Your job contains 1 sequence.
>psy5654
MHSNVFNIQSNTVKLVDNITHTNSSSPEQANGKVLKNNAINLTQIPLSPPESKANLTHSS
PPASLAQNQTFKQRFNSLVLKTIAQNTEKDQRYPSSNGGYVANNSDNFKTKVLQNTKVIT
NIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTG
GLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQLLFL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5654
(224 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0000562 - symbol:egl "egalitarian" species:7227 "D... 345 3.3e-30 1
GENEDB_PFALCIPARUM|MAL8P1.35 - symbol:MAL8P1.35 "exonucle... 195 6.8e-15 1
UNIPROTKB|Q8IB75 - symbol:MAL8P1.35 "Exonuclease, putativ... 195 6.8e-15 1
DICTYBASE|DDB_G0282387 - symbol:DDB_G0282387 "3'-5' exonu... 182 1.6e-13 1
WB|WBGene00015680 - symbol:egal-1 species:6239 "Caenorhab... 173 3.5e-12 1
UNIPROTKB|Q17902 - symbol:egal-1 "Protein EGAL-1, isoform... 173 3.5e-12 1
GENEDB_PFALCIPARUM|PFB0215c - symbol:PFB0215c "3'-5' exon... 170 4.0e-12 1
UNIPROTKB|O96144 - symbol:PFB0215c "3'-5' exonuclease, pu... 170 4.0e-12 1
TAIR|locus:2043555 - symbol:AT2G25910 species:3702 "Arabi... 164 1.1e-11 1
MGI|MGI:3045306 - symbol:Exd1 "exonuclease 3'-5' domain c... 140 1.5e-07 2
UNIPROTKB|F1SSV1 - symbol:LOC100621282 "Uncharacterized p... 140 4.2e-07 1
RGD|1561009 - symbol:Exd1 "exonuclease 3'-5' domain conta... 139 5.4e-07 1
UNIPROTKB|E2RJB4 - symbol:EXD1 "Uncharacterized protein" ... 139 5.5e-07 1
UNIPROTKB|E1BDE2 - symbol:EXD1 "Uncharacterized protein" ... 139 5.5e-07 1
UNIPROTKB|Q8NHP7 - symbol:EXD1 "Exonuclease 3'-5' domain-... 136 1.1e-06 1
UNIPROTKB|B7Z839 - symbol:EXD1 "cDNA FLJ55584" species:96... 136 1.3e-06 1
ZFIN|ZDB-GENE-060825-267 - symbol:zgc:154068 "zgc:154068"... 123 2.5e-05 1
UNIPROTKB|I3LGH8 - symbol:I3LGH8 "Uncharacterized protein... 105 0.00074 1
>FB|FBgn0000562 [details] [associations]
symbol:egl "egalitarian" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IDA;NAS;IMP;TAS]
[GO:0007312 "oocyte nucleus migration involved in oocyte
dorsal/ventral axis specification" evidence=TAS] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP;NAS;TAS]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=TAS] [GO:0016325 "oocyte microtubule cytoskeleton
organization" evidence=TAS] [GO:0008298 "intracellular mRNA
localization" evidence=IMP;TAS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IMP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0007294
GO:GO:0003729 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008298
GO:GO:0008408 GO:GO:0051028 GO:GO:0007312 GO:GO:0016325
UCSC:CG4051-RB FlyBase:FBgn0000562 EMBL:BT009999
ProteinModelPortal:Q7YU43 STRING:Q7YU43 PRIDE:Q7YU43
InParanoid:Q7YU43 ArrayExpress:Q7YU43 Bgee:Q7YU43 Uniprot:Q7YU43
Length = 1004
Score = 345 (126.5 bits), Expect = 3.3e-30, P = 3.3e-30
Identities = 84/214 (39%), Positives = 121/214 (56%)
Query: 19 ITHTNSSSPEQANGKVLKNNAINLTQIPLSPPESKAN--LTHSSPPASLAQNQTFKQRFN 76
+ N + ++ N V++ A NL + S + H+SP S+A N + Q
Sbjct: 433 LNSVNQTLKQRINTLVIRTLAENLEKDKQSLANQQGGPISPHASPVHSIA-NSSSNQNAG 491
Query: 77 SLVLKTIAQNTEKDQRYPSSNGGYVANNS----DNFKTKVLQNTKVITNIKECSSVVEEL 132
S A N + +N + ++S D +K KVLQNT VI N+K+ V + +
Sbjct: 492 SA-----ANNANSNSNANPNNANHSPSHSYFVGDTWKIKVLQNTTVIANVKQSVFVTDII 546
Query: 133 MR----NE--LVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLL 186
++ NE +V+ DCEGIN G+KG+ITL +G G+ ++FD+ +CP +V GGL +L
Sbjct: 547 LKYAAKNESIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVL 606
Query: 187 ESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQ 220
E + VIKVIHDCRND+ LY QFGI LRNVFDTQ
Sbjct: 607 EHDQVIKVIHDCRNDAANLYLQFGILLRNVFDTQ 640
>GENEDB_PFALCIPARUM|MAL8P1.35 [details] [associations]
symbol:MAL8P1.35 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 EMBL:AL844507
RefSeq:XP_001349283.1 ProteinModelPortal:Q8IB75
EnsemblProtists:MAL8P1.35:mRNA GeneID:2655376 KEGG:pfa:MAL8P1.35
EuPathDB:PlasmoDB:PF3D7_0824100 HOGENOM:HOG000282618
ProtClustDB:CLSZ2433017 Uniprot:Q8IB75
Length = 406
Score = 195 (73.7 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 51/138 (36%), Positives = 76/138 (55%)
Query: 100 YVANNSDNFKTKVLQNT-------KVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQ 152
Y NN+D K +L+NT K+I N KEC EE+ R+E++ D EG N G G+
Sbjct: 57 YDRNNNDK-KCIILRNTESVSKDIKIIENEKECEEAAEEINRSEIIAIDFEGTNLGRYGK 115
Query: 153 ITLFSLGL----LSGQ-------VYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRND 201
+ L + + ++ Q YIFDL+ V+ + K++E++ +K+IHDCR D
Sbjct: 116 VCLMQVYVEKKNMNEQSDNILQKYYIFDLLKT-SVIKSA--QKIIENKKTLKLIHDCRED 172
Query: 202 SILLYEQFGITLRNVFDT 219
S LY Q G+ L NV+DT
Sbjct: 173 SSALYNQLGMKLENVYDT 190
>UNIPROTKB|Q8IB75 [details] [associations]
symbol:MAL8P1.35 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:AL844507 RefSeq:XP_001349283.1
ProteinModelPortal:Q8IB75 EnsemblProtists:MAL8P1.35:mRNA
GeneID:2655376 KEGG:pfa:MAL8P1.35 EuPathDB:PlasmoDB:PF3D7_0824100
HOGENOM:HOG000282618 ProtClustDB:CLSZ2433017 Uniprot:Q8IB75
Length = 406
Score = 195 (73.7 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 51/138 (36%), Positives = 76/138 (55%)
Query: 100 YVANNSDNFKTKVLQNT-------KVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQ 152
Y NN+D K +L+NT K+I N KEC EE+ R+E++ D EG N G G+
Sbjct: 57 YDRNNNDK-KCIILRNTESVSKDIKIIENEKECEEAAEEINRSEIIAIDFEGTNLGRYGK 115
Query: 153 ITLFSLGL----LSGQ-------VYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRND 201
+ L + + ++ Q YIFDL+ V+ + K++E++ +K+IHDCR D
Sbjct: 116 VCLMQVYVEKKNMNEQSDNILQKYYIFDLLKT-SVIKSA--QKIIENKKTLKLIHDCRED 172
Query: 202 SILLYEQFGITLRNVFDT 219
S LY Q G+ L NV+DT
Sbjct: 173 SSALYNQLGMKLENVYDT 190
>DICTYBASE|DDB_G0282387 [details] [associations]
symbol:DDB_G0282387 "3'-5' exonuclease
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
dictyBase:DDB_G0282387 EMBL:AAFI02000047 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 eggNOG:NOG263976
RefSeq:XP_640019.1 ProteinModelPortal:Q54SM0
EnsemblProtists:DDB0238342 GeneID:8623543 KEGG:ddi:DDB_G0282387
OMA:CRRDSEI Uniprot:Q54SM0
Length = 390
Score = 182 (69.1 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/109 (31%), Positives = 65/109 (59%)
Query: 115 NTKVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCP 174
N ++ + + + + E+ + +L+ D E I G KG I+L + +G++Y+FD++
Sbjct: 164 NIYMVDCLSKMNYAIHEIKKEKLIGLDIEAIEMGKKGDISLVQISTPNGRIYLFDIIKMG 223
Query: 175 EVVGTG--GLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
V GL ++LES ++KV+HDCR DS +L+ ++ + L +V+D Q+
Sbjct: 224 ANVTPFKYGLKEVLESVKILKVVHDCRRDSEILFHRYQVALAHVYDVQI 272
>WB|WBGene00015680 [details] [associations]
symbol:egal-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0002009 "morphogenesis of
an epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0002009 GO:GO:0018996 GO:GO:0040011
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:FO080389 PIR:T29937 RefSeq:NP_001021323.1
ProteinModelPortal:Q17902 DIP:DIP-26632N IntAct:Q17902
MINT:MINT-1059848 STRING:Q17902 PaxDb:Q17902 PRIDE:Q17902
EnsemblMetazoa:C10G6.1a.1 EnsemblMetazoa:C10G6.1a.2
EnsemblMetazoa:C10G6.1a.3 GeneID:177352 KEGG:cel:CELE_C10G6.1
UCSC:C10G6.1b.1 CTD:177352 WormBase:C10G6.1a eggNOG:NOG282728
GeneTree:ENSGT00520000059274 HOGENOM:HOG000021733 InParanoid:Q17902
OMA:HDKFGKP NextBio:896406 ArrayExpress:Q17902 Uniprot:Q17902
Length = 574
Score = 173 (66.0 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 48/158 (30%), Positives = 80/158 (50%)
Query: 74 RFNSLVLKTIAQNTEKDQRYPSSNGGYVANNSDNFKTKVLQNTKV--ITNIKECSSVVEE 131
R N + L + +D S+ G NN+ F T++ + +K ++
Sbjct: 248 RSNKVSL--VKNRLNEDGSENGSDEGEETNNNGMFPLDQSALTRIHFVKALKPAQDLISR 305
Query: 132 L------MRNELVTFDCEGINPGIKGQITLFSLGLLS--GQVYIFDLVTCPEVVGTGGLS 183
L M ++V D + + G+ G+I L SLG+++ Q+ IFDL + ++ G
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFL-SLGVIATTSQIGIFDLASSDVIILESGFK 364
Query: 184 KLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+LESE V+KVIHD R + LL ++ + +RNVFDTQ+
Sbjct: 365 GILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQV 402
>UNIPROTKB|Q17902 [details] [associations]
symbol:egal-1 "Protein EGAL-1, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0002009 GO:GO:0018996 GO:GO:0040011
GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
EMBL:FO080389 PIR:T29937 RefSeq:NP_001021323.1
ProteinModelPortal:Q17902 DIP:DIP-26632N IntAct:Q17902
MINT:MINT-1059848 STRING:Q17902 PaxDb:Q17902 PRIDE:Q17902
EnsemblMetazoa:C10G6.1a.1 EnsemblMetazoa:C10G6.1a.2
EnsemblMetazoa:C10G6.1a.3 GeneID:177352 KEGG:cel:CELE_C10G6.1
UCSC:C10G6.1b.1 CTD:177352 WormBase:C10G6.1a eggNOG:NOG282728
GeneTree:ENSGT00520000059274 HOGENOM:HOG000021733 InParanoid:Q17902
OMA:HDKFGKP NextBio:896406 ArrayExpress:Q17902 Uniprot:Q17902
Length = 574
Score = 173 (66.0 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 48/158 (30%), Positives = 80/158 (50%)
Query: 74 RFNSLVLKTIAQNTEKDQRYPSSNGGYVANNSDNFKTKVLQNTKV--ITNIKECSSVVEE 131
R N + L + +D S+ G NN+ F T++ + +K ++
Sbjct: 248 RSNKVSL--VKNRLNEDGSENGSDEGEETNNNGMFPLDQSALTRIHFVKALKPAQDLISR 305
Query: 132 L------MRNELVTFDCEGINPGIKGQITLFSLGLLS--GQVYIFDLVTCPEVVGTGGLS 183
L M ++V D + + G+ G+I L SLG+++ Q+ IFDL + ++ G
Sbjct: 306 LWQDINNMEKKVVGLDLKTVTVGVDGEIFL-SLGVIATTSQIGIFDLASSDVIILESGFK 364
Query: 184 KLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+LESE V+KVIHD R + LL ++ + +RNVFDTQ+
Sbjct: 365 GILESEKVVKVIHDARRVASLLAHKYAVHMRNVFDTQV 402
>GENEDB_PFALCIPARUM|PFB0215c [details] [associations]
symbol:PFB0215c "3'-5' exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0008408 EMBL:AE001362 InterPro:IPR022967 SMART:SM00316
PIR:C71620 RefSeq:XP_001349559.1 ProteinModelPortal:O96144
EnsemblProtists:PFB0215c:mRNA GeneID:812641 KEGG:pfa:PFB0215c
EuPathDB:PlasmoDB:PF3D7_0204800 HOGENOM:HOG000284244
ProtClustDB:CLSZ2432980 Uniprot:O96144
Length = 416
Score = 170 (64.9 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 41/129 (31%), Positives = 69/129 (53%)
Query: 106 DNFKTKVLQNTKVITNIKECSSVVEE-------LMRN---ELVTFDCEGINPGIKGQITL 155
DN K +N K I++ K C V+E L+++ +++ D EG G G +++
Sbjct: 37 DNIDKK--RNIKYISDCKSCKECVDEIKNGNYNLLKDFNMKMIGLDIEGYKIGKYGIVSI 94
Query: 156 FSLGLLSGQVYIFDLVTCPEV-VGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLR 214
+ +YIFD+ C V + + +LE +++IKV HDCR D +LY Q+ I L+
Sbjct: 95 IQI--CYEDIYIFDIYKCDNVYLFINYIKDILECDDIIKVTHDCREDCSILYNQYNIHLK 152
Query: 215 NVFDTQLLF 223
N+ DTQ+ +
Sbjct: 153 NILDTQVAY 161
>UNIPROTKB|O96144 [details] [associations]
symbol:PFB0215c "3'-5' exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612
SMART:SM00474 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008408 EMBL:AE001362
InterPro:IPR022967 SMART:SM00316 PIR:C71620 RefSeq:XP_001349559.1
ProteinModelPortal:O96144 EnsemblProtists:PFB0215c:mRNA
GeneID:812641 KEGG:pfa:PFB0215c EuPathDB:PlasmoDB:PF3D7_0204800
HOGENOM:HOG000284244 ProtClustDB:CLSZ2432980 Uniprot:O96144
Length = 416
Score = 170 (64.9 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 41/129 (31%), Positives = 69/129 (53%)
Query: 106 DNFKTKVLQNTKVITNIKECSSVVEE-------LMRN---ELVTFDCEGINPGIKGQITL 155
DN K +N K I++ K C V+E L+++ +++ D EG G G +++
Sbjct: 37 DNIDKK--RNIKYISDCKSCKECVDEIKNGNYNLLKDFNMKMIGLDIEGYKIGKYGIVSI 94
Query: 156 FSLGLLSGQVYIFDLVTCPEV-VGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLR 214
+ +YIFD+ C V + + +LE +++IKV HDCR D +LY Q+ I L+
Sbjct: 95 IQI--CYEDIYIFDIYKCDNVYLFINYIKDILECDDIIKVTHDCREDCSILYNQYNIHLK 152
Query: 215 NVFDTQLLF 223
N+ DTQ+ +
Sbjct: 153 NILDTQVAY 161
>TAIR|locus:2043555 [details] [associations]
symbol:AT2G25910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISS]
[GO:0006623 "protein targeting to vacuole" evidence=RCA]
[GO:0016192 "vesicle-mediated transport" evidence=RCA]
InterPro:IPR002562 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012337 Pfam:PF00013 Pfam:PF01612 PROSITE:PS50084
SMART:SM00322 SMART:SM00474 EMBL:CP002685 GO:GO:0003723
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 IPI:IPI00656778
RefSeq:NP_001031418.1 UniGene:At.13054 ProteinModelPortal:F4ITJ6
SMR:F4ITJ6 PRIDE:F4ITJ6 EnsemblPlants:AT2G25910.2 GeneID:817132
KEGG:ath:AT2G25910 OMA:CIMQIAF PhylomeDB:F4ITJ6 Uniprot:F4ITJ6
Length = 342
Score = 164 (62.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 137 LVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIH 196
++ FDCEG++ G++ + + S +Y+ D++ EV+ LES + KVIH
Sbjct: 57 VIGFDCEGVDLCRHGKLCIMQIAF-SNAIYLVDVIEGGEVI-MKACKPALESNYITKVIH 114
Query: 197 DCRNDSILLYEQFGITLRNVFDTQLLF 223
DC+ DS LY QFGI L NV DTQ+ +
Sbjct: 115 DCKRDSEALYFQFGIRLHNVVDTQIAY 141
>MGI|MGI:3045306 [details] [associations]
symbol:Exd1 "exonuclease 3'-5' domain containing 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 MGI:MGI:3045306
GO:GO:0003676 GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0008408 eggNOG:NOG263976 OrthoDB:EOG4HMJ94 CTD:161829
EMBL:AK030132 EMBL:AL844536 EMBL:AL844862 EMBL:BC092241
IPI:IPI00228803 RefSeq:NP_766445.1 UniGene:Mm.212773
ProteinModelPortal:Q8CDF7 PhosphoSite:Q8CDF7 PRIDE:Q8CDF7
Ensembl:ENSMUST00000060009 Ensembl:ENSMUST00000171024 GeneID:241624
KEGG:mmu:241624 UCSC:uc008ltu.1 GeneTree:ENSGT00390000003581
HOGENOM:HOG000112411 InParanoid:Q8CDF7 OMA:FQKQRRE NextBio:385085
Bgee:Q8CDF7 Genevestigator:Q8CDF7 Uniprot:Q8CDF7
Length = 570
Score = 140 (54.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENV 191
+ + +++ EG N G++ + S +VY+FD+ GL +LE + +
Sbjct: 152 IKKQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDIFLLGSRAFNNGLQMILEDKRI 210
Query: 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 211 LKVIHDCRWLSDCLSHQYGIMLNNVFDTQV 240
Score = 40 (19.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 24 SSSPEQANGKVLKNNAINLTQIPLSP-PE 51
S + E+A + +KN +N+ + P SP PE
Sbjct: 86 SINTERAGMEKVKNEDVNVCE-PASPAPE 113
>UNIPROTKB|F1SSV1 [details] [associations]
symbol:LOC100621282 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GeneTree:ENSGT00390000003581
OMA:FQKQRRE EMBL:FP015925 EMBL:CU633507 Ensembl:ENSSSCT00000005251
Uniprot:F1SSV1
Length = 568
Score = 140 (54.3 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 32/88 (36%), Positives = 49/88 (55%)
Query: 134 RNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIK 193
+ +++ EG N G++ + S +VY+FD++ GL +LE + ++K
Sbjct: 156 KQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDILLLGSRAFNNGLQMVLEDKRILK 214
Query: 194 VIHDCRNDSILLYEQFGITLRNVFDTQL 221
VIHDCR S L Q+GI L NVFDTQ+
Sbjct: 215 VIHDCRWLSDCLSHQYGILLNNVFDTQV 242
>RGD|1561009 [details] [associations]
symbol:Exd1 "exonuclease 3'-5' domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
InterPro:IPR002562 InterPro:IPR012337 Pfam:PF01612 SMART:SM00474
RGD:1561009 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CH473949 OrthoDB:EOG4HMJ94 CTD:161829
GeneTree:ENSGT00390000003581 OMA:FQKQRRE IPI:IPI00390945
RefSeq:NP_001101231.1 UniGene:Rn.218587 Ensembl:ENSRNOT00000038365
GeneID:311334 KEGG:rno:311334 UCSC:RGD:1561009 NextBio:663357
Uniprot:D4AD21
Length = 562
Score = 139 (54.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENV 191
+ + +++ EG N G++ + S +VY+FD+ GL +LE + +
Sbjct: 152 IKKQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDIFLLGSRAFNNGLQMILEDKRI 210
Query: 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 211 LKVIHDCRWLSDCLSHQYGIMLSNVFDTQV 240
>UNIPROTKB|E2RJB4 [details] [associations]
symbol:EXD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408 CTD:161829
GeneTree:ENSGT00390000003581 OMA:FQKQRRE EMBL:AAEX03016071
RefSeq:XP_535437.2 Ensembl:ENSCAFT00000015106 GeneID:478263
KEGG:cfa:478263 Uniprot:E2RJB4
Length = 569
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENV 191
+ + +++ EG N G++ + S +VY+FD+ GL +LE + +
Sbjct: 151 IKKQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDIFLLGSRAFNNGLQMVLEDKRI 209
Query: 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 210 LKVIHDCRWLSDCLSHQYGILLNNVFDTQV 239
>UNIPROTKB|E1BDE2 [details] [associations]
symbol:EXD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GeneTree:ENSGT00390000003581
OMA:FQKQRRE EMBL:DAAA02028559 IPI:IPI00702155
ProteinModelPortal:E1BDE2 Ensembl:ENSBTAT00000011011 Uniprot:E1BDE2
Length = 573
Score = 139 (54.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 132 LMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENV 191
+ + +++ EG N G++ + S +VY+FD+ GL +LE + +
Sbjct: 155 IKKQSVLSVAAEGANVCRHGKLCWLQVATNS-RVYLFDIFLLGSRAFNNGLQMVLEDKRI 213
Query: 192 IKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 214 LKVIHDCRWLSDCLSHQYGILLNNVFDTQV 243
>UNIPROTKB|Q8NHP7 [details] [associations]
symbol:EXD1 "Exonuclease 3'-5' domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 SMART:SM00474 GO:GO:0003676
GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408
eggNOG:NOG263976 OrthoDB:EOG4HMJ94 EMBL:AK123414 EMBL:AK292524
EMBL:BC030628 IPI:IPI00446611 IPI:IPI01011120 RefSeq:NP_689809.2
UniGene:Hs.307999 ProteinModelPortal:Q8NHP7 SMR:Q8NHP7
PhosphoSite:Q8NHP7 DMDM:189037934 PaxDb:Q8NHP7 PRIDE:Q8NHP7
DNASU:161829 Ensembl:ENST00000314992 GeneID:161829 KEGG:hsa:161829
UCSC:uc001znj.3 UCSC:uc001znk.3 CTD:161829 GeneCards:GC15M041474
HGNC:HGNC:28507 HPA:HPA039388 neXtProt:NX_Q8NHP7
PharmGKB:PA164719420 InParanoid:Q8NHP7 PhylomeDB:Q8NHP7
GenomeRNAi:161829 NextBio:88118 ArrayExpress:Q8NHP7 Bgee:Q8NHP7
CleanEx:HS_EXDL1 Genevestigator:Q8NHP7 Uniprot:Q8NHP7
Length = 514
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 127 SVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLL 186
+ + + + +++ EG N G++ + + +VY+FD+ GL +L
Sbjct: 90 AAILHIKKQNVLSVAAEGANVCRHGKLCWLQVAT-NCRVYLFDIFLLGSRAFHNGLQMIL 148
Query: 187 ESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
E + ++KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 149 EDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQV 183
>UNIPROTKB|B7Z839 [details] [associations]
symbol:EXD1 "cDNA FLJ55584" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 SMART:SM00474 GO:GO:0003676 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 UniGene:Hs.307999 HGNC:HGNC:28507
HOGENOM:HOG000112411 OMA:FQKQRRE EMBL:AC012652 EMBL:AC022408
EMBL:AK302864 IPI:IPI00169284 SMR:B7Z839 Ensembl:ENST00000458580
UCSC:uc010ucv.2 HOVERGEN:HBG106303 Uniprot:B7Z839
Length = 572
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 127 SVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLL 186
+ + + + +++ EG N G++ + + +VY+FD+ GL +L
Sbjct: 148 AAILHIKKQNVLSVAAEGANVCRHGKLCWLQVAT-NCRVYLFDIFLLGSRAFHNGLQMIL 206
Query: 187 ESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
E + ++KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 207 EDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQV 241
>ZFIN|ZDB-GENE-060825-267 [details] [associations]
symbol:zgc:154068 "zgc:154068" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] InterPro:IPR002562
InterPro:IPR012337 Pfam:PF01612 ZFIN:ZDB-GENE-060825-267
GO:GO:0003676 GO:GO:0005622 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0008408 EMBL:BC122448 IPI:IPI00786714 RefSeq:NP_001038930.1
UniGene:Dr.84540 ProteinModelPortal:Q0P3U3 GeneID:751755
KEGG:dre:751755 eggNOG:NOG263976 OrthoDB:EOG4HMJ94 NextBio:20917894
Uniprot:Q0P3U3
Length = 378
Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 148 GIKGQITLFSLGLLSGQV-YIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLY 206
G GQ L L + + +V Y+FD++ GLS +LE+ +++KV+HDCR + L
Sbjct: 145 GQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILKVLHDCRCITRCLR 204
Query: 207 EQFGITLRNVFDTQL 221
+F + L NVFDTQ+
Sbjct: 205 TEFRVQLTNVFDTQV 219
>UNIPROTKB|I3LGH8 [details] [associations]
symbol:I3LGH8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008408 "3'-5' exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002562 InterPro:IPR012337
Pfam:PF01612 GO:GO:0003676 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 GeneTree:ENSGT00390000003581
Ensembl:ENSSSCT00000031157 OMA:HIIRIRE Uniprot:I3LGH8
Length = 198
Score = 105 (42.0 bits), Expect = 0.00074, P = 0.00074
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 185 LLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+LE + ++KVIHDCR S L Q+GI L NVFDTQ+
Sbjct: 2 VLEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQV 38
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 224 224 0.00099 112 3 11 23 0.44 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 558 (59 KB)
Total size of DFA: 151 KB (2092 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:06
No. of threads or processors used: 24
Search cpu time: 25.17u 0.09s 25.26t Elapsed: 00:00:27
Total cpu time: 25.17u 0.09s 25.26t Elapsed: 00:00:33
Start: Thu Aug 15 14:01:42 2013 End: Thu Aug 15 14:02:15 2013