RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5653
(740 letters)
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 218
Score = 202 bits (514), Expect = 5e-61
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 3/216 (1%)
Query: 528 CRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASR 587
+ GS+VR+RDD +P A ++LAVEG S + +A + G+++ + + +
Sbjct: 3 AAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIK 62
Query: 588 LAAITAEQGFAHSFQSFNTCYKDTGLWGVYF-VADRMQLEDMTFSVQHEWIRLCKTVTPA 646
L E +F F+ YKD+GLWG + ++D+ +W RL +VT
Sbjct: 63 LLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDT 122
Query: 647 EVERAKNLLKSNLFLQLDGTTPVC--EDIGRQILCYGRRVPLHELEARIDDVTAKDIHEV 704
EVERAK+LLK L + PV +G ++L G ++ L E +ID +T KD+
Sbjct: 123 EVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAW 182
Query: 705 CTKYIWDRCPVVAAVGPTEQLPDYTWLRQSMYWIRF 740
K +WD+ +A G E L DY +R M +R+
Sbjct: 183 AGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW 218
Score = 44.1 bits (103), Expect = 2e-05
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 291 DMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVC--EDIGRQILCYGRRV 348
D+ +W RL +VT EVERAK+LLK L + PV +G ++L G ++
Sbjct: 103 DLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKL 162
Query: 349 PLHELEARIDGTSK 362
L E +ID +
Sbjct: 163 SLGEAFKKIDAITV 176
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 209
Score = 194 bits (493), Expect = 4e-58
Identities = 114/209 (54%), Positives = 148/209 (70%)
Query: 528 CRYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASR 587
CR+TGS + R+D +PLAHVA+AVEG GW DN+ L VAN +IG +D + G G + +S
Sbjct: 1 CRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSP 60
Query: 588 LAAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLCKTVTPAE 647
LA+I A SFQ+FN CY DTGL G +FV D M ++DM F +Q +W+RLC + T +E
Sbjct: 61 LASIAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESE 120
Query: 648 VERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTK 707
V R KNLL++ L LDGTTPVCEDIGR +L YGRR+PL E E+RI +V A+ + EVC+K
Sbjct: 121 VLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSK 180
Query: 708 YIWDRCPVVAAVGPTEQLPDYTWLRQSMY 736
Y +D+CP VA GP EQLPDY +R M+
Sbjct: 181 YFYDQCPAVAGFGPIEQLPDYNRIRSGMF 209
Score = 48.3 bits (114), Expect = 8e-07
Identities = 41/72 (56%), Positives = 51/72 (70%)
Query: 291 DMTFSVQHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPL 350
DM F +Q +W+RLC + T +EV R KNLL++ L LDGTTPVCEDIGR +L YGRR+PL
Sbjct: 100 DMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPL 159
Query: 351 HELEARIDGTSK 362
E E+RI
Sbjct: 160 AEWESRIAEVDA 171
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 217
Score = 173 bits (440), Expect = 1e-50
Identities = 67/210 (31%), Positives = 120/210 (57%), Gaps = 4/210 (1%)
Query: 530 YTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLA 589
+ + ++++ +P H+A+A+EG W + D + ++G WDR+ G+GTN+ S LA
Sbjct: 6 FCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLA 65
Query: 590 -AITAEQGFAHSFQSFNTCYKDTGLWGVYFVA--DRMQLEDMTFSVQHEWIRLCKT-VTP 645
A + A+S+ SF+T Y D+GLWG+Y V + + + + EW R+ ++
Sbjct: 66 VAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISD 125
Query: 646 AEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVC 705
AEV RAK LK+ L L LDG+T + EDIGRQ++ G+R+ E+ ++D +T DI
Sbjct: 126 AEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWA 185
Query: 706 TKYIWDRCPVVAAVGPTEQLPDYTWLRQSM 735
+ ++ + A+G T +P+ +++ + +
Sbjct: 186 NYRLQNKPVSMVALGNTSTVPNVSYIEEKL 215
Score = 45.6 bits (107), Expect = 6e-06
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 296 VQHEWIRLCKT-VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELE 354
+ EW R+ ++ AEV RAK LK+ L L LDG+T + EDIGRQ++ G+R+ E+
Sbjct: 111 ILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVF 170
Query: 355 ARIDGTSK 362
++D +K
Sbjct: 171 EQVDKITK 178
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 237
Score = 138 bits (349), Expect = 8e-38
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 21/221 (9%)
Query: 529 RYTGSDVRVR----DDAMP-LAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQ--GSG 581
+YTG + + +P L H+ + EG + D L TL+G G G
Sbjct: 3 QYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPG 62
Query: 582 TNNASRL-AAITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEWIRLC 640
SRL + + F + +FN Y D+G++G+ + +
Sbjct: 63 KGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTF 122
Query: 641 KT----VTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDV 696
+T EV RAKN LKS+L + L+ ED+GRQ+L +GR++P++E+ ++I+D+
Sbjct: 123 ANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDL 182
Query: 697 TAKDIHEVCTKYIWDRC---------PVVAAVGPTEQLPDY 728
DI V V G D
Sbjct: 183 KPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDV 223
Score = 43.7 bits (102), Expect = 3e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 297 QHEWIRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEAR 356
+ + +T EV RAKN LKS+L + L+ ED+GRQ+L +GR++P++E+ ++
Sbjct: 119 YNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISK 178
Query: 357 IDGTSK 362
I+
Sbjct: 179 IEDLKP 184
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 136 bits (344), Expect = 2e-37
Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
Query: 529 RYTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRL 588
+Y G ++R ++ L H AL E SA+ V ++GA + G+N S L
Sbjct: 3 KYHGGEIREQNGD-SLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKR-GSNATSSL 60
Query: 589 A-AITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQLEDMTFSVQHEW-IRLCKTVTPA 646
A+ +FN Y D+GL+G Y ++ D+ + ++ ++
Sbjct: 61 YQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNP 120
Query: 647 EVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCT 706
+V+ AKN LK+ + ++ + +++G Q L G P + +ID V D+
Sbjct: 121 DVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAK 180
Query: 707 KYIWDRCPVVAAVGPTEQLPDY 728
K++ R +AA G P
Sbjct: 181 KFVSGR-KSMAASGNLGHTPFI 201
Score = 36.8 bits (84), Expect = 0.004
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 288 DNEDMTFSVQHEW-IRLCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGR 346
D+ + ++ ++ +V+ AKN LK+ + ++ + +++G Q L G
Sbjct: 97 SAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGS 156
Query: 347 RVPLHELEARIDGTSK 362
P + +ID +
Sbjct: 157 YTPPSTVLQQIDAVAD 172
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 232
Score = 86.6 bits (213), Expect = 9e-20
Identities = 81/158 (51%), Positives = 119/158 (75%)
Query: 359 GTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQA 418
GT R LE EVE++GAHLNAY++RE T +Y K L +D+PKAVE+LADI+QN L +
Sbjct: 65 GTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDS 124
Query: 419 EIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDY 478
+IE+ER VIL+E+QE +T++++VVF++LHATAFQGTPL ++ GP++N++ L R DL +Y
Sbjct: 125 QIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEY 184
Query: 479 VNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPN 516
++ Y+ RMVL+ AGG++H L+ LA++HF +
Sbjct: 185 LSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTY 222
Score = 84.3 bits (207), Expect = 6e-19
Identities = 39/67 (58%), Positives = 51/67 (76%)
Query: 10 ASVAEKSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEH 69
A+ A+ +VP TQV+ +DNGLRVA+E S PT TVG+WIDAGSRYE++ NNG +F+EH
Sbjct: 1 ATYAQALQSVPETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEH 60
Query: 70 MAFKLVM 76
+AFK
Sbjct: 61 LAFKGTK 67
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 83.0 bits (204), Expect = 3e-18
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 20/176 (11%)
Query: 359 GTSKRSQTD--LELEVENIGAHLNAYTSREQTVFYAKCLK-QDVPKAVEILADIIQNSKL 415
G+ K + +EL ++ LNA+T ++T + +D V++ D + K
Sbjct: 72 GSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKC 131
Query: 416 -----------------GQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGN 458
+E +GV+ EM+ V + ++ G
Sbjct: 132 VDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGV 191
Query: 459 TILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKP 514
G ++I +L ++ ++ +Y P+ + G D +++ E+ +
Sbjct: 192 DSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEA 247
Score = 42.9 bits (100), Expect = 7e-05
Identities = 8/59 (13%), Positives = 15/59 (25%), Gaps = 4/59 (6%)
Query: 15 KSVNVPSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
+ G V + + G+ R + G+ H L+H
Sbjct: 17 SECKSKAILFKHKKTGCEVMSVSNEDENKVFGV----VFRTPPKDSTGIPHILQHSVLC 71
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 76.0 bits (187), Expect = 7e-17
Identities = 27/199 (13%), Positives = 48/199 (24%), Gaps = 61/199 (30%)
Query: 530 YTGSDVRVRDDAMPLAHVALAVEGCGWESADNIPLMVANTLIGAWDRSQGSGTNNASRLA 589
+ G + RVR ++A G A V + S L+
Sbjct: 6 FLGEENRVRFI-----GDSVAAIGIPVNKASLAQYEVLANYLT-------------SALS 47
Query: 590 AITAEQGFAHSFQSFNTCYKDTGLWGVYFVADRMQL--EDMTFSVQHEWIRLCKTVTPAE 647
++ + + D GL+ ++ + ++ V +
Sbjct: 48 ELSGL-----ISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVAD-------LKKGKD 95
Query: 648 VERAKNLLKSNLFLQLDGTTPVCEDIGRQILCYGRRVPLHELEARIDDVTAKDIHEVCTK 707
+ A N K +Q + + E KD K
Sbjct: 96 LSPAINYTKLKNAVQNESVSSPIELNFDA---------------------VKDF--KLGK 132
Query: 708 YIWDRCPVVAAVGPTEQLP 726
AVG LP
Sbjct: 133 ------FNYVAVGDVSNLP 145
Score = 35.6 bits (82), Expect = 0.006
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 303 LCKTVTPAEVERAKNLLKSNLFLQLDGTTPVCEDIGRQ 340
+ ++ A N K +Q + + E
Sbjct: 87 VADLKKGKDLSPAINYTKLKNAVQNESVSSPIELNFDA 124
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase
(MPP) beta chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 222
Score = 78.2 bits (191), Expect = 8e-17
Identities = 79/140 (56%), Positives = 103/140 (73%)
Query: 378 HLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILREMQEVETN 437
HLNAYTSRE TV+YAK L++D+PKAV+IL+DI+ S L + IERER VI+RE +EV+
Sbjct: 75 HLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKM 134
Query: 438 LQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVLSGAGGVD 497
EVVFDHLH ++ PLG TILGP +NIKS+ R DL DY+ Y+ RMVL+GAG VD
Sbjct: 135 YDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVD 194
Query: 498 HDTLVKLAKEHFGNVKPPNV 517
H+ LV+ A+++FG+V
Sbjct: 195 HEKLVQYAQKYFGHVPKSES 214
Score = 70.9 bits (172), Expect = 2e-14
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 20 PSTQVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAF 72
P T+ + + NGL +AT +ATVGI++DAGSR E NNG AHFLEH+AF
Sbjct: 1 PGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAF 54
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 213
Score = 77.8 bits (190), Expect = 8e-17
Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 374 NIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSK---LGQAEIERERGVILRE 430
G L++ SR+ + L K+++ L K L + E + +L++
Sbjct: 62 KEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQ 121
Query: 431 MQEVET-NLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMV 489
+Q+ E + V +HLH+TAFQ TPL G +++++L DL + N + + V
Sbjct: 122 VQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAV 181
Query: 490 LSGAGGVDHDTLVKLAKEHFGNVKP 514
+ G G + H+ LV + +++
Sbjct: 182 VVGTGNIKHEDLVNSIESKNLSLQT 206
Score = 70.8 bits (172), Expect = 2e-14
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 23 QVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHM 70
+VT + NG+ VAT + A TA+VG+ +G+ E NNGV++ +++
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI 50
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 219
Score = 76.5 bits (187), Expect = 2e-16
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 20 PSTQVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGRG 79
+ T + NGL +A+ ++ AP + +G++I AGSRYE N G +H L + +G
Sbjct: 6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSL--TTKG 63
Query: 80 QIKPEYGPLLVELSEEQVYMHIKPNEVRQRKKQRKIDNEVADL 122
+ + + + + N + R + + +
Sbjct: 64 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEF 106
Score = 75.8 bits (185), Expect = 4e-16
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 371 EVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAEIERERGVILRE 430
+E +G L+ ++RE + +CL+ DV +E L ++ + + E+ + + +
Sbjct: 72 GIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRID 131
Query: 431 MQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYVNAFYQPARMVL 490
N Q V ++LHA L N++ P I + +L DYV + ARM L
Sbjct: 132 KAVALQNPQAHVIENLHAA-AYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMAL 190
Query: 491 SGAGGVDHDTLVKLAKEHFG 510
G GV H L ++A++
Sbjct: 191 IGL-GVSHPVLKQVAEQFLN 209
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 202
Score = 72.4 bits (176), Expect = 4e-15
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 2/155 (1%)
Query: 360 TSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQAE 419
T+ RS L E E +G + RE A LK D+P V LAD++ + E
Sbjct: 43 TNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHE 102
Query: 420 IERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLDYV 479
+ R V + LGN + ++ + QD+ D+
Sbjct: 103 LTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPL--LYDGVERVSLQDIKDFA 160
Query: 480 NAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKP 514
+ Y + +SG V+ D + + +
Sbjct: 161 DKVYTKENLEVSGENVVEADLKRFVDESLLSTLPA 195
Score = 69.3 bits (168), Expect = 5e-14
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 31 LRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
L V+ D+ +T+ + + GSRY T +GVAH L F+
Sbjct: 1 LTVSARDAPTKISTLAVKVHGGSRYAT--KDGVAHLLNRFNFQ 41
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
(MPP) alpha chain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 220
Score = 71.6 bits (174), Expect = 1e-14
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 23 QVTSIDNGLRVATEDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFKLVMGR 78
+++S+ NGL+VAT ++ + +G++IDAGSR+E G H L+ +AFK
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHV 62
Score = 70.1 bits (170), Expect = 3e-14
Identities = 41/167 (24%), Positives = 85/167 (50%), Gaps = 2/167 (1%)
Query: 351 HELEARIDGTSK-RSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADI 409
H L+ +++ + +E +G + +SRE ++ A QDV K ++++++
Sbjct: 49 HILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSET 108
Query: 410 IQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKS 469
++ K+ + E++ ++ E+ EV + V+ + LH A+ G LG+ ++ P I S
Sbjct: 109 VRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPS 168
Query: 470 LQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPN 516
+ + LLDY N FY P V + GV H+ ++L ++ G+ + +
Sbjct: 169 ISKYYLLDYRNKFYTPENTVAA-FVGVPHEKALELTGKYLGDWQSTH 214
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli
[TaxId: 562]}
Length = 229
Score = 71.6 bits (174), Expect = 1e-14
Identities = 20/156 (12%), Positives = 50/156 (32%), Gaps = 3/156 (1%)
Query: 358 DGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILADIIQNSKLGQ 417
D + + L + G + + V A Q +P+ + L + + +
Sbjct: 70 DYLAGLALDQLSNQASVGGISFSTNANNGLMV-NANGYTQRLPQLFQALLEGYFSYTATE 128
Query: 418 AEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNIKSLQRQDLLD 477
++E+ + + M E + + + + + S+ +++L
Sbjct: 129 DQLEQAKSWYNQMMDSAE--KGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLA 186
Query: 478 YVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVK 513
Y +A AR G + LA++ +
Sbjct: 187 YRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLG 222
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
562]}
Length = 240
Score = 71.7 bits (174), Expect = 1e-14
Identities = 37/173 (21%), Positives = 58/173 (33%), Gaps = 4/173 (2%)
Query: 349 PLHELEARIDGTSKRSQTDLELEVENIGAHLNAYTSREQTVFYAKCLKQDVPKAVEILAD 408
E + + L ++ G NA T+ +T FY + +P AV+ LAD
Sbjct: 65 HYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLAD 124
Query: 409 IIQNSKLGQAEIERERGVILREMQEVETNLQEVVFDHLHATAFQGTPLGNTILGPTQNI- 467
I L + ERER + E+ T + T P G + +
Sbjct: 125 AIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLS 184
Query: 468 ---KSLQRQDLLDYVNAFYQPARMVLSGAGGVDHDTLVKLAKEHFGNVKPPNV 517
+ +Q L D+ +Y M L K+A + FG V
Sbjct: 185 DKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKES 237
Score = 57.1 bits (136), Expect = 1e-09
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 QVTSIDNGLRVAT-EDSGAPTATVGIWIDAGSRYETDANNGVAHFLEHMAFK 73
Q +DNG+ V D A + + + GS + +A G+AH+LEHM+
Sbjct: 22 QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLM 73
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 28.8 bits (65), Expect = 0.47
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 113 RKIDNEVADLKLKLAACTQNGRNIVLSNR 141
+ + ++KL++ C + G + +S +
Sbjct: 46 TGLGKDEIEVKLQIPVCAEPGDRVAISRQ 74
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 28.8 bits (65), Expect = 0.54
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 113 RKIDNEVADLKLKLAACTQNGRNIVLSNR 141
++AD+KLKL C + G + +S R
Sbjct: 47 TSARGDIADIKLKLPICAEIGDRVAISRR 75
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 30.2 bits (67), Expect = 0.60
Identities = 6/43 (13%), Positives = 18/43 (41%)
Query: 129 CTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
G ++ ++ + L+ +E +K++ S +K+
Sbjct: 121 DIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLN 163
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 30.1 bits (67), Expect = 0.85
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 210 PTEP-LSLTDSMLLMDDILSDSRLDQLDRIERIEAILTAENVAQIKPEYGPLLV 262
P E L++TD +D I+ DS D IE +L + +P + P ++
Sbjct: 3 PEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNIL 56
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 29.5 bits (65), Expect = 1.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
G V++ IR + +EL ++EK + S + +
Sbjct: 126 GVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSV 162
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (64), Expect = 1.4
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
+L+ R + + +L ++E ++K S ++K
Sbjct: 130 SLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQK 168
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 29.0 bits (64), Expect = 1.5
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 129 CTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
VL++ I + ++L E+++++ S ++K
Sbjct: 123 NVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDIQK 165
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 28.6 bits (63), Expect = 1.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEKL 172
G +VL + + L+L EEK K + ++++ L
Sbjct: 125 GTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKAL 164
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 1.9
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
VL I + +T EE+ +K S ++K
Sbjct: 130 SIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNMQK 168
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 28.3 bits (62), Expect = 2.1
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
G V++ I+ + + LT+ E+E ++ S +K+
Sbjct: 126 GTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLT 164
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 28.5 bits (63), Expect = 2.4
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKASYK 164
+ + L + + E++K S
Sbjct: 132 RSKGDGDYELATDVSNDDFLWERIKKSEA 160
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 28.0 bits (62), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARK-LEKL 172
G L + ++L++EE EK++ S K+ R+ LE+L
Sbjct: 111 GVPAKLGKNGAEVAD-IKLSDEEIEKLRNSAKILRERLEEL 150
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 27.4 bits (60), Expect = 4.4
Identities = 4/29 (13%), Positives = 16/29 (55%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKASYK 164
+ + R++ LE+ E +++++ + +
Sbjct: 130 VTAKDGAYRVVEGLEINEFARKRMEITAQ 158
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 27.5 bits (60), Expect = 4.7
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKAS 162
G + N E ++++ L + +E++ +
Sbjct: 126 GFPVTTENGEYKIVQGLSIDAFSQERINVT 155
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 27.0 bits (59), Expect = 5.5
Identities = 3/27 (11%), Positives = 15/27 (55%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKAS 162
+ + ++ +++ L + + +EK+ +
Sbjct: 135 VTIKDKTWKIVEGLPINDFSREKMDLT 161
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 161
Score = 27.1 bits (59), Expect = 5.6
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
G + L + + + +L + E++ + + +
Sbjct: 120 GVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQ 156
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 27.1 bits (59), Expect = 5.7
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
+ L + + L L EEE E + S + +
Sbjct: 130 VTLGKHGVERILELNLNEEELEAFRKSASILKNAIN 165
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 27.1 bits (59), Expect = 6.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 129 CTQNGRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKLEK 171
G V+ I + LEL EEEK++ + S L K
Sbjct: 124 DMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNK 166
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 164
Score = 26.6 bits (58), Expect = 7.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
++L + + L L EEE + AS K R
Sbjct: 126 VILGAGGVEKILELPLNEEEMALLNASAKAVRAT 159
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 26.7 bits (58), Expect = 7.9
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
G + + I + +EL ++E + S ++ +K
Sbjct: 125 GVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKY 161
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 26.7 bits (58), Expect = 8.5
Identities = 7/37 (18%), Positives = 20/37 (54%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
++++ ++ + LT EE+E ++ S + +K+
Sbjct: 127 SLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKV 163
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 26.4 bits (57), Expect = 8.6
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 133 GRNIVLSNREIRLLRYLELTEEEKEKVKASYKVARKL 169
++ + L+LT +E+EK+ S ++
Sbjct: 119 SYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQR 155
>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 299
Score = 27.1 bits (59), Expect = 8.8
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 206 DIISPTEPLSLTDSMLLMDDILSDSRLDQLDRIERIEAILTAENVAQIKPEYGPLLV 262
+ P P D + ++ + D I + + + K YGP +V
Sbjct: 7 RVDDPKAPAFPADDLY---SMVPLNDKRAYDIYNVIARLFDNSELHEYKKGYGPEMV 60
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 26.6 bits (58), Expect = 8.9
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 149 LELTEEEKEKVKASYKVARKLEKL 172
+ L + + + ++ S K+ + K+
Sbjct: 139 INLDQADLDLLQKSAKIVDENCKM 162
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.5 bits (57), Expect = 9.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 489 VLSGAGGVDHDTLVKLAKEHFGNVK 513
VLSG V T+V+ +E N+
Sbjct: 6 VLSGPSAVGKSTVVRCLRERIPNLH 30
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 26.2 bits (57), Expect = 9.4
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 136 IVLSNREIRLLRYLELTEEEKEKVKASYKVARK 168
++ N L+ E+ ++ +K
Sbjct: 124 LLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK 156
>d1opca_ a.4.6.1 (A:) OmpR {Escherichia coli [TaxId: 562]}
Length = 99
Score = 25.4 bits (55), Expect = 9.6
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 118 EVADLKLKLAA--CTQNGRNIVLSNREIRLLRYL 149
KL L + + L++ E +L+ L
Sbjct: 3 AFGKFKLNLGTREMFREDEPMPLTSGEFAVLKAL 36
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 26.0 bits (57), Expect = 9.6
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 496 VDHDTLVKLAKEHFGNVKPPNVDCAGVVPPAHCRYTGSDV--RVRDDAMPLAHV 547
D L+ + +E + +PP R+ DV + +P+ HV
Sbjct: 79 GDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 132
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
{Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Length = 170
Score = 26.3 bits (57), Expect = 9.9
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 149 LELTEEEKEKVKASYKVARKL 169
++++E +K S + ++
Sbjct: 144 TPVSDKELAALKRSAETLKET 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,688,744
Number of extensions: 127863
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 62
Length of query: 740
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 648
Effective length of database: 1,144,436
Effective search space: 741594528
Effective search space used: 741594528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)