RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5654
(224 letters)
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form,
hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A
2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Length = 208
Score = 63.7 bits (155), Expect = 9e-13
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 9/112 (8%)
Query: 118 VITNIKECSSVVEELMRN----ELVTFDCE---GINPGIKGQITLFSLGLLSGQVYIFDL 170
+CS + E++ ++V FD E PG + ++ + L + + Y+F +
Sbjct: 19 YSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHI 78
Query: 171 VTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQLL 222
+ GL LLE++++ K D L F + L + + +
Sbjct: 79 SSMSVF--PQGLKMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDV 128
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase,
tRNA processing, hydrolase,translation; 1.60A
{Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Length = 375
Score = 60.5 bits (147), Expect = 4e-11
Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 115 NTKVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFS-LGLL----SGQVYIFD 169
N ++IT +S+ E + + D E + T + LGL+ + + D
Sbjct: 2 NYQMITTDDALASLCEAVRAFPAIALDTEFVR-----TRTYYPQLGLIQLFDGEHLALID 56
Query: 170 LVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
+ + L +L ++ K +H D + FG + + DTQ+
Sbjct: 57 PLGITD---WSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQI 105
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase;
2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Length = 428
Score = 56.4 bits (136), Expect = 1e-09
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 12/110 (10%)
Query: 117 KVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFS-LGLL----SGQVYIFDLV 171
I+++ E + E+L+ + + E + + L+ + +I D +
Sbjct: 111 HFISSLDELVELNEKLLNCQEFAVNLEHHS-----YRSFLGLTCLMQISTRTEDFIIDTL 165
Query: 172 TCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
L++ L ++KV H +D L + FG+ + N+FDT
Sbjct: 166 ELRS--DMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 213
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance,
RNA processing, hydrolase, gene regulation; 2.10A
{Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB:
2hbk_A 2hbl_A* 2hbm_A*
Length = 410
Score = 54.1 bits (130), Expect = 6e-09
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 20/113 (17%)
Query: 118 VITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFS----LGLL----SGQVYIFD 169
+ E S++E+L + + D E S + L+ + Y+ D
Sbjct: 89 WVDTSTELESMLEDLKNTKEIAVDLE--------HHDYRSYYGIVCLMQISTRERDYLVD 140
Query: 170 -LVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
L + L+++ + +++KV H D I L G+ + +FDT
Sbjct: 141 TLKLRENL---HILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYH 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 1e-08
Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 62/230 (26%)
Query: 4 NVFNIQSNTVKLVDNITHTNSSSPEQANGKVLKNNAINLTQIPLSPPESK---ANLTHSS 60
N FN+ + +T + + + +++ + L+P E K
Sbjct: 260 NAFNLSCKIL-----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 61 P---PASLAQNQTFKQRFNSLVLKTIAQNTEKDQRYPSSNGGYVANNSDNFKTKVLQNTK 117
P P + N L IA E + DN+K + K
Sbjct: 315 PQDLPREVLTT-------NPRRLSIIA---ESIRDGL--------ATWDNWKH--VNCDK 354
Query: 118 VITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVV 177
+ T I+ + L E + L + +I P ++
Sbjct: 355 LTTIIESS---LNVLEPAEY--------------RKMFDRLSVFPPSAHI------PTIL 391
Query: 178 GTGGLSKL---LESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQLLFL 224
LS + + +V+ V++ S++ + T+ + L
Sbjct: 392 ----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELK 436
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 48.0 bits (114), Expect = 8e-07
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 20/114 (17%)
Query: 118 VITNIKECSSVVEELMRNE-LVTFDCEGINPGIKGQITLFS-LGLL-----SGQVYIFDL 170
VI + EL + + D E + L+ + + D
Sbjct: 20 VIDTLPAFRDYCSELASSHGSLAADAERAS-----GFRYGHEDWLVQFKRDGAGIGLLD- 73
Query: 171 VTCPEVVGTGG--LSKLLES-ENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
P+ + G + + + + ++HD D E G+ + +FDT++
Sbjct: 74 ---PQALAAAGADWNDFNRAVGDAVWILHDSLQDLPGFDE-LGMEPQRLFDTEI 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-06
Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 71/233 (30%)
Query: 8 IQSNTVKLVDNITHTNSSSPEQANGKVLKNNAINLTQIPLSPPESKANLTHSSPPA---- 63
I+ N ++ E K+ K + T + + T + PA
Sbjct: 1684 IRENYSAMIFETIVDGKLKTE----KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 64 SLAQNQTFKQRFN----------SL-----------VL-------------KTIAQNTEK 89
A + K + SL V+ T+ +
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 90 DQRYPSSNGGYVANN----SDNFKTKVLQNTKVITNI-KECSSVVEELMRNELVTFDCEG 144
D+ SN G +A N + +F + LQ V+ + K +V E+V ++ E
Sbjct: 1800 DE-LGRSNYGMIAINPGRVAASFSQEALQ--YVVERVGKRTGWLV------EIVNYNVEN 1850
Query: 145 INPGIKGQITLFSLGLLSGQVYIFD-LVTCPEVVGTGG--LSKLLESENVIKV 194
Q + +G + D + + + +L +S ++ +V
Sbjct: 1851 ------QQY------VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 43.1 bits (101), Expect = 4e-05
Identities = 48/255 (18%), Positives = 75/255 (29%), Gaps = 117/255 (45%)
Query: 14 KLVDNITHTNSSSPEQANGKV---LKNNAINLTQIPLSPPESKANLTHSSPPASL----- 65
++ D + TNS P +V L N NL S PP SL
Sbjct: 348 QVQDYVNKTNSHLPA--GKQVEISLVN--------------GAKNLVVSGPPQSLYGLNL 391
Query: 66 ---------AQNQT---FKQR--------------FNSLVLKTIAQNTEKDQRYPSSNGG 99
+Q+ F +R F+S +L + KD
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--------- 442
Query: 100 YVANNSDNFKTKVLQ----NTKVITNIKECS-SVVEELMRNELVTFDCEGINPGIKGQIT 154
+ N+ +F K +Q +T ++++ S S+ E + DC
Sbjct: 443 -LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI-------VDC------------ 482
Query: 155 LFSLGLLSGQVY-----------IFDLVTCPEVVGTGGLSKL--LESENV----IKVIH- 196
++ V I D G GG S L L N ++VI
Sbjct: 483 -----IIRLPVKWETTTQFKATHILDF-------GPGGASGLGVLTHRNKDGTGVRVIVA 530
Query: 197 ---DCRNDSILLYEQ 208
D D ++Q
Sbjct: 531 GTLDINPDDDYGFKQ 545
Score = 33.1 bits (75), Expect = 0.083
Identities = 28/225 (12%), Positives = 56/225 (24%), Gaps = 90/225 (40%)
Query: 38 NAINLTQIPLSPPESKANLTHSSP-PASLAQNQTFKQRFNSLVLKTIAQNTEKDQRYPSS 96
+A + PL+ S +L H P + F + L+
Sbjct: 2 DAYSTR--PLTL--SHGSLEHVLLVPTASF--------FIASQLQ--------------- 34
Query: 97 NGGYVANNSDNFKTKVLQNTKVITNIKECSSVVE----------------------ELMR 134
+ F + + T+ E ++ E +++
Sbjct: 35 ---------EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 135 NELVTFDCE---GIN--------PGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLS 183
L F+ G + + + L+ + YI + S
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNS 143
Query: 184 KLLESENVIKVIHDCRNDSILLYEQF---GIT------LRNVFDT 219
L + + L F G T LR+++ T
Sbjct: 144 ALFRA---------VGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics,
protein structure initiative, center for eukaryot
structural genomics, CESG; 2.10A {Arabidopsis thaliana}
SCOP: c.55.3.5 PDB: 2q3s_A
Length = 206
Score = 45.4 bits (107), Expect = 4e-06
Identities = 23/130 (17%), Positives = 39/130 (30%), Gaps = 11/130 (8%)
Query: 99 GYVANNSDNFKTKVLQNTKVITNIKECSSVVEELMRN--ELVTFDCE----GINPGIKGQ 152
+ + +TK + S + E+ + N V FD K +
Sbjct: 8 KFKMTDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTK 67
Query: 153 ITLFSLGLL----SGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQ 208
+ +SL + L L + S+ V V D LL E
Sbjct: 68 TSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKD-LYRFFASKFVTFVGVQIEEDLDLLREN 126
Query: 209 FGITLRNVFD 218
G+ +RN +
Sbjct: 127 HGLVIRNAIN 136
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 42.9 bits (102), Expect = 4e-05
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 117 KVITNIKECSSVVEELMRNELVTFDCE--GINPGIKGQITLFSLGLLSGQ-VYI---FDL 170
I + + + + +L + + FD E ++ I + S + G YI D
Sbjct: 8 VTILDEETLKAWIAKLEKAPVFAFDTETDSLDN-ISANLVGLSFAIEPGVAAYIPVAHDY 66
Query: 171 VTCPEVVGT----GGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNV-FDTQL 221
+ P+ + L LLE E +KV + + D +L +GI LR + FDT L
Sbjct: 67 LDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTML 121
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis
aries} SCOP: d.108.1.1 PDB: 1b6b_A
Length = 166
Score = 34.8 bits (80), Expect = 0.008
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 119 ITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQ-VYIFDLVTCPEVV 177
+T E S LV F + + +L G ++ L
Sbjct: 45 LTLCPELSLGWFV--EGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFR 102
Query: 178 GTGGLSKLLES--------ENVIKVIHDCRNDSILLYEQFG 210
G S LL V + + C + + Y++FG
Sbjct: 103 QQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFG 143
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor
complex, bisubstrate analog, alternate conformations;
HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB:
1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Length = 207
Score = 35.0 bits (80), Expect = 0.009
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 11/101 (10%)
Query: 119 ITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQ-VYIFDLVTCPEVV 177
+T E S LV F + + +L G ++ L
Sbjct: 74 LTLCPELSLGWFV--EGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFR 131
Query: 178 GTGGLSKLLES-------ENVIKVIH-DCRNDSILLYEQFG 210
G S LL + ++ C + + Y++FG
Sbjct: 132 QQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFG 172
>1i12_A Glucosamine-phosphate N-acetyltransferase; GNAT, alpha/beta; HET:
ACO; 1.30A {Saccharomyces cerevisiae} SCOP: d.108.1.1
PDB: 1i1d_A* 1i21_A
Length = 160
Score = 34.4 bits (79), Expect = 0.011
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 126 SSVVEELMRNELVTFDCEGINPGIKGQI----TLF----SLGLLSGQVYIFDLVTCPEVV 177
++V + +++ ++ I + + + L +I D+ +
Sbjct: 49 ATVWNDNEDKKIMQYNPMVIVDKRTETVAATGNIIIERKIIHELGLCGHIEDIAVNSKYQ 108
Query: 178 GTGGLSKLLE-------SENVIKVIHDCRNDSILLYEQFG 210
G G L++ K+I DC ++ YE+ G
Sbjct: 109 GQGLGKLLIDQLVTIGFDYGCYKIILDCDEKNVKFYEKCG 148
>4ag7_A Glucosamine-6-phosphate N-acetyltransferase; HET: COA; 1.55A
{Caenorhabditis elegans} PDB: 4ag9_A*
Length = 165
Score = 32.6 bits (74), Expect = 0.050
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 128 VVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLE 187
V+E+ ++V + + D+V E+ + LL+
Sbjct: 72 VIEDSNSQKVVASASLVVEMKFIHGAGSRG--------RVEDVVVDTEMRRQKLGAVLLK 123
Query: 188 -------SENVIKVIHDCRNDSILLYEQFG 210
S V K+ +C + + Y QFG
Sbjct: 124 TLVSLGKSLGVYKISLECVPELLPFYSQFG 153
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 32.6 bits (74), Expect = 0.061
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 128 VVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLE 187
VVE++ ++V I + D+V E G LL
Sbjct: 88 VVEDVTLGQIVATATLIIEHKFIHSCAKR--------GRVEDVVVSDECRGKQLGKLLLS 139
Query: 188 -------SENVIKVIHDCRNDSILLYEQFG 210
N K+ +C ++ Y++FG
Sbjct: 140 TLTLLSKKLNCYKITLECLPQNVGFYKKFG 169
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.6 bits (71), Expect = 0.13
Identities = 14/90 (15%), Positives = 21/90 (23%), Gaps = 35/90 (38%)
Query: 90 DQRYPSSNGGYVANNSDNFKTKVLQNTKVITNIKECSS----VVEELMRNELVTFDCEGI 145
+ G N N + EC +VE ++V C
Sbjct: 4 RESIDKRAGRRGPN----------LNIVLTC--PECKVYPPKIVERFSEGDVVCALC--- 48
Query: 146 NPGIKGQITLFSLGLLSGQVYIFDLVTCPE 175
GL+ + D T E
Sbjct: 49 -------------GLVLSDKLV-D--TRSE 62
>2vez_A Putative glucosamine 6-phosphate acetyltransferase;
acyltransferase; HET: ACO G6P; 1.45A {Aspergillus
fumigatus} PDB: 2vxk_A*
Length = 190
Score = 30.3 bits (68), Expect = 0.30
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 166 YIFDLVTCPEVVGTGGLSKLLE-------SENVIKVIHDCRNDSILLYEQFG 210
+I D+ G ++++ K I DC + Y + G
Sbjct: 127 HIEDIAVEKGQQGKKLGLRIIQALDYVAEKVGCYKTILDCSEANEGFYIKCG 178
>3i3g_A N-acetyltransferase; malaria, structural genomics, structural
genomics consortium, SGC,; 1.86A {Trypanosoma brucei}
PDB: 3fb3_A
Length = 161
Score = 30.1 bits (68), Expect = 0.39
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 166 YIFDLVTCPEVVGTG-G------LSKLLESENVIKVIHDCRNDSILLYEQFG 210
+I D+V P G G G L ++ S+ KVI D S+ YE+ G
Sbjct: 98 HIEDVVVDPSYRGAGLGKALIMDLCEISRSKGCYKVILDSSEKSLPFYEKLG 149
>3djc_A Type III pantothenate kinase; structural genomics, putative
transfera 2, protein structure initiative; 2.40A
{Legionella pneumophila subsp}
Length = 266
Score = 30.3 bits (69), Expect = 0.42
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 174 PEVVGTGGLSKLLESENVIKVIHD 197
++ TGG + L + + + +
Sbjct: 219 ILILATGGFASLFDKQGLYDHLVP 242
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 30.2 bits (69), Expect = 0.52
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 16/114 (14%)
Query: 108 FKTKVLQNTKVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYI 167
F + +L ++ + K V F P + +
Sbjct: 278 FGS-LLHEFGLLESPKALEEAPWPPPEGAFVGFVLSRKEP-------------MWADLLA 323
Query: 168 FDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
V K L + + D +L + G+ L D L
Sbjct: 324 LAAARGGRVHRAPEPYKALRDLKEARGLLA--KDLSVLALREGLGLPPGDDPML 375
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA
complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus}
PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A*
3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3t3f_A* 4df4_A*
4df8_A* 4dfj_A* 3rrh_A* 4dfm_A* 4dfp_A* 1ktq_A* 5ktq_A*
...
Length = 540
Score = 30.3 bits (69), Expect = 0.55
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 182 LSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
L L E+ ++ D +L + G+ L D L
Sbjct: 50 LRDLKEARGLLA------KDLSVLALREGLGLPPGDDPML 83
>3t90_A Glucose-6-phosphate acetyltransferase 1; GNAT fold, glcnac
biosynthesis, alpha/beta protein; HET: EPE; 1.50A
{Arabidopsis thaliana}
Length = 149
Score = 29.0 bits (65), Expect = 0.67
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 166 YIFDLVTCPEVVGTG-------GLSKLLESENVIKVIHDCRNDSILLYEQFG 210
+I D+V G L +S KVI DC ++ + YE+ G
Sbjct: 85 HIEDVVVDSRFRGKQLGKKVVEFLMDHCKSMGCYKVILDCSVENKVFYEKCG 136
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
anthracis str}
Length = 268
Score = 28.4 bits (64), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 174 PEVVGTGGLSKLLESENVIKVIHD 197
P+V+ TGGL+KL+ E+ + + D
Sbjct: 215 PKVIATGGLAKLISEESNVIDVVD 238
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding,
coenzyme A biosynthesis, cytoplasm, metal-binding,
nucleotide-binding, potassium; HET: PAU; 1.51A
{Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB:
3bf1_A* 3bf3_A* 2gtd_A
Length = 249
Score = 26.8 bits (60), Expect = 5.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 174 PEVVGTGGLSKLLESENVIKVIHD 197
VV TGG SK+++ ++ +
Sbjct: 212 LPVVLTGGQSKIVKDMIKHEIFDE 235
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 26.2 bits (58), Expect = 8.7
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 174 PEVVGTGGLSKLLESE-NVIKVIHD 197
E+ TGG ++L+ E +++ D
Sbjct: 234 CEIFLTGGDAELVRDELAGARIMPD 258
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,105,575
Number of extensions: 170080
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 26
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.9 bits)