RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5658
(196 letters)
>gnl|CDD|215860 pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch
2). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches.The smaller branch 2 contains predominantly
eukaryotic proteins. The catalytic functions in members
include phytase, glucose-1-phosphatase and multiple
inositol polyphosphate phosphatase. The in vivo roles of
the mammalian acid phosphatases in branch 2 are not
fully understood, although activity against
lysophosphatidic acid and tyrosine-phosphorylated
proteins has been demonstrated.
Length = 327
Score = 87.9 bits (218), Expect = 5e-21
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 14/194 (7%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
LG+ LR RY G L + Y + S D +R L SAQ GL+PP G DN
Sbjct: 60 AFELGRYLRQRYVGLLPDGYPPSEVYIRSSDSNRTLASAQAFLAGLFPPEG---DIDNDL 116
Query: 61 KFFQPIPI----KSFDSSQDLIFNDGKSCPPYEKELN-KVLSREMADINAKYKDIY--EY 113
+QPIP+ + + +L+ SCP +++ L K + E+A + A Y +
Sbjct: 117 LDWQPIPVVTLPEVKKALANLLLLGYDSCPAFDESLVEKRVDPELAKLLAVYLEPIAKRL 176
Query: 114 VAYHTGRNITTLREVNEVYQTLRIEFEN--GRQMPEWTKQVFPSKLKALAGLYN--QVIF 169
G T +V + E P+ L+ L+ L +
Sbjct: 177 SQLLPGETNLTGLDVWALLDLCLFETNASDNSPFPDLFTGYDALHLEYLSDLEEYYGLSG 236
Query: 170 YNDKMKRIKAGHLM 183
++ ++ G L+
Sbjct: 237 IGPELAKLIGGPLL 250
>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
histidine acid phosphatases and phytases; contains a
His residue which is phosphorylated during the
reaction. Catalytic domain of HAP (histidine acid
phosphatases) and phytases (myo-inositol
hexakisphosphate phosphohydrolases). The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. Functions in
this subgroup include roles in metabolism, signaling,
or regulation, for example Escherichia coli
glucose-1-phosphatase functions to scavenge glucose
from glucose-1-phosphate and the signaling molecules
inositol 1,3,4,5,6-pentakisphosphate (InsP5) and
inositol hexakisphosphate (InsP6) are in vivo
substrates for eukaryotic multiple inositol
polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
phosphate from extracellular sources and are added to
animal feed while prostatic acid phosphatase (PAP) has
been used for many years as a serum marker for prostate
cancer. Recently PAP has been shown in mouse models to
suppress pain by functioning as an
ecto-5prime-nucleotidase. In vivo it dephosphorylates
extracellular adenosine monophosphate (AMP) generating
adenosine,and leading to the activation of A1-adenosine
receptors in dorsal spinal cord.
Length = 242
Score = 50.1 bits (120), Expect = 9e-08
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGN-IKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNV 59
LG+ R RY L Y + + S D R L SAQ GL+PP G
Sbjct: 27 AFELGRYFRQRYGELLLLHSYNRSDLYIRSSDSQRTLQSAQAFLAGLFPPDG-------- 78
Query: 60 GKFFQPIPIKSFDSSQDLIFN 80
+QPI + + +D + N
Sbjct: 79 ---WQPIAVHTIPEEEDDVSN 96
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 14 GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGK 61
GF YYY K+ SP + L+ A ++ GL PP G N W ++
Sbjct: 502 GFTPNRYYYYMWKYISPLVLLSLLVASVVQMGLSPP-GYNAWIEDKAT 548
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 36.4 bits (84), Expect = 0.006
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIW 55
GF YYY K+ SP L++A ++ GL PP G N W
Sbjct: 452 GFRPSRYYYYMWKYISPLCLLVLLTASIVQMGLSPP-GYNAW 492
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains
a His residue which is phosphorylated during the
reaction. Catalytic domain of a functionally diverse
set of proteins, most of which are phosphatases. The
conserved catalytic core of this domain contains a His
residue which is phosphorylated in the reaction. This
set of proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM,
and BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in
disease, for example erythrocyte BPGM deficiency is a
disease associated with a decrease in the concentration
of 2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 32.8 bits (75), Expect = 0.049
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIW 55
LG++LR RY F + YS + R + +A++I +GL+ V +
Sbjct: 34 ARELGKALRERYIKF---------DRIYSSPLKRAIQTAEIILEGLFEGLPVEVD 79
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 31.0 bits (70), Expect = 0.44
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 14 GFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIW 55
GF +Y+ K+ SP LM+A +I G+ PP G + W
Sbjct: 502 GFRPYSFYFYTWKYVSPICMAVLMTASIIQLGVSPP-GYSAW 542
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 336
Score = 29.5 bits (66), Expect = 1.0
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 50 SGVNIWNDN---VGKFFQPIPIKSFDSSQDLI-FND--GKSCPPYEKELNKV---LSREM 100
SGVN+ ++ +G+ IP++ + I ND G+ PP E E N L+RE+
Sbjct: 255 SGVNVGEEDAAALGRLLAGIPVRL-----NPIAVNDATGRYRPPDEDEWNAFRDALAREL 309
>gnl|CDD|129864 TIGR00782, ccoP, cytochrome c oxidase, cbb3-type, subunit III.
This model describes a di-heme subunit of approximately
26 kDa of the cbb3 type copper and heme-containing
cytochrome oxidase [Energy metabolism, Electron
transport].
Length = 285
Score = 27.2 bits (60), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 141 NGRQMPEWTKQVFPSKLKALA 161
G MP W ++ +++KALA
Sbjct: 255 RGGVMPAWGPRLSEAQIKALA 275
>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase, C-terminal
subunit. This model represents one of two
subunits/domains of the bifunctional
isomerase/decarboxylase involved in
4-hydroxyphenylacetate degradation. In E. coli and some
other species this enzyme is encoded by a single
polypeptide containing both this domain and the closely
related N-terminal domain (TIGR02305). In other species
such as Pasteurella multocida these domains are found as
two separate proteins (usually as tandem genes).
Together, these domains carry out the decarboxylation of
5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to
2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent
isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Length = 245
Score = 27.1 bits (60), Expect = 5.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 YEKELNKVLSREMADINAKYKDIYEYVAYHTGRNITTLREVNEVY 132
YE EL V+ + N K +D +YV +T N +R+ E Y
Sbjct: 95 YECELAVVVGKTAK--NVKREDAMDYVLGYTIANDYAIRDYLENY 137
>gnl|CDD|215196 PLN02346, PLN02346, histidine biosynthesis bifunctional protein
hisIE.
Length = 271
Score = 27.1 bits (60), Expect = 5.5
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 123 TTLREVNEVYQTLRIEFENGRQMPEWTKQVFP------SKLKALAGLYNQVIFYNDKMKR 176
TTL + E Q + E P WTK++ SK++ AG Q + N+ +R
Sbjct: 162 TTLYSLEETIQQRKEEAVPQGGKPSWTKRLLQDPELLCSKIREEAGELCQTLEENEGKER 221
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 27.1 bits (60), Expect = 6.4
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 28/109 (25%)
Query: 76 DLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNITTLREVNEVYQTL 135
L+ G P Y L RE+ +I + E RN L + +E + L
Sbjct: 455 RLLKMRGDENPYY-------LHRELGEI------MTENCG--VSRNNEKLLKTDEKIREL 499
Query: 136 RIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYNDKMKR-IKAGHLM 183
R F +P TK+ NQV+ + ++ ++ LM
Sbjct: 500 RERFWKNIDIPGTTKE------------SNQVLEFARRVADYLELAELM 536
>gnl|CDD|183329 PRK11829, PRK11829, biofilm formation regulator HmsP; Provisional.
Length = 660
Score = 27.2 bits (60), Expect = 7.5
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 129 NEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLY 164
N++ Q L F R +P W K+VF ++ LY
Sbjct: 80 NQI-QVLHANFPTERPIPHWAKRVFSLPVQITVPLY 114
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 27.0 bits (61), Expect = 8.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 89 EKELNKVLSREMADINAKYKD 109
E++L K++ +E+ K+ D
Sbjct: 463 ERKLRKLIKKELKADAKKFGD 483
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,208,587
Number of extensions: 944496
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 24
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)