RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5653
(740 letters)
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
prediction only].
Length = 438
Score = 240 bits (614), Expect = 1e-71
Identities = 112/378 (29%), Positives = 187/378 (49%), Gaps = 18/378 (4%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT+ +L E +G LNA+TS + TV+Y L ++ KA+++LADI+ N +
Sbjct: 70 GTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEE 129
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
E+ERE+GVIL E++ + + ++ F+ L + PLG ILG ++I+++ R+DL D+
Sbjct: 130 EVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDF 189
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
+YQP MVL G VD + +V+L +++FG++ +PP VRV
Sbjct: 190 YQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAP--PPKIPPEPPLGPERVVRVN 247
Query: 539 DDAMP---LAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRL-AAITAE 594
D P A +AL G ++S D+ ++ + S SRL + +
Sbjct: 248 DPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFS--------SRLFQELREK 299
Query: 595 QGFAHSFQSFNTCYKDTGLWGVYFVADRMQLE---DMTFSVQHEWIRLCKT-VTPAEVER 650
+G A+S SF+ D+GL+ +Y E ++ + + K T E++
Sbjct: 300 RGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDA 359
Query: 651 AKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIW 710
AK LL L L LD + + E +G+ +L G + L EL RI+ VT +D++ V K +
Sbjct: 360 AKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLA 419
Query: 711 DRCPVVAAVGPTEQLPDY 728
+ +GP + L D
Sbjct: 420 PENLTIVVLGPEKALKDL 437
Score = 74.8 bits (184), Expect = 5e-14
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 6 RATQASVAEKSVNVPSTQVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVA 64
+P QV ++ NGLRV T + APT ++ +W+ AGSR E G+A
Sbjct: 1 LLGLLLQPAALPALPGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIA 60
Query: 65 HFLEHMAFK 73
HFLEHMAFK
Sbjct: 61 HFLEHMAFK 69
Score = 34.4 bits (79), Expect = 0.21
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 299 EWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARI 357
+ K T E++ AK LL L L LD + + E +G+ +L G + L EL RI
Sbjct: 343 ALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERI 402
Query: 358 DGTSK 362
+ +
Sbjct: 403 EAVTL 407
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16).
Length = 149
Score = 144 bits (366), Expect = 2e-40
Identities = 54/106 (50%), Positives = 72/106 (67%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT K DLE E+E +G LNAYTSRE TV+Y + L D+PKAV+ LAD N +
Sbjct: 44 GTKKYPSEDLEEELEKLGGSLNAYTSREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPS 103
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPT 464
E+ERER V+L E++ V+ Q V+ D+LHA A++GTPLG ++LGP
Sbjct: 104 EVERERLVVLYEVEAVDAEPQAVLLDNLHAAAYRGTPLGRSLLGPG 149
Score = 77.0 bits (190), Expect = 2e-16
Identities = 31/43 (72%), Positives = 35/43 (81%), Gaps = 1/43 (2%)
Query: 32 RVATEDSG-APTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
RVA+E A T+ VG+WIDAGSRYE D NNG+AHFLEHMAFK
Sbjct: 1 RVASEHDPPADTSAVGLWIDAGSRYEPDDNNGLAHFLEHMAFK 43
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
Peptidase M16 consists of two structurally related
domains. One is the active peptidase, whereas the other
is inactive. The two domains hold the substrate like a
clamp.
Length = 182
Score = 141 bits (357), Expect = 9e-39
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 13/191 (6%)
Query: 469 SLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVD-CAGVVPPAH 527
SL R+DL D+ Y P MVL G VD D L+ LA+++FG++ P
Sbjct: 1 SLTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKPREPPLEP 60
Query: 528 CRYTGSDVRVRDDAMPLAHVALAVEGCGW-ESADNIPLMVANTLIGAWDRSQGSGTNNAS 586
TG +V V D +P A +ALA G D+ L V L+G +S
Sbjct: 61 EELTGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLGGG---------ASS 111
Query: 587 RL-AAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VT 644
RL + ++G A+S +F Y DTGL+G+Y D L+++ + E +L + +T
Sbjct: 112 RLFQELREKEGLAYSVSAFFDSYSDTGLFGIYADLDPENLDEVIELIFEELKKLAEEGIT 171
Query: 645 PAEVERAKNLL 655
E+ERAK L
Sbjct: 172 EEELERAKAQL 182
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 53.5 bits (129), Expect = 3e-07
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 373 ENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQ 432
++ G+H NA T+ E+T FY + + A++ AD + ++RER +
Sbjct: 93 KHGGSH-NASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAV---NS 148
Query: 433 EVETNLQE--VVFDHLHA-TAFQGTPL-----GN-TILGPTQNIKSLQRQDLLDYVNAFY 483
E NL + A TA G PL GN L + +Q+L ++ Y
Sbjct: 149 EFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDKPGLVV--QQELKEFHEKHY 206
Query: 484 QPARMVLSGAGGVDHDTLVKLAKEHFGNVK 513
M L G D L KLA + FG++
Sbjct: 207 SANNMKLVIYGNQPLDELAKLAADLFGDIP 236
Score = 38.1 bits (89), Expect = 0.019
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 20 PSTQVTSIDNGLRV-ATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMG 77
+ + NGLR D A ++ + + GS + + G+AHFLEHM F MG
Sbjct: 22 RKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLF---MG 77
>gnl|CDD|233732 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
peptidase PqqF. In a subset of species that make
coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
peptidase is found in the PQQ biosynthesis region and is
thought to act as a protease on PqqA (TIGR02107), a
probable peptide precursor of the coenzyme. PQQ is
required for some glucose dehydrogenases and alcohol
dehydrogenases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 696
Score = 49.1 bits (117), Expect = 7e-06
Identities = 57/246 (23%), Positives = 90/246 (36%), Gaps = 28/246 (11%)
Query: 376 GAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREM---- 431
G +NA T T F+ + + + L D++ L + +RER V+ E
Sbjct: 71 GGQVNATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQ 130
Query: 432 QEVETNLQEVVFDHLHATA-FQGTPLGNT-ILGPTQNIKSLQRQDLLDYVNAFYQPARMV 489
+ +T + + D L A + G+ L + Q Q L D+ YQ M
Sbjct: 131 NDADTLREAALLDALQAGHPLRRFHAGSRDSLA--LPNTAFQ-QALRDFHRRHYQAGNMQ 187
Query: 490 LSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVAL 549
L G D L +LA FG +CA P R+ + + P +
Sbjct: 188 LWLQGPQSLDELEQLA-ARFGASLAAGGECAQAPPAPLLRFDRLTLAGGSE--PRLWLLF 244
Query: 550 AVEGCGWESADNIPLMVANTLIGAW--DRSQGSGTNNASRLAAITAEQGFAHSFQSFNTC 607
A+ G + DN+ TL+ + D + G L A E+G A S +
Sbjct: 245 ALAGLPATARDNV------TLLCEFLQDEAPGG-------LLAQLRERGLAESVAA-TWL 290
Query: 608 YKDTGL 613
Y+D G
Sbjct: 291 YQDAGQ 296
Score = 37.2 bits (86), Expect = 0.033
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 29 NGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAF 72
NGLRV A A + + AGS E A G+AHFLEH+ F
Sbjct: 7 NGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLF 51
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 35.8 bits (83), Expect = 0.086
Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 379 LNAYTSREQTVF-YAKCLKQDVPKAVEILADIIQNSKLGQAEIERE-------------- 423
LNA+T ++TV+ + ++D + + D + + L + +E
Sbjct: 92 LNAFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKY 151
Query: 424 RGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFY 483
+GV+ EM+ ++ + V+ + + F GT G G +NI L ++ + Y
Sbjct: 152 KGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHY 211
Query: 484 QPARMVLSGAGGVDHDTLVKLAKE----HFG--NVKPPNVDC 519
P+ + G + + L+ +E FG + P D
Sbjct: 212 HPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQ 253
>gnl|CDD|220268 pfam09496, CENP-O, Cenp-O kinetochore centromere component. This
eukaryotic protein is a component of the inner
kinetochore subcomplex of the centromere. It has been
shown to be involved in chromosome segregation via
regulation of the spindle in both yeast and human.
Length = 88
Score = 31.8 bits (73), Expect = 0.18
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 348 VPLHELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTV 389
+PL ELE S+ DL + HL AY R
Sbjct: 44 IPLEELEKEYLPGQINSKQDLRKFARELRRHLVAYHLRRDQF 85
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 33.5 bits (77), Expect = 0.36
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 104 NEVRQRKKQRKIDN--------EVADLKLKLAACTQNGRNIVLSNREIRLLRYLELT--- 152
EV++ K++R N E +LK K GR+I REI L + T
Sbjct: 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVL 128
Query: 153 --EEEKEKVKASYKVARKLEKLEGRNREGEE 181
EEE+E V+ ++ ++LE + E E+
Sbjct: 129 TPEEERELVQKIKELRKELEDAKKALEENEK 159
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 31.9 bits (73), Expect = 1.3
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 138 LSNREIR--LLRYLELTEEEKEKVKASYKVARKLEKLEGRNREGEEGEMLSLDSVISGRS 195
L N + L+YL++ E+EKE++ K+ ++ K + E + I +
Sbjct: 186 LDNPFVVENFLKYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGIILLA 245
Query: 196 TPSDSG 201
T S+SG
Sbjct: 246 TGSESG 251
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 30.7 bits (70), Expect = 2.2
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 14/84 (16%)
Query: 359 GTSKRSQTDLELEVE------NIGAHLNAYTSREQT-----VFYAKCLKQDVPKAVEILA 407
GT S +LE E+ + +++ V K L VPK E+++
Sbjct: 122 GTENYSYRELEEEILLHTGGISFSVSVSSNPDDTDKYEPSFVISGKALNSKVPKLFELIS 181
Query: 408 DIIQNSKLGQAEIERERGVILREM 431
+I+ + + ER + ++RE
Sbjct: 182 EILNETDF--DDEERLK-ELIRES 202
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
Length = 961
Score = 31.1 bits (71), Expect = 2.8
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 23 QVTSIDNGLRVA-TEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMG 77
Q +DNG+ V D A + + + GS + DA G+AH+LEHM ++MG
Sbjct: 45 QAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHM---VLMG 97
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 30.9 bits (70), Expect = 3.3
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 359 GTSKRSQTDLELEVE-NIGA------------HLNAYTSREQTVFY----AKCLKQDVPK 401
GT K S + + E N+G +L Y V Y AK LK V +
Sbjct: 712 GTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLT-YDDPYNGVGYLNVRAKVLKHKVNE 770
Query: 402 AVEILADIIQNSKLGQAEIERERGVILREMQEVETNLQE 440
V+I+ + ++++ ++ E ++ R++ ++T
Sbjct: 771 MVDIVLEALKDADFSNSKKGVE--ILKRKINGMKTVFSS 807
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 30.3 bits (69), Expect = 3.9
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 140 NREIRLLRYLELTEEEKEKVKASYKVARKLE-KLEGRNRE 178
N E RL + LEL ++E E +K K+ +K+E K+E RE
Sbjct: 186 NIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQRE 225
>gnl|CDD|235759 PRK06264, cbiC, precorrin-8X methylmutase; Validated.
Length = 210
Score = 29.7 bits (67), Expect = 4.7
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 86 GPLLVELS-------EEQVYMHIKPNEVRQRKKQRKIDNEVADLKLKLAACTQNGRNIVL 138
P++V+++ VY I EV + K+ +I VA ++LA +G +V+
Sbjct: 76 KPIIVDINMVKAGIRYNNVYCFISEPEVFELAKKEQITRAVA--SMRLAKELIDGGIVVI 133
Query: 139 SNREIRLLRYLELTEEEKEKVKA 161
N L + L +EE K K
Sbjct: 134 GNAPTALFEVIRLVKEEGIKPKL 156
>gnl|CDD|220132 pfam09174, Maf1, Maf1 regulator. Maf1 is a negative regulator of
RNA polymerase III. It targets the initiation factor
TFIIIB.
Length = 177
Score = 29.3 bits (66), Expect = 4.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 179 GEEGEMLSLDSVISGRSTPSDSGSCSGDIISPTEPLSLTDS 219
E L S+ S S + S S D +SP PLS S
Sbjct: 25 ESEVNNCDLSSLSSPESLSPLNLSDSNDNLSPFGPLSEKSS 65
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.9 bits (68), Expect = 5.2
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 108 QRKKQRKIDNEVA-DLKLKLAACTQNGRNIVL--------SNREI--RLLRYLELTEEE- 155
+ K++R+ + +A + KL + R VL N E+ RL +LELTEEE
Sbjct: 340 KTKEKRETRDSIAKKIAEKLHTSKRKVRREVLPFLSIIFKHNPELAARLAAFLELTEEEI 399
Query: 156 ---------KEKVKASYKVARKLEKLEGRNREGEE 181
+K+K + A K + E + ++ +
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKA 434
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 29.7 bits (67), Expect = 6.6
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 178 EGEEGEMLSLDSVISGRSTPSDSGSCSGDIISPTEPLSLTDSMLLMDDILS------DSR 231
S + + S +SP ++ + L DDIL DS
Sbjct: 563 SYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAAASLADDDILDAVLAARDSL 622
Query: 232 LDQLD 236
L LD
Sbjct: 623 LSDLD 627
>gnl|CDD|130826 TIGR01765, tspaseT_teng_N, transposase, putative, N-terminal
domain. This model represents the N-terminal region of
a family of putative transposases found in the largest
copy number in Thermoanaerobacter tengcongensis. The
three homologs in Bacillus anthracis are each split into
two ORFs and This model represents the upstream ORF
[Mobile and extrachromosomal element functions,
Transposon functions].
Length = 73
Score = 27.0 bits (60), Expect = 7.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 467 IKSLQRQDLLDYVNAFYQPARMVLSGA 493
K LQR L+Y A+ ++ GA
Sbjct: 44 KKELQRLYYLNYREDAPLQAQSLIQGA 70
>gnl|CDD|190265 pfam02269, TFIID-18kDa, Transcription initiation factor IID, 18kD
subunit. This family includes the Spt3 yeast
transcription factors and the 18kD subunit from human
transcription initiation factor IID (TFIID-18).
Determination of the crystal structure reveals an
atypical histone fold.
Length = 93
Score = 27.4 bits (61), Expect = 7.9
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 260 LLVELSEEQVY-MHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNL 318
LL +L Q+ + + + Q + RKI ED+ F ++ + P ++ R K+L
Sbjct: 27 LLEDLVRGQLIELLQQAMKTAQLRGSRKITLEDIKFLIRKD---------PKKLNRLKDL 77
Query: 319 LKSN 322
L N
Sbjct: 78 LSMN 81
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 29.1 bits (66), Expect = 9.9
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 25/85 (29%)
Query: 121 DLKLKLAACTQNGRNIVLSNREIRLLR-------YLE--------LTEEEKEKVKASYKV 165
+KLK+ A TQ G L + + LR Y+ L++E+KE
Sbjct: 291 RVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKE-------- 342
Query: 166 ARKLEKLEGRNREGEEGEMLSLDSV 190
LE+ EG E D +
Sbjct: 343 --LLEEFAKSLGEGPEQSPGFFDKL 365
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,446,717
Number of extensions: 3733193
Number of successful extensions: 3656
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3641
Number of HSP's successfully gapped: 44
Length of query: 740
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 636
Effective length of database: 6,324,786
Effective search space: 4022563896
Effective search space used: 4022563896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)