BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5658
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HPA|A Chain A, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|B Chain B, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|C Chain C, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|2HPA|D Chain D, Structural Origins Of L(+)-Tartrate Inhibition Of Human
Prostatic Acid Phosphatase
pdb|1CVI|A Chain A, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|B Chain B, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|C Chain C, Crystal Structure Of Human Prostatic Acid Phosphatase
pdb|1CVI|D Chain D, Crystal Structure Of Human Prostatic Acid Phosphatase
Length = 342
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 2 HY-LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
HY LG+ +R RY FL E Y + + S D+DR LMSA L+PP GV+IWN +
Sbjct: 46 HYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL- 104
Query: 61 KFFQPIPIKSFDSSQD-LIFNDGKSCPPY-EKELNKVLSREMADINAKYKDIYEYVAYHT 118
+QPIP+ + S+D L++ ++CP + E E + S E YKD + +
Sbjct: 105 -LWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLS 163
Query: 119 GRNITTLREV-NEVYQTLRIEFENGRQMPEWTKQ 151
G + L + ++VY L E + +P W +
Sbjct: 164 GLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATE 197
>pdb|1ND5|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND5|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|A Chain A, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|B Chain B, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|C Chain C, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
pdb|1ND6|D Chain D, Crystal Structures Of Human Prostatic Acid Phosphatase In
Complex With A Phosphate Ion And
Alpha-Benzylaminobenzylphosphonic Acid Update The
Mechanistic Picture And Offer New Insights Into
Inhibitor Design
Length = 354
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Query: 2 HY-LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
HY LG+ +R RY FL E Y + + S D+DR LMSA L+PP GV+IWN +
Sbjct: 46 HYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPIL- 104
Query: 61 KFFQPIPIKSFDSSQD-LIFNDGKSCPPY-EKELNKVLSREMADINAKYKDIYEYVAYHT 118
+QPIP+ + S+D L++ ++CP + E E + S E YKD + +
Sbjct: 105 -LWQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLS 163
Query: 119 GRNITTLREV-NEVYQTLRIEFENGRQMPEWTKQ 151
G + L + ++VY L E + +P W +
Sbjct: 164 GLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATE 197
>pdb|1RPA|A Chain A, Three-Dimensional Structure Of Rat Acid Phosphatase In
Complex With L(+) Tartrate
pdb|1RPT|A Chain A, Crystal Structures Of Rat Acid Phosphatase Complexed With
The Transitions State Analogs Vanadate And Molybdate:
Implications For The Reaction Mechanism
Length = 342
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 6/154 (3%)
Query: 2 HY-LGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
HY LG +R RY FL Y + + S D+DR LMSA L+PP G +IWN +
Sbjct: 46 HYELGSYIRRRYGRFLNNSYKHDQVYIRSTDVDRTLMSAMTNLAALFPPEGNSIWNPRL- 104
Query: 61 KFFQPIPIKSFDSSQD-LIFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHT 118
+QPIP+ + S+D L++ + CP +++ ++ L S E YK + + +
Sbjct: 105 -LWQPIPVHTVSLSEDRLLYLPFRDCPRFQELKSETLKSEEFLKRLQPYKSFIDTLPSLS 163
Query: 119 GRNITTLREV-NEVYQTLRIEFENGRQMPEWTKQ 151
G L E+ + +Y L E + +P W +
Sbjct: 164 GFEDQDLFEIWSRLYDPLYCESVHNFTLPTWATE 197
>pdb|3IT3|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
pdb|3IT3|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase D261a Mutant Complexed With Substrate 3'-Amp
Length = 342
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 4 LGQSLRLRYN---GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN-- 58
LG LR RY G L E Y +I S +R ++SAQ + GLYP + D
Sbjct: 51 LGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDP 110
Query: 59 -VGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADIN 104
+ FQPIPI + + LI PYE+ L VL ++E A
Sbjct: 111 AIKDRFQPIPIMTLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNF 163
Query: 105 AKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--G 162
AK++ I G I+ L +V V L + +G+ +P+ Q ++ AL G
Sbjct: 164 AKWQQIL-------GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWG 216
Query: 163 LYNQVIFYNDKMKRIKAGHLMFSAID 188
L Q F + K+ I G L I+
Sbjct: 217 LAQQ--FKSQKVSYIMGGKLTNRMIE 240
>pdb|3IT0|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT0|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With Phosphate
pdb|3IT1|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT1|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Complexed With L(+)-Tartrate
pdb|3IT2|A Chain A, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
pdb|3IT2|B Chain B, Crystal Structure Of Ligand-Free Francisella Tularensis
Histidine Acid Phosphatase
Length = 342
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 4 LGQSLRLRYN---GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN-- 58
LG LR RY G L E Y +I S +R ++SAQ + GLYP + D
Sbjct: 51 LGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDP 110
Query: 59 -VGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADIN 104
+ FQPIPI + + LI PYE+ L VL ++E A
Sbjct: 111 AIKDRFQPIPIMTLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNF 163
Query: 105 AKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--G 162
AK++ I G I+ L +V V L + +G+ +P+ Q ++ AL G
Sbjct: 164 AKWQQIL-------GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWG 216
Query: 163 LYNQVIFYNDKMKRIKAGHLMFSAID 188
L Q F + K+ I G L I+
Sbjct: 217 LAQQ--FKSQKVSYIMGGKLTNRMIE 240
>pdb|4E3W|A Chain A, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
pdb|4E3W|B Chain B, Crystal Structure Francisella Tularensis Histidine Acid
Phosphatase Cryoprotected With Proline
Length = 342
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 4 LGQSLRLRYN---GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDN-- 58
LG LR RY G L E Y +I S +R ++SAQ + GLYP + D
Sbjct: 51 LGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGDGDP 110
Query: 59 -VGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVL-------------SREMADIN 104
+ FQPIPI + + LI PYE+ L VL ++E A
Sbjct: 111 AIKDRFQPIPIMTLSADSRLI------QFPYEQYL-AVLKKYVYNSPEWQNKTKEAAPNF 163
Query: 105 AKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALA--G 162
AK++ I G I+ L +V V L + +G+ +P+ Q ++ AL G
Sbjct: 164 AKWQQIL-------GNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWG 216
Query: 163 LYNQVIFYNDKMKRIKAGHLMFSAID 188
L Q F + K+ I G L I+
Sbjct: 217 LAQQ--FKSQKVSYIMGGKLTNRMIE 240
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 58 NVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYH 117
NV + + ++ + D++ K+ P ++E+N+ +RE+AD KY Y +
Sbjct: 125 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD---KYGIPYFETSAA 181
Query: 118 TGRNI 122
TG+N+
Sbjct: 182 TGQNV 186
>pdb|4G6Z|A Chain A, Crystal Structure Of A Glutamyl-Trna Synthetase Glurs From
Burkholderia Thailandensis Bound To L-Glutamate
Length = 490
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 100 MADINAKYKDIYE-----YVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFP 154
M D + K+I E Y A G + + V + + +EF + EWTK+
Sbjct: 377 MKDRASTVKEIAENSAMFYRAPAPGADALA-QHVTDAVRPALVEFAAALKTVEWTKEAIA 435
Query: 155 SKLKALAGLY 164
+ LKA+ G +
Sbjct: 436 AALKAVLGAH 445
>pdb|1WNF|A Chain A, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
pdb|1WNF|B Chain B, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
Length = 328
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 6 QSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQ------LISQGLYPPSGVNIWNDNV 59
++LRL Y G + E Y G I + D+ + S L +Q +Y GV++ V
Sbjct: 218 EALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIY--DGVDLQRYKV 275
Query: 60 GKF 62
G+
Sbjct: 276 GRI 278
>pdb|1WLS|A Chain A, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
pdb|1WLS|B Chain B, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
Length = 328
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 6 QSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQ------LISQGLYPPSGVNIWNDNV 59
++LRL Y G + E Y G I + D+ + S L +Q +Y GV++ V
Sbjct: 218 EALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIY--DGVDLQRYKV 275
Query: 60 GKF 62
G+
Sbjct: 276 GRI 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,170,413
Number of Sequences: 62578
Number of extensions: 258794
Number of successful extensions: 699
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 14
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)