Query psy5658
Match_columns 196
No_of_seqs 113 out of 967
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 23:20:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3720|consensus 100.0 1.2E-36 2.7E-41 250.8 16.0 193 1-195 79-281 (411)
2 PF00328 His_Phos_2: Histidine 99.9 1.2E-26 2.7E-31 188.0 18.1 193 1-195 71-281 (347)
3 PRK10172 phosphoanhydride phos 99.9 5.5E-23 1.2E-27 169.2 16.6 178 1-192 81-307 (436)
4 cd07061 HP_HAP_like Histidine 99.8 1.1E-19 2.4E-24 141.2 11.0 134 1-195 27-165 (242)
5 PRK10173 glucose-1-phosphatase 99.8 6.8E-18 1.5E-22 139.5 17.0 175 1-191 79-296 (413)
6 KOG1382|consensus 99.5 8.6E-13 1.9E-17 107.8 13.6 184 3-195 139-328 (467)
7 KOG3672|consensus 99.2 6E-11 1.3E-15 94.8 9.9 137 1-150 177-319 (487)
8 KOG1057|consensus 96.8 0.0059 1.3E-07 53.9 7.5 49 2-51 521-576 (1018)
9 cd07040 HP Histidine phosphata 95.2 0.028 6E-07 39.8 3.7 36 3-47 36-71 (153)
10 PF00300 His_Phos_1: Histidine 75.6 2.1 4.5E-05 30.1 1.9 21 26-46 50-70 (158)
11 smart00855 PGAM Phosphoglycera 74.1 5.2 0.00011 28.4 3.7 22 25-46 50-71 (155)
12 TIGR03162 ribazole_cobC alpha- 72.4 3.4 7.4E-05 30.0 2.4 21 26-46 46-66 (177)
13 cd07067 HP_PGM_like Histidine 65.5 5.8 0.00012 27.9 2.4 21 26-46 50-70 (153)
14 TIGR00249 sixA phosphohistidin 64.6 6.5 0.00014 28.1 2.5 21 26-46 47-67 (152)
15 PRK03482 phosphoglycerate muta 64.1 6.5 0.00014 29.7 2.6 21 26-46 50-70 (215)
16 PTZ00123 phosphoglycerate muta 59.2 8.6 0.00019 29.7 2.5 22 26-47 39-60 (236)
17 PRK01295 phosphoglyceromutase; 56.7 10 0.00022 28.6 2.5 21 26-46 53-73 (206)
18 PRK14116 gpmA phosphoglyceromu 56.1 10 0.00023 29.0 2.5 20 26-45 52-71 (228)
19 PRK10848 phosphohistidine phos 54.9 11 0.00024 27.2 2.3 21 26-46 47-67 (159)
20 PRK15004 alpha-ribazole phosph 54.1 13 0.00027 27.8 2.6 21 26-46 49-69 (199)
21 PRK14115 gpmA phosphoglyceromu 53.5 13 0.00027 29.1 2.6 21 26-46 51-71 (247)
22 TIGR03848 MSMEG_4193 probable 52.4 12 0.00027 27.9 2.3 21 26-46 49-69 (204)
23 PRK13463 phosphatase PhoE; Pro 50.0 17 0.00036 27.3 2.7 19 26-44 51-69 (203)
24 PRK14119 gpmA phosphoglyceromu 49.7 16 0.00034 28.0 2.6 20 26-45 52-71 (228)
25 TIGR01258 pgm_1 phosphoglycera 49.6 15 0.00032 28.6 2.4 21 26-46 51-71 (245)
26 PTZ00122 phosphoglycerate muta 47.0 18 0.00039 29.2 2.5 21 26-46 156-176 (299)
27 COG0406 phoE Broad specificity 44.3 37 0.0008 25.3 3.8 25 23-47 50-74 (208)
28 PRK07238 bifunctional RNase H/ 44.0 20 0.00043 29.7 2.4 21 26-46 221-241 (372)
29 PRK15416 lipopolysaccharide co 43.4 25 0.00055 26.6 2.7 19 26-44 103-121 (201)
30 PRK14118 gpmA phosphoglyceromu 42.3 22 0.00047 27.3 2.3 21 26-46 51-71 (227)
31 PRK01112 phosphoglyceromutase; 41.1 26 0.00057 26.9 2.6 20 26-45 50-69 (228)
32 PRK14120 gpmA phosphoglyceromu 40.2 25 0.00055 27.4 2.4 19 26-44 55-73 (249)
33 PRK13462 acid phosphatase; Pro 38.0 27 0.00059 26.2 2.2 17 26-42 56-72 (203)
34 PRK14117 gpmA phosphoglyceromu 36.0 32 0.0007 26.4 2.4 19 26-44 52-70 (230)
35 PF14475 Mso1_Sec1_bdg: Sec1-b 35.5 61 0.0013 17.8 2.7 21 129-149 20-41 (41)
36 PRK06193 hypothetical protein; 34.8 39 0.00084 25.7 2.6 18 26-43 98-115 (206)
37 PF13056 DUF3918: Protein of u 32.3 28 0.0006 19.3 1.1 15 33-47 2-16 (43)
38 KOG0095|consensus 27.9 36 0.00078 24.6 1.3 14 39-52 24-37 (213)
39 PF06116 RinB: Transcriptional 27.8 32 0.0007 19.8 0.8 15 1-15 14-29 (53)
40 PF07425 Pardaxin: Pardaxin; 26.9 35 0.00076 16.9 0.8 23 174-196 6-28 (33)
41 COG2062 SixA Phosphohistidine 26.0 61 0.0013 23.7 2.2 22 26-47 50-71 (163)
42 COG3492 Uncharacterized protei 25.5 1E+02 0.0022 20.1 2.9 35 106-140 18-52 (104)
43 PTZ00322 6-phosphofructo-2-kin 25.2 93 0.002 28.1 3.7 22 24-45 467-488 (664)
44 KOG4646|consensus 22.3 99 0.0021 22.2 2.6 30 21-50 101-130 (173)
45 COG3944 Capsular polysaccharid 20.8 1.3E+02 0.0029 23.1 3.2 46 4-49 133-187 (226)
No 1
>KOG3720|consensus
Probab=100.00 E-value=1.2e-36 Score=250.77 Aligned_cols=193 Identities=28% Similarity=0.484 Sum_probs=163.8
Q ss_pred CchhHHHHHHHh---hcccccCCCCCeEEEEeCCChhhHHHHHHHHcccCCCC-CCCCCCCCCCCCcceeeeeeecCCCC
Q psy5658 1 MHYLGQSLRLRY---NGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPS-GVNIWNDNVGKFFQPIPIKSFDSSQD 76 (196)
Q Consensus 1 ~~~lG~~lR~rY---~~fl~~~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~-~~~~~~~~~~~~~~pipi~t~~~~~D 76 (196)
|++||++||+|| .+||++.|++++|++|||+++||++|||++++||||+. ....|++. .+|+||||++.....|
T Consensus 79 ~~~LG~~LR~rYvr~~~fL~~~y~~~ev~iRStd~nRtl~SAqs~laGlfp~~~~~~~~~~~--~~W~piPV~~~~~~~D 156 (411)
T KOG3720|consen 79 MFELGRFLRKRYVRYGNFLSPKYNPKEVYIRSTDVNRTLMSAQSVLAGLFPPEGRKMGWNYP--DGWQPVPVPTHTLEED 156 (411)
T ss_pred HHHHHHHHHHHHhhccccCCcccCcceEEEecCCccHHHHHHHHHHHhhCCCCCCCcccCcc--cCCCceeeEEeecCcc
Confidence 589999999966 56999999999999999999999999999999999997 44567733 3699999999986666
Q ss_pred c--cccCCCCChHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHhhcCCCCcCHhhHHHHHHHHHHHHHcCCCCCCCCcch-
Q psy5658 77 L--IFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQV- 152 (196)
Q Consensus 77 ~--l~~~~~~C~~~~~~~~~~~-s~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~D~~~~~~~~~~~~p~~~~~~- 152 (196)
. ++.....||++...++... .+++.+..+++.+++..+.+.+|.+......++.++|.+.|++.++.++|+|++++
T Consensus 157 ~~~~~~~~~~Cpr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~d~l~~e~~~~~~~p~w~~~~~ 236 (411)
T KOG3720|consen 157 DLLLLPQKAPCPRYDELWREVAEEPELQKINEPVAELLRRLTNHTGLTHVDLDNFNDLYDTLKCEQFNNLPLPPWLNDQA 236 (411)
T ss_pred hhhhccccCCCCcHHHHHHHHhhhhhhhhcccHHHHHHHHHHHhhCCCcccchhhcccccHHHHHHHhCCCCCcchhhHH
Confidence 4 3334788999999998888 68888888999999999999999987457788899999999999999999999986
Q ss_pred --hHHHHHHHHHHHHHHhcChhhhhhhhhhHHHHHHHHHHHhhhc
Q psy5658 153 --FPSKLKALAGLYNQVIFYNDKMKRIKAGHLMFSAIDYCHISST 195 (196)
Q Consensus 153 --~~~~l~~~~~~~~~~~~~~~~~~~l~~g~ll~~i~~~m~~~i~ 195 (196)
..+.++.+....+.....++++++++||+||++|+++|..++.
T Consensus 237 ~~~~~~i~~~~~~~~~~~~~~~e~~kl~gG~lln~il~~~~~k~~ 281 (411)
T KOG3720|consen 237 QIFYDSIQAFSEGLFVGPDYSPEMRKLRGGPLLNDLLNNMVEKSS 281 (411)
T ss_pred HHHHHHHHHHHHHHccCcchhHHHHHhccChhHHHHHHHHHHHHh
Confidence 4555555555444444578999999999999999999988764
No 2
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=99.95 E-value=1.2e-26 Score=188.00 Aligned_cols=193 Identities=25% Similarity=0.423 Sum_probs=146.1
Q ss_pred CchhHHHHHHHhhcccccCCCCCeEEEEeCCChhhHHHHHHHHcccCCCCC---CCCCCCCCCCCcceeeeeeecC----
Q psy5658 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSG---VNIWNDNVGKFFQPIPIKSFDS---- 73 (196)
Q Consensus 1 ~~~lG~~lR~rY~~fl~~~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~---~~~~~~~~~~~~~pipi~t~~~---- 73 (196)
|++||++||+||.+|+++.+++++|+||||+.+||++||+||++||||+.. ...+.+ ...|+++|+++.+.
T Consensus 71 ~~~lG~~lr~~Y~~l~~~~~~~~~v~vrSt~~~Rt~~Sa~af~~Gl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (347)
T PF00328_consen 71 HYQLGKRLRERYPGLFPDNYNPEQVYVRSTNKQRTIQSAQAFLQGLYPPSGEPFPDITQP--PNSWQPIPVHTIPEIKKN 148 (347)
T ss_dssp HHHHHHHHHHHHHTSSTSSS-TTTEEEEEESSHHHHHHHHHHHHHHSHTTSS-ECTTTSC--TSCTCTEEEEEEECCHCG
T ss_pred HHHHHHHHHHHHHHhccccccccceeEEEeccchHHHHHHHHHHHHhCCCcccccccccc--ccCCCCcceeeccccccc
Confidence 578999999999999999999999999999999999999999999998876 222222 23589999999987
Q ss_pred CCCccccCCCCChHHHH--HHHHHh-cHHHHHHHHHHHHHHH-HHHhhcCC-CCcCHhhHHHHHHHHHHHHH--cCCCCC
Q psy5658 74 SQDLIFNDGKSCPPYEK--ELNKVL-SREMADINAKYKDIYE-YVAYHTGR-NITTLREVNEVYQTLRIEFE--NGRQMP 146 (196)
Q Consensus 74 ~~D~l~~~~~~C~~~~~--~~~~~~-s~~~~~~~~~~~~~~~-~l~~~~g~-~~~~~~~~~~~~D~~~~~~~--~~~~~p 146 (196)
..+.+......||.+.+ ...... ..++.+..+.+...+. .+...... ...+..+.+..++.+.++.. ++.++|
T Consensus 149 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (347)
T PF00328_consen 149 DDDILLPNYDNCPAYNEIDSENEKEQSEEIDKWNQDFQESLAKRLQKVIPGEDNLTFFDVWAIFDDCLYEQIYNDGSPFP 228 (347)
T ss_dssp TTSSSSTSHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECTHHHHHHHHHHHHHHHHHHTT-GGG
T ss_pred cchhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCccccccchhhhhhhhhhhhhhccCCCCCCc
Confidence 55555566678999998 233333 5666677777776666 77777433 23356777777766666655 788999
Q ss_pred CCCcc--hhHHHHHHHHHHHH-HH-hcChhhhhhhhhhHHHHHHHHHHHhhhc
Q psy5658 147 EWTKQ--VFPSKLKALAGLYN-QV-IFYNDKMKRIKAGHLMFSAIDYCHISST 195 (196)
Q Consensus 147 ~~~~~--~~~~~l~~~~~~~~-~~-~~~~~~~~~l~~g~ll~~i~~~m~~~i~ 195 (196)
.|+++ +....++.+.++.+ .. ++.+++.+++.||+|+++|++.|...++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~ 281 (347)
T PF00328_consen 229 EWFTDMKEDALQLEYLEDLKEYYQYYGYSDEIARLQGGPLLNELLRRLKQAIN 281 (347)
T ss_dssp GGSCHTSHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHHHHHCHS
T ss_pred hhhcccchHHHHHHhhhhHHHHhhcccCCchHHHHHHhHHHHHHHHHHhhccc
Confidence 99988 66666666665543 22 3678899999999999999999988765
No 3
>PRK10172 phosphoanhydride phosphorylase; Provisional
Probab=99.91 E-value=5.5e-23 Score=169.18 Aligned_cols=178 Identities=15% Similarity=0.179 Sum_probs=135.3
Q ss_pred CchhHHHHHHHhh--cccccC--CCCCeEEEEeCCChhhHHHHHHHHcccCCCCCCCCCCCCCCCCcceeeeeeecC--C
Q psy5658 1 MHYLGQSLRLRYN--GFLKEE--YYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDS--S 74 (196)
Q Consensus 1 ~~~lG~~lR~rY~--~fl~~~--~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~~~~~~~~~~~~~~pipi~t~~~--~ 74 (196)
|++||+++|+||. +||++. |++++|++||+..+||++||++|++||||+++ ||||+.+. .
T Consensus 81 ~~~lG~~lR~rY~~~~lL~~~~c~~~~~v~v~a~~~~RTi~SAqafl~GlyP~c~--------------i~vh~~~~~~~ 146 (436)
T PRK10172 81 VTLLGHYQRQRLVADGLLAAKGCPQPGQVAAIADVDQRTRKTGEAFLAGLAPDCA--------------ITVHTQADTSK 146 (436)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCCcceEEEEeCCchHHHHHHHHHHHhcCCCCC--------------CcceecCCCCC
Confidence 5789999999995 599985 88999999999999999999999999999986 46888766 5
Q ss_pred CCccccC-CCCChHHHHHHHHH----h-cHHHHHHHHHHHHHHHHHHhhcCC------------C--------------C
Q psy5658 75 QDLIFND-GKSCPPYEKELNKV----L-SREMADINAKYKDIYEYVAYHTGR------------N--------------I 122 (196)
Q Consensus 75 ~D~l~~~-~~~C~~~~~~~~~~----~-s~~~~~~~~~~~~~~~~l~~~~g~------------~--------------~ 122 (196)
.|++|++ ...|+.++....+. . ..++..+.+.+.+.++.|.++++. . +
T Consensus 147 ~DplF~pv~~~~~~~d~~~~~~a~~~~~~g~~~~~~~~~~~~~~~L~~vl~~~~s~~C~~~~~~~~~C~l~~~~p~~~~~ 226 (436)
T PRK10172 147 PDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTQRYQTAFRELERVLNFAQSPLCLSREKQDKSCSLTQALPSELKV 226 (436)
T ss_pred CCCccChhhcCCCccCHHHHHHHHHHHhCCchhhhhHhHHHHHHHHHHHhccccccccccccCCCCCccccccCCcceee
Confidence 7999986 44566666543221 1 334555666676777777764431 0 0
Q ss_pred -------cCHhhH-HHHHHHHHHHHHcCCCCCCCCcc---hhHHHHHHHHHHHHHHhcChhhhhhhhhhHHHHHHHHHHH
Q psy5658 123 -------TTLREV-NEVYQTLRIEFENGRQMPEWTKQ---VFPSKLKALAGLYNQVIFYNDKMKRIKAGHLMFSAIDYCH 191 (196)
Q Consensus 123 -------~~~~~~-~~~~D~~~~~~~~~~~~p~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~l~~g~ll~~i~~~m~ 191 (196)
+.+..+ ..+.|.+..++.+|+|.+.|... +.+..|..+.+..++..+.++++++..|||||+.|++.|.
T Consensus 227 ~~~~~~l~G~~~las~l~e~~lLqy~eg~p~vaWg~~~~~~~~~~L~~l~n~~fd~~~~tp~vAr~~a~pLL~~I~~~L~ 306 (436)
T PRK10172 227 SADNVSLSGAVSLASMLTEIFLLQQAQGMPEPAWGRITDSHQWNTLLSLHNAQFYLLQRTPEVARHRATPLLDLIMTALT 306 (436)
T ss_pred cCCCCccccHHHHHhHHHHHHHHHHhcCCCcccccCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHhcccHHHHHHHHHHh
Confidence 111212 35678889999999999999754 4455677777888888899999999999999999999995
Q ss_pred h
Q psy5658 192 I 192 (196)
Q Consensus 192 ~ 192 (196)
+
T Consensus 307 ~ 307 (436)
T PRK10172 307 P 307 (436)
T ss_pred c
Confidence 4
No 4
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=99.82 E-value=1.1e-19 Score=141.24 Aligned_cols=134 Identities=23% Similarity=0.313 Sum_probs=103.7
Q ss_pred CchhHHHHHHHhhccccc-CCCCCeEEEEeCCChhhHHHHHHHHcccCCCCCCCCCCCCCCCCcceeeeeeecCCCCccc
Q psy5658 1 MHYLGQSLRLRYNGFLKE-EYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIF 79 (196)
Q Consensus 1 ~~~lG~~lR~rY~~fl~~-~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~~~~~~~~~~~~~~pipi~t~~~~~D~l~ 79 (196)
|+++|++||++|.+++.. .++++++++|||+.+||++||++|+.||||+.. |+++||++.+.+.|
T Consensus 27 ~~~~G~~lr~~y~~~~~~~~~~~~~~~~~ss~~~Rt~~Sa~~~~~gl~~~~~-----------~~~~~i~~~~~~~~--- 92 (242)
T cd07061 27 AFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG-----------WQPIAVHTIPEEED--- 92 (242)
T ss_pred HHHHHHHHHHHHHHhcccccCCCCeeEEEECCCcHHHHHHHHHHHhcCCCcc-----------cCCCceEEecCCCc---
Confidence 578999999999766553 589999999999999999999999999999854 68889999876655
Q ss_pred cCCCCChHHHHHHHHHhcHHHHHHHHHHHHHHHHHHhhcCCCCcCHhhHHHHHHHHHHHHHcCCCCCCCC---cchhHHH
Q psy5658 80 NDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWT---KQVFPSK 156 (196)
Q Consensus 80 ~~~~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~D~~~~~~~~~~~~p~~~---~~~~~~~ 156 (196)
++..++|.+.++.+++.+.++|+ +.+.+..
T Consensus 93 -----------------------------------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (242)
T cd07061 93 -----------------------------------------------DVSNLFDLCAYETVAKGYSAPFCDLFTEEEWVK 125 (242)
T ss_pred -----------------------------------------------hHHHHHHHCHHHHHhcCCCChhhcccCHHHHhh
Confidence 56677888889999876543443 3333334
Q ss_pred HHHHHHHHHHH-hcChhhhhhhhhhHHHHHHHHHHHhhhc
Q psy5658 157 LKALAGLYNQV-IFYNDKMKRIKAGHLMFSAIDYCHISST 195 (196)
Q Consensus 157 l~~~~~~~~~~-~~~~~~~~~l~~g~ll~~i~~~m~~~i~ 195 (196)
+..+.+..+.. ....+.+.+..|++|+++|++.|+++++
T Consensus 126 ~~~~~dl~~~~~~~~~~~~~~~~~~~ll~~i~~~l~~~~~ 165 (242)
T cd07061 126 LEYLNDLKFYYGYGPGNPLARAQGSPLLNELLARLTNGPS 165 (242)
T ss_pred cchHhHHHHHhccCCCCcchHHhhHHHHHHHHHHHhCCCC
Confidence 44554544432 2334789999999999999999987654
No 5
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=99.79 E-value=6.8e-18 Score=139.48 Aligned_cols=175 Identities=17% Similarity=0.301 Sum_probs=116.2
Q ss_pred CchhHHHHHHHh--hcccccC--CCCCeEEEEeCCChhhHHHHHHHHcccCCCCCCCCCCCCCCCCcceeeeeeec--CC
Q psy5658 1 MHYLGQSLRLRY--NGFLKEE--YYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFD--SS 74 (196)
Q Consensus 1 ~~~lG~~lR~rY--~~fl~~~--~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~~~~~~~~~~~~~~pipi~t~~--~~ 74 (196)
+..+|+++|++| .+||+.. +++++|++||+...||++||++|+.||||+++ |+|++.+ ..
T Consensus 79 ~~~~G~~~r~~~~~~~ll~~~~cp~~~~v~~~a~~~~RT~~Sa~afl~Gl~P~c~--------------i~v~~~~~~~~ 144 (413)
T PRK10173 79 EVYMGHYMREWLAQQGLVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCD--------------IPVHHQEKMGT 144 (413)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcCeEEEEeCCchHHHHHHHHHHHhcCCCCC--------------ceeeecCCcCC
Confidence 367999999999 5899885 58899999999999999999999999999975 3466543 34
Q ss_pred CCccccCC--CCChHHHHHHHHHhcHHHHHHHHHHHHHHHHHHhhcCC-----------------C------------Cc
Q psy5658 75 QDLIFNDG--KSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGR-----------------N------------IT 123 (196)
Q Consensus 75 ~D~l~~~~--~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~l~~~~g~-----------------~------------~~ 123 (196)
.|+++++- ...+.+.+........... ....++-++.|..++++ + ++
T Consensus 145 ~DPlF~p~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~L~~vld~~~s~~C~~~~~c~~~~~~~~~~~~~~~~~~~~ 222 (413)
T PRK10173 145 MDPTFNPVITDDSAAFREQALAAMEKELS--KLQLTPSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVS 222 (413)
T ss_pred CCCCCCccccCChHHHHHHHHHHhccchh--hccccHHHHHHHHHhCcccCccCCCCCCCcCcCCCCceeecCCCCcccc
Confidence 68988742 2344443332222211111 11122223333332221 0 01
Q ss_pred C-HhhHHHHHHHHHHHHHcCCCCC--CCCcchhHH---HHHHHHHHHHHHhcChhhhhhhhhhHHHHHHHHHHH
Q psy5658 124 T-LREVNEVYQTLRIEFENGRQMP--EWTKQVFPS---KLKALAGLYNQVIFYNDKMKRIKAGHLMFSAIDYCH 191 (196)
Q Consensus 124 ~-~~~~~~~~D~~~~~~~~~~~~p--~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~l~~g~ll~~i~~~m~ 191 (196)
. +.-...++|.+.+++.+|+++| .|.+....+ .+..+...++...+.++++.+..|||||+.|.+.+.
T Consensus 223 G~~~~a~~l~D~l~lqy~~G~~l~~~~W~~~~t~~~~~~l~~L~~~~~~~~~~tp~~ar~~g~pLL~~i~~~L~ 296 (413)
T PRK10173 223 GPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKTDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVKYIDKALV 296 (413)
T ss_pred CchhhhhhHHHHHHHHHHhcCCCCCCCccccCCHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHh
Confidence 1 2233578999999999999865 899764444 444444444555667899999999999999977775
No 6
>KOG1382|consensus
Probab=99.49 E-value=8.6e-13 Score=107.79 Aligned_cols=184 Identities=16% Similarity=0.158 Sum_probs=125.3
Q ss_pred hhHHHHHHHhhcccccCCCCCeEEEEeCCChhhHHHHHHHHcccCCCCCCCCCCCCCCCCcceeeeeeecCCCCccccCC
Q psy5658 3 YLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFNDG 82 (196)
Q Consensus 3 ~lG~~lR~rY~~fl~~~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~~~~~~~~~~~~~~pipi~t~~~~~D~l~~~~ 82 (196)
.++.++++++....-.-+|+.-+.|++|..+||..||++|+.|||...... ++ .+.+.-...+...| ++++
T Consensus 139 ~~a~R~~r~f~~~y~~~~n~~~y~i~tt~~~R~~dSA~~F~~GLfg~~~~~-----~t--~~~~~E~~~~gan~--Lr~y 209 (467)
T KOG1382|consen 139 MLAKRLARRFPALYYELENPTVYNINTTASQRVVDSAQAFAYGLFGEDHFN-----IT--LQTVSEAPSAGAND--LRFY 209 (467)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEeeccchHHHHHHHHHHHhhhccccccC-----CC--ceeeeccCCCCcch--hhhh
Confidence 456667776655554558999999999999999999999999999754321 11 22222211122233 6778
Q ss_pred CCChHHHHHHHHHhcHHHHHHH--HHHHHHHHHHHhhcCCCCcCHhhHHHHHHHHHHHHHcCCCCCCCCcchhHHHH---
Q psy5658 83 KSCPPYEKELNKVLSREMADIN--AKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKL--- 157 (196)
Q Consensus 83 ~~C~~~~~~~~~~~s~~~~~~~--~~~~~~~~~l~~~~g~~~~~~~~~~~~~D~~~~~~~~~~~~p~~~~~~~~~~l--- 157 (196)
..||.++....+-....+.++. ..+.++.++++..++...-+..++..++..|..|.+-.-.-..|++-..++++
T Consensus 210 ~~Cp~~k~~~~k~t~~~~~~~~~~~~l~~I~~rl~k~~~~~nLt~~Di~~lf~~C~yE~a~~~~~S~~C~iFt~~e~~~~ 289 (467)
T KOG1382|consen 210 NSCPKWKTDVNKTTDDILEKFLTEPYLNPIAKRLNKRNDLLNLTNADISSLFFWCAYEIALKGYRSDWCDIFTPDELLVF 289 (467)
T ss_pred hcCcchhccccccchHHHHHHhcchhhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCccccCcCHHHHhHh
Confidence 8999999887752233333333 34678888888887763225678889999888888754333677765555444
Q ss_pred HHHHHHHH-HHhcChhhhhhhhhhHHHHHHHHHHHhhhc
Q psy5658 158 KALAGLYN-QVIFYNDKMKRIKAGHLMFSAIDYCHISST 195 (196)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~~~l~~g~ll~~i~~~m~~~i~ 195 (196)
+...++.+ +..+++-++.+-.||+|++++++.|++.++
T Consensus 290 EY~~DL~~yy~~GyGy~~~~~~g~~l~ndl~~~L~~~~~ 328 (467)
T KOG1382|consen 290 EYLEDLEYYYGDGYGYELNSSLGCPLFNDLLKSLRESEE 328 (467)
T ss_pred hhhhhHHHHhccCCCcchHhhhccHHHHHHHHHHhhhhc
Confidence 34445533 345567789999999999999999988764
No 7
>KOG3672|consensus
Probab=99.24 E-value=6e-11 Score=94.76 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=89.7
Q ss_pred CchhHHHHHHHhh----cccccCCCCCeEEEEeCCChhhHHHHHHHHcccCCCCCCCCCCCCCCCCcceeeeeeecCCCC
Q psy5658 1 MHYLGQSLRLRYN----GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQD 76 (196)
Q Consensus 1 ~~~lG~~lR~rY~----~fl~~~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~~~~~~~~~~~~~~pipi~t~~~~~D 76 (196)
|..+|+.+|++|. +..++.+..++.++.+|.++||+|||.||+-|+.|... |-||-|.. ...-
T Consensus 177 hL~~G~~~r~~Y~k~~lk~~pN~~sv~~lyv~TT~y~RT~QSaLA~lf~~lp~~~-----------w~~i~iR~--s~s~ 243 (487)
T KOG3672|consen 177 HLRLGKYFRHRYEKTKLKADPNQRSVADLYVVTTKYNRTVQSALAFLFLYLPRTF-----------WAPIQIRA--SNSS 243 (487)
T ss_pred HHhhhHHHHHHHhhccccCCccccccceeEEEeccccHHHHHHHHHHHHhcchhh-----------hheeeeec--Cccc
Confidence 5689999999993 34455677899999999999999999999999999854 55555543 2222
Q ss_pred ccccCCCCChHHHHHHHHHhcHHHHHHHHHH-HHHHHHHHhhcCCCC-cCHhhHHHHHHHHHHHHHcCCCCCCCCc
Q psy5658 77 LIFNDGKSCPPYEKELNKVLSREMADINAKY-KDIYEYVAYHTGRNI-TTLREVNEVYQTLRIEFENGRQMPEWTK 150 (196)
Q Consensus 77 ~l~~~~~~C~~~~~~~~~~~s~~~~~~~~~~-~~~~~~l~~~~g~~~-~~~~~~~~~~D~~~~~~~~~~~~p~~~~ 150 (196)
..--+.+.||.-+...++.....++++++.- ..+.+......-.+. +...+...+.|.+.|..||+.++|+--+
T Consensus 244 ~fC~g~C~Cp~~~~~r~~~e~~~~~q~lk~~~~dv~~~~~~~~~~~~p~~~~~pf~~ID~ll~~~Ch~~tlPCrrk 319 (487)
T KOG3672|consen 244 YFCIGQCACPIHKSIRRIYEEEHLQQFLKMKSDDVADEEKKFLSFPQPAASFDPFQMIDVLLSFICHRKTLPCRRK 319 (487)
T ss_pred ceecccccchHHHHHHHHHHHHHHHHHHhcchHHHHhhhcceeeecccccccCchhHHHHHHHhhhccCccccccc
Confidence 2222467899877776665423333343322 222222221111111 1234566888999999999999997543
No 8
>KOG1057|consensus
Probab=96.78 E-value=0.0059 Score=53.88 Aligned_cols=49 Identities=33% Similarity=0.607 Sum_probs=40.3
Q ss_pred chhHHHHHHHhh-----ccc--ccCCCCCeEEEEeCCChhhHHHHHHHHcccCCCCC
Q psy5658 2 HYLGQSLRLRYN-----GFL--KEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSG 51 (196)
Q Consensus 2 ~~lG~~lR~rY~-----~fl--~~~~~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~~ 51 (196)
-+||+.+|.-|. ||| ...| ..++.|+||+--|.++||.||+.||+--.+
T Consensus 521 eeLGr~FR~~~~gg~g~gllrLhst~-rhDlKIYaSdEgRVqmtAaaFAkgLL~lEg 576 (1018)
T KOG1057|consen 521 EELGRQFRCDYPGGQGLGLLRLHSTY-RHDLKIYASDEGRVQMTAAAFAKGLLALEG 576 (1018)
T ss_pred HHHHHHHHhcCCCCCCcceeeehhhh-hccceeEecCcchHHHHHHHHHHHHHhhcc
Confidence 379999999994 443 2334 589999999999999999999999997654
No 9
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=95.16 E-value=0.028 Score=39.82 Aligned_cols=36 Identities=36% Similarity=0.663 Sum_probs=29.3
Q ss_pred hhHHHHHHHhhcccccCCCCCeEEEEeCCChhhHHHHHHHHcccC
Q psy5658 3 YLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLY 47 (196)
Q Consensus 3 ~lG~~lR~rY~~fl~~~~~~~~i~irSt~~~Rt~~SA~a~l~Gly 47 (196)
.+|++|+++| ..-..|+||+..||++||+.++.+++
T Consensus 36 ~l~~~l~~~~---------~~~~~v~sSp~~R~~~Ta~~~~~~~~ 71 (153)
T cd07040 36 ELGKALRERY---------IKFDRIYSSPLKRAIQTAEIILEGLF 71 (153)
T ss_pred HHHHHHHHhC---------CCCCEEEECChHHHHHHHHHHHHHhc
Confidence 4667776666 33457899999999999999999997
No 10
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=75.59 E-value=2.1 Score=30.13 Aligned_cols=21 Identities=38% Similarity=0.877 Sum_probs=18.7
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|.+|+..||++||..+..++
T Consensus 50 ~i~~Sp~~R~~qTA~~~~~~~ 70 (158)
T PF00300_consen 50 VIYSSPLRRCIQTAEIIAEGL 70 (158)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEecCCcchhhhhhchhhccc
Confidence 388999999999999988865
No 11
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=74.07 E-value=5.2 Score=28.37 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.1
Q ss_pred EEEEeCCChhhHHHHHHHHccc
Q psy5658 25 IKFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 25 i~irSt~~~Rt~~SA~a~l~Gl 46 (196)
-.|.||+..||++||+.+...+
T Consensus 50 ~~i~sSpl~Ra~qTa~~i~~~~ 71 (155)
T smart00855 50 DVIYSSPLLRARETAEALAIAL 71 (155)
T ss_pred CEEEeCchHHHHHHHHHHHHhc
Confidence 3588999999999999998766
No 12
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=72.36 E-value=3.4 Score=30.02 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||+.++..+
T Consensus 46 ~i~sSpl~Ra~qTA~~i~~~~ 66 (177)
T TIGR03162 46 AVYSSPLSRCRELAEILAERR 66 (177)
T ss_pred EEEECchHHHHHHHHHHHhhc
Confidence 588999999999999998643
No 13
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=65.46 E-value=5.8 Score=27.90 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.1
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||..+..++
T Consensus 50 ~i~~Sp~~Ra~qTa~~l~~~~ 70 (153)
T cd07067 50 RIYSSPLKRAIQTAEIILEEL 70 (153)
T ss_pred EEEECcHHHHHHHHHHHHHhc
Confidence 578999999999999998877
No 14
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=64.58 E-value=6.5 Score=28.12 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=19.1
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|.||...||++||+.+...+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (152)
T TIGR00249 47 RILVSPFVRAEQTAEIVGDCL 67 (152)
T ss_pred EEEECCcHHHHHHHHHHHHHc
Confidence 688999999999999998876
No 15
>PRK03482 phosphoglycerate mutase; Provisional
Probab=64.05 E-value=6.5 Score=29.68 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||+.+...+
T Consensus 50 ~I~sSpl~Ra~qTA~~i~~~~ 70 (215)
T PRK03482 50 HIISSDLGRTRRTAEIIAQAC 70 (215)
T ss_pred EEEECCcHHHHHHHHHHHHhc
Confidence 688999999999999987654
No 16
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=59.24 E-value=8.6 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.6
Q ss_pred EEEeCCChhhHHHHHHHHcccC
Q psy5658 26 KFYSPDIDRCLMSAQLISQGLY 47 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gly 47 (196)
.|+||+..||++||+.+..++-
T Consensus 39 ~iysSpl~Ra~qTA~~i~~~~~ 60 (236)
T PTZ00123 39 VVYTSVLKRAIKTAWIVLEELG 60 (236)
T ss_pred EEEECChHHHHHHHHHHHHhcC
Confidence 5789999999999999998764
No 17
>PRK01295 phosphoglyceromutase; Provisional
Probab=56.65 E-value=10 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||..+...+
T Consensus 53 ~i~sSpl~Ra~qTA~~i~~~~ 73 (206)
T PRK01295 53 IAFTSALSRAQHTCQLILEEL 73 (206)
T ss_pred EEEeCCcHHHHHHHHHHHHHc
Confidence 478999999999999998655
No 18
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=56.10 E-value=10 Score=29.04 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=18.0
Q ss_pred EEEeCCChhhHHHHHHHHcc
Q psy5658 26 KFYSPDIDRCLMSAQLISQG 45 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~G 45 (196)
.|+||+..||++||..++.+
T Consensus 52 ~i~sSpL~Ra~qTA~~i~~~ 71 (228)
T PRK14116 52 QAYTSVLTRAIKTLHYALEE 71 (228)
T ss_pred EEEECChHHHHHHHHHHHHh
Confidence 58999999999999998764
No 19
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=54.91 E-value=11 Score=27.21 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=18.8
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|.||+..||.+||..+...+
T Consensus 47 ~i~sSp~~Ra~qTa~~l~~~~ 67 (159)
T PRK10848 47 RVLVSPYLRAEQTLEVVGECL 67 (159)
T ss_pred EEEECCHHHHHHHHHHHHHHh
Confidence 589999999999999997665
No 20
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=54.08 E-value=13 Score=27.76 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.4
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||..++.++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (199)
T PRK15004 49 LVLCSELERAQHTARLVLSDR 69 (199)
T ss_pred EEEECchHHHHHHHHHHHhcC
Confidence 489999999999999998653
No 21
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=53.50 E-value=13 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=18.4
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||..+..++
T Consensus 51 ~IysSpl~Ra~qTA~~i~~~~ 71 (247)
T PRK14115 51 VAYTSVLKRAIRTLWIVLDEL 71 (247)
T ss_pred EEEEcCCHHHHHHHHHHHHHc
Confidence 589999999999999997654
No 22
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=52.38 E-value=12 Score=27.88 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||..+..++
T Consensus 49 ~i~sSpl~Ra~qTA~~i~~~~ 69 (204)
T TIGR03848 49 AIVSSPLERCRETAEPIAEAR 69 (204)
T ss_pred EEEeCcHHHHHHHHHHHHHhc
Confidence 578999999999999998755
No 23
>PRK13463 phosphatase PhoE; Provisional
Probab=49.95 E-value=17 Score=27.27 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=16.8
Q ss_pred EEEeCCChhhHHHHHHHHc
Q psy5658 26 KFYSPDIDRCLMSAQLISQ 44 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~ 44 (196)
.|+||+..||++||..+..
T Consensus 51 ~i~sSpl~Ra~qTA~~i~~ 69 (203)
T PRK13463 51 AIYSSPSERTLHTAELIKG 69 (203)
T ss_pred EEEECCcHHHHHHHHHHHh
Confidence 5789999999999998864
No 24
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=49.71 E-value=16 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=17.9
Q ss_pred EEEeCCChhhHHHHHHHHcc
Q psy5658 26 KFYSPDIDRCLMSAQLISQG 45 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~G 45 (196)
.|+||+..||++||..++..
T Consensus 52 ~i~sSpL~Ra~~TA~~i~~~ 71 (228)
T PRK14119 52 VAFTSLLTRALDTTHYILTE 71 (228)
T ss_pred EEEeCccHHHHHHHHHHHHh
Confidence 58999999999999999764
No 25
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=49.65 E-value=15 Score=28.64 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=18.7
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||+.+..++
T Consensus 51 ~iysSpl~Ra~qTA~ii~~~~ 71 (245)
T TIGR01258 51 VAYTSLLKRAIHTLNIALDEL 71 (245)
T ss_pred EEEEcChHHHHHHHHHHHHhc
Confidence 589999999999999998654
No 26
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=47.03 E-value=18 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||.+||+.++.++
T Consensus 156 ~IysSPL~RA~qTAeiIa~~~ 176 (299)
T PTZ00122 156 AIYHSDMTRAKETAEIISEAF 176 (299)
T ss_pred EEEEcCcHHHHHHHHHHHHhC
Confidence 588999999999999998765
No 27
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=44.26 E-value=37 Score=25.26 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred CeEEEEeCCChhhHHHHHHHHcccC
Q psy5658 23 GNIKFYSPDIDRCLMSAQLISQGLY 47 (196)
Q Consensus 23 ~~i~irSt~~~Rt~~SA~a~l~Gly 47 (196)
....|+||+..||++||..++..+=
T Consensus 50 ~~~~i~sS~l~Ra~~TA~~~a~~~~ 74 (208)
T COG0406 50 GFDAIYSSPLKRAQQTAEPLAEELG 74 (208)
T ss_pred CCCEEEECchHHHHHHHHHHHHhcC
Confidence 3445699999999999999998764
No 28
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=44.03 E-value=20 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.9
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||++||+.++.++
T Consensus 221 ~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 221 AVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred EEEECChHHHHHHHHHHHHhc
Confidence 589999999999999998765
No 29
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=43.40 E-value=25 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=17.3
Q ss_pred EEEeCCChhhHHHHHHHHc
Q psy5658 26 KFYSPDIDRCLMSAQLISQ 44 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~ 44 (196)
.|+||+..||.+||+.+..
T Consensus 103 ~I~sSpa~Ra~qTAe~ia~ 121 (201)
T PRK15416 103 DLYSSNTVRTIQSATWFSA 121 (201)
T ss_pred EEEECCCHHHHHHHHHHhc
Confidence 6799999999999999865
No 30
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=42.33 E-value=22 Score=27.26 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=18.3
Q ss_pred EEEeCCChhhHHHHHHHHccc
Q psy5658 26 KFYSPDIDRCLMSAQLISQGL 46 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gl 46 (196)
.|+||+..||.+||..+..++
T Consensus 51 ~i~sSpl~Ra~~TA~~i~~~~ 71 (227)
T PRK14118 51 IAFTSVLTRAIKTCNIVLEES 71 (227)
T ss_pred EEEEeChHHHHHHHHHHHHhc
Confidence 589999999999999997643
No 31
>PRK01112 phosphoglyceromutase; Provisional
Probab=41.11 E-value=26 Score=26.89 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEEeCCChhhHHHHHHHHcc
Q psy5658 26 KFYSPDIDRCLMSAQLISQG 45 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~G 45 (196)
.|+||+..||++||+.++..
T Consensus 50 ~iysSpl~Ra~qTA~~i~~~ 69 (228)
T PRK01112 50 CIFTSTLVRSLMTALLAMTN 69 (228)
T ss_pred EEEEcCcHHHHHHHHHHHHh
Confidence 57999999999999998853
No 32
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=40.18 E-value=25 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=17.1
Q ss_pred EEEeCCChhhHHHHHHHHc
Q psy5658 26 KFYSPDIDRCLMSAQLISQ 44 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~ 44 (196)
.|+||+..||++||..++.
T Consensus 55 ~IysSpl~Ra~qTA~~i~~ 73 (249)
T PRK14120 55 VVYTSLLRRAIRTANLALD 73 (249)
T ss_pred EEEecChHHHHHHHHHHHH
Confidence 5899999999999998865
No 33
>PRK13462 acid phosphatase; Provisional
Probab=37.97 E-value=27 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.6
Q ss_pred EEEeCCChhhHHHHHHH
Q psy5658 26 KFYSPDIDRCLMSAQLI 42 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~ 42 (196)
.|+||+..||.+||+.+
T Consensus 56 ~i~sSpl~Ra~qTA~~i 72 (203)
T PRK13462 56 LVISSPRRRALDTAKLA 72 (203)
T ss_pred EEEECchHHHHHHHHHh
Confidence 58999999999999986
No 34
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=36.04 E-value=32 Score=26.36 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=16.6
Q ss_pred EEEeCCChhhHHHHHHHHc
Q psy5658 26 KFYSPDIDRCLMSAQLISQ 44 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~ 44 (196)
.|+||+..||++||..++.
T Consensus 52 ~i~sSpl~Ra~~TA~~i~~ 70 (230)
T PRK14117 52 LAFTSVLKRAIKTTNLALE 70 (230)
T ss_pred EEEECCcHHHHHHHHHHHH
Confidence 4789999999999998764
No 35
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=35.46 E-value=61 Score=17.77 Aligned_cols=21 Identities=33% Similarity=0.725 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHH-cCCCCCCCC
Q psy5658 129 NEVYQTLRIEFE-NGRQMPEWT 149 (196)
Q Consensus 129 ~~~~D~~~~~~~-~~~~~p~~~ 149 (196)
..|+..+...+. .+.++|.|+
T Consensus 20 T~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 20 THVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred hHHHHHHHHHHHHcCCCCCCcC
Confidence 345555555444 488999995
No 36
>PRK06193 hypothetical protein; Provisional
Probab=34.84 E-value=39 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.189 Sum_probs=15.8
Q ss_pred EEEeCCChhhHHHHHHHH
Q psy5658 26 KFYSPDIDRCLMSAQLIS 43 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l 43 (196)
.|.||+..||++||+.+.
T Consensus 98 ~V~sSpl~Ra~qTA~il~ 115 (206)
T PRK06193 98 KVISSPYCRAWETAQLAF 115 (206)
T ss_pred EEEECCcHHHHHHHHHHh
Confidence 478999999999999765
No 37
>PF13056 DUF3918: Protein of unknown function (DUF3918)
Probab=32.33 E-value=28 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHcccC
Q psy5658 33 DRCLMSAQLISQGLY 47 (196)
Q Consensus 33 ~Rt~~SA~a~l~Gly 47 (196)
+||+.|+.+|..|..
T Consensus 2 nk~mtSlla~GaG~a 16 (43)
T PF13056_consen 2 NKTMTSLLAFGAGAA 16 (43)
T ss_pred cHHHHHHHHHhHHHH
Confidence 588889999888864
No 38
>KOG0095|consensus
Probab=27.92 E-value=36 Score=24.62 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.9
Q ss_pred HHHHHcccCCCCCC
Q psy5658 39 AQLISQGLYPPSGV 52 (196)
Q Consensus 39 A~a~l~Glyp~~~~ 52 (196)
..-|-+|||||+..
T Consensus 24 vrrftqglfppgqg 37 (213)
T KOG0095|consen 24 VRRFTQGLFPPGQG 37 (213)
T ss_pred hhhhhccCCCCCCC
Confidence 35688999999754
No 39
>PF06116 RinB: Transcriptional activator RinB; InterPro: IPR009300 This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene [].
Probab=27.77 E-value=32 Score=19.85 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=10.7
Q ss_pred CchhHHHHHHHh-hcc
Q psy5658 1 MHYLGQSLRLRY-NGF 15 (196)
Q Consensus 1 ~~~lG~~lR~rY-~~f 15 (196)
||+||+++-+.+ ..+
T Consensus 14 mYELgK~i~~el~i~l 29 (53)
T PF06116_consen 14 MYELGKYITEELYIKL 29 (53)
T ss_pred HHHHHHHHHHHheeee
Confidence 588999987765 444
No 40
>PF07425 Pardaxin: Pardaxin; InterPro: IPR009990 This family consists of several Pardaxin proteins. Pardaxin, a 33-amino-acid pore-forming polypeptide toxin isolated from the Red Sea Moses sole Pardachirus marmoratus, has a helix-hinge-helix structure. This is a common structural motif found both in antibacterial peptides that can act selectively on bacterial membranes (e.g., cecropin), and in cytotoxic peptides that can lyse both mammalian and bacterial cells (e.g., melittin). Pardaxin possesses a high antibacterial activity with a significantly reduced haemolytic activity towards human red blood cells compared with melittin []. Pardaxin has also been found to have a shark repellent action [].; GO: 0005576 extracellular region; PDB: 1XC0_A 2KNS_A.
Probab=26.89 E-value=35 Score=16.93 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=16.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhcC
Q psy5658 174 MKRIKAGHLMFSAIDYCHISSTS 196 (196)
Q Consensus 174 ~~~l~~g~ll~~i~~~m~~~i~~ 196 (196)
+.++-.+||.+.++...-.++.|
T Consensus 6 ipkiissplfktllsavgsalss 28 (33)
T PF07425_consen 6 IPKIISSPLFKTLLSAVGSALSS 28 (33)
T ss_dssp HHHHCCTTTCHHHHHHHHHHCTT
T ss_pred hhHHHccHHHHHHHHHHHHHHhc
Confidence 56777888888888877666554
No 41
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=25.96 E-value=61 Score=23.68 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=19.8
Q ss_pred EEEeCCChhhHHHHHHHHcccC
Q psy5658 26 KFYSPDIDRCLMSAQLISQGLY 47 (196)
Q Consensus 26 ~irSt~~~Rt~~SA~a~l~Gly 47 (196)
.|.+|+.-||.|||..+...+-
T Consensus 50 ~VL~Spa~Ra~QTae~v~~~~~ 71 (163)
T COG2062 50 LVLVSPAVRARQTAEIVAEHLG 71 (163)
T ss_pred EEEeChhHHHHHHHHHHHHhhC
Confidence 4678999999999999999887
No 42
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.52 E-value=1e+02 Score=20.11 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCCCCcCHhhHHHHHHHHHHHHH
Q psy5658 106 KYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFE 140 (196)
Q Consensus 106 ~~~~~~~~l~~~~g~~~~~~~~~~~~~D~~~~~~~ 140 (196)
.+..+++.|.........++-++.++|.++.+...
T Consensus 18 aFRrLv~HL~~rsdvQNIDLMnLAgFCRNCLs~Wy 52 (104)
T COG3492 18 AFRRLVEHLQERSDVQNIDLMNLAGFCRNCLSNWY 52 (104)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 35677777777665533355666677766665443
No 43
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=25.23 E-value=93 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=18.7
Q ss_pred eEEEEeCCChhhHHHHHHHHcc
Q psy5658 24 NIKFYSPDIDRCLMSAQLISQG 45 (196)
Q Consensus 24 ~i~irSt~~~Rt~~SA~a~l~G 45 (196)
...|+||+..||++||+.+...
T Consensus 467 ~~~V~sSpl~Ra~~TA~~i~~~ 488 (664)
T PTZ00322 467 SFTVMSSCAKRCTETVHYFAEE 488 (664)
T ss_pred CcEEEcCCcHHHHHHHHHHHhc
Confidence 3479999999999999988653
No 44
>KOG4646|consensus
Probab=22.31 E-value=99 Score=22.20 Aligned_cols=30 Identities=23% Similarity=-0.088 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCChhhHHHHHHHHcccCCCC
Q psy5658 21 YYGNIKFYSPDIDRCLMSAQLISQGLYPPS 50 (196)
Q Consensus 21 ~~~~i~irSt~~~Rt~~SA~a~l~Glyp~~ 50 (196)
-|--|+++|+..+-|+.||..+++-|-++.
T Consensus 101 ~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 101 LPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred CceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 356789999999999999999999998875
No 45
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=20.78 E-value=1.3e+02 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=35.5
Q ss_pred hHHHHHHHhhcccccCCCCCeEEEEeCCCh---------hhHHHHHHHHcccCCC
Q psy5658 4 LGQSLRLRYNGFLKEEYYYGNIKFYSPDID---------RCLMSAQLISQGLYPP 49 (196)
Q Consensus 4 lG~~lR~rY~~fl~~~~~~~~i~irSt~~~---------Rt~~SA~a~l~Glyp~ 49 (196)
+...+++.+.+-++..++.+++.+.|+... +-+.-+.||+.||+-.
T Consensus 133 IAN~~~~vf~~~i~~im~vd~v~Ils~A~~~~~spvsP~~~~Ni~iaf~~Gl~~~ 187 (226)
T COG3944 133 IANSISEVFAKVIPEIMNVDNVSILSEAEASPSSPVSPKVMRNIVIAFLAGLAGA 187 (226)
T ss_pred HHHHHHHHHHHhhHhhcCcCceeeecccccCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 455666777677777899999999887555 6678899999999754
Done!