RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5654
         (224 letters)



>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 206

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 19/135 (14%)

Query: 100 YVANNSDNFKTKVLQNTKVITNIKECSSVVEELMR------NELVTFDCEGINPGIKGQI 153
           +   +    +TK +     + +  + S  +  +        N  V FD        + + 
Sbjct: 9   FKMTDGSYVQTKTID----VGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETET 64

Query: 154 T----LFSLGLL----SGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILL 205
                 +SL  +            L           L +   S+ V  V      D  LL
Sbjct: 65  KTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDN-LKDLYRFFASKFVTFVGVQIEEDLDLL 123

Query: 206 YEQFGITLRNVFDTQ 220
            E  G+ +RN  +  
Sbjct: 124 RENHGLVIRNAINVG 138


>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain
           {Escherichia coli [TaxId: 562]}
          Length = 193

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 115 NTKVITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFS-LGLLSGQV-YIFDLVT 172
           N ++IT     +S+ E +     +  D E +        T +  LGL+         L+ 
Sbjct: 2   NYQMITTDDALASLCEAVRAFPAIALDTEFV-----RTRTYYPQLGLIQLFDGEHLALID 56

Query: 173 CPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
              +     L  +L   ++ K +H    D  +    FG   + + DTQ+
Sbjct: 57  PLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQI 105


>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA
           polymerase {Escherichia coli [TaxId: 562]}
          Length = 195

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 11/117 (9%)

Query: 114 QNTKVITNIKECSSVVEELMRNELVTFDCE--GINPGIKGQITLFSLGLLSGQVYIFDLV 171
            N   I + +   + + +L +  +  FD E   ++  I   +   S  +  G      + 
Sbjct: 5   DNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDN-ISANLVGLSFAIEPGVAAYIPVA 63

Query: 172 TCPEVVGTGG--------LSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQ 220
                             L  LLE E  +KV  + + D  +L           FDT 
Sbjct: 64  HDYLDAPDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTM 120


>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 292

 Score = 29.4 bits (65), Expect = 0.30
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 119 ITNIKECSSVVEELMRNELVTFDCEGINPGIKGQITLFSLGLLSGQVYIFDLVTCPEVVG 178
           +    E  S++E+L   + +  D E  +      I          + Y+ D +   E   
Sbjct: 88  VDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRE--N 145

Query: 179 TGGLSKLLESENVIKVIHDCRNDSILLYEQFGITLRNVFDTQL 221
              L+++  + +++KV H    D I L    G+ +  +FDT  
Sbjct: 146 LHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYH 188


>d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028
           {Pyrococcus furiosus [TaxId: 2261]}
          Length = 149

 Score = 27.0 bits (59), Expect = 1.3
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 9/54 (16%)

Query: 166 YIFDLVTCPEVVGTGGLSKL-------LESENVIKVIHDCR--NDSILLYEQFG 210
           YI+D+       G G  S L        +     K++      N ++  YE+ G
Sbjct: 84  YIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDNPAVKWYEERG 137


>d1q2ya_ d.108.1.1 (A:) Probable acetyltransferase YjcF {Bacillus
           subtilis [TaxId: 1423]}
          Length = 140

 Score = 26.7 bits (58), Expect = 1.6
 Identities = 4/52 (7%), Positives = 16/52 (30%), Gaps = 7/52 (13%)

Query: 166 YIFDLVTCPEVVGTGGLSKLLES-------ENVIKVIHDCRNDSILLYEQFG 210
            +  +         G    ++++             I + +  ++  Y++ G
Sbjct: 67  KLERICVLKSHRSAGVGGIIMKALEKAAADGGASGFILNAQTQAVPFYKKHG 118


>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 142

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 150 KGQITL--FSLGLLSGQVYIFDLVTCPEVVGTGGLSKLLESENVIKVIHDCRNDSILLYE 207
            G I L  F L LL+ +       +     G G   KL + + V +     +N   + YE
Sbjct: 37  SGPIQLWQFLLELLTDKSCQ----SFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYE 92

Query: 208 QFGITLRNVFDTQLL 222
           +    LR  +D  ++
Sbjct: 93  KLSRGLRYYYDKNII 107


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 750,242
Number of extensions: 31554
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 12
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)