RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5653
(740 letters)
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 553 bits (1428), Expect = 0.0
Identities = 200/382 (52%), Positives = 274/382 (71%), Gaps = 1/382 (0%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R LE EVE++GAHLNAY++RE T +Y K L +D+PKAVE+LADI+QN L +
Sbjct: 66 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS 125
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+IE+ER VIL+E+QE +T++++VVF++LHATAFQGTPL ++ GP++N++ L R DL +Y
Sbjct: 126 QIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 185
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
++ Y+ RMVL+ AGG++H L+ LA++HF + D V + CR+TGS + R
Sbjct: 186 LSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL-SGTYDEDAVPTLSPCRFTGSQICHR 244
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFA 598
+D +PLAHVA+AVEG GW DN+ L VAN +IG +D + G G + +S LA+I A
Sbjct: 245 EDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLC 304
Query: 599 HSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSN 658
SFQ+FN CY DTGL G +FV D M ++DM F +Q +W+RLC + T +EV R KNLL++
Sbjct: 305 QSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNA 364
Query: 659 LFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAA 718
L LDGTTPVCEDIGR +L YGRR+PL E E+RI +V A+ + EVC+KY +D+CP VA
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 424
Query: 719 VGPTEQLPDYTWLRQSMYWIRF 740
GP EQLPDY +R M+W+RF
Sbjct: 425 FGPIEQLPDYNRIRSGMFWLRF 446
Score = 115 bits (290), Expect = 2e-27
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+WIDAGSRYE++ NNG +F+EH
Sbjct: 2 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 61
Query: 70 MAFK 73
+AFK
Sbjct: 62 LAFK 65
Score = 104 bits (262), Expect = 6e-24
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP 349
+DM F +Q +W+RLC + T +EV R KNLL++ L LDGTTPVCEDIGR +L YGRR+P
Sbjct: 332 DDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP 391
Query: 350 LHELEARID 358
L E E+RI
Sbjct: 392 LAEWESRIA 400
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 525 bits (1354), Expect = 0.0
Identities = 159/382 (41%), Positives = 238/382 (62%), Gaps = 5/382 (1%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R Q +ELE+ENIG+HLNAYTSRE TV+YAK L++D+PKAV+IL+DI+ S L +
Sbjct: 60 GTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNS 119
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
IERER VI+RE +EV+ EVVFDHLH ++ PLG TILGP +NIKS+ R DL DY
Sbjct: 120 AIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDY 179
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVP-PAHCRYTGSDVRV 537
+ Y+ RMVL+GAG VDH+ LV+ A+++FG+V P + + +
Sbjct: 180 ITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFI 239
Query: 538 RDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLA-AITAEQG 596
+++ +P H+A+A+EG W + D + ++G WDR+ G+GTN+ S LA A +
Sbjct: 240 KENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGS 299
Query: 597 FAHSFQSFNTCYKDTGLWGVYFVAD--RMQLEDMTFSVQHEWIRLC-KTVTPAEVERAKN 653
A+S+ SF+T Y D+GLWG+Y V D + + + EW R+ ++ AEV RAK
Sbjct: 300 LANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKA 359
Query: 654 LLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRC 713
LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++D +T DI + ++
Sbjct: 360 QLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKP 419
Query: 714 PVVAAVGPTEQLPDYTWLRQSM 735
+ A+G T +P+ +++ + +
Sbjct: 420 VSMVALGNTSTVPNVSYIEEKL 441
Score = 101 bits (255), Expect = 4e-23
Identities = 31/59 (52%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 16 SVNVPSTQVTSIDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ +P T+ + + NGL +ATE +ATVGI++DAGSR E NNG AHFLEH+AFK
Sbjct: 1 ASQIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFK 59
Score = 98.8 bits (247), Expect = 4e-22
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 290 EDMTFSVQHEWIRLC-KTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRV 348
+ + EW R+ ++ AEV RAK LK+ L L LDG+T + EDIGRQ++ G+R+
Sbjct: 331 RLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRL 390
Query: 349 PLHELEARID 358
E+ ++D
Sbjct: 391 SPEEVFEQVD 400
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A*
2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Length = 431
Score = 519 bits (1338), Expect = e-179
Identities = 104/389 (26%), Positives = 177/389 (45%), Gaps = 18/389 (4%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK---L 415
+ G L++ SR+ + L K+++ L K L
Sbjct: 54 KENSAV-------AAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLL 106
Query: 416 GQAEIERERGVILREMQEVE-TNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQD 474
+ E + +L+++Q+ E + V +HLH+TAFQ TPL G +++++L D
Sbjct: 107 SSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVAD 166
Query: 475 LLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSD 534
L + N + + V+ G G + H+ LV + +++ V + GS+
Sbjct: 167 LESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTG----TKPVLKKKAAFLGSE 222
Query: 535 VRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAE 594
VR+RDD +P A ++LAVEG S + +A + G+++ + + +L E
Sbjct: 223 VRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQE 282
Query: 595 QGFAHSFQSFNTCYKDTGLWGVYFVADRM-QLEDMTFSVQHEWIRLCKTVTPAEVERAKN 653
+F F+ YKD+GLWG + ++D+ +W RL +VT EVERAK+
Sbjct: 283 YQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKS 342
Query: 654 LLKSNLFLQLDGTTPVC--EDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWD 711
LLK L + PV +G ++L G ++ L E +ID +T KD+ K +WD
Sbjct: 343 LLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWD 402
Query: 712 RCPVVAAVGPTEQLPDYTWLRQSMYWIRF 740
+ +A G E L DY +R M +R+
Sbjct: 403 QDIAIAGTGQIEGLLDYMRIRSDMSMMRW 431
Score = 103 bits (260), Expect = 1e-23
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 23 QVTSIDNGLRVATE-DSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+VT + NG+ VATE + A TA+VG+ +G+ E NNGV++ +++
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLS 53
Score = 99.2 bits (248), Expect = 3e-22
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 290 EDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVC--EDIGRQILCYGRR 347
+D+ +W RL +VT EVERAK+LLK L + PV +G ++L G +
Sbjct: 315 DDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSK 374
Query: 348 VPLHELEARID 358
+ L E +ID
Sbjct: 375 LSLGEAFKKID 385
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 488 bits (1258), Expect = e-167
Identities = 88/372 (23%), Positives = 160/372 (43%), Gaps = 13/372 (3%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
T S + +E +G L+ ++RE + +CL+ DV +E L ++ + +
Sbjct: 76 TTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRW 135
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
E+ + + + N Q V ++LHA A++ L N++ P I + +L DY
Sbjct: 136 EVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRN-ALANSLYCPDYRIGKVTPVELHDY 194
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
V + ARM L G GV H L ++A++ + A +Y G ++R +
Sbjct: 195 VQNHFTSARMALIGL-GVSHPVLKQVAEQFLNIRGGLG------LSGAKAKYHGGEIREQ 247
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLA-AITAEQGF 597
+ L H AL E SA+ V ++GA + G+N S L A+
Sbjct: 248 NG-DSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKR-GSNATSSLYQAVAKGVHQ 305
Query: 598 AHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK-TVTPAEVERAKNLLK 656
+FN Y D+GL+G Y ++ D+ + ++ + + ++ +V+ AKN LK
Sbjct: 306 PFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLK 365
Query: 657 SNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVV 716
+ + ++ + +++G Q L G P + +ID V D+ K++ R +
Sbjct: 366 AGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGR-KSM 424
Query: 717 AAVGPTEQLPDY 728
AA G P
Sbjct: 425 AASGNLGHTPFI 436
Score = 113 bits (285), Expect = 6e-27
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 1 ILKRCRATQASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDAN 60
+ + +AT+A + + T + NGL +A+ ++ AP + +G++I AGSRYE N
Sbjct: 4 VAPKVKATEAPAGVPP-HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNN 62
Query: 61 NGVAHFLEHMAFK 73
G +H L +
Sbjct: 63 LGTSHLLRLASSL 75
Score = 97.7 bits (244), Expect = 1e-21
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 290 EDMTFSVQHEWIRLCK-TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRV 348
D+ + ++ + + ++ +V+ AKN LK+ + ++ + +++G Q L G
Sbjct: 334 GDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT 393
Query: 349 PLHELEARID 358
P + +ID
Sbjct: 394 PPSTVLQQID 403
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 485 bits (1251), Expect = e-166
Identities = 95/400 (23%), Positives = 172/400 (43%), Gaps = 26/400 (6%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
T + +E +G + +SRE ++ A QDV K ++++++ ++ K+ +
Sbjct: 58 STEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQ 117
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
E++ ++ E+ EV + V+ + LH A+ G LG+ ++ P I S+ + LLDY
Sbjct: 118 ELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDY 177
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVR-- 536
N FY P V + GV H+ ++L ++ G+ + + + +YTG +
Sbjct: 178 RNKFYTPENTVAAFV-GVPHEKALELTGKYLGDWQSTHPP----ITKKVAQYTGGESCIP 232
Query: 537 ---VRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQ--GSGTNNASRLA-A 590
V + L H+ + EG + D L TL+G G G SRL
Sbjct: 233 PAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTH 292
Query: 591 ITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCK----TVTPA 646
+ + F + +FN Y D+G++G+ + + +T
Sbjct: 293 VLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTED 352
Query: 647 EVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCT 706
EV RAKN LKS+L + L+ ED+GRQ+L +GR++P++E+ ++I+D+ DI V
Sbjct: 353 EVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAE 412
Query: 707 KYIWDRC---------PVVAAVGPTEQLPDYTWLRQSMYW 737
V G D + ++
Sbjct: 413 MIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYGL 452
Score = 109 bits (274), Expect = 2e-25
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 20 PSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ +++S+ NGL+VAT ++ + +G++IDAGSR+E G H L+ +AFK
Sbjct: 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFK 57
Score = 97.7 bits (244), Expect = 1e-21
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 288 DNEDMTFSVQHEWIRLCK----TVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILC 343
+ + +T EV RAKN LKS+L + L+ ED+GRQ+L
Sbjct: 326 AAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLM 385
Query: 344 YGRRVPLHELEARID 358
+GR++P++E+ ++I+
Sbjct: 386 HGRKIPVNEMISKIE 400
>3hdi_A Processing protease; CAGE structure, M16B peptidase,
metallopeptidase, peptidasome, protease, hydrolase;
2.70A {Bacillus halodurans c-125}
Length = 421
Score = 470 bits (1211), Expect = e-160
Identities = 99/380 (26%), Positives = 179/380 (47%), Gaps = 18/380 (4%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT+ RS ++ ++IG +NA+TS+E T +YAK L +A++ L+D+ +S +
Sbjct: 55 GTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKE 114
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
E+E+ER V+ E++ V+ ++V D L + + LG ILG + + S L Y
Sbjct: 115 ELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHY 174
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
++ FY +V+S AG V HD L+ KE F VKP + + + + +
Sbjct: 175 MDRFYTGDYVVISVAGNV-HDELIDKIKETFSQVKPTTYN----YQGEKPMFLPNRIVRK 229
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLA-AITAEQGF 597
+ AH+ L G D L++ N ++ G + SRL I ++G
Sbjct: 230 KE-TEQAHLCLGYPGLPIGDKDVYALVLLNNVL-------GGSMS--SRLFQDIREKRGL 279
Query: 598 AHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKNLLK 656
+S S+++ ++D+G+ +Y QL+D+ +S+Q L + +T E+E K LK
Sbjct: 280 CYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLK 339
Query: 657 SNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVV 716
+L L L+ T G+ L + L E+ +I+ V +D+ + K + P +
Sbjct: 340 GSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLA-KILLSASPSI 398
Query: 717 AAVGPTEQLPDYTWLRQSMY 736
+ + +LP + +
Sbjct: 399 SLINANGELPKALIHLEHHH 418
Score = 99 bits (250), Expect = 2e-22
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 23 QVTSIDNGLRVATED-SGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
++DNG+R+ TE S + ++GIW+ GSRYE+ NG++HFLEHM FK
Sbjct: 3 NTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK 54
Score = 90.3 bits (225), Expect = 2e-19
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 290 EDMTFSVQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRV 348
+D+ +S+Q L + +T E+E K LK +L L L+ T G+ L +
Sbjct: 308 DDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHR 367
Query: 349 PLHELEARID 358
L E+ +I+
Sbjct: 368 SLDEMIEQIN 377
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 446 bits (1150), Expect = e-152
Identities = 86/366 (23%), Positives = 150/366 (40%), Gaps = 16/366 (4%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
G + + +GA NA+TS E TV+Y L + + + A ++ L +
Sbjct: 55 GPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREE 113
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+ + E+ VIL E+ + + ++ A FQG PLGN++LG ++I +L R+ + Y
Sbjct: 114 DFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAY 173
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVR 538
Y P MVL+ G VD D L+ A+ + P G + R
Sbjct: 174 HRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAE---RAYPPLTPAFGVEERPY 230
Query: 539 DDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFA 598
+ A ++ G ++ P V L+G + RL ++G A
Sbjct: 231 EKARA-LYLVALFPGVAYQEEARFPGQVLAHLLGEEG---------SGRLHFALVDKGLA 280
Query: 599 HSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKNLLKS 657
G + Y AD + ++ +Q E RL + V EVERAK L +
Sbjct: 281 EVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLAT 340
Query: 658 NLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVA 717
L + +G + L GR + L E++AR+ VT+++++ + + ++ +
Sbjct: 341 GLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEK-GLYY 399
Query: 718 AVGPTE 723
V P
Sbjct: 400 LVLPHG 405
Score = 100 bits (251), Expect = 1e-22
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 23 QVTSIDNGLRVATE-DSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ + NGLRV E GA + +G ++ G+R ET +GV+HFLEHM FK
Sbjct: 3 REAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFK 54
Score = 86.1 bits (214), Expect = 5e-18
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 290 EDMTFSVQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRV 348
++ +Q E RL + V EVERAK L + L + +G + L GR +
Sbjct: 308 GEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYL 367
Query: 349 PLHELEARID 358
L E++AR+
Sbjct: 368 SLEEVKARVQ 377
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III,
electron transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B*
1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Length = 352
Score = 309 bits (794), Expect = 2e-99
Identities = 64/372 (17%), Positives = 113/372 (30%), Gaps = 66/372 (17%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
T+ RS L E E +G + RE A LK D+P V LAD++ +
Sbjct: 42 NTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPH 101
Query: 419 EI-ERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLD 477
E+ E + E + D L+A F+ LGN +L ++ + QD+ D
Sbjct: 102 ELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLLYD--GVERVSLQDIKD 158
Query: 478 YVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRV 537
+ + Y + +SG V+ D + + + + V + G + RV
Sbjct: 159 FADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGK---SLVSKSEPKFFLGEENRV 215
Query: 538 RDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAEQGF 597
R +A + + V V + +A++ G
Sbjct: 216 RFIGDSVAAIGIPVNKASL-----AQYEVLANYLT----------------SALSELSGL 254
Query: 598 AHSFQSFNTCYKDTGLWGVYFVADRMQ-LEDMTFSVQHEWIRLCKTVTPAEVERAKNLLK 656
S + + D GL+ ++ + + + ++ A N K
Sbjct: 255 ISS--AKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADL------KKGKDLSPAINYTK 306
Query: 657 SNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVV 716
+Q + + E +A D K
Sbjct: 307 LKNAVQNESVSSPIELNF---------------DAVKDFKLGK--------------FNY 337
Query: 717 AAVGPTEQLPDY 728
AVG LP
Sbjct: 338 VAVGDVSNLPYL 349
Score = 88.5 bits (220), Expect = 4e-19
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 LRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
L V+ D+ +T+ + + GSRY T +GVAH L F+
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQ 41
Score = 40.4 bits (95), Expect = 0.002
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 307 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGR 339
++ A N K +Q + + E
Sbjct: 293 KKGKDLSPAINYTKLKNAVQNESVSSPIELNFD 325
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding,
hydrolase; 3.00A {Sphingomonas}
Length = 424
Score = 230 bits (588), Expect = 2e-68
Identities = 68/375 (18%), Positives = 136/375 (36%), Gaps = 18/375 (4%)
Query: 358 DGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQ--DVPKAVEILADIIQNSKL 415
G S + + + +IGA L ++ F + L + A+ IL DI+ +
Sbjct: 60 SGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTF 119
Query: 416 GQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDL 475
+ERER + ++E +T ++ A+ P G+ + ++ + R L
Sbjct: 120 PAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGH--VSSVATLQKISRDQL 177
Query: 476 LDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDV 535
+ + Y V++ G + +A++ ++ P + V
Sbjct: 178 VSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAM----PRATV 233
Query: 536 RVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRL-AAITAE 594
+ AH+A+ + D PL+V N +G G G SRL I +
Sbjct: 234 ERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALG------GGGFE--SRLMKEIRDK 285
Query: 595 QGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKN 653
+G ++ S+ + K GL+ + F + ++ + T AE++ AK+
Sbjct: 286 RGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKD 345
Query: 654 LLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRC 713
L + L+LD + + L R+ VT + + E +++
Sbjct: 346 NLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYTERVQAVTVEQVREAFARHVKREN 405
Query: 714 PVVAAVGPTEQLPDY 728
+ VG L +
Sbjct: 406 LITVVVGGKASLEHH 420
Score = 67.3 bits (165), Expect = 6e-12
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 23 QVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ + +G +V E+ P V + DAGS E GVA +
Sbjct: 5 EHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDA 56
Score = 39.6 bits (93), Expect = 0.003
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 296 VQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354
+ T AE++ AK+ L + L+LD + + L
Sbjct: 323 ANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDYLDHYT 382
Query: 355 ARID 358
R+
Sbjct: 383 ERVQ 386
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus
faecalis V583, STR genomics, PSI-2, protein structure
initiative; 1.95A {Enterococcus faecalis}
Length = 425
Score = 207 bits (530), Expect = 4e-60
Identities = 66/387 (17%), Positives = 119/387 (30%), Gaps = 38/387 (9%)
Query: 359 GTSKR-SQTDLELEVENI-GAHLNAYTSREQTV----FYAKCLK-------QDVPKAVEI 405
+ +Q L + + GA S++ + Q + +AV+
Sbjct: 53 NSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDF 112
Query: 406 LADIIQNSKLG-----QAEIERERGVILREMQEVETNLQEVVFDHLHATAF-QGTPLGNT 459
L +II + +RE+ + ++ + + Q L + F Q
Sbjct: 113 LKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIP 172
Query: 460 ILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDC 519
G + L Y ++ + G V+ LV L K+ +
Sbjct: 173 SFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGK-- 230
Query: 520 AGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVE-GCGWESADNIPLMVANTLIGAWDRSQ 578
A + R + R+ + + LA + + L V N + G
Sbjct: 231 AAIFYNQPIRNVIEERTEREVL-AQSKLNLAYNTDIYYGDSYYFALQVFNGIFG------ 283
Query: 579 GSGTNNASRL-AAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWI 637
G S+L + ++ A+ S G V D + + E
Sbjct: 284 GFPH---SKLFMNVREKEHLAYYASSSI--DTFRGFMTVQTGIDGKNRNQVLRLISTELE 338
Query: 638 RLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDV 696
+ + E+E+ K +LK+ L LD E L + E ARI+ V
Sbjct: 339 NIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAV 398
Query: 697 TAKDIHEVCTKYIWDRCPVVAAVGPTE 723
T +I EV + + G TE
Sbjct: 399 TIPEIQEVAKRLELQ--AIFFLEGETE 423
Score = 53.5 bits (129), Expect = 1e-07
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 25 TSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ G+ + T + + + +ET L +
Sbjct: 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMET 52
Score = 51.9 bits (125), Expect = 4e-07
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 296 VQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354
+ E + + E+E+ K +LK+ L LD E L + E
Sbjct: 333 ISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWI 392
Query: 355 ARIDGTSK 362
ARI+ +
Sbjct: 393 ARINAVTI 400
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family,
PFL_5859, structural genomics, PSI-2, structure
initiative; 1.90A {Pseudomonas fluorescens}
Length = 434
Score = 203 bits (518), Expect = 3e-58
Identities = 53/371 (14%), Positives = 120/371 (32%), Gaps = 16/371 (4%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQ--DVPKAVEILADIIQNSKLG 416
G + + + E +GA ++ V + L A+++ A+++
Sbjct: 66 GVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFP 125
Query: 417 QAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLL 476
+ R + +L + + N ++ L + P + G ++I + L
Sbjct: 126 ADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLK 185
Query: 477 DYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVR 536
+ Y +V++ G + +A + + P + +
Sbjct: 186 AFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAE----PKASIG 241
Query: 537 VRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAA-ITAEQ 595
+ + LA G + D + + N ++G G G +RL + + ++
Sbjct: 242 HIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILG------GGGFG--TRLMSEVREKR 293
Query: 596 GFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKNL 654
G + S T + G + + E VQ + K T E++ AK
Sbjct: 294 GLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRE 353
Query: 655 LKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCP 714
L + L + +G L + + ++T + + K++
Sbjct: 354 LAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKM 413
Query: 715 VVAAVGPTEQL 725
V+ + GPT
Sbjct: 414 VIVSAGPTVAQ 424
Score = 58.8 bits (143), Expect = 3e-09
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 16 SVNVPSTQVTSIDNGLRV-ATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
S + Q S G +V E P + + AGS + + GVA M +
Sbjct: 8 SHRNLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGN-APGVALLTNAMLNE 65
Score = 31.9 bits (73), Expect = 0.88
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 296 VQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354
VQ + K T E++ AK L + L + +G L +
Sbjct: 330 VQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFM 389
Query: 355 ARID 358
+
Sbjct: 390 RQSQ 393
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A
{Sphingomonas} PDB: 3amj_C
Length = 445
Score = 168 bits (428), Expect = 9e-46
Identities = 66/385 (17%), Positives = 138/385 (35%), Gaps = 16/385 (4%)
Query: 351 HELEARID-GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADI 409
H LE + GT + V +G NA+T+R+ T +Y + + + + AD
Sbjct: 51 HALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADR 110
Query: 410 IQNSKLGQAEIERERGVILREM-QEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIK 468
+ N + ++E VI E + + ++ L A ++ P ++G +I+
Sbjct: 111 MANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQ 170
Query: 469 SLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKP-PNVDCAGVVPPAH 527
++ QD+ D+ +Y P + G V+H+ + +LA++ +G + P
Sbjct: 171 NMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQ 230
Query: 528 CRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASR 587
G L ++ALA D A ++ + + +R
Sbjct: 231 ---AGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEIL-----AAVLDGYDGAR 282
Query: 588 LA-AITAEQGFAHSFQSFNTCY--KDTGLWGVY-FVADRMQLEDMTFSVQHEWIRLCKT- 642
+ + A S + GL+ + + + + + ++ + +
Sbjct: 283 MTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKG 342
Query: 643 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIH 702
VT AE+ R K+ + + + D IG + ++ VTA ++
Sbjct: 343 VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVK 402
Query: 703 EVCTKYIWDRCPVVAAVGPTEQLPD 727
+ + D VA + P P
Sbjct: 403 AAAARLLTDDTLTVANLVPLPPDPK 427
Score = 64.3 bits (157), Expect = 5e-11
Identities = 27/56 (48%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 19 VPSTQVTSIDNGLRV-ATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
ST T++ NGL+V ED APT +W GS ET GVAH LEHM FK
Sbjct: 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK 59
Score = 28.8 bits (65), Expect = 7.0
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 307 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARID 358
VT AE+ R K+ + + + D IG + ++
Sbjct: 343 VTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQQLR 394
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 133 bits (336), Expect = 3e-33
Identities = 48/384 (12%), Positives = 107/384 (27%), Gaps = 36/384 (9%)
Query: 368 LELEVENIGAHLNAYTSREQTVFY---AKCLKQDVPKAVEILADIIQNSKLGQAEIERER 424
+ ++N A TS + T++ + A+ L+D N + + +
Sbjct: 94 WQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAAL 153
Query: 425 GVILREMQEVETNLQEVVFD-HLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFY 483
+ N+QE + L ++ G G + + + + L + +Y
Sbjct: 154 NTATDPIATFPQNIQEPWWRYRLKGSSLIGHDPGQPV------TQPVDVEKLKQFYQQWY 207
Query: 484 QPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMP 543
P M L G VD ++ + F +K A V + ++
Sbjct: 208 TPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRT--APAAVATLAPLPPEPVSLMNEQAA 265
Query: 544 LAHVALAVEGCGWESADNIPL--MVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAHSF 601
++L + D++ L + L + + + +
Sbjct: 266 QDTLSLMWDTPWHPIQDSMALSRYWRSDLA-------REALF--WHIKQVLEKNNQKNLK 316
Query: 602 QSFNTCYKDTGLWGVYFV-ADRMQLEDMTFSVQHEWIRLCKT-VTPAEVERAKNLLKSNL 659
F+ + + L V E L ++ AE + L
Sbjct: 317 LGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQL 376
Query: 660 FLQL-----DGTTPVCEDIGRQILCYGRRVPLHE-----LEARIDDVTAKDIHEVCTKYI 709
T + R G E +A + +T +++ + +
Sbjct: 377 SKLFATYARTDTDILMSQRLRSQQ-SGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQL 435
Query: 710 WDRCPVVAAVGPTEQLPDYTWLRQ 733
+V E + L++
Sbjct: 436 SQDTTLVLMQPKGEPEVNVKALQE 459
Score = 70.3 bits (172), Expect = 8e-13
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 7 ATQASVAEKSVNVPSTQVTSIDNGLRV---ATEDSGAPTATVGIWIDAGSRYETDANNGV 63
A+ AE P+ Q +DNG AT + + + ++ GS E G
Sbjct: 11 ASNNVQAEALQPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGF 70
Query: 64 AHFLEHMAFK 73
AH L +A
Sbjct: 71 AHLLPRLALM 80
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP:
d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Length = 939
Score = 99.5 bits (247), Expect = 1e-21
Identities = 67/393 (17%), Positives = 119/393 (30%), Gaps = 22/393 (5%)
Query: 359 GTSKRSQTD-LELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQ 417
G+ K Q D L ++ G NA T+ +T FY + +P AV+ LAD I L +
Sbjct: 74 GSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDK 133
Query: 418 AEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ------ 471
ERER + E+ T + T P G N+++L
Sbjct: 134 KYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGG---NLETLSDKPGNP 190
Query: 472 -RQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRY 530
+Q L D+ +Y M L K+A + FG V + P
Sbjct: 191 VQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDA 250
Query: 531 TGSDVRVRDDAMPLAHVALAVEGCGWESAD-NIPLMVANTLIGAWDRSQGSGTNNASRLA 589
+ A+P + + + + + LIG ++ GT +
Sbjct: 251 QKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIG----NRSPGTLSDWLQK 306
Query: 590 AITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEV- 648
E A+S N + + + ++ ++ L + +
Sbjct: 307 QGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAI-FSYLNLLREKGIDKQY 365
Query: 649 --ERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCT 706
E A L + + E + ++ L D AK + E
Sbjct: 366 FDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDA-VNIADRYDAKAVKERLA 424
Query: 707 KYIWDRCPVVAAVGPTEQLPDYTWLRQSMYWIR 739
+ + P E + + Y +
Sbjct: 425 MMTPQNA-RIWYISPKEPHNKTAYFVDAPYQVD 456
Score = 57.9 bits (139), Expect = 1e-08
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 21 STQVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
Q +DNG+ V D A + + + GS + +A G+AH+LEHM+
Sbjct: 20 QYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLM 73
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 85.7 bits (211), Expect = 3e-17
Identities = 60/373 (16%), Positives = 119/373 (31%), Gaps = 31/373 (8%)
Query: 359 GTSKRSQTD-LELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQ 417
GT K + + + NA+TS E T +Y + + A++ A + +
Sbjct: 88 GTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDE 147
Query: 418 AEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQ------ 471
+ +RE + E ++ N +F AT P G +++
Sbjct: 148 SAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGID 207
Query: 472 -RQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVK----PPNVDCAGVVPPA 526
RQ+LL + +A+Y M + G D L L + F V+ P
Sbjct: 208 VRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEE 267
Query: 527 HCRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNAS 586
H + V ++D + +V + + + P LIG +G G S
Sbjct: 268 HLKQLYKIVPIKD--IRNLYVTFPIPDL-QKYYKSNPGHYLGHLIG----HEGPG----S 316
Query: 587 RLAAITAEQGFAHSFQSFNTCYKDTGLWGVYF---VADRMQLEDMTFSVQHEWIRL--CK 641
L+ + ++ + + + + +ED+ + ++I+ +
Sbjct: 317 LLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHM-FQYIQKLRAE 375
Query: 642 TVTPAEVERAKNLLKSNL-FLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKD 700
+ K+L F + I + Y L E +++
Sbjct: 376 GPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTA-EYLLEEFRPDL 434
Query: 701 IHEVCTKYIWDRC 713
I V K +
Sbjct: 435 IEMVLDKLRPENV 447
Score = 54.1 bits (129), Expect = 2e-07
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 28 DNGLRV-ATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
NG++V D ++ + + GS + G++HFL+HM F
Sbjct: 41 ANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFL 87
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc
genomics, PSI-2, protein structure initiative, midwest
CENT structural genomics; 2.15A {Bordetella pertussis}
PDB: 3ivl_A
Length = 197
Score = 69.3 bits (170), Expect = 1e-13
Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 13/192 (6%)
Query: 535 VRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLAAITAE 594
V +R VA S D + L +A T++ + SRL
Sbjct: 16 VTLRRAG-GTPLVAAMYHLPAAGSPDFVGLDLAATILA-------DTPS--SRLYHALVP 65
Query: 595 QGFAHSFQSFNTCYKDTGLWGVYFVADRMQ-LEDMTFSVQHEWIRLCKT-VTPAEVERAK 652
A F D GL + ++ L + E+ERA+
Sbjct: 66 TKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERAR 125
Query: 653 NLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDR 712
+ + V + I G R+ + D+ Y+
Sbjct: 126 SKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRS 184
Query: 713 CPVVAAVGPTEQ 724
PTE+
Sbjct: 185 NRTEGRYIPTEK 196
Score = 28.5 bits (64), Expect = 6.3
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 307 VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQIL 342
+ E+ERA++ + V + I
Sbjct: 116 FSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA 151
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome,
protease-peptide complex, hydrolase, plant protein;
2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1
d.185.1.1 d.185.1.1
Length = 995
Score = 68.8 bits (167), Expect = 4e-12
Identities = 26/176 (14%), Positives = 61/176 (34%), Gaps = 18/176 (10%)
Query: 368 LELEVENIGAHLNAYTSREQTVFYAK-CLKQDVPKAVEILADIIQNSKL----------- 415
+EL ++ LNA+T ++T + +D V++ D + K
Sbjct: 97 VELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEG 156
Query: 416 ------GQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKS 469
+E +GV+ EM+ V + ++ G G ++I +
Sbjct: 157 WHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPN 216
Query: 470 LQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPP 525
L ++ ++ +Y P+ + G D +++ E+ + + +
Sbjct: 217 LTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKF 272
Score = 66.5 bits (161), Expect = 2e-11
Identities = 77/637 (12%), Positives = 165/637 (25%), Gaps = 88/637 (13%)
Query: 142 EIRLLRYLELTEEEKEKVKASYKVARKLEKLEGRNREGEEGE-------MLSLDSVISGR 194
E ++ L+ EE V + +E RE G ML S
Sbjct: 377 EELIMDTLKKLAEEGFDND---AVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYD 433
Query: 195 STPSDSGSCSGDIISPTEPLSLTDSMLLMDDILSDSRLDQLDRIERI---EAILTAENVA 251
P + + + + ++ S + ++ L+ R+ + +
Sbjct: 434 MDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEV 493
Query: 252 QIKPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVTPAE 311
+ K + ++EE + + E + KQ D + V +
Sbjct: 494 EEKNILEKVKAAMTEEDLAELARATE-ELKLKQETPDPPEALRCVPSLNLGDIPKEPTYV 552
Query: 312 VERAKNLLKSNLFLQLDGTTPV--------CEDIGRQILCYGRRVPLHELEARIDGTSKR 363
++ + T + + ++L VPL GT
Sbjct: 553 PTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPL---VPLFCQSLLEMGTKDL 609
Query: 364 SQTDLELEVENIGAHLNAYTS----------REQTVFYAKCLKQDVPKAVEILADIIQNS 413
+ L + ++ Y + + K + ++ ++Q
Sbjct: 610 TFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEV 669
Query: 414 KLGQAEIERERGVILREMQEVETNLQEV-----------VFDHLHATAFQGTPLG----- 457
+ + +R + + + +E L+ + + + Q L
Sbjct: 670 QF--TDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFL 727
Query: 458 NTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNV 517
+T+ L + + +++ T V+ + F ++ P N
Sbjct: 728 HTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787
Query: 518 DCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGA---W 574
V + + + +V A + V + I W
Sbjct: 788 SGGLVTWDGRLPLRNEAIVI---PTQVNYVGKAGNIYSTGYELDGSAYVISKHISNTWLW 844
Query: 575 D--RSQGSGTNNASRLAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSV 632
D R G G + G S+ S Y+D L + D
Sbjct: 845 DRVRVSG-GAYGGF--CDFDSHSGVF-SYLS----YRDPNLLKTLDIYDGTG-------- 888
Query: 633 QHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVP---LHEL 689
+++R V + +A +D +L + V
Sbjct: 889 --DFLRG-LDVDQETLTKAI----IGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRK 941
Query: 690 EARIDDVTAKDIHEVCTKYI-WDRCPVVAAVGPTEQL 725
I + KD + V AV E +
Sbjct: 942 REEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDI 978
Score = 44.9 bits (105), Expect = 1e-04
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 15 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ G V + + G+ R + G+ H L+H
Sbjct: 31 SECKSKAILFKHKKTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLC 85
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 2e-10
Identities = 110/696 (15%), Positives = 204/696 (29%), Gaps = 266/696 (38%)
Query: 8 TQASVAEKSVNVPS------TQVTSIDNGLRVATED--SGAPTATVGIWIDAGSRYETDA 59
+ S+ E + VP+ +Q L+ E P T G D E
Sbjct: 12 SHGSL-EHVLLVPTASFFIASQ-------LQ---EQFNKILPEPTEGFAADD----EPTT 56
Query: 60 NNG-VAHFLEHMAFKLVMGRGQIKPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNE 118
V FL +++ ++P++V Q ++
Sbjct: 57 PAELVGKFLGYVSSL---------------------------VEPSKVGQF-------DQ 82
Query: 119 VADLKLKLAACTQNGRNIVLSNREI-----RLLRYLELTEEEKEKVKASYKVARKLEKLE 173
V L L L L +I +LL+ + T + +++ +Y AR +
Sbjct: 83 V--LNLCLTEFENC----YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA--- 133
Query: 174 GRNREGEEGEMLSLDSVISGRSTPSDSGSCSGDIISPTEPLSLTDSMLLMDDIL-----S 228
R + + L +V G + +++ I +
Sbjct: 134 KRPFDKKSNSAL-FRAVGEGNAQ----------LVA----------------IFGGQGNT 166
Query: 229 DSRLDQLDRIERIEAILTAENVAQIKPEYGPL---LVELSEEQVYMHIKPNEVRQRKKQR 285
D ++L + + Y L L++ S E + +R
Sbjct: 167 DDYFEELRDLYQT---------------YHVLVGDLIKFSAETLS-----ELIRTTLDAE 206
Query: 286 KIDNEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPV-CEDIG-RQILC 343
K+ + + EW+ + TP +L + P+ C IG Q+
Sbjct: 207 KVFTQGLNI---LEWLEN-PSNTP-----------DKDYLL---SIPISCPLIGVIQLAH 248
Query: 344 Y---GRRVPLH--ELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQD 398
Y + + EL + + G + SQ L + A A T ++ F+
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQ-GL------VTAVAIAETDSWES-FF-----VS 295
Query: 399 VPKAVEILADI---IQ--------NSKLGQAEIERERGVILREMQEVETNLQEVVFDHLH 447
V KA+ +L I + + +E GV M + QE V D+++
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV-PSPMLSISNLTQEQVQDYVN 354
Query: 448 ATAFQGTPLGNTILGPTQNIK-SLQRQDLLDYVNAFYQPARMVLSG-------------- 492
T N+ L + ++ SL VN +V+SG
Sbjct: 355 KT--------NSHLPAGKQVEISL--------VNG---AKNLVVSGPPQSLYGLNLTLRK 395
Query: 493 ---AGGVD------------------------HDTLVKLAKEHF-GNVKPPNVDCAG--- 521
G+D H L+ A + ++ NV
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 522 -VVPPAHCRYTGSDVRVRDDAMPLAHV-ALAVEGCGWESADN----------------IP 563
+ P + + GSD+RV ++ V + WE+ +
Sbjct: 456 QI--PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 564 LMVANTLIGAWDRSQGSGTNNASRLAAITAEQGFAH 599
++ G R +GT + + + GF
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINP----DDDYGFKQ 545
Score = 55.1 bits (132), Expect = 8e-08
Identities = 78/475 (16%), Positives = 138/475 (29%), Gaps = 180/475 (37%)
Query: 357 IDGTSKR----SQTDLE--LEVENIGAHLNAYTSREQTVFYA-------KCLKQDVPKA- 402
+D S R S LE L V + A +EQ F D P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT-ASFFIASQLQEQ--FNKILPEPTEGFAADDEPTTP 57
Query: 403 VEILADIIQ--NSKLGQAEIERERGVILREMQEVETN-LQEVVFDHLHATAFQGTPLGNT 459
E++ + +S + +++ + V+ + E E L+ + +HA A +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---NDIHALAAK------- 107
Query: 460 ILGPTQNIKSLQRQDLL-DYVNA----------FYQPA--RMVLSGA-------GG---- 495
L + ++ ++L+ +Y+ A A R V G GG
Sbjct: 108 -LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 496 ---VD-----HDT-------LVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDV----- 535
+ + T L+K + E + +D + G ++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA----EKVFTQ--GLNILEWLE 220
Query: 536 ---RVRDD--------AMP------LAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQ 578
D + P LAH + + G+ P + + L GA SQ
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-----PGELRSYLKGATGHSQ 275
Query: 579 GSGTNNASRL--AAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEW 636
G L A AE S++SF + + + F +
Sbjct: 276 G--------LVTAVAIAE---TDSWESFFVSVRKA-------------ITVL-F-----F 305
Query: 637 I--RLCKTVTPAEVERAKNLLKSNLFLQLDGTTP-----VCEDIGRQILCYGRRVPLHEL 689
I R C P L S L+ + P + + ++
Sbjct: 306 IGVR-CYEAYPNTSLPPSILEDS---LENNEGVPSPMLSI------------SNLTQEQV 349
Query: 690 EARIDDV-----TAKDIHEVCTKYIW----DRCPVVAAVGPTEQLPDY---TWLR 732
+ ++ K + I + VV+ GP + L Y LR
Sbjct: 350 QDYVNKTNSHLPAGKQVE------ISLVNGAKNLVVS--GPPQSL--YGLNLTLR 394
Score = 46.6 bits (110), Expect = 3e-05
Identities = 54/345 (15%), Positives = 95/345 (27%), Gaps = 124/345 (35%)
Query: 387 QTV-----FYAKCLKQDVPKAVEIL--ADIIQNSKLGQ--AEIERE------------RG 425
Q Y A ++ AD G +I +G
Sbjct: 1627 QEQGMGMDLYKTS-----KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 426 VILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQP 485
+RE N ++F+ + + + I + + + LL F QP
Sbjct: 1682 KRIRE------NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQP 1734
Query: 486 ARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAH----CRYTGSDVRVRDDA 541
A ++ A + K + P + AG H Y A
Sbjct: 1735 ALTLMEKA-------AFEDLKSKG--LIPADATFAG-----HSLGE--YA---------A 1769
Query: 542 MPLAHVA--LAVEGCGWESADNIPLMVA---NTLIGAWDRSQGSGTNNASRLAAITAEQG 596
LA +A +++E + + V T+ A R + +N + AI +
Sbjct: 1770 --LASLADVMSIE-------SLVEV-VFYRGMTMQVAVPRDELGRSNYG--MIAINPGR- 1816
Query: 597 FAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLK 656
VA E + + V+ R+ K T VE N
Sbjct: 1817 ----------------------VAASFSQEALQYVVE----RVGKR-TGWLVEIV-NY-- 1846
Query: 657 SNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDI 701
N E +Q + G L + ++ + + I
Sbjct: 1847 -N-----------VE--NQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 36.6 bits (84), Expect = 0.039
Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 70/230 (30%)
Query: 5 CRATQASVAEKSVNVPSTQVT-SIDNG-------LRVATEDSGAPTATVGIWIDAGSRYE 56
R +A + ++P + + S++N L + S V +++ + +
Sbjct: 308 VRCYEAY---PNTSLPPSILEDSLENNEGVPSPMLSI----SNLTQEQVQDYVNKTNSHL 360
Query: 57 TDAN-------NGVAHF--------LEHMAFKL-----VMGRGQIKPEYGPLLVELSEEQ 96
NG + L + L G Q + + SE +
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-------IPFSERK 413
Query: 97 V----------------YMHIKPNEVRQRKKQRKIDNEVADLKLKLAACTQNGRNI-VLS 139
+ + + + + + + D+++ + T +G ++ VLS
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLS 472
Query: 140 NREIRLLRYLELTE----EEKEKVKASYKV------ARKLEKLEGRNREG 179
+ + E + KA++ + A L L RN++G
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 35.8 bits (82), Expect = 0.059
Identities = 53/314 (16%), Positives = 90/314 (28%), Gaps = 108/314 (34%)
Query: 113 RKIDNEVADLKLKLAACTQNG---RNIVLSN-------------REIRLLRYLELTEEEK 156
+ + N AD K G +IV++N + IR Y + E
Sbjct: 1643 QDVWNR-ADNHFK----DTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-NYSAMIFETI 1696
Query: 157 EKVKA-SYKVARKL-EKLEGRNREGEEGEMLSLDSVISGRSTPSDSGSCSGDIISPTEPL 214
K + K+ +++ E E+G LS T T+P
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGL-LSA--------TQF------------TQPA 1735
Query: 215 SLTDSMLLMDDILSDSRLDQLDRIERIEAILTA-----ENVAQIKPEYGPLLVELS---- 265
+D+ S L D A A E A L L+
Sbjct: 1736 LTLMEKAAFEDLKSKG-LIPAD------ATF-AGHSLGEYAA---------LASLADVMS 1778
Query: 266 -EEQVYMHIKPNEVRQR---------KKQRKIDNEDMTFSVQHEWIR--LCKTVTPAEVE 313
E V + V R + + N M ++ + + VE
Sbjct: 1779 IESLVEV------VFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEALQYVVE 1831
Query: 314 RAKNLLKSNLFLQLDGTTPV---CEDIGRQILCYGRRVPLHELEARIDGTSKRSQTDL-E 369
R ++ ++ V E +Q + G L + ++ K + D+ E
Sbjct: 1832 RVGK--RTGWLVE-----IVNYNVE--NQQYVAAGDLRALDTVTNVLN-FIKLQKIDIIE 1881
Query: 370 LEV----ENIGAHL 379
L+ E + HL
Sbjct: 1882 LQKSLSLEEVEGHL 1895
Score = 33.1 bits (75), Expect = 0.45
Identities = 42/208 (20%), Positives = 67/208 (32%), Gaps = 56/208 (26%)
Query: 15 KSVNVPSTQVT-SIDNGLRVATEDSGA-P---TATVGIWIDAGSRYETDANNGVA-HFL- 67
K +N ST T + GL AT+ P + D S+ A+ A H L
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQF--TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 68 E-----HMA--------FKLVMGRGQIKPEYGPLLVELSEEQVYMH-IKPNEVRQRKKQR 113
E +A ++V RG P EL M I P V Q
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVP-RDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 114 KIDNEVADLKLKLAACTQ------N----GRNIVLSNREIRLLRYL-ELTEEEKEKVKAS 162
+ V ++ T N + V + ++R L + + K +
Sbjct: 1825 ALQYVVE----RVGKRTGWLVEIVNYNVENQQYVAAG-DLRALDTVTNVLNFIKLQ---- 1875
Query: 163 YKVARKLEKLEGRNREGEEGEMLSLDSV 190
K+ + +L+ + LSL+ V
Sbjct: 1876 -KI--DIIELQ---------KSLSLEEV 1891
Score = 30.0 bits (67), Expect = 3.9
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 41/124 (33%)
Query: 623 MQLEDMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNL-F--LQLDGTTPVCEDI------ 673
M L + + Q W RA N K F L + PV I
Sbjct: 1633 MDLYKTSKAAQDVW------------NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 674 GRQI------LCYGRRVPLHELEARIDDVTAKDIHEVCTKYIWDRCPVVAAVGPTEQL-- 725
G++I + + V +I K+I+E T Y + L
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIF----KEINEHSTSYTFR--------SEKGLLSA 1728
Query: 726 PDYT 729
+T
Sbjct: 1729 TQFT 1732
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 63.2 bits (152), Expect = 2e-10
Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 35/241 (14%)
Query: 351 HELEARI-DGTSKRSQTDLELEVEN--IGAHLNAYTSREQTVFY-AKCLKQDVPKAVEIL 406
H LE + G+ + + +E + HLNAYT ++TV+ +D + +
Sbjct: 129 HILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVY 188
Query: 407 ADIIQNSKLGQAEIERE-------------------------------RGVILREMQEVE 435
D + + + + E G++ EM+
Sbjct: 189 MDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGAL 248
Query: 436 TNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGG 495
++ E ++ F N G + I +L ++ ++ Y P ++ +
Sbjct: 249 SSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSK 308
Query: 496 VDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDVRVRDDAMPLAHVALAVEGCG 555
+ L+ ++ G + V + Y ++ + +
Sbjct: 309 NNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVA 368
Query: 556 W 556
W
Sbjct: 369 W 369
Score = 37.3 bits (85), Expect = 0.019
Identities = 9/59 (15%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 15 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ + T +V + + P + T + G+ H LEH
Sbjct: 80 EEFKMTYTVYQHKKAKTQVISLGTNDPLDVEQ-AFAFYVKTLTHSGKGIPHILEHSVLS 137
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 4e-07
Identities = 75/519 (14%), Positives = 151/519 (29%), Gaps = 163/519 (31%)
Query: 47 IWIDAGSRYETDANNGVAHFLEHMAFKLVMGRGQIKPEYGPLLVELSEEQ---------- 96
W + V F+E ++ Y L+ + EQ
Sbjct: 68 FWT-----LLSKQEEMVQKFVE----------EVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 97 VYMHIKPNEVRQRKKQRKIDNEVADLKLKLAACT-QNGRNIVL-----SNREIRLLRYLE 150
+ + Q + + LKL+ A + +N+++ S +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW------- 165
Query: 151 LTEEEKEKVKASYKVARKLE------KLEGRNREGEEGEML-SLDSVISGRSTPSDSGSC 203
+ + V SYKV K++ L+ N EML L I T S
Sbjct: 166 VALD----VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 204 SGDIISPTEPL-----------SLTDSMLLMDDILSDSR-LDQLD---RIERIEAILTAE 248
+ I + + +L++ ++ +++ + + +I +LT
Sbjct: 222 N--IKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKI-----LLTTR 273
Query: 249 NVAQIKPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNEDMTFSVQHEWIRLCKTVT 308
QV + +D+ MT T
Sbjct: 274 FK-----------------QVTDFLSAA----TTTHISLDHHSMTL-------------T 299
Query: 309 PAEVER--AK--NLLKSNLFLQLDGTTP-VCEDIGRQILCYGRRVPLHELEARIDGTSKR 363
P EV+ K + +L ++ T P I + + A D
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES---------IRDGLATWDNWKHV 350
Query: 364 SQTDLELEVENIGAHLNAYTSREQ----TVFYAKCLKQDVPKAVEILADIIQNSKLGQAE 419
+ L +E+ L R+ +VF P + I ++ S +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAHIPTILL--SLIWFDV 399
Query: 420 IERERGVILREMQE---VETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLL 476
I+ + V++ ++ + VE +E + + + + +N +L R ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLE-------LKVKLENEYALHRS-IV 450
Query: 477 DYVNAFYQPARMVLSGAGGVDHDTLVKLAKE-----HFG 510
D+ Y + D D L+ + H G
Sbjct: 451 DH----YNIPK-------TFDSDDLIPPYLDQYFYSHIG 478
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.043
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 141 REIRLLRYLELTEEEKEKVKASYKVARK------------LEKLEGRNREGEE 181
RE + R EL K + + A+K +EK + NR ++
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system
response regulator, effector domain, DNA-binding,
phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Length = 112
Score = 33.3 bits (77), Expect = 0.068
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
+AD+ + + ++G+ I L+ +E LL L
Sbjct: 7 TIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELL 40
>2hqn_A Putative transcriptional regulator; phosporylation-independent
response regulator, signaling Pro; NMR {Helicobacter
pylori}
Length = 109
Score = 32.9 bits (76), Expect = 0.088
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
E+ DL + GR + + + +L +L
Sbjct: 8 EIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHL 41
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription
regulation; 1.78A {Mycobacterium tuberculosis}
Length = 110
Score = 32.5 bits (75), Expect = 0.10
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
AD++L + G+ + LS E LLRY
Sbjct: 13 TFADIELDEETHEVWKAGQPVSLSPTEFTLLRYF 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.12
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 14 EKSVNVPSTQVTSIDNGLRVATEDSGAPT----ATV 45
EK + + L++ +DS AP AT+
Sbjct: 18 EKQ------ALKKLQASLKLYADDS-APALAIKATM 46
Score = 29.5 bits (65), Expect = 2.0
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 37/66 (56%)
Query: 155 EKEKVKASYKVARKLEKLEGRNREGEEGEMLSLDSVISGRSTPSDSGSCSGDIISPTEPL 214
EK+ +K KL+ L L DS +P L
Sbjct: 18 EKQALK----------KLQAS---------LKL-------YAD-DS--------APA--L 40
Query: 215 SLTDSM 220
++ +M
Sbjct: 41 AIKATM 46
>2hqr_A Putative transcriptional regulator; phosporylation-independent
response regulator, H. pylori, SY dimer, signaling
protein; NMR {Helicobacter pylori}
Length = 223
Score = 33.6 bits (78), Expect = 0.14
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
E+ DL + GR + + + +L +L
Sbjct: 122 EIGDLTISPDEEKIIYKGREVEVKGKPFEVLTHL 155
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein,
ALPH-beta sandwich, winged-helix, helix helix, DNA
binding protein; HET: DNA MSE; 1.50A {Thermotoga
maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Length = 225
Score = 33.6 bits (78), Expect = 0.15
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
DL L A + + I L+ +E ++L YL
Sbjct: 130 VCGDLILDTATKKAYRGSKEIDLTKKEYQILEYL 163
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein;
1.50A {Streptococcus pyogenes}
Length = 96
Score = 30.9 bits (71), Expect = 0.27
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 119 VADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
DL L + I L+ RE LL L
Sbjct: 2 YRDLVLNPQNRSVNRGDDEISLTKREYDLLNIL 34
>3q9v_A DNA-binding response regulator; response regulator protein, DNA
binding protein; 1.60A {Deinococcus radiodurans}
Length = 133
Score = 31.8 bits (73), Expect = 0.28
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
+ DL L T G + LS +E +L L
Sbjct: 39 SMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 72
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 32.8 bits (76), Expect = 0.30
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
V L++ + NG ++ L+ RE LL L
Sbjct: 138 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVL 171
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 30.5 bits (69), Expect = 1.7
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 64 AH-FLEHMAFKLVMGRGQIKPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNEVADL 122
AH + + +G ++ L+ E V++H + + + DN++A +
Sbjct: 119 AHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALV 178
Query: 123 KLK 125
+LK
Sbjct: 179 RLK 181
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A
{Deinococcus radiodurans}
Length = 249
Score = 30.2 bits (69), Expect = 2.2
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
+ DL L T G + LS +E +L L
Sbjct: 161 SMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics,
protein structure initiative; NMR {Pectobacterium
atrosepticum}
Length = 118
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 281 RKKQRKIDNEDMTF-SVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCE 335
+ Q K +N F +V W T + L++ LF + G + E
Sbjct: 1 KSVQEKRNNTR-AFKTVAKSWFATKTTWSEDYQRSVWTRLETYLFPDI-GNKDIAE 54
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 30.1 bits (67), Expect = 3.0
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 139 SNREI-----RLLRYLELTEEEKEKVKASYKVARKLEKLEGRNREGEEGEMLSLDSV 190
S + R L++ E K +A AR LE+L E E + V
Sbjct: 9 SRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKV 65
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein;
transcriptional activator, helix-winged-helix, sensory
transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB:
1gxp_A 1qqi_A 2z33_A 3t72_A
Length = 106
Score = 27.9 bits (63), Expect = 4.1
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAAC--TQNGRNIVLSNREIRLLRYL 149
E+ L L + + + E +LL +
Sbjct: 10 EMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFF 43
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein
structure initiative, TI protein; HET: GOL; 1.76A
{Bordetella bronchiseptica} PDB: 3k4w_A
Length = 291
Score = 29.0 bits (65), Expect = 4.9
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 141 REIRLLRYLELTEEEKEKVKASYKVARKLEKLEGRNREG 179
L + + EK+ + A +L GR
Sbjct: 251 EYTEWFLTLPIKPDAMEKI--LHGNAERLLAQAGREGHH 287
>3cjp_A Predicted amidohydrolase, dihydroorotase family; structural
genomics, protein structure initiative; 1.85A
{Clostridium acetobutylicum atcc 824}
Length = 272
Score = 29.0 bits (65), Expect = 6.1
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 141 REIRLLRYLELTEEEKEKVKASYKVARKLEKLEGRNR 177
I ++ + V +L +EG +
Sbjct: 235 LSIEAIKKMSNDSYVANAVL--GDNISRLLNIEGHHH 269
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 26.8 bits (60), Expect = 9.2
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 16/70 (22%)
Query: 641 KTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYG-----RRVPLHELEARIDD 695
+ V P E+ LL+ + + +D V R VPL +++
Sbjct: 2 RKVRPEELPA---LLEEGVLV-VD----VRPADRRST---PLPFAAEWVPLEKIQKGEHG 50
Query: 696 VTAKDIHEVC 705
+ + + VC
Sbjct: 51 LPRRPLLLVC 60
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA
complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP:
a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A*
1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A*
1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A*
1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Length = 335
Score = 28.3 bits (62), Expect = 9.4
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 140 NREI-----RLLRYLELTEEEKEKVKASYKVARKLEKLEGRNREGEE 181
N I L + + + K A K A + K + + G E
Sbjct: 12 NGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAE 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,186,229
Number of extensions: 697556
Number of successful extensions: 1915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1828
Number of HSP's successfully gapped: 87
Length of query: 740
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 639
Effective length of database: 3,881,772
Effective search space: 2480452308
Effective search space used: 2480452308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)