Query psy5654
Match_columns 224
No_of_seqs 137 out of 1104
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:15:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 99.6 1.7E-15 5.9E-20 141.6 13.5 105 116-223 110-215 (428)
2 2e6m_A Werner syndrome ATP-dep 99.6 1.1E-14 3.9E-19 121.9 9.8 106 116-223 17-130 (208)
3 2hbj_A Exosome complex exonucl 99.5 4.8E-14 1.7E-18 130.8 13.5 106 115-223 86-192 (410)
4 1yt3_A Ribonuclease D, RNAse D 99.5 1.4E-13 4.8E-18 125.7 11.5 104 116-223 3-107 (375)
5 1vk0_A Hypothetical protein; h 99.3 7.1E-12 2.4E-16 106.6 9.0 102 118-222 23-141 (206)
6 3cym_A Uncharacterized protein 99.2 2.1E-11 7.3E-16 114.0 7.9 102 117-223 19-125 (440)
7 2kfn_A Klenow fragment of DNA 99.1 1.8E-10 6.3E-15 111.3 10.9 106 115-223 6-123 (605)
8 3pv8_A DNA polymerase I; DNA p 98.7 9.1E-09 3.1E-13 99.6 5.2 84 135-223 29-114 (592)
9 1x9m_A DNA polymerase; DNA plo 98.3 3.7E-07 1.3E-11 89.7 5.4 83 138-223 2-95 (698)
10 4dfk_A DNA polymerase I, therm 98.2 3.5E-07 1.2E-11 87.7 1.9 74 136-223 11-85 (540)
11 1bgx_T TAQ DNA polymerase; DNA 96.6 0.00054 1.8E-08 68.7 1.8 74 135-223 304-377 (832)
12 3v9w_A Ribonuclease T; DEDD nu 95.2 0.012 4.2E-07 49.3 3.6 105 119-223 21-175 (235)
13 2p1j_A POLIII, DNA polymerase 78.5 4.3 0.00015 32.3 6.1 86 134-221 11-128 (186)
14 2kt5_B ICP27; chaperone, mRNA 66.3 3.1 0.00011 25.9 1.8 24 22-55 14-37 (40)
15 2f96_A Ribonuclease T; RNAse, 60.1 11 0.00037 30.7 4.8 32 190-221 126-165 (224)
16 3mxm_B Three prime repair exon 55.5 17 0.00057 30.4 5.2 41 181-221 107-157 (242)
17 1wlj_A Interferon stimulated g 46.0 38 0.0013 26.7 5.8 37 181-221 76-112 (189)
18 2igi_A Oligoribonuclease; RNAs 35.3 96 0.0033 23.8 6.5 27 181-207 87-117 (180)
19 3swy_A Cyclic nucleotide-gated 29.7 20 0.00068 23.1 1.2 14 67-80 31-44 (46)
20 2gui_A DNA polymerase III epsi 24.5 1.8E+02 0.006 22.5 6.3 38 181-220 88-134 (194)
21 3swf_A CGMP-gated cation chann 24.3 34 0.0012 24.2 1.7 16 67-82 33-48 (74)
22 3u3y_B Three prime repair exon 20.9 1E+02 0.0036 27.0 4.6 40 182-221 108-157 (314)
23 3brv_B NF-kappa-B essential mo 20.6 35 0.0012 23.8 1.1 25 67-91 27-51 (70)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.63 E-value=1.7e-15 Score=141.58 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=95.4
Q ss_pred cEEecCHHHHHHHHHHHccCCeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceEE
Q psy5654 116 TKVITNIKECSSVVEELMRNELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKV 194 (224)
Q Consensus 116 ~~vIdt~eeLa~lie~L~~~~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV 194 (224)
|.+|++.++++.+++.+...+.++||+|+... .+.++++++||++. +.+|+||+..+.... ..|+++|+++.+.||
T Consensus 110 y~~I~t~e~L~~~l~~L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~-~~~~lidpl~l~~~l--~~L~~lL~dp~i~KV 186 (428)
T 3saf_A 110 CHFISSLDELVELNEKLLNCQEFAVNLEHHSYRSFLGLTCLMQISTR-TEDFIIDTLELRSDM--YILNESLTDPAIVKV 186 (428)
T ss_dssp EEEECSHHHHHHHHHHHTTCSEEEEEEEEECTTCSSCEEEEEEEECS-SCEEEEETTTTGGGG--GGGHHHHTCTTSEEE
T ss_pred cEEECCHHHHHHHHHHHhcCCeEEEEEEecCCCCCCCeEEEEEEEeC-CcEEEEEeccchhhH--HHHHHHHcCCCceEE
Confidence 77899999999999999999999999999877 78899999999985 478999998875333 689999999999999
Q ss_pred EEecHHHHHHHHHhcCCccCCccchhhcc
Q psy5654 195 IHDCRNDSILLYEQFGITLRNVFDTQLLF 223 (224)
Q Consensus 195 ~Hd~K~Dl~lL~~~~GI~L~nvFDTqLAa 223 (224)
+|++|+|+.+|++.+|+.+.++||||+|+
T Consensus 187 ~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa 215 (428)
T 3saf_A 187 FHGADSDIEWLQKDFGLYVVNMFDTHQAA 215 (428)
T ss_dssp ESSCHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred EeehHHHHHHHHHHcCCCcCceeechhHH
Confidence 99999999999778999999999999986
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.56 E-value=1.1e-14 Score=121.88 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=88.5
Q ss_pred cEEecCHHHHH----HHHHHHccCCeEEEEEeeeCC---CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcC
Q psy5654 116 TKVITNIKECS----SVVEELMRNELVTFDCEGINP---GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLES 188 (224)
Q Consensus 116 ~~vIdt~eeLa----~lie~L~~~~~Ia~D~E~~~l---~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed 188 (224)
+.+|++.+++. .+++.+.....+++|+|+.+. ++.+.++++|+++.++.+|++|+....... ..|+++|++
T Consensus 17 i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~--~~L~~lL~d 94 (208)
T 2e6m_A 17 IVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFP--QGLKMLLEN 94 (208)
T ss_dssp EEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCC--HHHHHHHTC
T ss_pred EEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccch--HHHHHHhcC
Confidence 67899999998 555666677889999998764 456889999999866789999886554333 579999999
Q ss_pred CCceEEEEecHHHHHHHHHhcCCccCCccc-hhhcc
Q psy5654 189 ENVIKVIHDCRNDSILLYEQFGITLRNVFD-TQLLF 223 (224)
Q Consensus 189 ~~I~KV~Hd~K~Dl~lL~~~~GI~L~nvFD-TqLAa 223 (224)
+.+.||+||+|+|+..|.+.+|+.+.++|| ||+|+
T Consensus 95 ~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAa 130 (208)
T 2e6m_A 95 KSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVAN 130 (208)
T ss_dssp TTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHH
T ss_pred CCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHH
Confidence 999999999999999998679999988999 89985
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.54 E-value=4.8e-14 Score=130.83 Aligned_cols=106 Identities=21% Similarity=0.285 Sum_probs=92.2
Q ss_pred CcEEecCHHHHHHHHHHHccCCeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceE
Q psy5654 115 NTKVITNIKECSSVVEELMRNELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIK 193 (224)
Q Consensus 115 ~~~vIdt~eeLa~lie~L~~~~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~K 193 (224)
.+.+|++.++++.+++.+.....+++|+|+.+. .+.++++++|+++. +.+|++|...+.... ..|+++|+++.+.|
T Consensus 86 ~~~~I~t~~~L~~~~~~L~~~~~vavDtE~~~~~~~~~~l~liQla~~-~~~ylid~l~l~~~l--~~L~~lL~d~~i~K 162 (410)
T 2hbj_A 86 VPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTR-ERDYLVDTLKLRENL--HILNEVFTNPSIVK 162 (410)
T ss_dssp CCEEECSHHHHHHHHHHHTTCSEEEEEEEEECSSSSSCEEEEEEEECS-SCEEEEETTTTTTTG--GGGHHHHTCTTSEE
T ss_pred CcEEeCCHHHHHHHHHHHhhCCceEEEeeecCCcCCCCcEEEEEEEEC-CcEEEEechhhhhhH--HHHHHHHcCCCceE
Confidence 367898999999999998888899999999877 67899999999984 578999975543222 57999999999999
Q ss_pred EEEecHHHHHHHHHhcCCccCCccchhhcc
Q psy5654 194 VIHDCRNDSILLYEQFGITLRNVFDTQLLF 223 (224)
Q Consensus 194 V~Hd~K~Dl~lL~~~~GI~L~nvFDTqLAa 223 (224)
|+||+|+|+.+|++.+|+.+.++||||+|+
T Consensus 163 V~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa 192 (410)
T 2hbj_A 163 VFHGAFMDIIWLQRDLGLYVVGLFDTYHAS 192 (410)
T ss_dssp EESSCHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred EEEehHHHHHHHHHHcCCCcCCEEEcHHHH
Confidence 999999999999877999998899999986
No 4
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.48 E-value=1.4e-13 Score=125.66 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=90.1
Q ss_pred cEEecCHHHHHHHHHHHccCCeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceEE
Q psy5654 116 TKVITNIKECSSVVEELMRNELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKV 194 (224)
Q Consensus 116 ~~vIdt~eeLa~lie~L~~~~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV 194 (224)
|.+|++.++++.+++.+...+.+++|+|+... .+.+.++++|+++. +.+|++|...+. .. ..|+++|+++.+.||
T Consensus 3 ~~~I~t~~~l~~~~~~l~~~~~va~D~E~~~~~~~~~~l~liqla~~-~~~~lid~~~l~-~~--~~L~~ll~d~~i~Kv 78 (375)
T 1yt3_A 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDG-EHLALIDPLGIT-DW--SPLKAILRDPSITKF 78 (375)
T ss_dssp CEEECSHHHHHHHHHHHTTSSEEEEEEEEECCSCSSCEEEEEEEECS-SCEEEECGGGCS-CC--HHHHHHHHCTTSEEE
T ss_pred eEEeCCHHHHHHHHHHHcCCCeEEEEeeecCCCcCCCceEEEEEecC-CcEEEEeCCCCC-Ch--HHHHHHHcCCCceEE
Confidence 67888889999999998888889999999877 66789999999984 478999864332 22 579999999999999
Q ss_pred EEecHHHHHHHHHhcCCccCCccchhhcc
Q psy5654 195 IHDCRNDSILLYEQFGITLRNVFDTQLLF 223 (224)
Q Consensus 195 ~Hd~K~Dl~lL~~~~GI~L~nvFDTqLAa 223 (224)
+||+|+|+..|++.+|+.+.++||||+|+
T Consensus 79 ~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa 107 (375)
T 1yt3_A 79 LHAGSEDLEVFLNVFGELPQPLIDTQILA 107 (375)
T ss_dssp ESSCHHHHHHHHHHHSSCCSSEEEHHHHH
T ss_pred EeeHHHHHHHHHHHcCCCCCcEEEcHHHH
Confidence 99999999999867999999999999986
No 5
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.29 E-value=7.1e-12 Score=106.57 Aligned_cols=102 Identities=19% Similarity=0.149 Sum_probs=77.1
Q ss_pred EecCHHHHHHHHHHH------ccCCeEEEEEeeeCC-------Ccc--ceEEEEEEEeeCCeEEEEeCC-CCccccccch
Q psy5654 118 VITNIKECSSVVEEL------MRNELVTFDCEGINP-------GIK--GQITLFSLGLLSGQVYIFDLV-TCPEVVGTGG 181 (224)
Q Consensus 118 vIdt~eeLa~lie~L------~~~~~Ia~D~E~~~l-------~~~--g~L~lIQIat~~g~a~lIDi~-al~~l~~~~~ 181 (224)
.|.+.+++..+++.+ ....++|||+|+.+. ... ++++++|+|+.+ .+++|++. ..+... ..
T Consensus 23 ~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~-~~~l~~l~~~~~~~L--~~ 99 (206)
T 1vk0_A 23 DVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRN-LCLFLRLPKPFHDNL--KD 99 (206)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSS-EEEEEECCSSCCGGG--HH
T ss_pred EEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCC-CeEEEeccccCCccH--HH
Confidence 344555555555544 446789999999742 133 489999999864 69999982 111111 23
Q ss_pred hHhhhcCCCceEEEEecHHHHHHHHHhcCCccCCccchh-hc
Q psy5654 182 LSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQ-LL 222 (224)
Q Consensus 182 Lr~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L~nvFDTq-LA 222 (224)
|+.+|+|+++.||||+++.|+..|++.+|+.+.++|||+ +|
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la 141 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLA 141 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHH
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHH
Confidence 789999999999999999999999989999999999986 65
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.20 E-value=2.1e-11 Score=114.02 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=85.1
Q ss_pred EEecCHHHHHHHHHHHccC-CeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCc---cccccchhHhhhcCCCc
Q psy5654 117 KVITNIKECSSVVEELMRN-ELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCP---EVVGTGGLSKLLESENV 191 (224)
Q Consensus 117 ~vIdt~eeLa~lie~L~~~-~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~---~l~~~~~Lr~lLed~~I 191 (224)
.+|++.++++.+++.+... +.++||+|+... .+.++++++||++.++.+||||..... ... ..|+++|+++
T Consensus 19 ~~I~t~e~L~~~~~~L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l--~~L~~lL~d~-- 94 (440)
T 3cym_A 19 NVIDTLPAFRDYCSELASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADW--NDFNRAVGDA-- 94 (440)
T ss_dssp CEECSHHHHHHHHHHHHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCH--HHHHHHHTTC--
T ss_pred EeeCCHHHHHHHHHHHHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCH--HHHHHHHCCC--
Confidence 4678889999999988776 789999999876 668899999999877778999873211 112 5799999997
Q ss_pred eEEEEecHHHHHHHHHhcCCccCCccchhhcc
Q psy5654 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQLLF 223 (224)
Q Consensus 192 ~KV~Hd~K~Dl~lL~~~~GI~L~nvFDTqLAa 223 (224)
.||+|++|+|+.+|. .+|+.+.++|||++|+
T Consensus 95 ~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa 125 (440)
T 3cym_A 95 VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAA 125 (440)
T ss_dssp EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHH
T ss_pred CEEEEcCHHHHHHHH-HcCCcCCceehHHHHH
Confidence 699999999999996 7999999899999985
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.13 E-value=1.8e-10 Score=111.27 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=88.1
Q ss_pred CcEEecCHHHHHHHHHHHccCCeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCC-----c-----cccccchhH
Q psy5654 115 NTKVITNIKECSSVVEELMRNELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTC-----P-----EVVGTGGLS 183 (224)
Q Consensus 115 ~~~vIdt~eeLa~lie~L~~~~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al-----~-----~l~~~~~Lr 183 (224)
.|.+|++.++++.|++.+...+.++||+|+.+. ++.+++++++++..+++++|+++... . ... ..|+
T Consensus 6 ~y~~I~~~~~l~~~~~~l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl--~~L~ 83 (605)
T 2kfn_A 6 NYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERAL--ELLK 83 (605)
T ss_dssp SSEECCSHHHHHHHHHHHHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHH--HHHH
T ss_pred heEEecCHHHHHHHHHhcccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHH--HHHH
Confidence 367788888999999988777889999999887 77889999999976788888866431 0 111 4689
Q ss_pred hhhcCCCceEEEEecHHHHHHHHHhcCCccCC-ccchhhcc
Q psy5654 184 KLLESENVIKVIHDCRNDSILLYEQFGITLRN-VFDTQLLF 223 (224)
Q Consensus 184 ~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L~n-vFDTqLAa 223 (224)
++|+++.+.||+||+|+|+..|. ++|+.+.+ +||||+|+
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laa 123 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLES 123 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHH
T ss_pred HHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHH
Confidence 99999999999999999999996 58999976 79999986
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=98.70 E-value=9.1e-09 Score=99.62 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceEEEEecHHHHHHHHHhcCCcc
Q psy5654 135 NELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITL 213 (224)
Q Consensus 135 ~~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L 213 (224)
....++|+|.... ++.+++++++++..+ ++||+++... ... ..|+++|+++.+.||+||+|+|+++|. .+|+.+
T Consensus 29 ~~~~aldtE~~~~~~~~a~Lvgisla~~~-~a~yIp~~~~-~~l--~~Lk~lLed~~i~KV~hn~K~Dl~vL~-~~Gi~l 103 (592)
T 3pv8_A 29 ADKAALVVEVVEENYHDAPIVGIAVVNEH-GRFFLRPETA-LAD--PQFVAWLGDETKKKSMFDSKRAAVALK-WKGIEL 103 (592)
T ss_dssp CSEEEEEEECCSSSCTTCCCCEEEEEETT-EEEEECHHHH-TTC--HHHHHHHTCTTSEEEESSHHHHHHHHH-HTTCCC
T ss_pred ccCcEEEEEEcCCccCcccEEEEEEEcCC-ceEEEccchh-hHH--HHHHHHHhCCCCeEEEechHHHHHHHH-HcCCCC
Confidence 3457899998877 788999999999854 6899876321 122 579999999999999999999999996 599999
Q ss_pred CC-ccchhhcc
Q psy5654 214 RN-VFDTQLLF 223 (224)
Q Consensus 214 ~n-vFDTqLAa 223 (224)
.+ +||||+|+
T Consensus 104 ~g~~fDTmLAA 114 (592)
T 3pv8_A 104 CGVSFDLLLAA 114 (592)
T ss_dssp CCEEEEHHHHH
T ss_pred CCccchHHHHH
Confidence 54 79999986
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.33 E-value=3.7e-07 Score=89.66 Aligned_cols=83 Identities=16% Similarity=0.066 Sum_probs=66.7
Q ss_pred EEEEEeeeCC-CccceEEEEEEEeeC-CeEEEEeCCCCccccccchhHhhhcCCCceEEEEec-HHHHHHHHHhc-----
Q psy5654 138 VTFDCEGINP-GIKGQITLFSLGLLS-GQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDC-RNDSILLYEQF----- 209 (224)
Q Consensus 138 Ia~D~E~~~l-~~~g~L~lIQIat~~-g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV~Hd~-K~Dl~lL~~~~----- 209 (224)
++||+|+.++ ...++++++|+.... +..+++|....+... ..|+++|+ +.+.||+||+ |+|+.+|.+.+
T Consensus 2 vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l--~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 2 IVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYL--DALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp EEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHH--HHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred EEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHH--HHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 7899999988 667889999999633 578888765333233 67999999 9999999999 99999997543
Q ss_pred -CCccC--Cccchhhcc
Q psy5654 210 -GITLR--NVFDTQLLF 223 (224)
Q Consensus 210 -GI~L~--nvFDTqLAa 223 (224)
|+.+. .+||||+|+
T Consensus 79 ~Gi~l~~~~~~DTmlaa 95 (698)
T 1x9m_A 79 REFHLPRENCIDTLVLS 95 (698)
T ss_dssp CCCCCCGGGEEEHHHHH
T ss_pred CCccCCCCcchhHHHHH
Confidence 98876 479999986
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.20 E-value=3.5e-07 Score=87.68 Aligned_cols=74 Identities=18% Similarity=0.030 Sum_probs=62.2
Q ss_pred CeEEEEEeeeCC-CccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceEEEEecHHHHHHHHHhcCCccC
Q psy5654 136 ELVTFDCEGINP-GIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLR 214 (224)
Q Consensus 136 ~~Ia~D~E~~~l-~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L~ 214 (224)
+++++|+|.... .+.+++++++++. ++++|+++ ... ..|+++|++ +.||+||+|+|+. ++|+.+.
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~-~~~a~~i~-----~~l--~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~ 76 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAAR-GGRVHRAP-----EPY--KALRDLKEA--RGLLAKDLSVLAL----REGLGLP 76 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEE-TTEEEECS-----SHH--HHHTTCSSB--CSTTHHHHHHHHH----HTTCCCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEc-CCEEEEeh-----hhH--HHHHHHHcC--CCEEEeccHHHHH----HcCCCCC
Confidence 458999999877 7889999999996 57888775 122 578899998 8899999999999 4899887
Q ss_pred Cccchhhcc
Q psy5654 215 NVFDTQLLF 223 (224)
Q Consensus 215 nvFDTqLAa 223 (224)
.+||||+|+
T Consensus 77 ~~fDT~laA 85 (540)
T 4dfk_A 77 PGDDPMLLA 85 (540)
T ss_dssp BCCCHHHHH
T ss_pred cceeHHHHH
Confidence 779999986
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=96.64 E-value=0.00054 Score=68.71 Aligned_cols=74 Identities=19% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCeEEEEEeeeCCCccceEEEEEEEeeCCeEEEEeCCCCccccccchhHhhhcCCCceEEEEecHHHHHHHHHhcCCccC
Q psy5654 135 NELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLR 214 (224)
Q Consensus 135 ~~~Ia~D~E~~~l~~~g~L~lIQIat~~g~a~lIDi~al~~l~~~~~Lr~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L~ 214 (224)
.+.+++|+|+.+ ++.+++| ++++..+++++|+++ . + ..|++||+++.+ |+|+|+++|. .+||.+.
T Consensus 304 ~~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~--~----~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~ 368 (832)
T 1bgx_T 304 GAFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P--Y----KALRDLKEARGL-----LAKDLSVLAL-REGLGLP 368 (832)
T ss_dssp TCCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H--H----HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCC
T ss_pred CceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C--H----HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccC
Confidence 456899998766 4556773 336666788888866 2 1 369999999987 9999999996 5999998
Q ss_pred Cccchhhcc
Q psy5654 215 NVFDTQLLF 223 (224)
Q Consensus 215 nvFDTqLAa 223 (224)
.+||||+|+
T Consensus 369 ~~~Dt~laa 377 (832)
T 1bgx_T 369 PGDDPMLLA 377 (832)
T ss_dssp BCCCHHHHH
T ss_pred cccCHHHHH
Confidence 569999986
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.20 E-value=0.012 Score=49.25 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=58.7
Q ss_pred ecCHHHHHHHHHHHccCCeEEEEEeeeCC-CccceEEEEEEEee----CCeE-----E--EEeCC---CCc---------
Q psy5654 119 ITNIKECSSVVEELMRNELVTFDCEGINP-GIKGQITLFSLGLL----SGQV-----Y--IFDLV---TCP--------- 174 (224)
Q Consensus 119 Idt~eeLa~lie~L~~~~~Ia~D~E~~~l-~~~g~L~lIQIat~----~g~a-----~--lIDi~---al~--------- 174 (224)
+++.+.+..+...+.....+.+|+|+.++ +...+++.+++... +|.. | ++.+. ..+
T Consensus 21 ~~~~~~~~~l~~~l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GI 100 (235)
T 3v9w_A 21 MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI 100 (235)
T ss_dssp --------CHHHHTTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCC
T ss_pred ccccccccCchhcccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCC
Confidence 44555666777778777889999999876 55566665555531 3332 2 23321 000
Q ss_pred --c-ccc-----c---chhHhhhcC-------CCceEEEEecHHHHHHHHH---hcCCcc-----CCccchhhcc
Q psy5654 175 --E-VVG-----T---GGLSKLLES-------ENVIKVIHDCRNDSILLYE---QFGITL-----RNVFDTQLLF 223 (224)
Q Consensus 175 --~-l~~-----~---~~Lr~lLed-------~~I~KV~Hd~K~Dl~lL~~---~~GI~L-----~nvFDTqLAa 223 (224)
+ .+. . ..|.+++++ +....|+||+++|+.+|.+ ++|+.. ...+||+.++
T Consensus 101 t~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la 175 (235)
T 3v9w_A 101 DPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALA 175 (235)
T ss_dssp CTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHH
T ss_pred CHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHH
Confidence 0 100 0 234555542 4678899999999998854 358753 2368998753
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=78.47 E-value=4.3 Score=32.30 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=48.3
Q ss_pred cCCeEEEEEeeeCC-CccceEEEEEEEe-eCCeE-----EEEeCCC-Ccc-----------ccc------c--chhHhhh
Q psy5654 134 RNELVTFDCEGINP-GIKGQITLFSLGL-LSGQV-----YIFDLVT-CPE-----------VVG------T--GGLSKLL 186 (224)
Q Consensus 134 ~~~~Ia~D~E~~~l-~~~g~L~lIQIat-~~g~a-----~lIDi~a-l~~-----------l~~------~--~~Lr~lL 186 (224)
....+.+|+|+.++ +..++++-+++.. .+++. .+|.+.. .+. .+. + ..|..++
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~l 90 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFL 90 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHHS
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHHH
Confidence 35789999998876 4455655544443 34442 2333221 110 000 0 2355566
Q ss_pred cCCCceEEEEecHHHHHHHHH---hcCCcc--CCccchhh
Q psy5654 187 ESENVIKVIHDCRNDSILLYE---QFGITL--RNVFDTQL 221 (224)
Q Consensus 187 ed~~I~KV~Hd~K~Dl~lL~~---~~GI~L--~nvFDTqL 221 (224)
.+ ...|+||+.+|+..|.+ ++|+.. ...+||+.
T Consensus 91 ~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~ 128 (186)
T 2p1j_A 91 ED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLA 128 (186)
T ss_dssp SS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
T ss_pred CC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHH
Confidence 64 36799999999998864 356654 34578864
No 14
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=66.33 E-value=3.1 Score=25.86 Aligned_cols=24 Identities=50% Similarity=0.793 Sum_probs=19.7
Q ss_pred cCCCCcccccccccccccccceeccCCCcccccc
Q psy5654 22 TNSSSPEQANGKVLKNNAINLTQIPLSPPESKAN 55 (224)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (224)
--+|++|+-.|||-. |.||..||.
T Consensus 14 R~~s~~E~~~GkvAR----------~qpp~tka~ 37 (40)
T 2kt5_B 14 RPSCSPERHGGKVAR----------LQPPPTKAQ 37 (40)
T ss_dssp CCCCCCCCCCCCSCC----------CCCCCCCCS
T ss_pred CcCCCcCCCCCceee----------ecCCCcCCC
Confidence 458899999999987 778888874
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=60.08 E-value=11 Score=30.74 Aligned_cols=32 Identities=31% Similarity=0.273 Sum_probs=22.5
Q ss_pred CceEEEEecHHHHHHHHH---hcCCcc-----CCccchhh
Q psy5654 190 NVIKVIHDCRNDSILLYE---QFGITL-----RNVFDTQL 221 (224)
Q Consensus 190 ~I~KV~Hd~K~Dl~lL~~---~~GI~L-----~nvFDTqL 221 (224)
....|+||+.+|+..|.+ ++|+.. ...+||+.
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~ 165 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTAT 165 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHH
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHH
Confidence 456799999999988864 457651 23578864
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=55.45 E-value=17 Score=30.37 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=26.8
Q ss_pred hhHhhhcC--CCceEEEEec-HHHHHHHHH---hcCCcc--C--Cccchhh
Q psy5654 181 GLSKLLES--ENVIKVIHDC-RNDSILLYE---QFGITL--R--NVFDTQL 221 (224)
Q Consensus 181 ~Lr~lLed--~~I~KV~Hd~-K~Dl~lL~~---~~GI~L--~--nvFDTqL 221 (224)
.|..++.+ +...-|+||+ .+|+..|.+ ++|+.. . ..+||+.
T Consensus 107 ~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~ 157 (242)
T 3mxm_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA 157 (242)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred HHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHH
Confidence 34456665 1246799996 999988864 467764 2 2478864
No 17
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=46.00 E-value=38 Score=26.68 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=24.7
Q ss_pred hhHhhhcCCCceEEEEecHHHHHHHHHhcCCccCCccchhh
Q psy5654 181 GLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221 (224)
Q Consensus 181 ~Lr~lLed~~I~KV~Hd~K~Dl~lL~~~~GI~L~nvFDTqL 221 (224)
.|..++.+ ...|+|++.+|+..|.+.+ .-..++||+.
T Consensus 76 ~~~~~l~~--~~lV~hn~~fD~~~L~~~~--~~~~~idt~~ 112 (189)
T 1wlj_A 76 EILQLLKG--KLVVGHDLKHDFQALKEDM--SGYTIYDTST 112 (189)
T ss_dssp HHHHHHTT--SEEEESSHHHHHHHTTCCC--TTCEEEEGGG
T ss_pred HHHHHHCC--CEEEECCcHHHHHHHHHhC--CCCceechHh
Confidence 45567753 4679999999999985322 1123578864
No 18
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=35.26 E-value=96 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=19.4
Q ss_pred hhHhhhcCC----CceEEEEecHHHHHHHHH
Q psy5654 181 GLSKLLESE----NVIKVIHDCRNDSILLYE 207 (224)
Q Consensus 181 ~Lr~lLed~----~I~KV~Hd~K~Dl~lL~~ 207 (224)
.|..++.+- ....|+|++.+|...|.+
T Consensus 87 ~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~ 117 (180)
T 2igi_A 87 ATLEFLKQWVPAGKSPICGNSIGQDRRFLFK 117 (180)
T ss_dssp HHHHHHTTTSCTTTSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEecCHHHHHHHHHH
Confidence 344566541 356799999999999864
No 19
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.70 E-value=20 Score=23.07 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=11.4
Q ss_pred ccchHHHHHHHHHH
Q psy5654 67 QNQTFKQRFNSLVL 80 (224)
Q Consensus 67 ~~~~~~q~~~~~~~ 80 (224)
.++.|||||..|+-
T Consensus 31 sq~KlKqRit~lE~ 44 (46)
T 3swy_A 31 TQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 36789999998874
No 20
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=24.53 E-value=1.8e+02 Score=22.53 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=25.8
Q ss_pred hhHhhhcCCCceEEEEecHHHHHHHHH---hcCCcc------CCccchh
Q psy5654 181 GLSKLLESENVIKVIHDCRNDSILLYE---QFGITL------RNVFDTQ 220 (224)
Q Consensus 181 ~Lr~lLed~~I~KV~Hd~K~Dl~lL~~---~~GI~L------~nvFDTq 220 (224)
.|..++.+. .-|+||+.+|...|.+ ++|+.. ...+||+
T Consensus 88 ~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~ 134 (194)
T 2gui_A 88 EFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSL 134 (194)
T ss_dssp HHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHH
T ss_pred HHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHH
Confidence 355566543 4689999999988864 357662 2457875
No 21
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.32 E-value=34 Score=24.15 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHHH
Q psy5654 67 QNQTFKQRFNSLVLKT 82 (224)
Q Consensus 67 ~~~~~~q~~~~~~~~~ 82 (224)
.++.|||||..|+-++
T Consensus 33 sQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 33 MQQKLKQRLTKVEKFL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3688999999998543
No 22
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=20.90 E-value=1e+02 Score=26.98 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=26.8
Q ss_pred hHhhhcC--CCceEEEEe-cHHHHHHHHH---hcCCccC--C--ccchhh
Q psy5654 182 LSKLLES--ENVIKVIHD-CRNDSILLYE---QFGITLR--N--VFDTQL 221 (224)
Q Consensus 182 Lr~lLed--~~I~KV~Hd-~K~Dl~lL~~---~~GI~L~--n--vFDTqL 221 (224)
|..++.+ +...-|+|| +.+|...|.+ ++|+... . .+||+.
T Consensus 108 l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~ 157 (314)
T 3u3y_B 108 LRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA 157 (314)
T ss_dssp HHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred HHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHH
Confidence 4556665 225679999 8999988864 4677652 2 468764
No 23
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.64 E-value=35 Score=23.81 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.8
Q ss_pred ccchHHHHHHHHHHHHHHhhcccCC
Q psy5654 67 QNQTFKQRFNSLVLKTIAQNTEKDQ 91 (224)
Q Consensus 67 ~~~~~~q~~~~~~~~~l~~n~~~~~ 91 (224)
-||.+|+|+..|..|+=-+-.||++
T Consensus 27 sNq~mkeR~eeL~~wqekQkeEref 51 (70)
T 3brv_B 27 SNQILRERCEELLHFQASQREEKEF 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4899999999999887666555555
Done!