~~~~~~-~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~ 493 (740)
|++++|+ ++|+.++++++...++|..++...+...+|+ +||+++.. .+.|++++.++|++||++||.|+|++++|+
T Consensus 98 f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it~~~l~~f~~~~y~~~n~~l~v~ 174 (352)
T 3cx5_B 98 FKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQDIKDFADKVYTKENLEVSGE 174 (352)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCCHHHHHHHHHHHCCGGGEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCCHHHHHHHHHHhCCcCcEEEEEe
Confidence 9999998 9999999999988999999999999999997 89998774 689999999999999999999999999999
Q ss_pred cCCCHHHHHHHH-HHhhCCCCCCCCCCCCCCCCCCcccCCCeeEEeCCCCCceeEEEEeecCCCCCCChHHHHHHHHhhc
Q psy5653 494 GGVDHDTLVKLA-KEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIG 572 (740)
Q Consensus 494 G~~~~~~~~~~v-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~ 572 (740)
| ++++++.+++ +++|+.|+....+.... .+ ....+....+.. ..++.+.+++ +.++++..++.|++.+||
T Consensus 175 G-~~~~~~~~~i~~~~f~~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~l~vl~~iLg 245 (352)
T 3cx5_B 175 N-VVEADLKRFVDESLLSTLPAGKSLVSKS-EP--KFFLGEENRVRF--IGDSVAAIGI---PVNKASLAQYEVLANYLT 245 (352)
T ss_dssp S-SCHHHHHHHHHHSTTTTSCCCCCCCCCS-CC--CCCCSCEEEEEC--SSSEEEEEEE---EECTTTHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHhhccCCCCCCCCCCC-CC--CCccCCeEEEec--CCCceEEEec---CCCChhHHHHHHHHHHhC
Confidence 9 9999999999 89999998654322111 11 122233333433 2456665554 345689999999999996
Q ss_pred CCCCCCCCCCCcccHHHHHHHhc-CCeEEEEeecccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhhcCCCHHHHHHH
Q psy5653 573 AWDRSQGSGTNNASRLAAITAEQ-GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERA 651 (740)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~lR~~-gl~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~el~~~ 651 (740)
. .||++ |++ +++++..+.+.|.|.++++++ +.+++.+.+.+.++. ++|++||+++
T Consensus 246 ------------~-----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~~---~~t~~el~~a 301 (352)
T 3cx5_B 246 ------------S-----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVAD---LKKGKDLSPA 301 (352)
T ss_dssp ------------S-----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHHH---HHSCEECGGG
T ss_pred ------------c-----chhcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHHh---cCCHHHHHHH
Confidence 3 67875 776 444444445678888888876 667777777766644 5899999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCHHHHHHHHHHhccCCCcEEEEEcCCCCCCCHHH
Q psy5653 652 KNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQLPDYTW 730 (740)
Q Consensus 652 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edv~~~~~~~l~~~~~~~~v~g~~~~i~~~~~ 730 (740)
|+.++.++....+++ +...++ .|++||. ++ + ++++++++||..++|++++
T Consensus 302 k~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~-------~~-~--~~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 302 INYTKLKNAVQNESV--------------SSPIEL-----NFDAVKD-------FK-L--GKFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp HHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCE-------EC-C--CSCEEEEEESGGGSCCGGG
T ss_pred HHHHHHHHHhhhhcc--------------CCccce-----eeeeeeH-------hh-c--CCceEEEEccccccCcccc
Confidence 999999998887763 222333 5888992 22 4 7899999999999998764
No 22
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=99.94 E-value=8.7e-26 Score=240.13 Aligned_cols=339 Identities=16% Similarity=0.183 Sum_probs=247.9
Q ss_pred cEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-------------------
Q psy5653 22 TQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI------------------- 81 (740)
Q Consensus 22 ~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~------------------- 81 (740)
+++++|+|||+|+ ++++..|.++++++|++||++||++..|+|||+|||+|+||++++..
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 6889999999999 77788899999999999999999999999999999999999987431
Q ss_pred ---------CCCCcchhhhhhhhhhhcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCCccccccH
Q psy5653 82 ---------KPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNGRNIVLSN 140 (740)
Q Consensus 82 ---------~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~~~~~~~~ 140 (740)
+.+.....+.++.+.++|.|++++++++++ .+.+|++. +...+++.++++++..|+.
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~~p~f~~~~~~~ek~--~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~ 159 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLLRPALREEDFQTEKL--VILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTR 159 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHTSCCCCHHHHHHHHH--HHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 222344444556664478899999999999 88888665 4567788899999999999
Q ss_pred HHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccCC--CCCCCCC-CCccC
Q psy5653 141 REIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVISG--RSTPSDS-GSCSG 205 (740)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 205 (740)
..+..++..++..++..++++... +.+.+.+.|+.|+.++.... ........ .....+. .+..+
T Consensus 160 ~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~ 238 (406)
T 3eoq_A 160 ESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERA-YPPLTPAFGVEERPYEKARALYL 238 (406)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCC-CCCCCCCCEEEEEECTTCSSEEE
T ss_pred HHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCC-CCCCCCCCceEEEecCCccceEE
Confidence 999999999999999999886333 56677889999985443211 00000000 0011223 67778
Q ss_pred cccCCCCCCCchhh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceeeeecCchhHH
Q psy5653 206 DIISPTEPLSLTDS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYMHIKPNEVRQ 280 (740)
Q Consensus 206 ~~~~~~~~~~~~~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~ 280 (740)
.++.+.+++.++++ +.+++.+||+ |||++.+|+ ++.+|...+.
T Consensus 239 ~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre-~gl~y~~~s~------------------------------- 286 (406)
T 3eoq_A 239 VALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVD-KGLAEVASFG------------------------------- 286 (406)
T ss_dssp EEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTT-TTSEEEEEEE-------------------------------
T ss_pred EEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHH-cCCeeEEEEE-------------------------------
Confidence 88888888888888 6779999986 567666655 4322211100
Q ss_pred hhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchhhHHHhhccC
Q psy5653 281 RKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDGT 360 (740)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~~~~~gt 360 (740)
T Consensus 287 -------------------------------------------------------------------------------- 286 (406)
T 3eoq_A 287 -------------------------------------------------------------------------------- 286 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhhCC
Q psy5653 361 SKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQN---SKLGQAEIERERGVILREMQEVETN 437 (740)
Q Consensus 361 ~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~~~~~~~~~k~~~~~~~~~~~~~ 437 (740)
+..+.....+.+.+.+.+++.+.+++.+.+.+.. -.++++++++.|..++..+....++
T Consensus 287 ------------------~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~ 348 (406)
T 3eoq_A 287 ------------------LEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGET 348 (406)
T ss_dssp ------------------EEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred ------------------ecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 0000111234455566667778887777776654 3699999999999999999877888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCC
Q psy5653 438 LQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGV 496 (740)
Q Consensus 438 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~ 496 (740)
+..++.......++.+.+. ......+.|+++|.++++++.++++.+.++ ++++|+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 349 PMQRLFHLGMEYLYTGRYL--SLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp HHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhCCHHHHHHHHHHhcCcccE-EEEECCC
Confidence 8888877777666543221 122345779999999999999999999999 9999975
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.93 E-value=5.4e-25 Score=235.39 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=248.1
Q ss_pred cEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-------------------
Q psy5653 22 TQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI------------------- 81 (740)
Q Consensus 22 ~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~------------------- 81 (740)
|+.++|+||++|+ ++++..|.++++++|++||++||+++.|+|||+|||+|+||++++..
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 7899999999999 77788899999999999999999999999999999999999987421
Q ss_pred ---------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCCcccccc
Q psy5653 82 ---------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNGRNIVLS 139 (740)
Q Consensus 82 ---------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~~~~~~~ 139 (740)
+.+.....+.++.+.+ +|.|++++++++++ .+.+|++. +...+++.++++++..++
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~--~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 159 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERK--VVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGT 159 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCC
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 1224444455567766 79999999999999 88888665 356677788999999999
Q ss_pred HHHHHHhhHhhhhHHHhhhhccc-----------hHHHHHHHHHhccCCCCCcccccccccccCCC--CCCCCCCCccCc
Q psy5653 140 NREIRLLRYLELTEEEKEKVKAS-----------YKVARKLEKLEGRNREGEEGEMLSLDSVISGR--STPSDSGSCSGD 206 (740)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 206 (740)
..++..++..++..++..++.+. -.+.+.+++.|+.|+.++......... .... ....+..+..+.
T Consensus 160 ~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~v~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~v~ 238 (421)
T 3hdi_A 160 VETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPM-FLPNRIVRKKETEQAHLC 238 (421)
T ss_dssp HHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCCHHHHHHHHHHTTSSCCCCCCCCCCCCC-CCCCEEEEECCCSEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCCHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCceEEecCCCCceEEE
Confidence 99999999999999999988852 225666788999997544221110000 0000 011234566677
Q ss_pred ccCCCCCCCchhh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceeeeecCchhHHh
Q psy5653 207 IISPTEPLSLTDS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYMHIKPNEVRQR 281 (740)
Q Consensus 207 ~~~~~~~~~~~~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~ 281 (740)
++.+..++.++++ +.+++.+||+ ++|.+.+|++++.+|...+..
T Consensus 239 ~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~------------------------------- 287 (421)
T 3hdi_A 239 LGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYH------------------------------- 287 (421)
T ss_dssp EEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEE-------------------------------
T ss_pred EEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEee-------------------------------
Confidence 7777777888888 5779999987 677777766554322211000
Q ss_pred hhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchhhHHHhhccCC
Q psy5653 282 KKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDGTS 361 (740)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~~~~~gt~ 361 (740)
T Consensus 288 -------------------------------------------------------------------------------- 287 (421)
T 3hdi_A 288 -------------------------------------------------------------------------------- 287 (421)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhhCCH
Q psy5653 362 KRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQN---SKLGQAEIERERGVILREMQEVETNL 438 (740)
Q Consensus 362 ~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~~~~~~~~~k~~~~~~~~~~~~~p 438 (740)
..+.....+.+.+.+.+++++.+++.+.+.+.+ -.++++++++.|..++..+.....++
T Consensus 288 ------------------~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~ 349 (421)
T 3hdi_A 288 ------------------SSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLEST 349 (421)
T ss_dssp ------------------EECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------cccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCH
Confidence 000011234455566667788887777776654 47999999999999999998777888
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCC
Q psy5653 439 QEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497 (740)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~ 497 (740)
...+.......++.+.+. ......+.|.++|.+|++++.++++ +.+++++++|+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 350 NSRMSRNGKNELLLKKHR--SLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHHHHHHHTSCCC--CHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCC--CHHHHHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 887776666555543221 1223457799999999999999999 9999999999753
No 24
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.92 E-value=2.8e-23 Score=223.74 Aligned_cols=361 Identities=21% Similarity=0.233 Sum_probs=242.5
Q ss_pred cCCCCCCcEEEEccCCCEEEEecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-------------
Q psy5653 15 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI------------- 81 (740)
Q Consensus 15 ~~~~~~~~~~~~l~nGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~------------- 81 (740)
+....|.+++.+|+||++|++.+...+.+.++++|++||++||+++.|+|||+|||+|+||++++..
T Consensus 7 ~~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~ 86 (446)
T 1pp9_A 7 ALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHL 86 (446)
T ss_dssp HHTTSCCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEE
T ss_pred ccccccCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEE
Confidence 3455688999999999999955555789999999999999999999999999999999999987531
Q ss_pred ---------------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCC
Q psy5653 82 ---------------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNG 133 (740)
Q Consensus 82 ---------------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~ 133 (740)
+.+.....+.++.+.+ +|.|++++++++++ .|.+|+.. +...+++.++++
T Consensus 87 na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~--~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (446)
T 1pp9_A 87 NAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD--VILQELQENDTSMRDVVFNYLHATAFQGTPLA 164 (446)
T ss_dssp EEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGG
T ss_pred EEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCC
Confidence 1123444455567766 79999999999999 89888665 345667778999
Q ss_pred ccccccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCccccccc--ccccCCCC---C
Q psy5653 134 RNIVLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSL--DSVISGRS---T 196 (740)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~ 196 (740)
++..++.+++..++..++..++..++++... +.+.+.+.|+.|+.++....... ...+.... .
T Consensus 165 ~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1pp9_A 165 QSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHR 244 (446)
T ss_dssp SCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEE
T ss_pred CCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEe
Confidence 9999999999999999999999998886332 46666888998875432211111 01000000 0
Q ss_pred CCCCCCccCcccCCCCCCCchhh--HHHHHHHhccchhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceeeeec
Q psy5653 197 PSDSGSCSGDIISPTEPLSLTDS--MLLMDDILSDSRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYMHIK 274 (740)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (740)
.....+..+.++.+..++.++++ +.+++.+||+.+- ..+ ... . ..+++
T Consensus 245 ~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~------~~~---~g~------~-~~srL-------------- 294 (446)
T 1pp9_A 245 EDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDC------TYG---GGA------H-LSSPL-------------- 294 (446)
T ss_dssp ETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEET------TCS---CGG------G-CSSHH--------------
T ss_pred cCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcc------cCC---CCC------C-CCCHH--------------
Confidence 11234566667777777788887 5779999986310 000 000 0 00111
Q ss_pred CchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchhhHH
Q psy5653 275 PNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354 (740)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~ 354 (740)
.+++ + +..+...+
T Consensus 295 ----------------------~~~l-------------r-~~glay~~------------------------------- 307 (446)
T 1pp9_A 295 ----------------------ASIA-------------A-TNKLCQSF------------------------------- 307 (446)
T ss_dssp ----------------------HHHH-------------H-HHTCCSEE-------------------------------
T ss_pred ----------------------HHHH-------------H-hcCCeEEE-------------------------------
Confidence 0000 0 00000000
Q ss_pred HhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHH
Q psy5653 355 ARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNS--KLGQAEIERERGVILREMQ 432 (740)
Q Consensus 355 ~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~--~~~~~~~~~~k~~~~~~~~ 432 (740)
++.+..+.....+.+.+.+.+++++.+++.+.+.+... .++++++++.|..++..+.
T Consensus 308 ---------------------~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~ 366 (446)
T 1pp9_A 308 ---------------------QTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALV 366 (446)
T ss_dssp ---------------------EEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ---------------------EEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 00000011112345556666788888888777655331 3999999999999999997
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCC
Q psy5653 433 EVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497 (740)
Q Consensus 433 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~ 497 (740)
....++...+.......++.+.+.. .....+.|.++|.++++++.++++.+.+.+++++|+.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 367 SHLDGTTPVCEDIGRSLLTYGRRIP--LAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHSCSHHHHHHHHHHHHHHTSSCCC--HHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 7778888777665555433232322 22235678999999999999999999999999999864
No 25
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=99.92 E-value=1.3e-23 Score=226.27 Aligned_cols=345 Identities=15% Similarity=0.103 Sum_probs=241.3
Q ss_pred CCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc-----------------
Q psy5653 20 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI----------------- 81 (740)
Q Consensus 20 ~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~----------------- 81 (740)
+.++.++|+||++|+ ++++..|.+.++++|++||++||++..|+|||+|||+|+||++++..
T Consensus 5 ~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t 84 (445)
T 3ami_A 5 ASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFT 84 (445)
T ss_dssp GGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEE
T ss_pred cCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCcccccc
Confidence 568999999999999 77788999999999999999999999999999999999999987531
Q ss_pred -----------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHH-H------------HHHHHhhcCCCCccc
Q psy5653 82 -----------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVA-D------------LKLKLAACTQNGRNI 136 (740)
Q Consensus 82 -----------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~-~------------~~~~~~~~~~~~~~~ 136 (740)
+.+.....+.++.+.+ +|.|++++++++++ .+.+|++ . +...+++.++++++.
T Consensus 85 ~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~--~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~ 162 (445)
T 3ami_A 85 TRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQ--VIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPV 162 (445)
T ss_dssp CSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHH--HHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCT
T ss_pred CCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCC
Confidence 1224444555567766 79999999999999 8888876 2 345667778999988
Q ss_pred cccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccCCCC----CCCCC
Q psy5653 137 VLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVISGRS----TPSDS 200 (740)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 200 (740)
.|+..++..++..++..++..++.+... +.+++.+.|+.|+.++.........+..... ...+.
T Consensus 163 ~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (445)
T 3ami_A 163 IGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPA 242 (445)
T ss_dssp TCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEEC
T ss_pred CCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCC
Confidence 8999999999999999999999886322 5667788999887543221110000100000 01123
Q ss_pred CCccCcccCCCCC---CC-chhh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceee
Q psy5653 201 GSCSGDIISPTEP---LS-LTDS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYM 271 (740)
Q Consensus 201 ~~~~~~~~~~~~~---~~-~~~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (740)
.+..+.++++... +. ++++ +.+++.+||+ |||++.+|++++.+|...+.+.
T Consensus 243 ~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~-------------------- 302 (445)
T 3ami_A 243 ELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYD-------------------- 302 (445)
T ss_dssp SSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECC--------------------
T ss_pred CccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeecc--------------------
Confidence 4555666666555 66 7777 5778899986 5665555433321111110000
Q ss_pred eecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchh
Q psy5653 272 HIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLH 351 (740)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~ 351 (740)
.
T Consensus 303 ---------------------------------------------------------~---------------------- 303 (445)
T 3ami_A 303 ---------------------------------------------------------S---------------------- 303 (445)
T ss_dssp ---------------------------------------------------------C----------------------
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred hHHHhhccCCCCChhHHHHHHHHhcCeeeEEec-ceEEEEEEEecCC-ChHHHHHHHHHHHhc---CCCCHHHHHHHHHH
Q psy5653 352 ELEARIDGTSKRSQTDLELEVENIGAHLNAYTS-REQTVFYAKCLKQ-DVPKAVEILADIIQN---SKLGQAEIERERGV 426 (740)
Q Consensus 352 ~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~-~l~~~l~~l~~~l~~---~~~~~~~~~~~k~~ 426 (740)
.... ...+.+.+.+.++ +.+.+++.+.+.+.. -.++++++++.|+.
T Consensus 304 -----------------------------~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~ 354 (445)
T 3ami_A 304 -----------------------------LSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQ 354 (445)
T ss_dssp -----------------------------CCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred -----------------------------cccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0000 1133455555555 477777777666554 35999999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCC
Q psy5653 427 ILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGV 496 (740)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~ 496 (740)
++..+.....++..++.......+++..+. ......+.|+++|.+++.++.++++.+.+++++++|.-
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~ 422 (445)
T 3ami_A 355 MVAGKVYEQDSLMGQATQIGGLEVLGLSWR--DDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPL 422 (445)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHTTTCCTT--HHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEE
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccC
Confidence 999998777888887776666666543211 11223567899999999999999999999999999953
No 26
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.91 E-value=1.7e-23 Score=227.08 Aligned_cols=345 Identities=18% Similarity=0.211 Sum_probs=242.2
Q ss_pred CCCCcEEEEccCCCEEEEecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc----------------
Q psy5653 18 NVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI---------------- 81 (740)
Q Consensus 18 ~~~~~~~~~l~nGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~---------------- 81 (740)
.+|.++.++|+||++|++.+...|.+.++++|++||++|++++.|+|||+|||+|+||++++..
T Consensus 2 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~ 81 (475)
T 1hr6_A 2 RTDNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCT 81 (475)
T ss_dssp CTTCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 4578999999999999966666799999999999999999999999999999999999986521
Q ss_pred ------------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCCccc
Q psy5653 82 ------------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNGRNI 136 (740)
Q Consensus 82 ------------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~~~~ 136 (740)
+.+.....+.++.+.+ +|.|++++++++++ .|.+|++. +...+++.++++++.
T Consensus 82 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~--~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 159 (475)
T 1hr6_A 82 SSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKL--SAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPL 159 (475)
T ss_dssp ECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCS
T ss_pred EccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 2234444455566766 78999999999999 89888665 355677778899998
Q ss_pred cccHHHHHHhhHhhhhHHHhhhhccchH-----------HHHHHHHHhccCCCCCcccccccccccCC-----CCC---C
Q psy5653 137 VLSNREIRLLRYLELTEEEKEKVKASYK-----------VARKLEKLEGRNREGEEGEMLSLDSVISG-----RST---P 197 (740)
Q Consensus 137 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~ 197 (740)
.++...+..++..++..++..+|.+... +.+.+++.|+.|+.+...... ....+.. ... .
T Consensus 160 ~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 238 (475)
T 1hr6_A 160 ICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITK-KVAQYTGGESCIPPAPVFG 238 (475)
T ss_dssp SCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCC-CCCCCCCEEEEECCCCCCS
T ss_pred cCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCC-CCCCCcCCeEEEecccccC
Confidence 8999999999999999999998886432 566668889988754322000 0011100 000 0
Q ss_pred CCCCCccCcccCCCCCCCchhh--HHHHHHHhccc--------------hhhhhhHHHHHHHHHhhcccccccCCccchh
Q psy5653 198 SDSGSCSGDIISPTEPLSLTDS--MLLMDDILSDS--------------RLDQLDRIERIEAILTAENVAQIKPEYGPLL 261 (740)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~s--------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (740)
.+..+..+.++.+..++.++++ +.+++.+||+. +|++.+|++++
T Consensus 239 ~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~g-------------------- 298 (475)
T 1hr6_A 239 NLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYY-------------------- 298 (475)
T ss_dssp SSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCS--------------------
T ss_pred CCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcC--------------------
Confidence 2345566677777777888887 56788999863 22221111110
Q ss_pred hhhhccceeeeecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceeccccee
Q psy5653 262 VELSEEQVYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQI 341 (740)
Q Consensus 262 ~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~ 341 (740)
.++.++.
T Consensus 299 -----------------------------------------------------------------------l~y~v~s-- 305 (475)
T 1hr6_A 299 -----------------------------------------------------------------------FVENCVA-- 305 (475)
T ss_dssp -----------------------------------------------------------------------SEEEEEE--
T ss_pred -----------------------------------------------------------------------CeeEEEE--
Confidence 0000100
Q ss_pred cccCCccchhhHHHhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhcC------CC
Q psy5653 342 LCYGRRVPLHELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNS------KL 415 (740)
Q Consensus 342 ~~~~~~~~~~~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~------~~ 415 (740)
....+.....+.+.+.+.+++++.+++.+.+.+... .+
T Consensus 306 ------------------------------------~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 349 (475)
T 1hr6_A 306 ------------------------------------FNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRL 349 (475)
T ss_dssp ------------------------------------EEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCC
T ss_pred ------------------------------------eccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 001111123455666677788888888888777652 49
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccC---------C
Q psy5653 416 GQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQP---------A 486 (740)
Q Consensus 416 ~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~---------~ 486 (740)
++++|++.|..++..+.....++...+.......+..+.+.. .....+.|+++|.++++++.++++.+ .
T Consensus 350 t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~ 427 (475)
T 1hr6_A 350 TEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP--VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKG 427 (475)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCC
Confidence 999999999999999977777888877666665433232221 22245678999999999999999988 5
Q ss_pred ceEEEEEcCC
Q psy5653 487 RMVLSGAGGV 496 (740)
Q Consensus 487 ~~~~~i~G~~ 496 (740)
+++++++|+.
T Consensus 428 ~~~~~v~g~~ 437 (475)
T 1hr6_A 428 RATVVMQGDR 437 (475)
T ss_dssp CCEEEEESCG
T ss_pred CcEEEEECCc
Confidence 8999999986
No 27
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.90 E-value=3e-22 Score=215.70 Aligned_cols=357 Identities=20% Similarity=0.211 Sum_probs=238.4
Q ss_pred CCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc---------------
Q psy5653 18 NVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI--------------- 81 (740)
Q Consensus 18 ~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~--------------- 81 (740)
..|.++.++|+||++|+ ...+..+.+.+++++++||++||++..|+|||+|||+|+||++++..
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 45788999999999999 54455558999999999999999999999999999999999987421
Q ss_pred -------------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCCcc
Q psy5653 82 -------------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNGRN 135 (740)
Q Consensus 82 -------------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~~~ 135 (740)
+.+.....+.++.+.+ +|.|++++++++++ .+.+|++. +...+++.++++++
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~--~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERD--VIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRT 160 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSC
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCC
Confidence 2234455556677766 89999999999999 88888665 35566777889888
Q ss_pred ccccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCccccccc----ccccCCCC---C
Q psy5653 136 IVLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSL----DSVISGRS---T 196 (740)
Q Consensus 136 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~ 196 (740)
..++...+..++..++..++..++++... +.+.+.+.|+.|+.+........ ...+.... .
T Consensus 161 ~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (443)
T 1hr6_B 161 ILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIK 240 (443)
T ss_dssp SSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEE
T ss_pred CcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEec
Confidence 88999999999999999999998886322 46667888998875432211100 00000000 0
Q ss_pred CCCCCCccCcccCCCCCCCchhh--HHHHHHHhccchhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceeeeec
Q psy5653 197 PSDSGSCSGDIISPTEPLSLTDS--MLLMDDILSDSRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYMHIK 274 (740)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (740)
..+..+..+.++....++.++++ +.+++.+||+.. ++ .+ .. ....+++
T Consensus 241 ~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~-----r~-~~----~g------~~~~s~L-------------- 290 (443)
T 1hr6_B 241 ENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWD-----RA-IG----TG------TNSPSPL-------------- 290 (443)
T ss_dssp CTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEE-----TT-TB----CS------SSSCCHH--------------
T ss_pred cCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCc-----cc-CC----CC------CCcccHH--------------
Confidence 11245556667767777788887 567999998721 10 00 00 0000111
Q ss_pred CchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchhhHH
Q psy5653 275 PNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354 (740)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~ 354 (740)
.+++. .+..+... ++.
T Consensus 291 ----------------------~~~lr-------------e~~glay~--------------~~~--------------- 306 (443)
T 1hr6_B 291 ----------------------AVAAS-------------QNGSLANS--------------YMS--------------- 306 (443)
T ss_dssp ----------------------HHHHH-------------STTCSCSE--------------EEE---------------
T ss_pred ----------------------HHHHH-------------HHcCCeEE--------------EEe---------------
Confidence 00000 00000000 000
Q ss_pred HhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEec--CCChHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHH
Q psy5653 355 ARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCL--KQDVPKAVEILADII---QNSKLGQAEIERERGVILR 429 (740)
Q Consensus 355 ~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~l~~~l---~~~~~~~~~~~~~k~~~~~ 429 (740)
.+..+.....+.+.+.+. +++++.+++.+.+.+ .+..++++++++.|..++.
T Consensus 307 -----------------------~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~ 363 (443)
T 1hr6_B 307 -----------------------FSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKA 363 (443)
T ss_dssp -----------------------EEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------------eecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 000111122345556666 788888888877765 4456999999999999999
Q ss_pred HHHHhhCCHHHHHHHHHHHHh-cCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCC
Q psy5653 430 EMQEVETNLQEVVFDHLHATA-FQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGV 496 (740)
Q Consensus 430 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~ 496 (740)
.+.....++...+.......+ ++. +.. .....+.|.++|.++++++.++++.+.+.+++++|+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~ 428 (443)
T 1hr6_B 364 ALLLSLDGSTAIVEDIGRQVVTTGK-RLS--PEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNT 428 (443)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHSS-CCC--HHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECG
T ss_pred HHHHccCCHHHHHHHHHHHHHhcCC-cCC--HHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCc
Confidence 998777778777665555543 442 222 2224567899999999999999999999999999974
No 28
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.87 E-value=3.5e-21 Score=206.14 Aligned_cols=343 Identities=12% Similarity=0.057 Sum_probs=235.3
Q ss_pred CCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhccccc----CCCc--------------
Q psy5653 20 PSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVM----GRGQ-------------- 80 (740)
Q Consensus 20 ~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~----~~~~-------------- 80 (740)
+.++.++|+||++|+ .+++..|++.+++++++|+++||++..|+|||+|||+|+||+ +++.
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 568999999999999 778888999999999999999999999999999999999999 7531
Q ss_pred --------------cCCCCc--chhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCC
Q psy5653 81 --------------IKPEYG--PLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQ 131 (740)
Q Consensus 81 --------------~~~~~~--~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~ 131 (740)
.+.+.. ...+.++.+.+ +|.|++++++++++ .+.+|++. +...+++.++
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~--~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p 159 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERA--RAIAGLREAQTQPGSILGRRFTELAYGKHP 159 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHH--HHHHHHHHHTTSHHHHHHHHHHHHHHTTSG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHhcCCCCC
Confidence 122333 55666777877 89999999999999 88888665 3455666677
Q ss_pred CCccccccHHHHHHhhHhhhhHHHhhhhccch------------HHHHHHHHHhccCCCCCcccccccccccCCC--CCC
Q psy5653 132 NGRNIVLSNREIRLLRYLELTEEEKEKVKASY------------KVARKLEKLEGRNREGEEGEMLSLDSVISGR--STP 197 (740)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 197 (740)
++++. +..++..++..++..++..++.+.. .+.+.+.+.|+.|+.+............... ...
T Consensus 160 ~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (424)
T 3amj_B 160 YGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIA 237 (424)
T ss_dssp GGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEE
T ss_pred CCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEee
Confidence 77766 6788999999999999999887532 2566668889888754322110000000000 001
Q ss_pred CCCCCccCcccCCCCCCCchhh--HHHHHHHhccc----hhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceee
Q psy5653 198 SDSGSCSGDIISPTEPLSLTDS--MLLMDDILSDS----RLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYM 271 (740)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~s----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (740)
.+..+..+.++.+..++.++++ +.+++.+||+. ||++.+|++.+.+|...+.
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~---------------------- 295 (424)
T 3amj_B 238 NPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSY---------------------- 295 (424)
T ss_dssp CSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEE----------------------
T ss_pred CCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeee----------------------
Confidence 1224445555555555666666 56677787763 4444443333211110000
Q ss_pred eecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchh
Q psy5653 272 HIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLH 351 (740)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~ 351 (740)
T Consensus 296 -------------------------------------------------------------------------------- 295 (424)
T 3amj_B 296 -------------------------------------------------------------------------------- 295 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Q psy5653 352 ELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQ---NSKLGQAEIERERGVIL 428 (740)
Q Consensus 352 ~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~---~~~~~~~~~~~~k~~~~ 428 (740)
+........+.+.+.+.+++.+.+++.+.+.+. +-.++++++++.|..++
T Consensus 296 ---------------------------~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~ 348 (424)
T 3amj_B 296 ---------------------------FSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLI 348 (424)
T ss_dssp ---------------------------ECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ---------------------------eccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 000001123455566667788888877776665 34699999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCC
Q psy5653 429 REMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497 (740)
Q Consensus 429 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~ 497 (740)
..+.....++...+.......+++ .++.. .....+.|+++|.++++++.++++.+.+++++++|+-.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~ 415 (424)
T 3amj_B 349 NGFALRLDSNAKILGQVAVIGYYG-LPLDY-LDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKA 415 (424)
T ss_dssp HTSGGGGSSHHHHHHHHHHHHHTT-CCTTT-TTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-
T ss_pred hhhhHhcCCHHHHHHHHHHHHHcC-CChhH-HHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChh
Confidence 888766678887777666555543 23221 22346789999999999999999999999999999753
No 29
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.87 E-value=9.2e-22 Score=211.39 Aligned_cols=348 Identities=14% Similarity=0.077 Sum_probs=241.1
Q ss_pred CCCCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCc--------------
Q psy5653 16 SVNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQ-------------- 80 (740)
Q Consensus 16 ~~~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~-------------- 80 (740)
+...+.++.++|+||++|+ ..++..|++.+++++++|+++| ++..|+|||+|||+|+||++++.
T Consensus 8 ~~~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~ 86 (434)
T 3gwb_A 8 SHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADF 86 (434)
T ss_dssp ----CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEE
T ss_pred cccCCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEE
Confidence 3456889999999999999 7778889999999999999999 89999999999999999987531
Q ss_pred --------------cCCCC--cchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCC
Q psy5653 81 --------------IKPEY--GPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQ 131 (740)
Q Consensus 81 --------------~~~~~--~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~ 131 (740)
.+.+. ....+.++.+.+ +|.|++++++++++ .+.+|++. +...+++.++
T Consensus 87 ~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~--~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~ 164 (434)
T 3gwb_A 87 GNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKN--QMLAGFEYQKQNPGKLASLELMKRLYGTHP 164 (434)
T ss_dssp EEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHTTST
T ss_pred EeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHhcCCCC
Confidence 01123 455566677766 89999999999999 88888654 4566777789
Q ss_pred CCccccccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccCC--CCCC
Q psy5653 132 NGRNIVLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVISG--RSTP 197 (740)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 197 (740)
++++..++..++..++..++..++...+.+... +.+.+.+.|+.|+.++............. ....
T Consensus 165 ~~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T 3gwb_A 165 YAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIE 244 (434)
T ss_dssp TSSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEE
T ss_pred CCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEe
Confidence 999988888889888899999999988875322 46666888888875432211110000000 0011
Q ss_pred CCCCCccCcccCCCCCCCchhh--HHHHHHHhcc----chhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceee
Q psy5653 198 SDSGSCSGDIISPTEPLSLTDS--MLLMDDILSD----SRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYM 271 (740)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~~----s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 271 (740)
.+..+..+.++....++.++++ +.+++.+||+ ++|++.+|++.+.+|...+...
T Consensus 245 ~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~-------------------- 304 (434)
T 3gwb_A 245 FPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFT-------------------- 304 (434)
T ss_dssp CCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEEC--------------------
T ss_pred CCCCceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecc--------------------
Confidence 1234556666666677788887 5678888875 3666666555432222111000
Q ss_pred eecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchh
Q psy5653 272 HIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLH 351 (740)
Q Consensus 272 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~ 351 (740)
T Consensus 305 -------------------------------------------------------------------------------- 304 (434)
T 3gwb_A 305 -------------------------------------------------------------------------------- 304 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Q psy5653 352 ELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQN---SKLGQAEIERERGVIL 428 (740)
Q Consensus 352 ~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~~~~~~~~~k~~~~ 428 (740)
.......+.+.+.+.+++.+.+++.+.+.+.+ -.++++++++.|..++
T Consensus 305 -----------------------------~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~ 355 (434)
T 3gwb_A 305 -----------------------------PMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELA 355 (434)
T ss_dssp -----------------------------CBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred -----------------------------cCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 00011133445555666777777777666544 4689999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCC
Q psy5653 429 REMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497 (740)
Q Consensus 429 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~ 497 (740)
..+.....++...+........++. ++. ......+.|+++|.++++++.++++.+.++.++++|+..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~ 422 (434)
T 3gwb_A 356 GSFPLSTASNADIVGQLGAMGFYNL-PLS-YLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTV 422 (434)
T ss_dssp HC---CCCCHHHHHHHHHHHHHTTC-CTT-HHHHHHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHcCC-Ccc-HHHHHHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCcc
Confidence 9998777888888877766655542 211 112235779999999999999999999999999999643
No 30
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.87 E-value=5.1e-21 Score=180.85 Aligned_cols=173 Identities=17% Similarity=0.108 Sum_probs=155.0
Q ss_pred CCCceeEEEEeecCCCCCCChHHHHHHHHhhcCCCCCCCCCCCcccHHHHHHHhcCCeEEEEeecccCCCCceEEEEEEe
Q psy5653 541 AMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVA 620 (740)
Q Consensus 541 ~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~~~l~~~lR~~gl~Y~v~~~~~~~~~~~~~~~~~~~ 620 (740)
...++++.++|++++.++++..++.|++.+|| ||+ +++||+.||++|++|+++++.....+.|.|.+++.+
T Consensus 21 ~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg-------gg~--sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~ 91 (197)
T 3ih6_A 21 AGGTPLVAAMYHLPAAGSPDFVGLDLAATILA-------DTP--SSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQL 91 (197)
T ss_dssp -CCSCEEEEEEECCCTTSTTHHHHHHHHHHHH-------SST--TSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEEC
T ss_pred CCCCceEEEEEecCCCCCCcHHHHHHHHHHHc-------CCC--CchHHHHHHhcCceEEEEeccccccCCeEEEEEEEE
Confidence 35789999999999999999999999999998 344 899999999999999999988777788999999999
Q ss_pred CCC-CHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHhCCCCChHHHHHHHcccCH
Q psy5653 621 DRM-QLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTA 698 (740)
Q Consensus 621 ~~~-~~~~~~~~~~~~~~~l~~-~~s~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~ 698 (740)
+|+ +++++++.+.++++++.+ +++++||+++|+.++..+....+++..++..++..+.. +.+....++.+.|.+||+
T Consensus 92 ~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~-g~~~~~~~~~~~i~~vT~ 170 (197)
T 3ih6_A 92 QPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIAS-GDWRLFFLQRDRVREAKL 170 (197)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHT-TCTTHHHHHHHHHHTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCH
Confidence 988 699999999999999975 89999999999999999999999999999999876654 555567889999999999
Q ss_pred HHHHHHHHHhccCCCcEEEEEcCCC
Q psy5653 699 KDIHEVCTKYIWDRCPVVAAVGPTE 723 (740)
Q Consensus 699 edv~~~~~~~l~~~~~~~~v~g~~~ 723 (740)
+||++++++||.+++..+++++|..
T Consensus 171 ~dv~~~a~~~l~~~~~~~~~~~P~~ 195 (197)
T 3ih6_A 171 DDVQRAAVAYLVRSNRTEGRYIPTE 195 (197)
T ss_dssp HHHHHHHHHHSSGGGCEEEEECC--
T ss_pred HHHHHHHHHhCCccCeEEEEEeCCC
Confidence 9999999999998889999999964
No 31
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.87 E-value=7e-21 Score=204.82 Aligned_cols=341 Identities=15% Similarity=0.187 Sum_probs=234.9
Q ss_pred CCCCCcEEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc--------------
Q psy5653 17 VNVPSTQVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI-------------- 81 (740)
Q Consensus 17 ~~~~~~~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~-------------- 81 (740)
.+.+.++.++|+||++|+ ..+ ..|.+.+++++++||++|+++..|+|||+|||+|+||++++..
T Consensus 19 ~~~~~~~~~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~n 97 (439)
T 1pp9_B 19 PHPQDLEFTRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLS 97 (439)
T ss_dssp C-CCCCEEEECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEE
T ss_pred ccCCCceEEECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEE
Confidence 678899999999999999 555 8899999999999999999999999999999999999986420
Q ss_pred --------------CCCCcchhhhhhhhhh-hcccChhHHHHhhhhHHHHHHHHH------------HHHHHhhcCCCCc
Q psy5653 82 --------------KPEYGPLLVELSEEQV-YMHIKPNEVRQRKKQRKIDNEVAD------------LKLKLAACTQNGR 134 (740)
Q Consensus 82 --------------~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~~------------~~~~~~~~~~~~~ 134 (740)
+.+.....+.++.+.+ +|.|++++++++++ .+.+|+.. +...+++ +++++
T Consensus 98 a~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~--~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~ 174 (439)
T 1pp9_B 98 VTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQP--QLRIDKAVALQNPQAHVIENLHAAAYR-NALAN 174 (439)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHH--HHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGS
T ss_pred EEecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCC
Confidence 2234445555577766 79999999999999 88888654 3445666 78888
Q ss_pred cccccHHHHHHhhHhhhhHHHhhhhccch-----------HHHHHHHHHhccCCCCCcccccccccccCCC--CCCCCCC
Q psy5653 135 NIVLSNREIRLLRYLELTEEEKEKVKASY-----------KVARKLEKLEGRNREGEEGEMLSLDSVISGR--STPSDSG 201 (740)
Q Consensus 135 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 201 (740)
+..++..++..++..++..++..++.+.. .+.+.+.++++ |+.+..... ....+... ....+..
T Consensus 175 ~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~ 251 (439)
T 1pp9_B 175 SLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSG--AKAKYHGGEIREQNGDS 251 (439)
T ss_dssp CSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCC--CCCCBCCEEEEEECCCS
T ss_pred CccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCC--CCCCCcCCeEEecCCcc
Confidence 88888888888888899999998887632 24555677777 764332110 00000000 0111234
Q ss_pred CccCcccCCCCCCCchhh--HHHHHHHhcc-----------chhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccc
Q psy5653 202 SCSGDIISPTEPLSLTDS--MLLMDDILSD-----------SRLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQ 268 (740)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~--~~~~~~il~~-----------s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 268 (740)
+..+.++.+..++.++++ +.+++.+||+ ++|++.+|++.+.+|...
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~--------------------- 310 (439)
T 1pp9_B 252 LVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVS--------------------- 310 (439)
T ss_dssp EEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEE---------------------
T ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEE---------------------
Confidence 455566666667777777 5678888876 334443333322111100
Q ss_pred eeeeecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCcc
Q psy5653 269 VYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRV 348 (740)
Q Consensus 269 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~ 348 (740)
T Consensus 311 -------------------------------------------------------------------------------- 310 (439)
T 1pp9_B 311 -------------------------------------------------------------------------------- 310 (439)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhc---CCCCHHHHHHHHH
Q psy5653 349 PLHELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQN---SKLGQAEIERERG 425 (740)
Q Consensus 349 ~~~~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~~~~~~~~~k~ 425 (740)
+.+........+.+.+.+.+++++.+++.+.+.+.. -.++++++++.|.
T Consensus 311 ----------------------------~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~ 362 (439)
T 1pp9_B 311 ----------------------------AFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKN 362 (439)
T ss_dssp ----------------------------EEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred ----------------------------EeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 000000111233455556667888888777766654 5699999999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCC
Q psy5653 426 VILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGV 496 (740)
Q Consensus 426 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~ 496 (740)
.++..+.....++...+.......++.+.+. ......+.|+++|.++++++.++++. .+..++++|+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~ 430 (439)
T 1pp9_B 363 KLKAGYLMSVESSEGFLDEVGSQALAAGSYT--PPSTVLQQIDAVADADVINAAKKFVS-GRKSMAASGNL 430 (439)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHTCCHHHHHHHHHHHHH-SCEEEEEEECG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEECCc
Confidence 9999998777888887776666555533222 12234567999999999999999998 89999999974
No 32
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.84 E-value=1.8e-20 Score=202.97 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=115.2
Q ss_pred cCCCCCCcEEEEccCCCEEE-EecC--CCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc----------
Q psy5653 15 KSVNVPSTQVTSIDNGLRVA-TEDS--GAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI---------- 81 (740)
Q Consensus 15 ~~~~~~~~~~~~l~nGl~v~-~~~~--~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~---------- 81 (740)
+...+|.+++++|+|||+|+ +..+ ..|+++++++|++||++||+++.|+|||+|||+|+||++++..
T Consensus 19 ~l~~dp~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~ 98 (492)
T 3go9_A 19 ALQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGI 98 (492)
T ss_dssp CCCBCTTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCS
T ss_pred CCCCCCCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 45567889999999999998 6554 3568999999999999999999999999999999999987421
Q ss_pred CCCCcchh-------------------------hhhhhhhh-hcccChhHHHHhhhhHHHHHHHH--------HHH-HHH
Q psy5653 82 KPEYGPLL-------------------------VELSEEQV-YMHIKPNEVRQRKKQRKIDNEVA--------DLK-LKL 126 (740)
Q Consensus 82 ~~~~~~~~-------------------------~~~~~~~~-~~~f~~~~~~~~~~~~~i~~e~~--------~~~-~~~ 126 (740)
..-|+..| +.++.+.+ +|.|+++++++++. .+.+++. ..+ ..+
T Consensus 99 ~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~--~~~~~~~~~~~~~~~~~~~~~~ 176 (492)
T 3go9_A 99 DNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALN--TATDPIATFPQNIQEPWWRYRL 176 (492)
T ss_dssp CSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHT--CSSCCEEESSSCTTCHHHHHHT
T ss_pred HhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhcccchhhHHHHHHh
Confidence 11233333 44455555 67888888888876 3333321 122 334
Q ss_pred hhcCCCCccccccHHHHHHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCC
Q psy5653 127 AACTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGE 180 (740)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 180 (740)
++.+.++++..+ ..+..++..++..++..+|++... +.+.+++.|+.|+.+.
T Consensus 177 ~~~~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~ 240 (492)
T 3go9_A 177 KGSSLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKR 240 (492)
T ss_dssp TTSTTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCC
T ss_pred ccCCcccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCC
Confidence 444455555432 235677788899999999886433 5677788999998543
No 33
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.83 E-value=3e-19 Score=191.58 Aligned_cols=339 Identities=14% Similarity=0.135 Sum_probs=229.2
Q ss_pred EEEEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCC---------------------c
Q psy5653 23 QVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRG---------------------Q 80 (740)
Q Consensus 23 ~~~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~---------------------~ 80 (740)
++++|+||++|+ ..++..|++.+++++++||++||++..|+|||+|||+|+||.++. .
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~~~~~~G~~~na~t~~~~t~~~~~ 81 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAAKEGLALSSNISRDFQSYIVS 81 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHHHHHHHTTCEEEEEECSSCEEEEEE
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCcccHHHcCCeeeeeecCCeEEEEEE
Confidence 568899999999 777788999999999999999999999999999999999976431 1
Q ss_pred cCCCCcchhhhhhhhhh-hcc---cChhHHHHhhhhHHHHHHHHH-------------HHHHHhhcCCCCccccccHHHH
Q psy5653 81 IKPEYGPLLVELSEEQV-YMH---IKPNEVRQRKKQRKIDNEVAD-------------LKLKLAACTQNGRNIVLSNREI 143 (740)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~~---f~~~~~~~~~~~~~i~~e~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 143 (740)
.+.+.....+.++.+.+ +|. |++++++++++ .+.+|+.. +...+++.++++++..++..++
T Consensus 82 ~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~--~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 159 (431)
T 3cx5_A 82 SLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKK--SVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESL 159 (431)
T ss_dssp ECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHH--HHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHH
T ss_pred echhhHHHHHHHHHHHHhCcccccCCHHHHHHHHH--HHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 23456666777788877 898 99999999988 77777554 2334556678888888899999
Q ss_pred HHhhHhhhhHHHhhhhccchH------------HHHHHHHHhccCCCCCcccccccccccCCC---CCCCCCCCccCccc
Q psy5653 144 RLLRYLELTEEEKEKVKASYK------------VARKLEKLEGRNREGEEGEMLSLDSVISGR---STPSDSGSCSGDII 208 (740)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 208 (740)
..++..++..++..++.+... +.+.+.+.++.++.++.+.. ......... -...+..+..+.++
T Consensus 160 ~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~ 238 (431)
T 3cx5_A 160 ENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVL-KKKAAFLGSEVRLRDDTLPKAWISLA 238 (431)
T ss_dssp HTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCC-CCCCCCCCEEEEEECTTSSSEEEEEE
T ss_pred hhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCC-CCCCcccCceEEEcCCCCCceEEEEE
Confidence 999999999999988875322 34444554556654332110 000000000 00112345555566
Q ss_pred CCCCCCCchhh--HHHHHHHhccc------------hhhhhhHHHHHHHHHhhcccccccCCccchhhhhhccceeeeec
Q psy5653 209 SPTEPLSLTDS--MLLMDDILSDS------------RLDQLDRIERIEAILTAENVAQIKPEYGPLLVELSEEQVYMHIK 274 (740)
Q Consensus 209 ~~~~~~~~~~~--~~~~~~il~~s------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (740)
.+..++.++++ +.+++.+||+. +|++.+|+ .+
T Consensus 239 ~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe-~g--------------------------------- 284 (431)
T 3cx5_A 239 VEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE-YQ--------------------------------- 284 (431)
T ss_dssp EECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHT-TT---------------------------------
T ss_pred eecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHh-cC---------------------------------
Confidence 66666777776 56788888762 22222221 00
Q ss_pred CchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccceecccCCccchhhHH
Q psy5653 275 PNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354 (740)
Q Consensus 275 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~~~~~~~~~~~~~l~ 354 (740)
+...+
T Consensus 285 --------------------------------------------l~y~v------------------------------- 289 (431)
T 3cx5_A 285 --------------------------------------------LCDNF------------------------------- 289 (431)
T ss_dssp --------------------------------------------CCSEE-------------------------------
T ss_pred --------------------------------------------ceeeE-------------------------------
Confidence 00000
Q ss_pred HhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecC-CChHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHH
Q psy5653 355 ARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLK-QDVPKAVEILADIIQNS--KLGQAEIERERGVILREM 431 (740)
Q Consensus 355 ~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~l~~~--~~~~~~~~~~k~~~~~~~ 431 (740)
++.+........+.+.+.+.+ ++++.+++.+.+.+... .++++++++.|..++..+
T Consensus 290 ---------------------~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~ 348 (431)
T 3cx5_A 290 ---------------------NHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQL 348 (431)
T ss_dssp ---------------------EEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ---------------------eEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000000011223455666666 78877777766654432 699999999999999999
Q ss_pred HH--hhCCHHHHHHHHHHHHh-cCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcCCC
Q psy5653 432 QE--VETNLQEVVFDHLHATA-FQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497 (740)
Q Consensus 432 ~~--~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~~~ 497 (740)
.. ...++...+.......+ ++. +.. .....+.|+++|.++++++.++++.+.+..++++|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~--~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 349 GQLYESGNPVNDANLLGAEVLIKGS-KLS--LGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHHSS-CCC--HHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HhhhccCCHHHHHHHHHHHHHhcCC-CCC--HHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 87 77888887776666544 443 221 22345678999999999999999999999999999754
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.72 E-value=1.6e-16 Score=169.93 Aligned_cols=329 Identities=10% Similarity=0.037 Sum_probs=217.8
Q ss_pred EEccCCCEEE-EecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCc---c---CC-C-Cc---------
Q psy5653 25 TSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQ---I---KP-E-YG--------- 86 (740)
Q Consensus 25 ~~l~nGl~v~-~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~---~---~~-~-~~--------- 86 (740)
++|+||++|+ ..++..|++.+.+.+++|+.+|+ .|+|||+|||+|+||++++. + .. . |+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 8899999999 77778899999999999998876 79999999999999998732 1 00 0 22
Q ss_pred ------------------------chhhhhhhhhh-hcc-----cChhHHHHhhhhHHHHHHHHH------------HHH
Q psy5653 87 ------------------------PLLVELSEEQV-YMH-----IKPNEVRQRKKQRKIDNEVAD------------LKL 124 (740)
Q Consensus 87 ------------------------~~~~~~~~~~~-~~~-----f~~~~~~~~~~~~~i~~e~~~------------~~~ 124 (740)
...+.++.+.+ +|. |++++++++++ .+.+|+.. +..
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~--~v~~e~~~~~~~p~~~~~~~~~~ 160 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKE--NLKAYLESIVEDKQTYASLALQS 160 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHH--HHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHH--HHHHHHHHHhhCHHHHHHHHHHH
Confidence 22334455655 799 99999999998 88888654 345
Q ss_pred HHh-hcCCCCccccccHHHHHHhhHhhhhHHHhhhhccch------------HHHHHHHHHhccCCCCCccccc-ccccc
Q psy5653 125 KLA-ACTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASY------------KVARKLEKLEGRNREGEEGEML-SLDSV 190 (740)
Q Consensus 125 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 190 (740)
.++ ..++++++..++..++..++..++..++..++.+.. .+.+.+ +.|+ |+.++..... ....+
T Consensus 161 ~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 238 (425)
T 3d3y_A 161 VYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQP 238 (425)
T ss_dssp HHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCC
T ss_pred HhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcccccccccccccc
Confidence 566 668888888899999999999999999988877422 245666 7788 7643321100 00000
Q ss_pred cCCCC----CCCCCCCccCcccCCC-CCCCchhh--HHHHHHHhcc---chhhhhhHHHHHHHHHhhcccccccCCccch
Q psy5653 191 ISGRS----TPSDSGSCSGDIISPT-EPLSLTDS--MLLMDDILSD---SRLDQLDRIERIEAILTAENVAQIKPEYGPL 260 (740)
Q Consensus 191 ~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~il~~---s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (740)
..... ...+..+..+.++.+. .++.++++ +.+++.+||+ ++|++.+|++++.+|...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~---------- 308 (425)
T 3d3y_A 239 IRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSI---------- 308 (425)
T ss_dssp CCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEE----------
T ss_pred CCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccc----------
Confidence 00000 0112345555555554 35777777 5779999985 566666655443221111000
Q ss_pred hhhhhccceeeeecCchhHHhhhhcccChhHHHHHHHHHHHhhhccCChhHHHHHhhhccceEEEeccCCCCceecccce
Q psy5653 261 LVELSEEQVYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQ 340 (740)
Q Consensus 261 ~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~k~~l~~~~~~~~d~~~~~~~~ig~~ 340 (740)
T Consensus 309 -------------------------------------------------------------------------------- 308 (425)
T 3d3y_A 309 -------------------------------------------------------------------------------- 308 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccCCccchhhHHHhhccCCCCChhHHHHHHHHhcCeeeEEecceEEEEEEEecCCChHHHHHHHHHHHhc---CCCCH
Q psy5653 341 ILCYGRRVPLHELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQN---SKLGQ 417 (740)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~gt~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---~~~~~ 417 (740)
......+.+.+.+.+++++.+++.+.+.+.. -.+++
T Consensus 309 -----------------------------------------~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 347 (425)
T 3d3y_A 309 -----------------------------------------DTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRE 347 (425)
T ss_dssp -----------------------------------------ETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCH
T ss_pred -----------------------------------------cccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCH
Confidence 0000122344445567777777777665544 46999
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcC
Q psy5653 418 AEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGG 495 (740)
Q Consensus 418 ~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~ 495 (740)
+++++.|..++..+.....++...+.......++.+.+. ......+.|+++|.++++++.++++ +.+. ++|.|+
T Consensus 348 ~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~edv~~~a~~~~-~~~~-~~v~g~ 421 (425)
T 3d3y_A 348 LEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPEIQEVAKRLE-LQAI-FFLEGE 421 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHHHHHHHHHCE-EEEE-EEEEEE
T ss_pred HHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHHHHHHHHhcc-CceE-EEEeCC
Confidence 999999999999998777888888877766666622222 1223456789999999999999975 4444 455554
No 35
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.46 E-value=3.5e-14 Score=147.35 Aligned_cols=188 Identities=18% Similarity=0.223 Sum_probs=128.3
Q ss_pred CEEEEecCCCCeEEEEEEEeccccCCCCCCCCHHHHHHHhhcccccCCCcc----------------------------C
Q psy5653 31 LRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQI----------------------------K 82 (740)
Q Consensus 31 l~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~~eh~~f~gt~~~~~~----------------------------~ 82 (740)
|+|+++++..|.+++++++++||++|+ ..|+|||+|||+|+||++++.. +
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e~--~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGCS--STTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCCC--cccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 688888999999999999999999974 8999999999999999987421 2
Q ss_pred CCCcchhhhhhhhhh-hcccChhHHH-HhhhhHHHHHHHHH------------HHHHHhhcCCCCccccccHHHHHHhhH
Q psy5653 83 PEYGPLLVELSEEQV-YMHIKPNEVR-QRKKQRKIDNEVAD------------LKLKLAACTQNGRNIVLSNREIRLLRY 148 (740)
Q Consensus 83 ~~~~~~~~~~~~~~~-~~~f~~~~~~-~~~~~~~i~~e~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (740)
.+.....+.++.+.+ +|.|++++++ ++++ .+.+|++. +...+++ ++++++.. ..++..++.
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~--~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it~ 153 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLP--AARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSL 153 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCCH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCCH
Confidence 234555566677776 8999999998 8888 88888655 3455665 78887764 456777888
Q ss_pred hhhhHHHhhhhccchH-----------HHHHH-HHHhccCCCCCcccccccccccCCCC--CCCCCCCccCcccCCCCCC
Q psy5653 149 LELTEEEKEKVKASYK-----------VARKL-EKLEGRNREGEEGEMLSLDSVISGRS--TPSDSGSCSGDIISPTEPL 214 (740)
Q Consensus 149 ~~l~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 214 (740)
.++..++..++.+... +.+.+ ++.|+.|+.+...........+.... .+. ..+..+.+ +.++
T Consensus 154 ~~l~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~ 229 (352)
T 3cx5_B 154 QDIKDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-IGDSVAAI---GIPV 229 (352)
T ss_dssp HHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-SSSEEEEE---EEEE
T ss_pred HHHHHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-CCCceEEE---ecCC
Confidence 8899999998886332 45666 67788887433211100000000000 011 12222222 3455
Q ss_pred Cchhh--HHHHHHHhcc
Q psy5653 215 SLTDS--MLLMDDILSD 229 (740)
Q Consensus 215 ~~~~~--~~~~~~il~~ 229 (740)
.++++ +.+++.+||+
T Consensus 230 ~~~~~~~l~vl~~iLg~ 246 (352)
T 3cx5_B 230 NKASLAQYEVLANYLTS 246 (352)
T ss_dssp CTTTHHHHHHHHHHHHS
T ss_pred CChhHHHHHHHHHHhCc
Confidence 67777 6779999988
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=97.69 E-value=0.00036 Score=64.68 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=93.9
Q ss_pred HHHHHHHhcCeeeEEec------ceEEEEEEEecCC-ChHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHHhhCC
Q psy5653 368 LELEVENIGAHLNAYTS------REQTVFYAKCLKQ-DVPKAVEILADIIQN---SKLGQAEIERERGVILREMQEVETN 437 (740)
Q Consensus 368 l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~-~l~~~l~~l~~~l~~---~~~~~~~~~~~k~~~~~~~~~~~~~ 437 (740)
|...+...|+.+++++. ...+.+.+.+.++ +++.+++.+.+.+.+ -.++++++++.|..++..+.....+
T Consensus 59 L~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~ 138 (197)
T 3ih6_A 59 LYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYAD 138 (197)
T ss_dssp HHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 44444444655444432 2356677777777 599999988887765 3699999999999999999887888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcC
Q psy5653 438 LQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGG 495 (740)
Q Consensus 438 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~ 495 (740)
+..++.......++++ + .......+.|+++|.+|++++.++|+.+.+.++++.|.
T Consensus 139 ~~~~a~~l~~~~~~g~-~--~~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P 193 (197)
T 3ih6_A 139 PEKVGVALSEAIASGD-W--RLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIP 193 (197)
T ss_dssp HHHHHHHHHHHHHTTC-T--THHHHHHHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC
T ss_pred HHHHHHHHHHHHHcCC-H--HHHHHHHHHHHhCCHHHHHHHHHHhCCccCeEEEEEeC
Confidence 9888887777766642 1 11223457899999999999999999999999999884
No 37
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=23.83 E-value=91 Score=22.65 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=36.9
Q ss_pred CCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcC
Q psy5653 453 GTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGG 495 (740)
Q Consensus 453 ~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~ 495 (740)
++++-+...+....|+...+++...-..+.|....+++.|.||
T Consensus 33 ~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~n 75 (85)
T 3ov5_A 33 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSAN 75 (85)
T ss_dssp CSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEETT
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECC
Confidence 4556677777888899999999888889999999999999998
No 38
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=23.59 E-value=30 Score=25.98 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHcccCHHHHHHHHHHhccCCCcEEEEEcCCCCCCCHHHHHHHH
Q psy5653 691 ARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQLPDYTWLRQSM 735 (740)
Q Consensus 691 ~~i~~vT~edv~~~~~~~l~~~~~~~~v~g~~~~i~~~~~~~~~~ 735 (740)
..+.-+|.+++..+..+.-.|++-++.++-..+..|.++++++..
T Consensus 48 sr~~~it~e~f~~icr~~srPEReRLIl~~K~~p~psfEdlrrSw 92 (110)
T 1k8r_B 48 SRIKLITEEEFKQICFNSSSPERDRLIIVPKEKPCPSFEDLRRSW 92 (110)
T ss_dssp SSEEECCCC-------------CCCEEEEESSSCCCCHHHHHHTT
T ss_pred ceEEEecHhHHHHHHhCCCCcchheeEEecCCCCCCCHHHHHHHH
Confidence 457789999999999988888888888888888999999998753
No 39
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=20.50 E-value=1.1e+02 Score=23.63 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=37.6
Q ss_pred CCCCCCCCCCChhhhccCCHHHHHHHHHhhccCCceEEEEEcC
Q psy5653 453 GTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGG 495 (740)
Q Consensus 453 ~~~~~~~~~~~~~~l~~it~e~l~~~~~~~~~~~~~~~~i~G~ 495 (740)
++++-+...+..+.|+...+++...-..+.|....+++.|.|+
T Consensus 63 ~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~~ 105 (120)
T 2l4w_A 63 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSAN 105 (120)
T ss_dssp CCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECSS
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECC
Confidence 5666677888889999999999888889999999999999997
Done!