BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5654
(224 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRD5|EXD1_XENLA Exonuclease 3'-5' domain-containing protein 1 OS=Xenopus laevis
GN=exd1 PE=2 SV=1
Length = 444
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 128 VVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLE 187
+ L ++++ G N G+++ S +VY+FD++ V GL +LE
Sbjct: 113 AIRHLQNQKVISIGAVGQNICRHGKLSWLQFATRS-RVYLFDVLVLGSKVFKNGLQMVLE 171
Query: 188 SENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+ ++KVIHDCR +L Q+GI L NVFDTQ+
Sbjct: 172 DKGILKVIHDCRWLGDILSHQYGIILNNVFDTQV 205
>sp|Q8CDF7|EXD1_MOUSE Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus
GN=Exd1 PE=2 SV=1
Length = 570
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENV 191
+ + +++ EG N G++ + S +VY+FD+ GL +LE + +
Sbjct: 152 IKKQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDIFLLGSRAFNNGLQMILEDKRI 210
Query: 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 211 LKVIHDCRWLSDCLSHQYGIMLNNVFDTQV 240
>sp|Q8NHP7|EXD1_HUMAN Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens
GN=EXD1 PE=2 SV=4
Length = 514
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 127 SVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLL 186
+ + + + +++ EG N G++ + + +VY+FD+ GL +L
Sbjct: 90 AAILHIKKQNVLSVAAEGANVCRHGKLCWLQVAT-NCRVYLFDIFLLGSRAFHNGLQMIL 148
Query: 187 ESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
E + ++KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 149 EDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQV 183
>sp|Q0P3U3|EXD1_DANRE Exonuclease 3'-5' domain-containing protein 1 OS=Danio rerio
GN=exd1 PE=2 SV=1
Length = 378
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 148 GIKGQITLFSLGLLSGQV-YIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLY 206
G GQ L L + + +V Y+FD++ GLS +LE+ +++KV+HDCR + L
Sbjct: 145 GQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILKVLHDCRCITRCLR 204
Query: 207 EQFGITLRNVFDTQL 221
+F + L NVFDTQ+
Sbjct: 205 TEFRVQLTNVFDTQV 219
>sp|Q6AJF4|RND_DESPS Ribonuclease D OS=Desulfotalea psychrophila (strain LSv54 / DSM
12343) GN=rnd PE=3 SV=1
Length = 374
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 113 LQNTKVITNIKECSSVVEELMRNELVTFDCEGI-NPGIKGQITLFSLGLLSGQVYIFDLV 171
++ +I+ ++ +V + ++ + V D E + Q+ L + L + Y D +
Sbjct: 1 MKQENIISTTEDLKKIVNKALKLDAVGLDTEFVWERTYYPQLGLIQIALSDEECYAIDPL 60
Query: 172 TCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+ ++ L +LL N IK++HD D I++ + G T +N+FDT+L
Sbjct: 61 SIKDL---SPLGELLADRNTIKILHDAPQDLIIMSQATGATPQNIFDTRL 107
>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
GN=EXD2 PE=1 SV=2
Length = 621
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 94 PSSNGGYVANNSDNFKTKVLQNTKVITNIKECS-SVVEELMRNELVTF-----DCEGINP 147
P + + + ++K ++L+ KV+T +E +E L+R+EL F DCE +N
Sbjct: 56 PEDDQLHSSAPRSSWKERILK-AKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVN- 113
Query: 148 GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGG-----LSKLLESENVIKVIHDCRNDS 202
++G+ + SL ++ + LV P+++ G L +L ++KV C D+
Sbjct: 114 -LEGKASPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDA 172
Query: 203 ILLYEQFGITLRNVFDTQLLFL 224
L + +G+ +R D + L +
Sbjct: 173 SKLLQDYGLVVRGCLDLRYLAM 194
>sp|A9H9B7|RND_GLUDA Ribonuclease D OS=Gluconacetobacter diazotrophicus (strain ATCC
49037 / DSM 5601 / PAl5) GN=rnd PE=3 SV=1
Length = 393
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 118 VITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVV 177
+IT ++ + VVE L R V+ D E + + L L+GQ + + T +
Sbjct: 14 LITTTEDLTGVVERLRREPFVSIDTEFVRE--RTYWPELCLVQLAGQDEVVVVDTLAPGI 71
Query: 178 GTGGLSKLLESENVIKVIHDCRND-SILLYEQFGITLRNVFDTQL 221
L LL+ V+KV H R D I LY FG +FDTQ+
Sbjct: 72 DLAPLGVLLDDPEVVKVFHAARQDLEIFLY-LFGHLPAALFDTQV 115
>sp|Q1QLI8|RND_NITHX Ribonuclease D OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
GN=rnd PE=3 SV=2
Length = 382
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 118 VITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVV 177
+IT E +SV L +VT D E + + T + L + + + + E V
Sbjct: 3 LITTTAELASVCARLANYPVVTVDTEFLR-----ETTYYPL------LCVVQMASPDEAV 51
Query: 178 GTGGLSK---------LLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
L++ L+ +E V+KV H R D +++ Q GI +FDTQ+
Sbjct: 52 VVDALAEGIDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQV 104
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260
/ CGDNIH1) GN=rnd PE=3 SV=2
Length = 395
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 118 VITNIKECSSVVEELMRNELVTFDCEGINPGIKG-QITLFSLGLLSGQVYIFDLVTCPEV 176
+IT ++ +++ L R VT D E + ++ + LG + V + D + PE+
Sbjct: 14 LITKSEDLAALCTTLRREPYVTIDTEFMRERTYWPELCVVQLGG-ADCVAVIDTL-APEL 71
Query: 177 VGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+ +LL VIKV H CR D + +FG + +FDTQ+
Sbjct: 72 -DLAPVGELLADPAVIKVFHACRQDIEIFLLRFGSIPQPMFDTQV 115
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2
Length = 777
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 190 NVIKVIHDCRNDSILLYEQFGITLRNVFDT 219
N+IKV H D I L FG+ + N+FDT
Sbjct: 290 NIIKVFHGATMDIIWLQRDFGLYVVNLFDT 319
>sp|Q9S1G2|DPO1_RHILE DNA polymerase I OS=Rhizobium leguminosarum GN=polA PE=3 SV=1
Length = 1016
Score = 32.0 bits (71), Expect = 3.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 182 LSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQLL 222
L LLE E+V+KV + + D +LL +++GI R+ DT L+
Sbjct: 488 LKALLEDESVLKVAQNLKYDYLLL-KRYGIETRSFDDTMLI 527
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3
SV=2
Length = 376
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 176 VVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
V G ++LLE V+KV+H C D + G +FDTQL
Sbjct: 65 VRDWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQL 110
>sp|Q86HT1|PSIL_DICDI Protein psiL OS=Dictyostelium discoideum GN=psiL PE=3 SV=1
Length = 730
Score = 31.6 bits (70), Expect = 4.6, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 38/162 (23%)
Query: 50 PESKANLTHSSPP--ASLAQNQTFKQRFNSLVLKTIAQNTEK----------DQR----- 92
PE ++ T +SP ++ + FK F S V ++N+ K DQ
Sbjct: 73 PELSSDDTKTSPNTLGTMQYPELFKYHFTSNVDAPASKNSGKNLPMKIQFKLDQDNSGFY 132
Query: 93 -------YPSSNGGY----------VANNSDNFKTKVLQNTKVITNIKECSSVVEE---- 131
+P N GY + N NF V N++ N E + +
Sbjct: 133 TFFNQTFFPIDNMGYDVDPSFRIYKQSGNYHNFHFCVKMNSRFTYNGGEVFNFKGDDDLW 192
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTC 173
+ ++ + D GI+P G + L +LGL+ +VY DL C
Sbjct: 193 VYIDDKLVVDVGGIHPAQDGSVNLDTLGLIKNKVYPLDLFYC 234
>sp|Q4JIJ2|MTRR_BOVIN Methionine synthase reductase OS=Bos taurus GN=MTRR PE=2 SV=1
Length = 695
Score = 31.2 bits (69), Expect = 5.9, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 32 GKVLKNNAINLTQIPLSPPESKANLTHSSPPASLA 66
KVL+ NA+N Q + +A+LTHS PP S A
Sbjct: 202 AKVLEQNAVNSNQSSTLIVDFEASLTHSVPPLSQA 236
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 124 ECSSVVEE----LMRNELVTFDCEG---INPGIKGQITLFSLGLLSGQVYIFDLVTCPEV 176
+CS + E+ L ++V FD E N G G++ L L + + Y+F + +
Sbjct: 61 DCSFLSEDISMSLSDGDVVGFDMEWPPLYNRGKLGKVALIQLCVSESKCYLFHVSSMS-- 118
Query: 177 VGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFD 218
V GL LLE++ V K D L F I L+N +
Sbjct: 119 VFPQGLKMLLENKAVKKAGVGIEGDQWKLLRDFDIKLKNFVE 160
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnd PE=3 SV=1
Length = 399
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 185 LLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQLL 222
LL + V+K++H C D ++ ++F R + DTQ++
Sbjct: 96 LLANPKVLKILHSCSEDLLVFLQEFDQLPRPMIDTQIM 133
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,723,608
Number of Sequences: 539616
Number of extensions: 3157422
Number of successful extensions: 7437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 7384
Number of HSP's gapped (non-prelim): 102
length of query: 224
length of database: 191,569,459
effective HSP length: 113
effective length of query: 111
effective length of database: 130,592,851
effective search space: 14495806461
effective search space used: 14495806461
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)