RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5658
(196 letters)
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 124 bits (312), Expect = 1e-34
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
+ LG+ +R RY FL E Y + + S D+DR LMSA L+PP GV+IWN +
Sbjct: 46 HYELGEYIRKRYRKFLNESYKHEQVYIRSTDVDRTLMSAMTNLAALFPPEGVSIWNPILL 105
Query: 61 KFFQPIPIKSFDSSQD-LIFNDGKSCPPYEKELNKVL-SREMADINAKYKDIYEYVAYHT 118
+QPIP+ + S+D L++ ++CP +++ ++ L S E YKD + +
Sbjct: 106 --WQPIPVHTVPLSEDQLLYLPFRNCPRFQELESETLKSEEFQKRLHPYKDFIATLGKLS 163
Query: 119 GRNITTLREV-NEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIF---YNDKM 174
G + L + ++VY L E + +P W + +KL+ L+ L ++ +
Sbjct: 164 GLHGQDLFGIWSKVYDPLYCESVHNFTLPSWATEDTMTKLRELSELSLLSLYGIHKQKEK 223
Query: 175 KRIKAGHLM 183
R++ G L+
Sbjct: 224 SRLQGGVLV 232
>3it3_A Acid phosphatase; HAP, hydrolase; HET: 3AM; 1.50A {Francisella
tularensis subsp} PDB: 2glc_A 2glb_A 2gla_A 3it0_A*
3it1_A* 3it2_A 2p36_A*
Length = 342
Score = 122 bits (308), Expect = 3e-34
Identities = 50/191 (26%), Positives = 74/191 (38%), Gaps = 11/191 (5%)
Query: 1 MHYLGQSLRLRY---NGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWND 57
+ LG LR RY G L E Y +I S +R ++SAQ + GLYP + D
Sbjct: 48 EYNLGLQLRKRYIDKFGLLPEHYVDQSIYVLSSHTNRTVVSAQSLLMGLYPAGTGPLIGD 107
Query: 58 NVGKF---FQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVL--SREMADINAKYKDIYE 112
FQPIPI + + LI Y L K + S E + + +
Sbjct: 108 GDPAIKDRFQPIPIMTLSADSRLIQF---PYEQYLAVLKKYVYNSPEWQNKTKEAAPNFA 164
Query: 113 YVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 172
G I+ L +V V L + +G+ +P+ Q ++ AL F +
Sbjct: 165 KWQQILGNRISGLNDVITVGDVLIVAQAHGKPLPKGLSQEDADQIIALTDWGLAQQFKSQ 224
Query: 173 KMKRIKAGHLM 183
K+ I G L
Sbjct: 225 KVSYIMGGKLT 235
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 84.3 bits (207), Expect = 2e-19
Identities = 30/218 (13%), Positives = 64/218 (29%), Gaps = 35/218 (16%)
Query: 1 MHYLGQSLRLRY--NGFLKEEYYY--GNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN 56
+ YLG R R +G L ++ G + + +R + + + GL P + +
Sbjct: 55 IAYLGHYQRQRLVADGLLAKKGCPQSGQVAIIADVDERTRKTGEAFAAGLAPDCAITVHT 114
Query: 57 DNVGK----FFQPIPIKSFDSSQDL------------IFNDGKSCPPYEKELNKVL---- 96
F P+ I + +EL +VL
Sbjct: 115 QTDTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQ 174
Query: 97 -----SREMADINAKYKDIYEYVAYHTGRNITT---LREVNEVYQTLRIEFENGRQMPEW 148
RE D + + N++ + + + + ++ G P W
Sbjct: 175 SNLCLKREKQDESCSLTQALPSELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGW 234
Query: 149 TKQVFPSKLKALAG---LYNQVIFYNDKMKRIKAGHLM 183
+ + L ++ ++ R +A L+
Sbjct: 235 GRITDSHQWNTLLSLHNAQFYLLQRTPEVARSRATPLL 272
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 83.4 bits (205), Expect = 3e-19
Identities = 30/204 (14%), Positives = 63/204 (30%), Gaps = 21/204 (10%)
Query: 1 MHYLGQSLRLRY--NGFLKEEYY-YGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN- 56
+ G+ Y G L+ +I + + R +AQ + G +P GV I
Sbjct: 64 VVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYA 123
Query: 57 -DNVGKFFQPIPIKSF----DSSQDLIFNDGKSCPPYEKELNKVLSR--EMADINAKYKD 109
+ FQ + + + L + + K
Sbjct: 124 NGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPTIQLLKQAVCQADKPCP 183
Query: 110 IYEY-----VAYHTGRNITTLREVNEVYQTLRIEFENGRQMPE--WTKQVFPSKLKALAG 162
I++ + I+ L + + +TLR+ + + + W K S++ AL
Sbjct: 184 IFDTPWRVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKIAQASQITALLP 243
Query: 163 LYNQ---VIFYNDKMKRIKAGHLM 183
L + + + + L+
Sbjct: 244 LLTENYDLSNDVLYTAQKRGSVLL 267
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 81.5 bits (200), Expect = 1e-18
Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 29/211 (13%)
Query: 1 MHYLGQSLRLRY--NGFLKEEYYY--GNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWN 56
Y+G +R G +K ++ Y+ + R + +AQ G +P V + +
Sbjct: 55 EVYMGHYMREWLAQQGMVKTGECPAADSVYAYANSLQRTVATAQFFITGAFPGCDVPVHH 114
Query: 57 -DNVGKF---FQPIPIKSFDSSQDLIFNDGKSCP------PYEKELNKVL---------S 97
+ +G F P+ + ++ ++ K L ++
Sbjct: 115 QEKMGTMDPTFNPVITDNSPEFREKALKAMETERQKMQLTESYKLLEQMTNYADSPSCKE 174
Query: 98 REMADINAKYKDIYEYVAYHTGRNITTLREVNEVYQTLRIEFENGRQMPE--WTKQVFPS 155
+++ + A KD + L+ N + +++ G + W +
Sbjct: 175 KKVCSL-ADAKDTFSADYEKEPGVSGPLKVGNSLVDAFTLQYYEGFPADQVAWGEIKTDQ 233
Query: 156 KLKALAG---LYNQVIFYNDKMKRIKAGHLM 183
+ + L+ Y +F + ++ + A L+
Sbjct: 234 QWRVLSKLKNGYQDSLFTSTEVAQNVAKPLV 264
>3k4q_A 3-phytase A; PHYA, 3-phosphotase, MYO-inositol hexakis phosphate
phosphohydrolase, 37288-11-2, MYO-inositol hexakis
sulfate, 62-1; HET: IHS NAG; 2.20A {Aspergillus niger}
PDB: 3k4p_A* 1ihp_A
Length = 444
Score = 58.8 bits (141), Expect = 1e-10
Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 6/138 (4%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
+ G RY + + S R + S + +G +
Sbjct: 113 LVNSGIKFYQRYESLTRNIVPF----IRSSGSSRVIASGKKFIEGFQSTKLKDPRAQPGQ 168
Query: 61 KFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGR 120
+ + S SS + + G + EL + I + +
Sbjct: 169 SSPKIDVVISEASSSNNTLDPGTCTVFEDSELADTVEANFTAT--FVPSIRQRLENDLSG 226
Query: 121 NITTLREVNEVYQTLRIE 138
T EV + +
Sbjct: 227 VTLTDTEVTYLMDMCSFD 244
>2gfi_A Phytase; hydrolase; HET: NAG; 2.29A {Debaryomyces castellii}
Length = 458
Score = 57.2 bits (137), Expect = 4e-10
Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 13/172 (7%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
G + R +Y + ++ + R ++Q ++G N
Sbjct: 137 AMKHGIAFRTKYGELFDTND---TLPVFTSNSGRVYQTSQYFARGFMGDDFSNDTVK--- 190
Query: 61 KFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGR 120
I + + L D C Y + N + E K + + A + G
Sbjct: 191 --TNIISEDADMGANSLTPRD--GCFNYNENANTAIVDEYTTEYLT-KALNRFKASNPGL 245
Query: 121 NITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 172
NIT +V+ ++ E N + + + + +Y++
Sbjct: 246 NITE-DDVSNLFGYCAYEL-NVKGASPMCDIFTNEEFIQYSYSVDLDDYYSN 295
>1qwo_A Phytase; alpha barrel, beta sandwich, orthogonal bundle,
glycoprotein phosphohistidine, hydrolase; HET: NEP NAG;
1.50A {Aspergillus fumigatus} SCOP: c.60.1.2 PDB:
1skb_A* 1sk8_A* 1ska_A* 1sk9_A*
Length = 442
Score = 55.3 bits (132), Expect = 2e-09
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 13/177 (7%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
+ G RY + + + DR + S + +G + N
Sbjct: 112 LVNSGIKFYQRYKALARSVVPF----IRASGSDRVIASGEKFIEGFQQAKLADPGATN-- 165
Query: 61 KFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKY-KDIYEYVAYHTG 119
+ I + +S D C +E A+ A + DI H
Sbjct: 166 RAAPAISVIIPESETFNNTLDHGVCTKFEASQLG--DEVAANFTALFAPDIRARAEKHLP 223
Query: 120 RNITTLREVNEVYQTLRIEF----ENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 172
T +V + + + Q+ + + ++ K L + +Y
Sbjct: 224 GVTLTDEDVVSLMDMCSFDTVARTSDASQLSPFCQLFTHNEWKKYNYLQSLGKYYGY 280
>1qfx_A Protein (PH 2.5 acid phosphatase); phosphomonoesterase, hydrolase;
HET: NAG BMA MAN; 2.40A {Aspergillus niger} SCOP:
c.60.1.2
Length = 460
Score = 49.5 bits (117), Expect = 2e-07
Identities = 20/172 (11%), Positives = 45/172 (26%), Gaps = 17/172 (9%)
Query: 1 MHYLGQSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVG 60
+ G + RY E F+S R + +A+ +G + +
Sbjct: 126 AYNHGNDYKARYGHLWNGETVV---PFFSSGYGRVIETARKFGEGFFGYNYSTNAA---- 178
Query: 61 KFFQPIPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGR 120
I + L P + + ++ + ++K +
Sbjct: 179 --LNIISESEVMGADSL-------TPTCDTDNDQTTCDNLTYQLPQFKVAAARLNSQNPG 229
Query: 121 NITTLREVNEVYQTLRIEFENGRQMPEWTKQVFPSKLKALAGLYNQVIFYND 172
T +V + E N R W + + + + +Y
Sbjct: 230 MNLTASDVYNLMVMASFEL-NARPFSNWINAFTQDEWVSFGYVEDLNYYYCA 280
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 75/222 (33%)
Query: 4 LGQSLRLRYNGFLKEEYY-YGNIKFYSPDIDRCLMSAQL---ISQGLYP-----PSGVNI 54
+ +S+R +G + + + N + I+ L L + ++ P +I
Sbjct: 333 IAESIR---DGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 55 --------WNDNVGKFFQPIPIKSFDSSQDLIFNDGKSC--------------PPYEKEL 92
W D + + K S L+ K E L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 93 NKVL--------SREMADINAKYKD--IYEYVAYH--TGRNITTLREVNEVYQTLRIEFE 140
++ + + + D+ Y D Y ++ +H + + V+ R
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---- 501
Query: 141 NGRQMPEWTKQVFPSKLKA----------LAGLYNQVIFYND 172
+ +Q K++ + Q+ FY
Sbjct: 502 -------FLEQ----KIRHDSTAWNASGSILNTLQQLKFYKP 532
Score = 34.1 bits (77), Expect = 0.027
Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 42/126 (33%)
Query: 64 QP-IPIKSFDSSQDLIFNDGKSCPPYE-------KELNKVLSREMADINAKYKDIYEYVA 115
QP + + + +D ++ND + Y +L + L E+ + V
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPA--------KNVL 154
Query: 116 YH----TGRNITTLREVNEVYQTLRIEFENGRQMPEWTKQVF----------PSKLKALA 161
+G+ T + +V + +++ +M ++F + L+ L
Sbjct: 155 IDGVLGSGK--TWV--ALDVCLSYKVQ----CKMDF---KIFWLNLKNCNSPETVLEMLQ 203
Query: 162 GLYNQV 167
L Q+
Sbjct: 204 KLLYQI 209
Score = 28.3 bits (62), Expect = 1.9
Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 63/183 (34%)
Query: 6 QSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQP 65
S++ LK + Y + CL L+ N+ N
Sbjct: 228 HSIQAELRRLLKSKPY-----------ENCL----LVLL--------NVQNAKA------ 258
Query: 66 IPIKSFDSSQDLIFNDGKSCPPYEKELNKVLSREMADINAKYKDIYEYVAYHTGRNITTL 125
+F+ SC K L + +R + +++ T
Sbjct: 259 --WNAFNL----------SC----KIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 126 REVNEVY-QTLRIEFENGRQMPEWTKQVFPSKLKALAGL----------YNQVIFYNDKM 174
EV + + L + +P P +L +A + V DK+
Sbjct: 301 DEVKSLLLKYLDCRPQ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKL 355
Query: 175 KRI 177
I
Sbjct: 356 TTI 358
Score = 28.3 bits (62), Expect = 1.9
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 99 EMADINAKYKDIYE-----YVA----YHTG---RNITTLREVNEVY-------QTLRIEF 139
E + +YKDI +V ++I + E++ + TLR+ F
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-F 68
Query: 140 ENGRQMPEWTKQVF 153
E Q F
Sbjct: 69 WTLLSKQEEMVQKF 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.014
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 24/48 (50%)
Query: 6 QSLRLRYNGFLKEEYYYGNIKFYSPDIDRCLMSAQLISQGLYPPSGVN 53
Q+L+ K + ++K Y+ D SA P +
Sbjct: 20 QALK-------KLQ---ASLKLYADD------SA--------PALAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.032
Identities = 42/244 (17%), Positives = 68/244 (27%), Gaps = 102/244 (41%)
Query: 5 GQSLRLRYNGFLKEEYYYGNIKFYS--PDIDRCLMS---------------AQ------- 40
G+ +R Y+ + E G +K +I+ S Q
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 41 ------LISQGLYPP------------------SGVNIWNDNVGKFFQPIPIKSFDSSQD 76
L S+GL P + V S +S +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV----------M------SIESLVE 1784
Query: 77 LIFNDGK---SCPPYEKELNKVLSREMADIN----------AKYKDIYEYVAYHTGRNIT 123
++F G P ++ M IN + + E V TG +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYG--MIAINPGRVAASFSQEALQYVVERVGKRTGWLV- 1841
Query: 124 TLRE-VNEVYQTLRIEFENGRQMPEWTKQVFPS-KLKALAGLYNQVIFYNDKMKRIKAGH 181
E VN Y N Q + L+AL + N V+ + K+++I
Sbjct: 1842 ---EIVN--Y--------NVENQ-----QYVAAGDLRALDTVTN-VLNFI-KLQKIDIIE 1881
Query: 182 LMFS 185
L S
Sbjct: 1882 LQKS 1885
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl
group, riken structural genomics/proteomi initiative,
RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Length = 96
Score = 27.0 bits (60), Expect = 1.5
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 32 IDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFN 80
+D+ L+ A G+ P V+I++ G + S + N
Sbjct: 4 VDQDLLDAA----GILPFEQVDIYDITNGARLTTYALPGERGSGVIGIN 48
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 27.8 bits (63), Expect = 1.7
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 4/23 (17%)
Query: 76 DLIFNDGKSCPPYEKELNKVLSR 98
+ F PPY +L +
Sbjct: 112 TVAFMA----PPYAMDLAALFGE 130
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 26.2 bits (58), Expect = 7.9
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 25 IKFYSPDIDRCLMSAQLISQGLYPPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFND 81
I+ + D+ R L Q L P I +D + + + I D
Sbjct: 198 IELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILED 254
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein,
echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis
SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Length = 323
Score = 26.2 bits (57), Expect = 8.8
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 48 PPSGVNIWNDNVGKFFQPIPIKSFDSSQDLIFNDGKSCPPYEK 90
S + N V + + FD+ +L +DG PP+++
Sbjct: 187 KVSIEGVTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQR 229
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 25.2 bits (56), Expect = 9.9
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 97 SREMADINAKYKDIYEYVAYHTGRNITTLR----EVNEV---YQTLRIEFENGRQM 145
+R + + Y+ YE + GR+ LR E++E+ Q LR E +N ++
Sbjct: 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.417
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,147,783
Number of extensions: 178742
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 27
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)