BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5660
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
ELA K++GN FK Y A+ +Y E +K + NA LY+NRAA L ++
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRA 66
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157
L DC ++L + K +R A CL ++++ ++ L+ +P++ + +C+
Sbjct: 67 LDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+LA K++GN F+ Y A+ +YTE +K N +A+LY+NRAA L ++
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKDAKLYSNRAACYTKLLEFQLA 69
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129
L DC+ ++L+P + K R A L +K +
Sbjct: 70 LKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104
+ EGN FKC Y A+ YT+ L + D A L+ NRAA + L++Y T+
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFE 130
A++ K R +Q L L + +
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLD 116
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K EGN K + A+ Y + +++ N NA + NRAA+ L NY +
Sbjct: 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGAVQ 67
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
DC+ A+ + P Y K R L L K + + L+ +P + T
Sbjct: 68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A KD+GN F+ KY +AI Y L++K + Y+N +A + + + +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-----EDPVFYSNLSACYVSVGDLKKVVE 60
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132
AL+LKPDY KV LR A L KF D
Sbjct: 61 MSTKALELKPDYSKVLLRRASANEGLGKFADA 92
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCL-FHLKKFEDCTH 134
N+ +Y +R NF L+NY D A +L P+ +P ++L CL + KF+DC
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL---ACLAYRENKFDDCET 359
Query: 135 LCDELLKENP 144
L E ++ P
Sbjct: 360 LFSEAKRKFP 369
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K + N FK Y NAI Y++ +++ N NA Y NR+ + + Y L
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALG 61
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
D A++L Y K R A L KF + ++K P D
Sbjct: 62 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 31 DPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNF 90
DP + + A K + N FK Y NAI Y++ +++ N NA Y NR+ +
Sbjct: 11 DPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYL 66
Query: 91 FLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ Y L D A++L Y K R A L KF + ++K P D
Sbjct: 67 RTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104
K++GN +A+ Y+E +K+ + N LY+NR+A+ +Y+ D
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141
+ LKPD+ K R A L L +FE+ +E LK
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
EEL T + N FK Y NAI Y++ +++ N NA Y NR+ + + Y
Sbjct: 13 AEELKT----QANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYG 64
Query: 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
L D A++L Y K R A L KF + ++K P D
Sbjct: 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC--LFHLKKFE 130
Y RAASN L +R+ L D + +K+KP K++ +C + K FE
Sbjct: 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 134
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106
EG F + + NA+ YTE +K D A+ Y+NRAA+ L ++ + DC A+
Sbjct: 10 EGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAI 65
Query: 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
+ P++ + +R A +K++ D
Sbjct: 66 EKDPNFVRAYIRKATAQIAVKEYASALETLD 96
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106
EG F + + NA+ YTE +K D A+ Y+NRAA+ L ++ + DC A+
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAI 200
Query: 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
+ P++ + +R A +K++ D
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLD 231
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95
TPE + K EGN +Y AI YT+ L I A N +NRAA+ +
Sbjct: 8 TPE--SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQH 61
Query: 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132
D ++A + P Y K R F + ++
Sbjct: 62 EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGA 98
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 11 FPGEGEEMSPLVEGLQQ--------LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAII 62
FP S L LQQ + Y A Y + GN + + A+
Sbjct: 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 98
Query: 63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122
YT ++I A D ++ L + S N + + ALKLKPD+P A C
Sbjct: 99 CYTRAIQINPAFADAHSNLASIHKDSG----NIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 123 L 123
L
Sbjct: 155 L 155
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K++GN F KY A Y + N + A Y NRA ++ L
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAI----TRNPLVAVYYTNRALCYLKMQQPEQALA 59
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
DC+ AL+L K QC ++ +++
Sbjct: 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN 94
N + A KD GN +K + A ++Y + +++ + N YNN+AA F K
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKK 57
Query: 95 YRSCLTDCQIALKL 108
+ C+ C+ A+++
Sbjct: 58 FAECVQFCEKAVEV 71
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------- 91
E A K++G FK KY A+I Y G + + + ++A+ +F
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQY--GKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 92 ------LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
L+ Y + C AL L K R + + +FE +++L+ NP
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 146 DSTVIDLRTSCINKHKE 162
+ + C K KE
Sbjct: 384 NKAARLQISMCQKKAKE 400
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K++GN F KY A Y + N + A Y NRA ++ L
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAI----TRNPLVAVYYTNRALCYLKMQQPEQALA 64
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
DC+ AL+L K QC ++ +++
Sbjct: 65 DCRRALELDGQSVKAHFFLGQCQLEMESYDE 95
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------- 91
E A K++G FK KY A+I Y G + + + ++A+ +F
Sbjct: 266 EQAAIVKEKGTVYFKGGKYVQAVIQY--GKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 92 ------LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
L+ Y + C AL L K R + + +FE +++L+ NP
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 146 DSTVIDLRTSCINKHKE 162
+ C K KE
Sbjct: 384 NKAARLQIFMCQKKAKE 400
>pdb|2G9H|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin I (Sei) In
Complex With A Human Mhc Class Ii Molecule
Length = 218
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 255 FDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNG--KPQRVPTTSTL-GEVLTNPKYV 310
F + + ++ SES WDE K+ +L I+ D NG K + + +TL G+ L + + +
Sbjct: 37 FSTGINDLISESNNWDEISKFKGKKLDIFGIDYNGPCKSKYMYGGATLSGQYLNSARKI 95
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL-----YNNRAASNFFLKNYRSCL 99
K++GN FK YR A + C D + AQ Y+N+A + L Y +
Sbjct: 8 KEQGNSLFKQGLYREA---------VHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58
Query: 100 TDCQIALKLKPDYPKVKLRA 119
CQ L+ V +R+
Sbjct: 59 QMCQQGLRYTSTAEHVAIRS 78
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL-YNNRAASNFFLKNYRSCL 99
A K+ GN F + AI Y +++ D N + Y+N +A + +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNEPVFYSNISACYISTGDLEKVI 79
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132
AL++KPD+ K LR A L F D
Sbjct: 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDA 112
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL-YNNRAASNFFLKNYRSCL 99
A K+ GN F + AI Y +++ D N + Y+N +A + +
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-----DPNEPVFYSNISACYISTGDLEKVI 75
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132
AL++KPD+ K LR A L F D
Sbjct: 76 EFTTKALEIKPDHSKALLRRASANESLGNFTDA 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,353,698
Number of Sequences: 62578
Number of extensions: 442513
Number of successful extensions: 1011
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 50
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)