Query psy5660
Match_columns 337
No_of_seqs 350 out of 2715
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:23:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0551|consensus 100.0 5.5E-79 1.2E-83 547.4 25.8 333 1-334 42-383 (390)
2 KOG0553|consensus 99.9 1.1E-23 2.4E-28 189.1 13.5 138 19-160 55-196 (304)
3 KOG4234|consensus 99.9 1.3E-20 2.7E-25 160.1 17.5 164 37-226 91-255 (271)
4 KOG0550|consensus 99.8 5.1E-20 1.1E-24 171.0 13.0 173 22-197 224-403 (486)
5 KOG0543|consensus 99.8 1.6E-18 3.4E-23 161.7 16.6 127 37-163 204-341 (397)
6 KOG0548|consensus 99.8 8.3E-19 1.8E-23 167.6 14.1 117 39-159 356-472 (539)
7 KOG4648|consensus 99.7 5.2E-18 1.1E-22 154.5 10.0 117 39-159 95-211 (536)
8 KOG0547|consensus 99.7 6.2E-17 1.3E-21 153.2 14.5 131 18-157 96-228 (606)
9 KOG0548|consensus 99.7 3.3E-17 7.1E-22 156.8 11.4 113 41-157 2-114 (539)
10 PRK15359 type III secretion sy 99.7 2.2E-15 4.7E-20 125.7 17.4 128 19-159 11-138 (144)
11 PLN03088 SGT1, suppressor of 99.7 1.9E-15 4.1E-20 144.3 16.3 116 41-160 2-117 (356)
12 KOG4642|consensus 99.6 5.3E-15 1.1E-19 129.0 10.3 119 37-159 6-129 (284)
13 KOG4626|consensus 99.6 8.8E-15 1.9E-19 142.0 12.5 156 27-192 244-402 (966)
14 KOG0376|consensus 99.6 4.6E-15 9.9E-20 141.1 7.2 118 40-161 3-120 (476)
15 TIGR02552 LcrH_SycD type III s 99.6 1.7E-13 3.8E-18 112.1 15.5 123 26-158 8-130 (135)
16 KOG0624|consensus 99.5 1.7E-13 3.8E-18 125.2 11.8 174 22-197 244-424 (504)
17 TIGR00990 3a0801s09 mitochondr 99.5 8.1E-13 1.8E-17 135.1 18.2 107 36-147 122-228 (615)
18 PRK15363 pathogenicity island 99.5 1.7E-12 3.6E-17 108.1 16.1 114 39-156 33-146 (157)
19 PRK11189 lipoprotein NlpI; Pro 99.5 2.1E-12 4.5E-17 120.5 18.0 124 19-148 43-167 (296)
20 KOG0545|consensus 99.5 1.5E-12 3.3E-17 114.2 15.0 112 38-149 175-300 (329)
21 PRK10370 formate-dependent nit 99.5 1.7E-12 3.6E-17 114.0 14.3 128 18-155 55-186 (198)
22 KOG4626|consensus 99.4 1.3E-12 2.8E-17 127.1 12.2 115 39-157 386-500 (966)
23 TIGR00990 3a0801s09 mitochondr 99.4 5.2E-11 1.1E-15 121.8 20.3 117 39-159 329-445 (615)
24 PRK12370 invasion protein regu 99.3 8.4E-11 1.8E-15 118.9 18.8 126 24-159 327-453 (553)
25 PF13414 TPR_11: TPR repeat; P 99.3 6.7E-12 1.5E-16 90.7 7.7 66 41-110 3-69 (69)
26 TIGR02795 tol_pal_ybgF tol-pal 99.3 7.9E-11 1.7E-15 93.4 14.0 111 41-152 2-115 (119)
27 PRK09782 bacteriophage N4 rece 99.3 8.9E-11 1.9E-15 124.7 17.6 115 41-159 609-723 (987)
28 PRK12370 invasion protein regu 99.3 1.9E-10 4.2E-15 116.2 18.6 117 26-152 286-411 (553)
29 PF13414 TPR_11: TPR repeat; P 99.3 1.5E-11 3.3E-16 88.8 7.7 67 78-144 2-69 (69)
30 PRK02603 photosystem I assembl 99.2 3E-10 6.6E-15 97.3 14.6 111 35-146 29-153 (172)
31 PRK15359 type III secretion sy 99.2 3.8E-10 8.2E-15 94.0 14.1 93 60-159 12-104 (144)
32 cd00189 TPR Tetratricopeptide 99.2 2.7E-10 5.8E-15 84.4 12.0 99 43-145 2-100 (100)
33 PF12895 Apc3: Anaphase-promot 99.2 4.7E-11 1E-15 90.0 7.6 83 54-139 2-84 (84)
34 TIGR02521 type_IV_pilW type IV 99.2 2.2E-09 4.8E-14 93.9 18.3 113 41-157 65-179 (234)
35 KOG0624|consensus 99.2 3.9E-10 8.5E-15 103.5 13.4 109 39-151 36-144 (504)
36 PLN02789 farnesyltranstransfer 99.2 5.3E-10 1.2E-14 105.1 14.8 116 39-158 69-187 (320)
37 TIGR02521 type_IV_pilW type IV 99.2 3E-09 6.4E-14 93.1 18.7 116 38-157 28-145 (234)
38 KOG1155|consensus 99.2 1.6E-09 3.5E-14 102.8 17.3 126 24-159 353-478 (559)
39 KOG1126|consensus 99.2 8.6E-11 1.9E-15 115.6 9.0 117 39-159 419-535 (638)
40 PRK15179 Vi polysaccharide bio 99.1 2.3E-09 5.1E-14 110.1 19.1 126 41-170 86-214 (694)
41 PRK09782 bacteriophage N4 rece 99.1 1.5E-09 3.2E-14 115.5 17.8 108 47-159 582-689 (987)
42 PRK10370 formate-dependent nit 99.1 1.9E-09 4.1E-14 94.6 15.3 102 54-159 52-156 (198)
43 PRK11189 lipoprotein NlpI; Pro 99.1 2.7E-09 5.8E-14 99.6 16.8 105 55-159 40-144 (296)
44 CHL00033 ycf3 photosystem I as 99.1 4.2E-09 9E-14 89.8 16.2 110 37-147 31-154 (168)
45 TIGR03302 OM_YfiO outer membra 99.1 6.3E-09 1.4E-13 93.3 17.9 118 38-156 30-158 (235)
46 KOG1155|consensus 99.1 2.3E-09 5.1E-14 101.8 15.5 110 46-159 335-444 (559)
47 COG3063 PilF Tfp pilus assembl 99.1 5.8E-09 1.3E-13 91.3 16.5 102 36-141 30-131 (250)
48 KOG1126|consensus 99.1 1.4E-09 3E-14 107.2 13.4 121 26-156 446-566 (638)
49 COG3063 PilF Tfp pilus assembl 99.1 3.3E-09 7.1E-14 92.8 14.2 121 26-157 60-183 (250)
50 KOG0547|consensus 99.1 3E-09 6.5E-14 101.6 14.9 113 38-154 323-435 (606)
51 PRK15331 chaperone protein Sic 99.1 3.7E-09 8.1E-14 88.6 13.6 108 37-149 33-140 (165)
52 PF13432 TPR_16: Tetratricopep 99.1 6.9E-10 1.5E-14 79.1 7.7 64 84-147 2-65 (65)
53 PRK15174 Vi polysaccharide exp 99.1 5.5E-09 1.2E-13 107.7 17.4 113 40-156 245-361 (656)
54 KOG1125|consensus 99.1 4.2E-10 9E-15 109.3 8.2 103 39-145 428-530 (579)
55 PRK15174 Vi polysaccharide exp 99.1 1E-08 2.3E-13 105.6 19.0 111 45-159 216-330 (656)
56 TIGR02552 LcrH_SycD type III s 99.0 8E-09 1.7E-13 84.3 14.6 94 62-159 4-97 (135)
57 KOG1308|consensus 99.0 1.4E-10 3.1E-15 106.4 4.1 113 39-156 112-224 (377)
58 KOG0550|consensus 99.0 3.1E-10 6.7E-15 106.3 6.3 110 22-137 32-141 (486)
59 KOG1173|consensus 99.0 2.7E-09 5.8E-14 103.5 12.0 128 25-158 404-534 (611)
60 PRK11447 cellulose synthase su 99.0 1.8E-08 3.9E-13 110.3 18.9 125 27-157 295-429 (1157)
61 PRK15179 Vi polysaccharide bio 99.0 1.3E-08 2.7E-13 104.7 16.4 121 26-156 111-232 (694)
62 PRK11788 tetratricopeptide rep 99.0 1.2E-07 2.7E-12 91.0 21.9 117 39-159 105-226 (389)
63 PLN02789 farnesyltranstransfer 99.0 2.4E-08 5.3E-13 93.9 15.9 127 24-160 26-155 (320)
64 PF13429 TPR_15: Tetratricopep 98.9 4.9E-09 1.1E-13 96.7 10.5 117 39-159 144-260 (280)
65 COG5010 TadD Flp pilus assembl 98.9 5.2E-08 1.1E-12 86.8 16.2 132 18-159 82-214 (257)
66 PF13432 TPR_16: Tetratricopep 98.9 7.9E-09 1.7E-13 73.6 8.9 64 46-113 2-65 (65)
67 PRK11788 tetratricopeptide rep 98.9 1.1E-07 2.5E-12 91.2 19.4 115 27-147 61-175 (389)
68 PRK10803 tol-pal system protei 98.9 5.1E-08 1.1E-12 89.2 15.9 112 42-154 143-258 (263)
69 COG4235 Cytochrome c biogenesi 98.9 2.7E-08 5.9E-13 90.6 13.8 128 19-156 139-270 (287)
70 TIGR02917 PEP_TPR_lipo putativ 98.9 6.6E-08 1.4E-12 101.2 18.9 120 39-158 54-204 (899)
71 TIGR03302 OM_YfiO outer membra 98.9 1.4E-07 3E-12 84.5 17.7 119 40-159 69-215 (235)
72 TIGR02917 PEP_TPR_lipo putativ 98.9 7.1E-08 1.5E-12 100.9 18.1 118 36-157 120-237 (899)
73 PRK10049 pgaA outer membrane p 98.9 3.5E-08 7.7E-13 103.5 15.6 115 39-158 47-161 (765)
74 KOG1310|consensus 98.9 1.1E-08 2.3E-13 98.6 9.6 108 39-150 372-482 (758)
75 PRK11447 cellulose synthase su 98.8 5.8E-08 1.3E-12 106.3 16.4 103 41-147 603-705 (1157)
76 KOG0553|consensus 98.8 2.2E-08 4.8E-13 90.8 10.8 112 80-191 82-196 (304)
77 PF13525 YfiO: Outer membrane 98.8 2.6E-07 5.7E-12 81.4 17.1 120 37-157 1-134 (203)
78 PF13371 TPR_9: Tetratricopept 98.8 2.3E-08 4.9E-13 72.8 8.6 69 86-154 2-70 (73)
79 KOG4555|consensus 98.8 1.1E-07 2.5E-12 76.2 12.7 104 38-145 40-147 (175)
80 PRK10866 outer membrane biogen 98.8 5.9E-07 1.3E-11 81.4 19.1 120 39-159 30-170 (243)
81 PF14559 TPR_19: Tetratricopep 98.8 1.5E-08 3.2E-13 72.7 7.0 66 90-155 2-67 (68)
82 KOG1125|consensus 98.8 6.1E-08 1.3E-12 94.4 12.5 132 20-157 304-508 (579)
83 CHL00033 ycf3 photosystem I as 98.8 2.2E-07 4.7E-12 79.2 14.5 111 47-159 5-118 (168)
84 KOG2076|consensus 98.8 2.8E-07 6E-12 93.8 17.3 114 41-158 139-252 (895)
85 PLN03088 SGT1, suppressor of 98.8 3.8E-08 8.2E-13 94.2 10.6 93 24-126 25-117 (356)
86 PRK10049 pgaA outer membrane p 98.8 1.3E-07 2.8E-12 99.3 15.4 109 40-152 358-466 (765)
87 PF13512 TPR_18: Tetratricopep 98.8 2.1E-07 4.5E-12 76.4 12.9 117 35-152 4-138 (142)
88 PRK15363 pathogenicity island 98.7 7E-07 1.5E-11 74.6 15.7 81 78-159 35-115 (157)
89 PF13371 TPR_9: Tetratricopept 98.7 9.1E-08 2E-12 69.6 8.6 70 48-121 2-71 (73)
90 KOG2003|consensus 98.7 6.5E-08 1.4E-12 91.9 9.2 115 40-158 489-603 (840)
91 PRK02603 photosystem I assembl 98.7 8.4E-07 1.8E-11 75.9 15.2 95 63-159 21-118 (172)
92 KOG0546|consensus 98.7 4.1E-08 8.9E-13 90.8 7.3 132 34-165 215-361 (372)
93 COG4783 Putative Zn-dependent 98.7 1.1E-06 2.3E-11 84.6 16.8 115 41-159 306-420 (484)
94 COG5010 TadD Flp pilus assembl 98.7 9.1E-07 2E-11 79.0 15.1 111 45-159 70-180 (257)
95 PF09976 TPR_21: Tetratricopep 98.7 3.7E-07 8.1E-12 75.9 11.8 100 39-140 46-145 (145)
96 PF14559 TPR_19: Tetratricopep 98.6 8.3E-08 1.8E-12 68.7 6.5 67 51-121 1-67 (68)
97 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.5E-07 3.2E-12 90.5 9.5 70 39-109 73-142 (453)
98 PF12688 TPR_5: Tetratrico pep 98.6 1E-06 2.2E-11 70.9 12.9 99 42-141 2-103 (120)
99 PF13429 TPR_15: Tetratricopep 98.6 5.6E-07 1.2E-11 83.0 13.0 149 42-192 111-262 (280)
100 COG1729 Uncharacterized protei 98.6 7.7E-07 1.7E-11 80.2 13.2 113 40-153 140-255 (262)
101 PRK14574 hmsH outer membrane p 98.6 1.1E-06 2.4E-11 92.1 16.3 110 39-152 32-141 (822)
102 KOG4162|consensus 98.6 3.9E-07 8.4E-12 91.5 12.0 106 39-148 682-789 (799)
103 KOG2002|consensus 98.6 8.8E-07 1.9E-11 90.9 14.6 118 42-160 271-389 (1018)
104 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 5.1E-07 1.1E-11 86.9 12.1 69 70-142 70-141 (453)
105 COG4785 NlpI Lipoprotein NlpI, 98.6 7.4E-07 1.6E-11 77.6 11.7 122 21-147 46-167 (297)
106 cd00189 TPR Tetratricopeptide 98.6 1.8E-06 4E-11 63.3 12.5 78 81-158 2-79 (100)
107 PRK14574 hmsH outer membrane p 98.6 1.8E-06 3.8E-11 90.7 16.7 144 46-194 73-219 (822)
108 COG4783 Putative Zn-dependent 98.6 4.7E-06 1E-10 80.2 17.9 117 39-159 338-454 (484)
109 KOG2076|consensus 98.6 3.9E-06 8.6E-11 85.6 17.7 102 39-144 171-272 (895)
110 COG2956 Predicted N-acetylgluc 98.5 7.1E-06 1.5E-10 75.4 17.2 141 18-159 85-261 (389)
111 PF13424 TPR_12: Tetratricopep 98.5 2.5E-07 5.3E-12 68.3 6.6 65 78-142 4-75 (78)
112 PF13424 TPR_12: Tetratricopep 98.5 7.9E-07 1.7E-11 65.5 8.5 70 39-108 3-75 (78)
113 PF06552 TOM20_plant: Plant sp 98.5 1.7E-06 3.6E-11 73.5 10.8 96 57-156 7-123 (186)
114 TIGR02795 tol_pal_ybgF tol-pal 98.5 5.9E-06 1.3E-10 65.1 13.2 79 80-158 3-87 (119)
115 KOG2002|consensus 98.4 1.7E-06 3.8E-11 88.8 12.1 109 47-159 652-762 (1018)
116 PRK10153 DNA-binding transcrip 98.4 2.7E-06 5.9E-11 85.1 12.6 113 26-149 367-489 (517)
117 cd05804 StaR_like StaR_like; a 98.4 1.5E-05 3.2E-10 75.6 17.0 106 42-147 44-182 (355)
118 KOG0543|consensus 98.4 2.9E-06 6.4E-11 80.1 10.9 96 43-142 259-355 (397)
119 cd05804 StaR_like StaR_like; a 98.4 5.1E-06 1.1E-10 78.8 12.5 102 39-144 112-217 (355)
120 PRK14720 transcript cleavage f 98.3 1.4E-05 2.9E-10 83.8 15.7 115 39-159 29-162 (906)
121 KOG1129|consensus 98.3 2.1E-06 4.5E-11 79.0 7.3 102 54-159 337-441 (478)
122 PRK10747 putative protoheme IX 98.3 9.4E-05 2E-09 71.9 19.4 122 37-163 80-203 (398)
123 TIGR00540 hemY_coli hemY prote 98.3 8.6E-05 1.9E-09 72.4 19.0 119 38-160 81-200 (409)
124 KOG1840|consensus 98.3 3.4E-05 7.5E-10 76.5 16.2 104 39-142 197-312 (508)
125 KOG1128|consensus 98.3 6.4E-06 1.4E-10 82.5 10.7 103 43-149 487-589 (777)
126 PRK11906 transcriptional regul 98.3 2.7E-05 5.9E-10 75.3 14.6 113 43-159 257-384 (458)
127 KOG1173|consensus 98.3 2.5E-05 5.3E-10 76.5 14.4 142 45-190 384-535 (611)
128 KOG1840|consensus 98.2 4.1E-05 9E-10 75.9 16.0 104 39-142 239-354 (508)
129 KOG1127|consensus 98.2 2.4E-05 5.3E-10 80.8 13.9 125 20-150 477-633 (1238)
130 PF09976 TPR_21: Tetratricopep 98.2 0.00018 3.9E-09 59.6 16.8 119 39-159 9-130 (145)
131 PRK10153 DNA-binding transcrip 98.2 7.2E-05 1.6E-09 74.9 16.8 116 39-159 337-465 (517)
132 PF12569 NARP1: NMDA receptor- 98.2 6.1E-05 1.3E-09 75.2 16.1 75 81-155 196-270 (517)
133 KOG3060|consensus 98.2 0.00022 4.7E-09 63.8 17.6 109 44-156 89-197 (289)
134 PF00515 TPR_1: Tetratricopept 98.2 3.3E-06 7.1E-11 51.9 4.3 32 80-111 2-33 (34)
135 PF14938 SNAP: Soluble NSF att 98.2 2.5E-05 5.5E-10 72.3 12.2 113 34-146 107-229 (282)
136 COG2956 Predicted N-acetylgluc 98.1 0.00012 2.5E-09 67.5 15.5 115 35-153 174-289 (389)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 2.2E-05 4.8E-10 75.7 11.4 89 47-139 206-294 (395)
138 PRK11906 transcriptional regul 98.1 6.1E-05 1.3E-09 72.9 14.3 93 56-152 319-411 (458)
139 KOG3060|consensus 98.1 0.00043 9.4E-09 61.9 18.2 126 19-153 103-231 (289)
140 KOG1156|consensus 98.1 9.9E-05 2.1E-09 73.3 15.4 112 43-158 9-120 (700)
141 KOG4648|consensus 98.1 9.6E-06 2.1E-10 75.1 7.8 94 83-176 101-197 (536)
142 KOG1128|consensus 98.1 4.9E-05 1.1E-09 76.3 13.3 81 90-170 496-576 (777)
143 KOG2003|consensus 98.1 0.00026 5.6E-09 67.9 17.3 120 39-158 556-705 (840)
144 KOG4151|consensus 98.1 1.3E-05 2.9E-10 81.1 9.1 122 37-158 49-172 (748)
145 KOG1174|consensus 98.1 0.00019 4.2E-09 68.1 16.1 146 24-180 323-507 (564)
146 TIGR00540 hemY_coli hemY prote 98.1 0.00016 3.5E-09 70.5 16.5 117 40-159 262-382 (409)
147 PRK10747 putative protoheme IX 98.1 0.00024 5.3E-09 69.0 17.3 121 23-148 102-222 (398)
148 PF13431 TPR_17: Tetratricopep 98.0 6.4E-06 1.4E-10 50.8 3.6 32 102-133 2-33 (34)
149 KOG4162|consensus 98.0 0.0001 2.2E-09 74.5 13.6 112 44-159 653-766 (799)
150 PF03704 BTAD: Bacterial trans 98.0 0.00038 8.2E-09 57.6 15.0 102 41-142 6-125 (146)
151 PF00515 TPR_1: Tetratricopept 98.0 1.2E-05 2.6E-10 49.3 4.4 34 113-146 1-34 (34)
152 KOG4234|consensus 98.0 6.6E-05 1.4E-09 64.9 10.1 84 26-114 120-203 (271)
153 PF12968 DUF3856: Domain of Un 98.0 0.00022 4.7E-09 56.5 12.0 104 39-142 5-129 (144)
154 PF12895 Apc3: Anaphase-promot 97.9 2E-05 4.4E-10 58.9 5.7 67 92-159 2-70 (84)
155 PF13525 YfiO: Outer membrane 97.9 0.0012 2.5E-08 58.2 17.3 117 39-156 40-184 (203)
156 COG4235 Cytochrome c biogenesi 97.9 0.00038 8.3E-09 63.7 14.2 99 57-159 138-239 (287)
157 PF07719 TPR_2: Tetratricopept 97.9 3.4E-05 7.4E-10 47.0 5.0 31 115-145 3-33 (34)
158 KOG1129|consensus 97.9 8.1E-05 1.7E-09 68.7 9.5 77 80-156 291-367 (478)
159 PF13428 TPR_14: Tetratricopep 97.9 3.2E-05 7E-10 50.5 5.1 41 81-121 3-43 (44)
160 PF07719 TPR_2: Tetratricopept 97.9 3.4E-05 7.4E-10 47.0 5.0 33 80-112 2-34 (34)
161 PF12688 TPR_5: Tetratrico pep 97.9 0.00072 1.6E-08 54.4 13.9 78 80-157 2-85 (120)
162 PF04733 Coatomer_E: Coatomer 97.9 0.0001 2.2E-09 68.5 10.3 128 19-159 116-247 (290)
163 PF14938 SNAP: Soluble NSF att 97.9 0.00015 3.3E-09 67.1 11.2 107 35-142 69-184 (282)
164 PRK10803 tol-pal system protei 97.8 0.00057 1.2E-08 62.6 14.5 71 79-149 142-216 (263)
165 PRK14720 transcript cleavage f 97.8 9E-05 2E-09 77.8 10.0 101 39-142 63-178 (906)
166 KOG0495|consensus 97.8 0.00025 5.3E-09 70.8 12.1 104 52-160 629-732 (913)
167 PRK10866 outer membrane biogen 97.8 0.0014 3E-08 59.4 16.2 115 39-154 67-216 (243)
168 KOG1156|consensus 97.8 0.00039 8.5E-09 69.2 13.2 103 41-147 41-143 (700)
169 PF13428 TPR_14: Tetratricopep 97.8 6.1E-05 1.3E-09 49.2 5.4 42 114-155 2-43 (44)
170 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00016 3.4E-09 49.3 7.5 46 114-159 2-47 (53)
171 KOG1174|consensus 97.8 0.00033 7.2E-09 66.5 11.8 109 42-154 301-409 (564)
172 COG4785 NlpI Lipoprotein NlpI, 97.8 0.00016 3.5E-09 63.3 8.9 80 23-112 87-166 (297)
173 COG4105 ComL DNA uptake lipopr 97.8 0.0035 7.6E-08 56.4 17.6 116 39-155 32-158 (254)
174 PF04733 Coatomer_E: Coatomer 97.7 0.00083 1.8E-08 62.5 13.7 102 48-153 172-276 (290)
175 COG4700 Uncharacterized protei 97.7 0.0044 9.6E-08 53.2 16.6 102 42-146 90-193 (251)
176 KOG3785|consensus 97.7 0.0017 3.7E-08 60.8 14.8 105 47-155 63-227 (557)
177 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0013 2.7E-08 63.7 14.1 102 53-161 181-282 (395)
178 PF12569 NARP1: NMDA receptor- 97.6 0.001 2.2E-08 66.7 13.4 105 35-143 188-292 (517)
179 KOG1127|consensus 97.6 0.00098 2.1E-08 69.3 12.9 112 42-157 563-674 (1238)
180 KOG0551|consensus 97.5 0.0033 7E-08 58.4 13.9 96 40-159 118-213 (390)
181 PF13431 TPR_17: Tetratricopep 97.5 0.00011 2.3E-09 45.3 2.9 33 63-99 1-33 (34)
182 KOG0545|consensus 97.5 0.0021 4.6E-08 57.3 12.0 97 79-175 178-295 (329)
183 PF15015 NYD-SP12_N: Spermatog 97.5 0.00075 1.6E-08 64.3 9.6 102 39-140 174-289 (569)
184 KOG2796|consensus 97.5 0.0029 6.2E-08 57.1 12.8 121 22-147 197-320 (366)
185 PRK10941 hypothetical protein; 97.5 0.0017 3.7E-08 59.6 11.8 86 74-159 176-261 (269)
186 KOG4642|consensus 97.4 0.00022 4.8E-09 63.1 5.3 74 85-158 16-89 (284)
187 PRK15331 chaperone protein Sic 97.4 0.0034 7.5E-08 52.9 12.2 79 80-159 39-117 (165)
188 KOG1130|consensus 97.4 0.00045 9.8E-09 65.6 7.4 102 41-142 17-124 (639)
189 PF13512 TPR_18: Tetratricopep 97.4 0.00096 2.1E-08 54.9 8.4 72 78-149 9-83 (142)
190 PF10300 DUF3808: Protein of u 97.4 0.002 4.3E-08 64.0 11.9 102 39-141 265-375 (468)
191 PF13181 TPR_8: Tetratricopept 97.3 0.00044 9.4E-09 42.1 4.1 30 115-144 3-32 (34)
192 PF13181 TPR_8: Tetratricopept 97.3 0.00046 9.9E-09 42.0 4.2 33 80-112 2-34 (34)
193 KOG3824|consensus 97.3 0.0026 5.7E-08 58.5 10.7 83 78-160 115-197 (472)
194 KOG4555|consensus 97.2 0.0019 4.2E-08 52.2 8.2 76 39-114 75-150 (175)
195 PF06552 TOM20_plant: Plant sp 97.2 0.002 4.3E-08 55.0 8.4 72 39-114 23-115 (186)
196 KOG1130|consensus 97.2 0.0023 5E-08 61.0 9.6 108 35-142 189-304 (639)
197 COG3071 HemY Uncharacterized e 97.2 0.029 6.4E-07 53.2 16.6 119 38-160 81-200 (400)
198 KOG3785|consensus 97.1 0.0092 2E-07 56.0 12.7 87 50-139 31-117 (557)
199 COG1729 Uncharacterized protei 97.1 0.0098 2.1E-07 54.0 12.6 77 82-158 144-226 (262)
200 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0023 4.9E-08 43.6 6.4 40 80-119 2-41 (53)
201 KOG0376|consensus 97.1 0.00033 7.2E-09 67.7 3.2 95 19-123 22-116 (476)
202 KOG0495|consensus 97.1 0.0062 1.3E-07 61.1 11.9 109 39-151 683-791 (913)
203 COG2976 Uncharacterized protei 97.1 0.028 6E-07 48.7 14.2 106 37-146 85-192 (207)
204 COG0457 NrfG FOG: TPR repeat [ 97.1 0.027 5.8E-07 47.1 14.5 102 40-145 94-199 (291)
205 COG0457 NrfG FOG: TPR repeat [ 97.1 0.02 4.4E-07 47.9 13.6 96 50-146 139-235 (291)
206 KOG4340|consensus 97.0 0.002 4.3E-08 59.1 7.0 94 39-136 142-264 (459)
207 KOG4507|consensus 96.9 0.0048 1.1E-07 61.1 9.1 101 53-156 619-719 (886)
208 KOG2376|consensus 96.9 0.018 3.9E-07 57.2 12.8 106 42-147 111-258 (652)
209 KOG1941|consensus 96.8 0.0076 1.6E-07 56.7 9.3 108 42-149 123-244 (518)
210 PF13174 TPR_6: Tetratricopept 96.8 0.0027 5.9E-08 38.0 4.1 32 115-146 2-33 (33)
211 PF04781 DUF627: Protein of un 96.8 0.017 3.8E-07 45.3 9.5 96 47-143 2-108 (111)
212 KOG4340|consensus 96.7 0.0088 1.9E-07 54.9 8.9 86 51-140 20-105 (459)
213 KOG1308|consensus 96.7 0.00072 1.6E-08 62.9 1.9 69 91-159 126-194 (377)
214 KOG3081|consensus 96.7 0.048 1E-06 49.4 13.2 102 49-156 145-250 (299)
215 PF04184 ST7: ST7 protein; In 96.7 0.052 1.1E-06 53.2 14.1 71 79-149 259-332 (539)
216 smart00028 TPR Tetratricopepti 96.6 0.0033 7.1E-08 36.2 3.8 31 81-111 3-33 (34)
217 PRK04841 transcriptional regul 96.6 0.042 9.1E-07 58.9 14.8 104 39-142 450-560 (903)
218 KOG2053|consensus 96.6 0.047 1E-06 56.7 14.1 102 50-156 18-119 (932)
219 KOG2471|consensus 96.6 0.0057 1.2E-07 59.5 7.1 120 40-159 239-381 (696)
220 KOG3081|consensus 96.6 0.059 1.3E-06 48.8 13.0 93 55-151 187-280 (299)
221 KOG3364|consensus 96.6 0.027 5.8E-07 45.9 9.8 82 78-159 31-117 (149)
222 KOG4814|consensus 96.6 0.023 5E-07 57.0 11.3 101 42-142 355-457 (872)
223 KOG2376|consensus 96.6 0.067 1.5E-06 53.3 14.3 99 42-143 13-140 (652)
224 smart00028 TPR Tetratricopepti 96.6 0.004 8.7E-08 35.8 3.9 33 114-146 2-34 (34)
225 COG4105 ComL DNA uptake lipopr 96.5 0.024 5.2E-07 51.1 9.7 72 78-149 33-107 (254)
226 KOG1586|consensus 96.5 0.039 8.4E-07 49.1 10.7 108 38-146 71-187 (288)
227 PF10602 RPN7: 26S proteasome 96.4 0.069 1.5E-06 45.9 12.2 107 34-141 29-141 (177)
228 PF09986 DUF2225: Uncharacteri 96.3 0.1 2.2E-06 46.3 12.7 91 53-143 89-195 (214)
229 PLN03081 pentatricopeptide (PP 96.3 0.053 1.1E-06 56.6 12.7 108 43-154 428-535 (697)
230 PF13176 TPR_7: Tetratricopept 96.3 0.0082 1.8E-07 37.2 4.1 25 116-140 2-26 (36)
231 PF13176 TPR_7: Tetratricopept 96.3 0.0082 1.8E-07 37.2 4.0 24 45-68 3-26 (36)
232 PLN03081 pentatricopeptide (PP 96.2 0.087 1.9E-06 55.0 14.0 113 40-156 390-504 (697)
233 PRK04841 transcriptional regul 96.2 0.064 1.4E-06 57.5 13.3 100 43-142 533-641 (903)
234 KOG1586|consensus 96.2 0.39 8.5E-06 42.9 15.6 103 46-148 118-230 (288)
235 PLN03077 Protein ECB2; Provisi 96.2 0.13 2.8E-06 55.1 15.4 150 41-197 554-726 (857)
236 KOG4507|consensus 96.1 0.087 1.9E-06 52.6 12.1 107 41-149 212-319 (886)
237 PF13174 TPR_6: Tetratricopept 96.1 0.013 2.8E-07 34.9 4.1 32 81-112 2-33 (33)
238 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.077 1.7E-06 39.0 8.6 69 39-108 4-72 (80)
239 KOG1941|consensus 95.9 0.052 1.1E-06 51.2 9.1 73 73-145 77-154 (518)
240 KOG2396|consensus 95.9 0.24 5.1E-06 48.7 13.7 97 58-158 88-185 (568)
241 KOG3824|consensus 95.9 0.037 7.9E-07 51.2 7.8 81 38-122 113-193 (472)
242 PRK10941 hypothetical protein; 95.8 0.11 2.4E-06 47.7 10.9 78 41-122 181-258 (269)
243 COG3118 Thioredoxin domain-con 95.7 0.51 1.1E-05 43.5 14.5 98 44-145 137-268 (304)
244 PLN03218 maturation of RBCL 1; 95.6 0.54 1.2E-05 51.4 17.0 94 44-142 545-643 (1060)
245 COG4976 Predicted methyltransf 95.6 0.019 4E-07 51.0 4.8 60 90-149 6-65 (287)
246 PLN03218 maturation of RBCL 1; 95.6 0.67 1.4E-05 50.7 17.4 107 43-153 651-761 (1060)
247 PF02259 FAT: FAT domain; Int 95.6 1.2 2.5E-05 41.9 17.4 124 36-159 141-304 (352)
248 COG2912 Uncharacterized conser 95.5 0.15 3.2E-06 46.5 10.4 84 75-158 177-260 (269)
249 PF05843 Suf: Suppressor of fo 95.5 0.58 1.2E-05 43.2 14.6 101 43-147 3-104 (280)
250 PF03704 BTAD: Bacterial trans 95.5 0.15 3.1E-06 41.9 9.5 63 40-106 61-123 (146)
251 PLN03077 Protein ECB2; Provisi 95.4 0.16 3.5E-06 54.3 12.1 112 44-159 592-703 (857)
252 PF14561 TPR_20: Tetratricopep 95.3 0.12 2.6E-06 39.3 7.7 59 98-156 7-67 (90)
253 PF04184 ST7: ST7 protein; In 95.2 0.24 5.2E-06 48.8 11.1 104 49-156 176-304 (539)
254 PF12862 Apc5: Anaphase-promot 95.0 0.11 2.4E-06 39.6 6.9 58 51-108 8-70 (94)
255 PF10300 DUF3808: Protein of u 94.9 0.73 1.6E-05 45.9 14.3 99 54-156 246-348 (468)
256 COG3071 HemY Uncharacterized e 94.8 1.7 3.7E-05 41.6 15.5 114 40-156 117-231 (400)
257 PF13374 TPR_10: Tetratricopep 94.8 0.072 1.6E-06 33.3 4.5 29 80-108 3-31 (42)
258 KOG2610|consensus 94.7 0.46 9.9E-06 44.7 11.2 101 46-150 108-212 (491)
259 KOG3364|consensus 94.7 0.23 4.9E-06 40.6 8.1 75 40-117 31-109 (149)
260 KOG1915|consensus 94.6 0.67 1.5E-05 45.5 12.3 98 46-147 78-175 (677)
261 KOG1585|consensus 94.5 3.6 7.8E-05 37.2 16.9 118 41-158 31-158 (308)
262 PF09613 HrpB1_HrpK: Bacterial 94.5 1.4 3.1E-05 37.0 12.7 72 87-158 18-89 (160)
263 KOG1915|consensus 94.3 1.2 2.5E-05 43.9 13.3 106 53-159 378-483 (677)
264 KOG2796|consensus 94.1 0.99 2.2E-05 41.2 11.7 109 47-158 183-297 (366)
265 KOG2471|consensus 94.1 0.06 1.3E-06 52.6 4.3 85 42-126 284-382 (696)
266 PF02259 FAT: FAT domain; Int 94.0 0.69 1.5E-05 43.4 11.5 106 40-145 183-341 (352)
267 PF08631 SPO22: Meiosis protei 93.9 2.3 5E-05 39.1 14.4 109 35-144 29-152 (278)
268 COG4700 Uncharacterized protei 93.9 1.3 2.7E-05 38.5 11.4 93 49-146 64-157 (251)
269 PF14561 TPR_20: Tetratricopep 93.8 0.75 1.6E-05 34.8 9.1 66 60-129 7-74 (90)
270 KOG0686|consensus 93.8 0.58 1.3E-05 44.9 10.0 107 33-140 142-256 (466)
271 KOG2610|consensus 93.7 0.86 1.9E-05 42.9 10.8 93 45-138 141-234 (491)
272 PF08631 SPO22: Meiosis protei 93.7 3.1 6.6E-05 38.3 14.8 106 51-156 3-130 (278)
273 PF12862 Apc5: Anaphase-promot 93.3 0.45 9.7E-06 36.2 7.2 57 87-143 6-71 (94)
274 PF13374 TPR_10: Tetratricopep 93.2 0.23 5.1E-06 30.9 4.6 29 114-142 3-31 (42)
275 PF09986 DUF2225: Uncharacteri 93.1 0.82 1.8E-05 40.5 9.6 88 35-122 112-209 (214)
276 PF05843 Suf: Suppressor of fo 93.1 2.4 5.3E-05 39.1 13.1 109 42-154 36-148 (280)
277 PF13281 DUF4071: Domain of un 93.0 4.7 0.0001 38.8 15.0 78 46-127 184-273 (374)
278 PF07079 DUF1347: Protein of u 93.0 3.7 8.1E-05 40.2 14.2 49 89-138 472-520 (549)
279 COG3898 Uncharacterized membra 93.0 2.9 6.3E-05 40.2 13.2 93 52-145 199-295 (531)
280 KOG2053|consensus 92.9 0.9 1.9E-05 47.6 10.5 97 46-147 48-144 (932)
281 PF10516 SHNi-TPR: SHNi-TPR; 92.9 0.18 3.8E-06 31.8 3.5 28 81-108 3-30 (38)
282 KOG4814|consensus 92.6 1.5 3.3E-05 44.4 11.4 74 80-153 355-434 (872)
283 COG3914 Spy Predicted O-linked 92.5 2.4 5.2E-05 42.6 12.6 106 47-156 73-185 (620)
284 PRK13184 pknD serine/threonine 92.5 1.8 3.9E-05 46.5 12.6 113 45-159 479-598 (932)
285 COG4976 Predicted methyltransf 92.5 0.23 5E-06 44.2 5.0 60 50-113 4-63 (287)
286 PF10345 Cohesin_load: Cohesin 92.5 6.1 0.00013 40.7 16.3 127 21-149 40-177 (608)
287 KOG1585|consensus 92.5 1 2.2E-05 40.6 9.0 93 50-142 119-219 (308)
288 COG3898 Uncharacterized membra 92.3 2.1 4.6E-05 41.1 11.4 124 18-157 246-372 (531)
289 COG3629 DnrI DNA-binding trans 92.3 1 2.2E-05 41.6 9.1 66 77-142 151-216 (280)
290 PF09613 HrpB1_HrpK: Bacterial 91.9 6.9 0.00015 33.0 15.3 114 37-156 6-119 (160)
291 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.33 7.3E-06 30.5 3.7 29 114-142 2-30 (38)
292 COG2912 Uncharacterized conser 91.5 1.6 3.5E-05 39.9 9.4 78 40-121 180-257 (269)
293 KOG1070|consensus 91.4 9.2 0.0002 42.5 16.1 86 55-145 1511-1596(1710)
294 KOG0530|consensus 91.0 9 0.00019 35.1 13.4 102 54-159 56-159 (318)
295 COG3914 Spy Predicted O-linked 90.7 5.6 0.00012 40.1 12.9 95 57-153 47-142 (620)
296 TIGR02561 HrpB1_HrpK type III 90.4 8.6 0.00019 32.0 11.9 113 83-197 14-126 (153)
297 PF07720 TPR_3: Tetratricopept 90.3 1 2.3E-05 27.8 5.0 33 114-146 2-36 (36)
298 KOG1070|consensus 90.1 11 0.00025 41.8 15.3 107 48-158 1537-1645(1710)
299 KOG1550|consensus 90.0 7.2 0.00016 39.7 13.7 101 46-156 293-405 (552)
300 PF04781 DUF627: Protein of un 89.8 1.3 2.7E-05 35.0 6.2 83 21-109 15-108 (111)
301 KOG2047|consensus 89.5 20 0.00043 36.9 15.6 68 41-108 387-454 (835)
302 PF10602 RPN7: 26S proteasome 89.2 12 0.00026 32.0 12.5 65 78-142 35-102 (177)
303 COG3947 Response regulator con 89.1 2.1 4.5E-05 39.6 8.0 53 86-138 286-338 (361)
304 PF04910 Tcf25: Transcriptiona 89.0 4.4 9.6E-05 38.9 10.8 68 78-145 39-135 (360)
305 KOG0530|consensus 89.0 2.5 5.3E-05 38.6 8.3 92 56-151 93-185 (318)
306 COG0790 FOG: TPR repeat, SEL1 89.0 12 0.00027 34.1 13.5 108 40-154 108-230 (292)
307 PF12968 DUF3856: Domain of Un 89.0 4.9 0.00011 32.2 9.0 68 41-108 55-129 (144)
308 COG5191 Uncharacterized conser 88.6 1.2 2.6E-05 41.5 6.2 77 80-156 108-185 (435)
309 cd02682 MIT_AAA_Arch MIT: doma 88.6 0.97 2.1E-05 33.0 4.5 32 39-70 4-35 (75)
310 KOG0529|consensus 88.5 8.6 0.00019 37.2 11.9 103 52-158 86-194 (421)
311 PF10373 EST1_DNA_bind: Est1 D 87.5 1.8 3.9E-05 39.2 6.8 62 60-125 1-62 (278)
312 PF10255 Paf67: RNA polymerase 86.7 1.2 2.7E-05 43.2 5.3 56 85-141 128-192 (404)
313 PF10373 EST1_DNA_bind: Est1 D 86.6 3 6.5E-05 37.8 7.8 62 98-159 1-62 (278)
314 PF07721 TPR_4: Tetratricopept 86.4 1 2.3E-05 25.4 2.9 23 115-137 3-25 (26)
315 KOG2047|consensus 86.0 10 0.00023 38.8 11.4 109 35-143 419-541 (835)
316 cd02682 MIT_AAA_Arch MIT: doma 85.7 9.9 0.00022 27.7 8.4 34 125-158 18-58 (75)
317 PF14863 Alkyl_sulf_dimr: Alky 85.3 5.2 0.00011 33.0 7.7 49 112-160 69-117 (141)
318 COG4649 Uncharacterized protei 85.2 24 0.00051 30.5 12.9 100 41-141 94-195 (221)
319 KOG2581|consensus 84.8 15 0.00034 35.5 11.4 122 32-156 238-363 (493)
320 smart00745 MIT Microtubule Int 84.5 8.3 0.00018 27.8 7.8 34 37-70 4-37 (77)
321 PF04212 MIT: MIT (microtubule 84.4 2.3 5E-05 30.2 4.6 32 39-70 3-34 (69)
322 KOG2300|consensus 84.2 27 0.00058 34.8 12.9 100 39-143 365-475 (629)
323 PF06957 COPI_C: Coatomer (COP 83.8 8.3 0.00018 37.7 9.5 107 42-148 205-335 (422)
324 PF11207 DUF2989: Protein of u 83.3 3.2 6.9E-05 36.3 5.8 57 41-98 141-197 (203)
325 cd02683 MIT_1 MIT: domain cont 83.3 2.5 5.3E-05 31.0 4.4 32 39-70 4-35 (77)
326 PF10579 Rapsyn_N: Rapsyn N-te 83.2 7.8 0.00017 28.6 6.9 60 83-142 10-72 (80)
327 TIGR03504 FimV_Cterm FimV C-te 83.1 2.5 5.4E-05 27.5 3.9 25 117-141 3-27 (44)
328 cd02681 MIT_calpain7_1 MIT: do 83.1 2.6 5.7E-05 30.8 4.5 32 39-70 4-35 (76)
329 COG2976 Uncharacterized protei 82.8 32 0.00069 30.1 14.0 55 85-139 95-152 (207)
330 KOG3617|consensus 82.6 11 0.00025 39.7 10.2 100 43-142 860-996 (1416)
331 PF07720 TPR_3: Tetratricopept 82.6 4.9 0.00011 24.8 4.9 29 83-111 5-35 (36)
332 KOG0985|consensus 82.5 4.8 0.0001 43.3 7.6 73 43-132 1196-1268(1666)
333 TIGR02561 HrpB1_HrpK type III 82.4 28 0.0006 29.1 12.5 94 39-136 8-101 (153)
334 cd02681 MIT_calpain7_1 MIT: do 82.3 14 0.0003 27.1 8.0 18 125-142 18-35 (76)
335 PF14863 Alkyl_sulf_dimr: Alky 82.2 4.7 0.0001 33.3 6.2 52 81-132 72-123 (141)
336 COG4455 ImpE Protein of avirul 82.0 15 0.00033 32.8 9.5 62 48-113 8-69 (273)
337 KOG0529|consensus 82.0 40 0.00087 32.8 13.1 104 52-159 39-157 (421)
338 PF11817 Foie-gras_1: Foie gra 82.0 10 0.00022 34.2 9.0 64 77-140 176-245 (247)
339 KOG0985|consensus 81.6 19 0.00042 38.9 11.6 88 46-142 1053-1162(1666)
340 PF04910 Tcf25: Transcriptiona 81.5 31 0.00067 33.1 12.4 102 39-141 38-167 (360)
341 COG3118 Thioredoxin domain-con 81.2 4.6 0.0001 37.4 6.3 54 85-138 140-193 (304)
342 PF07721 TPR_4: Tetratricopept 81.2 2.1 4.6E-05 24.1 2.7 24 80-103 2-25 (26)
343 PF08424 NRDE-2: NRDE-2, neces 80.3 49 0.0011 31.1 13.3 82 57-142 47-131 (321)
344 PRK15180 Vi polysaccharide bio 79.9 15 0.00033 36.5 9.6 52 50-105 298-349 (831)
345 COG2909 MalT ATP-dependent tra 79.5 93 0.002 33.3 16.6 101 43-143 417-527 (894)
346 cd02678 MIT_VPS4 MIT: domain c 79.2 14 0.0003 26.7 7.3 32 39-70 4-35 (75)
347 KOG1310|consensus 79.1 7.1 0.00015 39.1 7.2 71 39-113 406-479 (758)
348 PF08424 NRDE-2: NRDE-2, neces 76.5 68 0.0015 30.1 15.9 86 62-151 6-103 (321)
349 KOG1839|consensus 76.0 26 0.00057 38.7 10.9 101 37-142 928-1044(1236)
350 cd02680 MIT_calpain7_2 MIT: do 75.6 5.1 0.00011 29.3 4.0 32 39-70 4-35 (75)
351 KOG0546|consensus 75.5 2.1 4.6E-05 40.5 2.5 71 45-119 279-349 (372)
352 cd02656 MIT MIT: domain contai 75.5 6.4 0.00014 28.4 4.6 32 39-70 4-35 (75)
353 PF11817 Foie-gras_1: Foie gra 75.4 33 0.00072 30.9 10.2 24 118-141 183-206 (247)
354 COG4941 Predicted RNA polymera 75.2 20 0.00043 34.0 8.6 76 80-156 330-408 (415)
355 cd02683 MIT_1 MIT: domain cont 75.2 30 0.00064 25.3 8.3 33 124-156 17-56 (77)
356 PF09670 Cas_Cas02710: CRISPR- 74.6 70 0.0015 30.9 12.8 67 39-107 129-197 (379)
357 COG5191 Uncharacterized conser 74.5 5.3 0.00011 37.4 4.6 72 42-117 108-180 (435)
358 KOG1550|consensus 74.3 40 0.00087 34.3 11.5 92 43-142 327-426 (552)
359 COG3629 DnrI DNA-binding trans 74.1 20 0.00042 33.2 8.3 65 39-107 151-215 (280)
360 cd02684 MIT_2 MIT: domain cont 73.8 26 0.00057 25.4 7.4 32 39-70 4-35 (75)
361 KOG3807|consensus 73.1 88 0.0019 29.8 12.7 89 50-144 193-306 (556)
362 COG0790 FOG: TPR repeat, SEL1 72.7 42 0.00092 30.5 10.5 62 57-127 171-236 (292)
363 COG3947 Response regulator con 72.2 22 0.00047 33.1 8.0 47 113-159 279-325 (361)
364 cd02684 MIT_2 MIT: domain cont 71.7 36 0.00077 24.7 7.8 18 125-142 18-35 (75)
365 cd02677 MIT_SNX15 MIT: domain 70.7 8.3 0.00018 28.1 4.1 32 39-70 4-35 (75)
366 KOG2300|consensus 70.4 1.2E+02 0.0027 30.4 14.7 113 22-136 29-150 (629)
367 smart00745 MIT Microtubule Int 70.3 20 0.00043 25.8 6.2 16 125-140 20-35 (77)
368 PF07079 DUF1347: Protein of u 69.7 53 0.0011 32.5 10.3 99 44-142 9-108 (549)
369 PF10345 Cohesin_load: Cohesin 69.6 76 0.0016 32.7 12.5 98 40-137 300-428 (608)
370 KOG1839|consensus 68.6 27 0.00059 38.6 9.0 105 39-143 971-1087(1236)
371 KOG3783|consensus 68.0 34 0.00074 34.4 8.9 77 40-119 266-342 (546)
372 PF10952 DUF2753: Protein of u 67.2 32 0.00069 27.8 7.0 63 43-105 3-76 (140)
373 PF13281 DUF4071: Domain of un 66.5 1.3E+02 0.0028 29.1 13.4 82 78-159 140-229 (374)
374 PRK15180 Vi polysaccharide bio 66.4 15 0.00032 36.5 6.0 92 50-145 332-423 (831)
375 PF11846 DUF3366: Domain of un 66.0 37 0.00081 29.1 8.1 51 94-145 126-176 (193)
376 PF04010 DUF357: Protein of un 65.9 20 0.00043 26.1 5.3 43 23-65 9-59 (75)
377 PF04053 Coatomer_WDAD: Coatom 65.9 41 0.00089 33.3 9.2 25 80-104 348-372 (443)
378 KOG2581|consensus 65.0 1.2E+02 0.0027 29.6 11.6 70 78-147 208-281 (493)
379 KOG2396|consensus 64.9 59 0.0013 32.5 9.8 67 46-116 110-177 (568)
380 KOG0292|consensus 64.7 1.8E+02 0.004 31.3 13.6 112 39-150 989-1121(1202)
381 COG2909 MalT ATP-dependent tra 64.3 82 0.0018 33.7 11.2 100 38-137 455-563 (894)
382 KOG3617|consensus 64.2 45 0.00098 35.5 9.2 85 57-141 835-940 (1416)
383 cd02679 MIT_spastin MIT: domai 63.9 14 0.00031 27.2 4.3 20 123-142 18-37 (79)
384 PF04212 MIT: MIT (microtubule 62.8 20 0.00044 25.2 4.9 19 123-141 15-33 (69)
385 TIGR03504 FimV_Cterm FimV C-te 62.1 15 0.00033 23.8 3.7 25 83-107 3-27 (44)
386 PF07219 HemY_N: HemY protein 61.0 57 0.0012 25.3 7.5 31 39-69 57-87 (108)
387 PF10255 Paf67: RNA polymerase 61.0 49 0.0011 32.3 8.5 96 49-145 130-231 (404)
388 TIGR02710 CRISPR-associated pr 60.7 1.7E+02 0.0036 28.4 12.0 63 42-104 131-196 (380)
389 KOG4014|consensus 60.5 1.1E+02 0.0024 26.7 9.5 110 40-159 67-212 (248)
390 cd02680 MIT_calpain7_2 MIT: do 60.0 15 0.00034 26.7 3.8 16 92-107 19-34 (75)
391 cd02679 MIT_spastin MIT: domai 59.7 17 0.00036 26.8 4.0 31 39-69 6-36 (79)
392 COG5159 RPN6 26S proteasome re 59.7 70 0.0015 29.9 8.7 52 45-96 7-62 (421)
393 cd02656 MIT MIT: domain contai 59.6 46 0.001 23.8 6.4 17 125-141 18-34 (75)
394 COG4455 ImpE Protein of avirul 59.1 27 0.00059 31.2 5.8 62 88-149 10-71 (273)
395 KOG2422|consensus 58.9 1.6E+02 0.0034 30.2 11.6 104 46-149 240-379 (665)
396 PHA02537 M terminase endonucle 58.8 1.3E+02 0.0028 27.0 10.2 94 53-146 95-211 (230)
397 smart00386 HAT HAT (Half-A-TPR 57.8 28 0.00061 19.5 4.2 21 96-116 4-24 (33)
398 PF07219 HemY_N: HemY protein 57.3 58 0.0013 25.2 7.0 47 82-128 62-108 (108)
399 PF12854 PPR_1: PPR repeat 57.2 30 0.00065 20.6 4.2 27 112-138 6-32 (34)
400 KOG0890|consensus 57.1 1.7E+02 0.0036 35.0 12.7 100 42-143 1630-1732(2382)
401 PF08010 Phage_30_3: Bacteriop 56.4 28 0.00061 28.7 5.1 63 1-72 17-82 (146)
402 KOG2114|consensus 55.8 95 0.002 33.1 9.8 37 34-70 361-397 (933)
403 PF09797 NatB_MDM20: N-acetylt 55.7 97 0.0021 29.6 9.7 48 92-139 196-243 (365)
404 cd02678 MIT_VPS4 MIT: domain c 55.0 76 0.0017 22.8 7.7 19 123-141 16-34 (75)
405 PRK13184 pknD serine/threonine 53.8 97 0.0021 33.8 10.0 85 56-147 534-625 (932)
406 PF04053 Coatomer_WDAD: Coatom 53.0 88 0.0019 31.0 9.0 47 89-140 328-374 (443)
407 KOG1463|consensus 53.0 72 0.0016 30.4 7.8 110 36-145 204-319 (411)
408 smart00101 14_3_3 14-3-3 homol 51.2 1.8E+02 0.0038 26.4 9.9 17 35-51 112-128 (244)
409 PF15469 Sec5: Exocyst complex 51.2 1.4E+02 0.0031 25.2 9.1 25 127-151 153-177 (182)
410 PF02064 MAS20: MAS20 protein 50.8 42 0.0009 26.9 5.2 34 42-75 64-97 (121)
411 COG2015 Alkyl sulfatase and re 50.7 36 0.00077 33.9 5.6 51 85-135 458-508 (655)
412 KOG2041|consensus 50.3 1.2E+02 0.0027 31.8 9.5 82 38-135 793-874 (1189)
413 cd02677 MIT_SNX15 MIT: domain 49.0 1E+02 0.0022 22.4 6.7 18 125-142 18-35 (75)
414 KOG4459|consensus 48.0 62 0.0013 31.9 6.8 116 42-157 32-177 (471)
415 KOG3616|consensus 47.6 76 0.0016 33.5 7.5 102 39-140 770-909 (1636)
416 KOG1464|consensus 47.2 55 0.0012 30.3 6.0 56 52-107 38-93 (440)
417 PF01239 PPTA: Protein prenylt 47.2 55 0.0012 18.9 4.5 26 98-123 2-27 (31)
418 COG1849 Uncharacterized protei 47.1 64 0.0014 24.3 5.3 45 21-65 17-65 (90)
419 KOG4056|consensus 45.6 42 0.00091 27.5 4.4 39 43-81 83-121 (143)
420 TIGR00985 3a0801s04tom mitocho 45.0 72 0.0016 26.5 5.9 34 42-75 91-125 (148)
421 PRK11619 lytic murein transgly 43.8 2.8E+02 0.0061 29.0 11.4 57 85-141 318-374 (644)
422 PF00244 14-3-3: 14-3-3 protei 43.7 1.7E+02 0.0036 26.2 8.7 71 35-106 110-196 (236)
423 PF01535 PPR: PPR repeat; Int 43.5 43 0.00093 18.6 3.3 25 117-141 4-28 (31)
424 PF11207 DUF2989: Protein of u 43.2 1.9E+02 0.0042 25.4 8.5 42 92-133 153-198 (203)
425 PF05470 eIF-3c_N: Eukaryotic 43.0 1.7E+02 0.0037 30.2 9.5 25 117-141 504-528 (595)
426 PF09205 DUF1955: Domain of un 43.0 1.9E+02 0.0042 23.9 8.4 60 82-141 88-148 (161)
427 KOG1497|consensus 42.9 3E+02 0.0066 26.2 11.8 105 36-141 97-212 (399)
428 PF15015 NYD-SP12_N: Spermatog 42.7 56 0.0012 32.1 5.5 57 46-106 233-289 (569)
429 KOG0890|consensus 42.7 3.9E+02 0.0084 32.2 12.7 106 35-146 1664-1788(2382)
430 KOG0276|consensus 42.7 1.4E+02 0.003 30.9 8.4 70 60-142 626-695 (794)
431 KOG2582|consensus 42.4 34 0.00073 32.8 4.0 103 40-142 101-212 (422)
432 cd01787 GRB7_RA RA (RAS-associ 40.4 29 0.00064 25.9 2.6 26 280-305 5-30 (85)
433 KOG1497|consensus 40.0 3.4E+02 0.0073 25.9 14.4 82 77-159 101-192 (399)
434 PF15469 Sec5: Exocyst complex 39.9 1.2E+02 0.0026 25.7 6.9 70 123-192 96-169 (182)
435 cd06402 PB1_p62 The PB1 domain 39.6 1.2E+02 0.0025 22.8 5.8 58 253-323 30-87 (87)
436 PF12739 TRAPPC-Trs85: ER-Golg 39.6 3.4E+02 0.0074 26.4 10.8 101 42-142 209-329 (414)
437 COG5091 SGT1 Suppressor of G2 38.8 97 0.0021 28.6 6.1 93 51-144 5-110 (368)
438 KOG2561|consensus 38.3 4.1E+02 0.009 26.4 10.6 103 39-141 161-295 (568)
439 KOG0739|consensus 37.9 1.6E+02 0.0035 27.8 7.5 44 95-138 33-77 (439)
440 TIGR00756 PPR pentatricopeptid 37.6 75 0.0016 17.8 3.9 26 116-141 3-28 (35)
441 PF02064 MAS20: MAS20 protein 36.7 98 0.0021 24.8 5.3 39 117-155 67-105 (121)
442 KOG1464|consensus 36.0 1.2E+02 0.0027 28.0 6.4 30 41-70 65-94 (440)
443 KOG4563|consensus 35.7 1.1E+02 0.0024 29.4 6.2 36 37-72 37-72 (400)
444 PF08238 Sel1: Sel1 repeat; I 35.7 91 0.002 18.4 4.1 15 128-142 23-37 (39)
445 PF10938 YfdX: YfdX protein; 35.7 2.1E+02 0.0046 23.8 7.5 71 37-107 71-145 (155)
446 smart00671 SEL1 Sel1-like repe 35.5 91 0.002 18.0 4.1 27 115-141 3-33 (36)
447 KOG2758|consensus 33.7 2.4E+02 0.0051 26.9 7.9 68 39-108 127-196 (432)
448 PF13041 PPR_2: PPR repeat fam 31.7 1.4E+02 0.003 19.0 6.0 28 115-142 5-32 (50)
449 PF08626 TRAPPC9-Trs120: Trans 31.2 77 0.0017 35.6 5.3 54 39-92 240-295 (1185)
450 KOG2997|consensus 30.6 1.2E+02 0.0026 28.7 5.5 39 35-73 13-51 (366)
451 COG1756 Mra1 Uncharacterized c 30.4 77 0.0017 28.1 4.0 40 253-299 63-102 (223)
452 PF03745 DUF309: Domain of unk 29.6 1.9E+02 0.0042 20.0 7.6 57 45-101 3-61 (62)
453 cd00280 TRFH Telomeric Repeat 29.5 1.1E+02 0.0023 26.7 4.6 63 95-158 85-155 (200)
454 PF11846 DUF3366: Domain of un 29.1 1.9E+02 0.004 24.7 6.4 49 57-110 127-175 (193)
455 KOG3807|consensus 29.0 5.3E+02 0.011 24.8 14.5 67 81-147 277-346 (556)
456 PHA02537 M terminase endonucle 28.9 3.8E+02 0.0082 24.0 8.3 77 36-112 124-211 (230)
457 KOG3616|consensus 28.8 3.1E+02 0.0067 29.3 8.5 18 48-65 713-730 (1636)
458 KOG4014|consensus 28.7 4E+02 0.0087 23.3 9.1 47 39-91 103-156 (248)
459 PF14689 SPOB_a: Sensor_kinase 28.5 1.3E+02 0.0028 20.8 4.3 36 106-141 16-51 (62)
460 PF09670 Cas_Cas02710: CRISPR- 27.9 4.5E+02 0.0098 25.3 9.4 65 78-142 130-198 (379)
461 KOG0276|consensus 27.8 4.3E+02 0.0092 27.5 9.1 30 41-70 666-695 (794)
462 PF03587 EMG1: EMG1/NEP1 methy 27.2 96 0.0021 27.2 4.1 46 276-321 58-115 (202)
463 PF12583 TPPII_N: Tripeptidyl 26.4 2.4E+02 0.0051 23.1 5.8 31 123-153 86-116 (139)
464 PF08311 Mad3_BUB1_I: Mad3/BUB 26.3 2.3E+02 0.005 22.5 6.0 46 59-106 81-126 (126)
465 PF12652 CotJB: CotJB protein; 26.1 2.7E+02 0.0058 20.4 6.1 43 125-167 7-49 (78)
466 KOG0889|consensus 26.0 6E+02 0.013 32.1 11.1 67 77-143 2810-2884(3550)
467 KOG2041|consensus 25.9 3.9E+02 0.0084 28.4 8.5 53 74-134 791-843 (1189)
468 PRK04171 ribosome biogenesis p 25.7 93 0.002 27.7 3.8 36 257-299 66-101 (222)
469 PF13812 PPR_3: Pentatricopept 25.1 1.4E+02 0.003 16.8 4.3 26 116-141 4-29 (34)
470 KOG3783|consensus 24.8 7.5E+02 0.016 25.2 13.4 72 74-145 444-523 (546)
471 PF08969 USP8_dimer: USP8 dime 24.6 1.5E+02 0.0032 23.2 4.5 32 39-70 36-67 (115)
472 cd01760 RBD Ubiquitin-like dom 24.4 77 0.0017 22.8 2.5 26 280-305 2-27 (72)
473 KOG2422|consensus 23.9 8.2E+02 0.018 25.3 14.9 99 38-139 288-404 (665)
474 PRK11827 hypothetical protein; 23.7 21 0.00045 24.9 -0.5 15 306-320 33-47 (60)
475 PF12753 Nro1: Nuclear pore co 23.7 1.3E+02 0.0029 29.2 4.7 46 95-142 334-391 (404)
476 KOG4151|consensus 23.5 1E+02 0.0022 32.5 4.0 81 39-123 89-171 (748)
477 KOG1914|consensus 23.4 4.4E+02 0.0096 27.0 8.2 72 25-107 10-81 (656)
478 PF00244 14-3-3: 14-3-3 protei 23.3 5.4E+02 0.012 22.9 10.1 30 116-145 4-33 (236)
479 PF02184 HAT: HAT (Half-A-TPR) 22.8 1.9E+02 0.004 17.4 3.5 24 95-119 3-26 (32)
480 PF13763 DUF4167: Domain of un 21.8 2.7E+02 0.0058 20.6 4.9 33 35-67 33-65 (80)
481 PF09205 DUF1955: Domain of un 21.7 4.7E+02 0.01 21.7 7.6 61 44-108 88-149 (161)
482 KOG3540|consensus 20.9 8.6E+02 0.019 24.4 11.2 55 93-147 326-382 (615)
483 KOG3540|consensus 20.9 8.6E+02 0.019 24.4 10.5 21 127-147 326-346 (615)
484 KOG1914|consensus 20.6 5.1E+02 0.011 26.5 8.1 73 65-142 10-82 (656)
485 KOG3995|consensus 20.4 44 0.00094 29.4 0.7 60 242-304 17-78 (279)
486 KOG3073|consensus 20.2 1.6E+02 0.0035 25.9 4.0 39 253-298 75-113 (236)
No 1
>KOG0551|consensus
Probab=100.00 E-value=5.5e-79 Score=547.42 Aligned_cols=333 Identities=39% Similarity=0.619 Sum_probs=303.5
Q ss_pred CCCCCCCCcCCCCCCCCCChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH
Q psy5660 1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ 80 (337)
Q Consensus 1 ~~~~PlFm~~~p~~~~~~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~ 80 (337)
||+||||||++|++| +.++++++||+|++++.|++|+++|++||+.||.||+.++|+.|+.+|++||+.+|.|+++++.
T Consensus 42 m~k~PfFMt~~p~~g-d~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnav 120 (390)
T KOG0551|consen 42 MNKVPFFMTRAPSEG-DPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAV 120 (390)
T ss_pred HhcCcHHHhcCCCCC-CCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHH
Confidence 799999999999997 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH---HHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR---TSCI 157 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l---~~~~ 157 (337)
+|+|||+|++.+|||++||.||.+|++++|++.||++|.|+|++++.++++|..||+.++.++-..+.+..+. ....
T Consensus 121 LY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~ 200 (390)
T KOG0551|consen 121 LYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKND 200 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcch
Confidence 9999999999999999999999999999999999999999999999999999999999999998887776666 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc--CC-CCCCCccCCCCCCCCCC-CCCCeeecCCCceeeee
Q psy5660 158 NKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLAT--SG-KGDLKSFSDLEPNFPEI-TLRPVHTDDNDRLVWPV 233 (337)
Q Consensus 158 ~~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~~~--~~-~~~~~~~~~~~~~~~~~-~~~~~~ld~~~~l~~Pv 233 (337)
..+...+++.+|....++++..+...+..+++.|+|++.+ +. +...++...+...+|.+ ....+.+|.+|.|+||+
T Consensus 201 ~~~L~~er~~rK~~~e~kk~~e~~krl~~a~k~r~ikl~~~~~~~r~~~se~~~~~~~L~~~~~~~~~~~D~~s~LiwP~ 280 (390)
T KOG0551|consen 201 KLKLIEERDVRKKNAEEKKERESNKRLLQAIKARNIKLSEAACEDRDSLSEELFLPGLLPENPHGLRLSLDGQSRLIWPA 280 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcchhhhccchhhhhhhcCCCcCCCCccccccccCCcceeehhH
Confidence 4466677888888888888888899999999999999987 33 33455555555555543 22355567889999999
Q ss_pred eeeeccCCccccccccCCcCCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCCHHHhhcCCceEeeC
Q psy5660 234 LFLYPEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQA 313 (337)
Q Consensus 234 l~lYPe~~q~Dfi~~~~e~~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~l~~vl~~~~~~~~~ 313 (337)
+|+|||+.|||||++++|++|+++||.+||++|+|||.+++|+++||.|||+|..++|+|||++.||++||++++|.|.+
T Consensus 281 l~~YPe~~qsDFv~e~~E~tT~~elL~~vl~~p~~wD~~~~y~p~nv~Vf~e~~~~gL~kV~~~~~~~~iL~~~~~~l~~ 360 (390)
T KOG0551|consen 281 LFLYPEYAQSDFVSEVSELTTVIELLKTVLGEPAPWDLEQKYNPDNVLVFMETEAGGLIKVGKKSTLLDILKHPGVFLKD 360 (390)
T ss_pred HHhccchhhcchhhhccccccHHHHHHHHhCCCCCCCHHhccCccceeEEEeccccceeeccccchHHHHHcCCCeeecC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CceEEEEEeCCCHH--HHHHhhh
Q psy5660 314 GTPGFSILVADSKE--EAQFIKD 334 (337)
Q Consensus 314 ~~~~~~v~~k~~~~--~~~f~~~ 334 (337)
|+|.||||||.|++ .+.|+++
T Consensus 361 g~~~i~Vv~k~~a~~~~~~~~k~ 383 (390)
T KOG0551|consen 361 GALKIYVVPKVSAEGWISKFDKQ 383 (390)
T ss_pred CceEEEEecCccchHHHHHHHhh
Confidence 99999999999996 8999875
No 2
>KOG0553|consensus
Probab=99.91 E-value=1.1e-23 Score=189.11 Aligned_cols=138 Identities=27% Similarity=0.407 Sum_probs=121.9
Q ss_pred ChhHHHhhccccCC-CCC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC
Q psy5660 19 SPLVEGLQQLKYDP-LEN---TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN 94 (337)
Q Consensus 19 ~~~lealqaL~~dp-~~~---~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~ 94 (337)
.+.++.+.+..-.| ++. +....|+.+|.+||.+++.++|..|+..|++||+++|. ++++|+|||++|.+||.
T Consensus 55 ~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~----nAVyycNRAAAy~~Lg~ 130 (304)
T KOG0553|consen 55 TTLLDSFESAERHPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT----NAVYYCNRAAAYSKLGE 130 (304)
T ss_pred ccHHHHHHHhccCcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhcc
Confidence 34555555544322 122 34578999999999999999999999999999999999 66999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
|..|+.||+.||.+||.+.|+|.|+|.+|+.+|++.+|++.|+++|.++|+|...+..+..++.+.
T Consensus 131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988888776553
No 3
>KOG4234|consensus
Probab=99.86 E-value=1.3e-20 Score=160.10 Aligned_cols=164 Identities=26% Similarity=0.350 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
..+.|..+|..||.+|+.|+|..|...|+.||++.|.-. +..+++|+|||+|.++++.+..||.+|.+||+++|.+.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 357789999999999999999999999999999998644 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKL 195 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~ 195 (337)
+.|+|.+|..+.+|++|+..|++.++++|...++.....++-.+. ..+.+.-+.++...|+..|.-+
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i-------------~ernEkmKee~m~kLKdlGN~i 237 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI-------------NERNEKMKEEMMEKLKDLGNFI 237 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH-------------HHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999887665544432221 1122333455788899998866
Q ss_pred ccCCCCCCCccCCCCCCCCCCCCCCeeecCC
Q psy5660 196 ATSGKGDLKSFSDLEPNFPEITLRPVHTDDN 226 (337)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 226 (337)
.. |......++.+..|++
T Consensus 238 L~-------------pFGlStdnFqmvqd~n 255 (271)
T KOG4234|consen 238 LS-------------PFGLSTDNFQMVQDPN 255 (271)
T ss_pred cc-------------cccccccceeeeeCCC
Confidence 55 4444455567777755
No 4
>KOG0550|consensus
Probab=99.83 E-value=5.1e-20 Score=170.96 Aligned_cols=173 Identities=25% Similarity=0.337 Sum_probs=149.9
Q ss_pred HHHhhccccCCCCCCh------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH
Q psy5660 22 VEGLQQLKYDPLENTP------EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95 (337)
Q Consensus 22 lealqaL~~dp~~~~~------~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~ 95 (337)
....|+|..||+..+- ....+..+++||.+|+.|+|+.|-++|++||.++|++.+.++-+|.|||.++.++|+.
T Consensus 224 ~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 224 NHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL 303 (486)
T ss_pred HHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc
Confidence 3455678888844332 2456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy5660 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK-HKEILRNERKQAQQV 174 (337)
Q Consensus 96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~-~~~~~~~~~k~~~~~ 174 (337)
++||.||+.|+++||.+.||+.++|+|++.+++|++|.++|+++.+.+.+ .+....+.+++.. ++....+.++. ..
T Consensus 304 ~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~yki--lG 380 (486)
T KOG0550|consen 304 REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKI--LG 380 (486)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHH--hh
Confidence 99999999999999999999999999999999999999999999999866 6777777666554 55566677776 45
Q ss_pred HHHHHHHHHHHHHHHHccccccc
Q psy5660 175 KKEEKEKERVLQIIRERKIKLAT 197 (337)
Q Consensus 175 ~~~~~~~~~l~~al~~rgi~~~~ 197 (337)
..+.+...+++++++.+.+.+||
T Consensus 381 i~~~as~~eikkayrk~AL~~Hp 403 (486)
T KOG0550|consen 381 ISRNASDDEIKKAYRKLALVHHP 403 (486)
T ss_pred hhhhcccchhhhHHHHHHHHhCC
Confidence 55667788899999999999998
No 5
>KOG0543|consensus
Probab=99.80 E-value=1.6e-18 Score=161.74 Aligned_cols=127 Identities=24% Similarity=0.291 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----------chHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
..+.|...++.||.+|+.|+|..|+..|.+|+..-... ..+.-.++.|+|+|+++++.|..|+..|+++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 45788999999999999999999999999999864321 1356789999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 163 (337)
|.++|+|+||+||+|+|++.+|+|+.|+..|+++++++|+|+.+...+..+.++.++.
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888887654433
No 6
>KOG0548|consensus
Probab=99.79 E-value=8.3e-19 Score=167.62 Aligned_cols=117 Identities=31% Similarity=0.519 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.|...++.||.+|+.|+|..|+.+|++||..+|+ .+.+|+|||+||.+||++..|+.||+.+++++|++.++|+|
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~R 431 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLR 431 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHH
Confidence 56899999999999999999999999999999999 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|.|+..+.+|+.|++.|+.++++||++.++...+.+|...
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764
No 7
>KOG4648|consensus
Probab=99.75 E-value=5.2e-18 Score=154.53 Aligned_cols=117 Identities=24% Similarity=0.283 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+|++||.||++|+|++||.||+++|.+.|. ++.+|.|||.+|++++.|..|..||..|+.+|..++|||-|
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~----NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSR 170 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH----NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSR 170 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCC----CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Confidence 45667899999999999999999999999999998 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.+...+|+..+|.+.|+.+|++.|++.++...++.+...
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSL 211 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcch
Confidence 99999999999999999999999999999998887776543
No 8
>KOG0547|consensus
Probab=99.73 E-value=6.2e-17 Score=153.19 Aligned_cols=131 Identities=27% Similarity=0.371 Sum_probs=108.7
Q ss_pred CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660 18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97 (337)
Q Consensus 18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~ 97 (337)
..|+.+-..++.- +.....|.++|++||.+|+.|+|++||++|++||+++|+ .++.|+|||+||..+|+|.+
T Consensus 96 gep~~~~~~a~~~----e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~----epiFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 96 GEPDEEQKKAMLK----EERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD----EPIFYSNRAACYESLGDWEK 167 (606)
T ss_pred CCcchhhhhccCh----HHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC----CchhhhhHHHHHHHHhhHHH
Confidence 3455555555543 455788999999999999999999999999999999998 46999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Q psy5660 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP--TDSTVIDLRTSCI 157 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P--~~~~~~~~l~~~~ 157 (337)
.+.||.+||+++|+++||++|+|.++..+|++++|+.... ++.|.- +|..+.....++.
T Consensus 168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~L 228 (606)
T KOG0547|consen 168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVL 228 (606)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHH
Confidence 9999999999999999999999999999999999998876 333332 3344444444443
No 9
>KOG0548|consensus
Probab=99.72 E-value=3.3e-17 Score=156.79 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
|..++++||.+|..|+|+.|+.+|++||.++|. +.++|+||++||..+|+|.+|+.|..+.++++|.++|+|.|.|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~----nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~G 77 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPT----NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKG 77 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCC----ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhH
Confidence 467899999999999999999999999999999 7799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.++..+|+|++|+..|.++|+++|+|+.+...+..+.
T Consensus 78 aa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 78 AALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999999998887
No 10
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=2.2e-15 Score=125.66 Aligned_cols=128 Identities=19% Similarity=0.170 Sum_probs=116.8
Q ss_pred ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
-|+--.-+++..+| + .+...|..++..|+|++|+.+|.+++..+|. ...+|.++|.++..+|++++|
T Consensus 11 ~~~~~~~~al~~~p------~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A 77 (144)
T PRK15359 11 IPEDILKQLLSVDP------E---TVYASGYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTA 77 (144)
T ss_pred CHHHHHHHHHHcCH------H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHH
Confidence 35566777888887 2 2557899999999999999999999999999 669999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+..+++|+.++|++..+++++|.|+..+|++++|+..|+++++++|++......++.++..
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888777654
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.66 E-value=1.9e-15 Score=144.33 Aligned_cols=116 Identities=25% Similarity=0.397 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
|..++.+|+.+|..|+|..|+.+|++||+++|+ +..+|.+||.|++++|++.+|+.++++|+.++|.+..+|+++|
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 345788999999999999999999999999998 5689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
.+++.+|+|++|+.+|+++++++|++..+...+..+..+.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888886554
No 12
>KOG4642|consensus
Probab=99.60 E-value=5.3e-15 Score=129.04 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
-.+.|..++++||.+|..++|..|+.+|.+||.++|. .+.+|.|||.||+++++++.+..||++|++++|+.++++
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~----~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h 81 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT----VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAH 81 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhcCCC----cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHH
Confidence 3478999999999999999999999999999999998 669999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKEN-----PTDSTVIDLRTSCINK 159 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~-----P~~~~~~~~l~~~~~~ 159 (337)
|.+|.+++....|++|+..++++..+. |.-..+-..+..++.+
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 999999999999999999999997662 1224566666666655
No 13
>KOG4626|consensus
Probab=99.59 E-value=8.8e-15 Score=141.99 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=132.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
|+++|| ..+.+|.+.||++-..+.|+.|+.+|.+|+.+.|+ .+.++.|+|-+|+..|..+-||+.|++||
T Consensus 244 AvkldP------~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn----~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 244 AVKLDP------NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN----HAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred hhcCCC------cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc----chhhccceEEEEeccccHHHHHHHHHHHH
Confidence 677888 88999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVKKEEKEKER 183 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~ 183 (337)
+++|+.+.||.++|.++-..|+..+|.++|.++|.+.|+++.+...++.+.+. ...+-+-+.++...-..-.+.-..
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nN 393 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNN 393 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999988765 333445555554433333444444
Q ss_pred HHHHHHHcc
Q psy5660 184 VLQIIRERK 192 (337)
Q Consensus 184 l~~al~~rg 192 (337)
|...++++|
T Consensus 394 La~i~kqqg 402 (966)
T KOG4626|consen 394 LASIYKQQG 402 (966)
T ss_pred HHHHHHhcc
Confidence 555555444
No 14
>KOG0376|consensus
Probab=99.56 E-value=4.6e-15 Score=141.11 Aligned_cols=118 Identities=21% Similarity=0.315 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.|+.++++||.+|+.+.|+.|+..|++||+++|+ ++.++.|||.++++.++|..|+.|+.+||+++|.+.|+|+|+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpn----ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rr 78 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPN----CAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRR 78 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCc----ceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeec
Confidence 5788999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
|.+++.++++.+|...++....+.|+.+.+...+.+|.....
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998877643
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=1.7e-13 Score=112.09 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=112.0
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+++..+| +.+......|..+++.|++++|+..|++++..+|. +..++.++|.++..+|++.+|+..++++
T Consensus 8 ~~l~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 8 DLLGLDS------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHcCCh------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665 56677899999999999999999999999999998 5699999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++++|.+...++.+|.++..+|++++|+.+++++++++|++........++..
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887776665543
No 16
>KOG0624|consensus
Probab=99.50 E-value=1.7e-13 Score=125.21 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=149.2
Q ss_pred HHHhhccccCCCCCChH------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH
Q psy5660 22 VEGLQQLKYDPLENTPE------ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95 (337)
Q Consensus 22 lealqaL~~dp~~~~~~------e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~ 95 (337)
-+--.+|++|||...+- .......+-+......++|.++++.+.+.++.+|..+.+.-..+--++.|+..-+++
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 34445788998776542 233344456667788899999999999999999986655555555678899999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy5660 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK-HKEILRNERKQAQQV 174 (337)
Q Consensus 96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~-~~~~~~~~~k~~~~~ 174 (337)
.+||..|.++|.++|+++.++.-+|.+|+.-..|++|+..|+++++.+++|..+...+.++++. ++...|+++|. +.
T Consensus 324 ~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKI--LG 401 (504)
T KOG0624|consen 324 GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKI--LG 401 (504)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHH--hh
Confidence 9999999999999999999999999999999999999999999999999999999999999887 55667899998 66
Q ss_pred HHHHHHHHHHHHHHHHccccccc
Q psy5660 175 KKEEKEKERVLQIIRERKIKLAT 197 (337)
Q Consensus 175 ~~~~~~~~~l~~al~~rgi~~~~ 197 (337)
.++.+.+.++.+|+++...+|||
T Consensus 402 VkRnAsKqEI~KAYRKlAqkWHP 424 (504)
T KOG0624|consen 402 VKRNASKQEITKAYRKLAQKWHP 424 (504)
T ss_pred hcccccHHHHHHHHHHHHHhcCC
Confidence 77888999999999999999999
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=8.1e-13 Score=135.12 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
+....|..++++||.+|+.|+|+.|+.+|+++|...|+ ..+|.|+|.|++++|+|++|+.+|++||+++|++.++
T Consensus 122 ~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a 196 (615)
T TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196 (615)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34567889999999999999999999999999999985 3689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
++++|.++..+|++++|+..+..++.+++.+.
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998888876554
No 18
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.49 E-value=1.7e-12 Score=108.10 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.-+.+...|..++..|++++|...|+-....+|. +...|.|+|.|+..+|+|.+||..|.+|+.++|+++.++++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 66778888999999999999999999999999999 77999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.|.|++.+|+.+.|.+.++.++...-.+++-..+..++
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A 146 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA 146 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 99999999999999999999999875555544444443
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.48 E-value=2.1e-12 Score=120.49 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=111.2
Q ss_pred ChhHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660 19 SPLVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97 (337)
Q Consensus 19 ~~~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~ 97 (337)
...++-+. .|... ..++...+..+.++|..+...|++.+|+..|+++++.+|+ .+.+|.++|.++..+|++++
T Consensus 43 e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 43 EVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD----MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred HHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCCHHH
Confidence 34455553 34332 2566788999999999999999999999999999999998 56999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
|+..+++|++++|++..+++++|.++...|++++|++.++++++++|++..
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999999999999999999873
No 20
>KOG0545|consensus
Probab=99.47 E-value=1.5e-12 Score=114.23 Aligned_cols=112 Identities=21% Similarity=0.276 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------ccCCch------HHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------KCADND------VNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------~p~~~~------~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
......+.+.||.+|+.|+|++|...|..||.. +|.+++ ....++.|.+.|++..|+|-++++.|.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345668899999999999999999999999853 565543 466789999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
..|...|.|+||||++|+|+...=+.++|...+.++|+++|.-...
T Consensus 255 eiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999999999999999985443
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.45 E-value=1.7e-12 Score=114.03 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=111.3
Q ss_pred CChhHHHhhc-cccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH-HHccC-
Q psy5660 18 MSPLVEGLQQ-LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN-FFLKN- 94 (337)
Q Consensus 18 ~~~~lealqa-L~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~-~~lg~- 94 (337)
....+.+++. |..+| +.++.+...|..+...|++++|+.+|++|+.+.|+ +..++.++|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~P------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~----~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 55 PEAQLQALQDKIRANP------QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE----NAELYAALATVLYYQAGQH 124 (198)
T ss_pred HHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCC
Confidence 3445555554 77788 67889999999999999999999999999999999 569999999985 67787
Q ss_pred -HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 95 -YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 95 -~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
+.+|+..+++|++++|++..+++.+|.++..+|++++|+.+++++++++|.+..-...+..
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999876544444433
No 22
>KOG4626|consensus
Probab=99.42 E-value=1.3e-12 Score=127.14 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.|.++.+.|..+-.+|++++|+.+|.+||.++|. .+.+|+|+|..+-.+|+...|+.++.+||.++|....|+-+
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~----fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT----FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch----HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 44444445555555555555555555555555554 44555555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|.++...|+..+|++.|+.+|++.|+.+.+.-.+..+.
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 555555555555555555555555555555544444433
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.36 E-value=5.2e-11 Score=121.83 Aligned_cols=117 Identities=20% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..++..|++++|+..|.++++.+|. ....|.++|.++..+|++++|+.++++|++++|++..+++.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 404 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH 404 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 67788999999999999999999999999999998 56889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888777776654
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=8.4e-11 Score=118.86 Aligned_cols=126 Identities=13% Similarity=0.157 Sum_probs=111.0
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
+-+++..+| ..+..+...|..+...|++++|+..|.+|++++|+ ++.+|+++|.++..+|++++|+..++
T Consensus 327 ~~~Al~ldP------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 327 AIKATELDH------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI----SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred HHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445677887 66778889999999999999999999999999999 56889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN-PTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~-P~~~~~~~~l~~~~~~ 159 (337)
+|++++|.+..+++.++.+++..|++++|+.++++++... |+++.+...++.+...
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 9999999999888778888888999999999999999875 7788777777776544
No 25
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.32 E-value=6.7e-12 Score=90.69 Aligned_cols=66 Identities=27% Similarity=0.476 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKP 110 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P 110 (337)
|..+...|+.++..|+|++|+.+|+++|+.+|+ ++.+|+|+|.|+..+| ++.+|+.++++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445555555555555555555555555555555 4455555555555555 45555555555555554
No 26
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.30 E-value=7.9e-11 Score=93.43 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKL 117 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~ 117 (337)
+..+...|..+++.|+|.+|+..|.+++...|+++. ...++.++|.++++.|+++.|+..++.++..+|++ ..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 356788999999999999999999999999886432 35788999999999999999999999999999886 57899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
.+|.++..+|++++|+..++++++..|++..+...
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 99999999999999999999999999998876554
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.29 E-value=8.9e-11 Score=124.68 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|..+.+.|++++|+..|.+++..+|+ +..++.|+|.++..+|++++|+..+++|++++|++..+++++|
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd----~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN----NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456777888888888888888888888888887 4577888888888888888888888888888888888888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++..+|++++|+.+|+++++++|++..+....+.+...
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~ 723 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ 723 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence 888888888888888888888888887777666665544
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.9e-10 Score=116.23 Aligned_cols=117 Identities=19% Similarity=0.112 Sum_probs=101.1
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHH---------HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNF---------KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~---------k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~ 96 (337)
+++..|| ..+..+...|..++ ..+++.+|+..+++|++++|+ ++.++.++|.++...|+++
T Consensus 286 ~Al~ldP------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~----~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 286 QCVNMSP------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN----NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHhcCC------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHH
Confidence 4566676 44556666666554 234589999999999999999 5688999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
+|+..+++|++++|++..+++.+|.++...|++++|+.+++++++++|.+......
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999999999999999999999999998765433
No 29
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=1.5e-11 Score=88.78 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENP 144 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P 144 (337)
++..|.++|.+++.+|+|.+|+..+++|++++|+++.+++++|.|+..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46889999999999999999999999999999999999999999999999 79999999999999998
No 30
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=3e-10 Score=97.33 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
.+....+..+...|..+...|++++|+.+|.+++...++... ...++.++|.++.++|++++|+..+.+|+.+.|.+..
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 455688899999999999999999999999999998765332 4578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhCCCC
Q psy5660 115 VKLRAAQCLFHLKK--------------FEDCTHLCDELLKENPTD 146 (337)
Q Consensus 115 a~~r~a~a~~~lg~--------------~~eA~~~~~~al~l~P~~ 146 (337)
++..+|.++..+|+ +.+|++++++++.++|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999988 566666666666666665
No 31
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.22 E-value=3.8e-10 Score=94.02 Aligned_cols=93 Identities=10% Similarity=0.106 Sum_probs=86.5
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
-...|+++++++|+ . +.++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|+++
T Consensus 12 ~~~~~~~al~~~p~------~-~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 12 PEDILKQLLSVDPE------T-VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHcCHH------H-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35689999999986 2 5679999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q psy5660 140 LKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 140 l~l~P~~~~~~~~l~~~~~~ 159 (337)
+.++|++..+...++.+...
T Consensus 85 l~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHH
Confidence 99999999999999988765
No 32
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=2.7e-10 Score=84.36 Aligned_cols=99 Identities=28% Similarity=0.474 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
.+...|..++..|++.+|+..++++++..|. ...++.++|.++...|+++.|+..+++++...|.+..+++.+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD----NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHH
Confidence 4678899999999999999999999999987 347889999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 123 LFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+...|++++|...+.++++++|.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999988774
No 33
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.21 E-value=4.7e-11 Score=89.95 Aligned_cols=83 Identities=28% Similarity=0.432 Sum_probs=74.9
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~ 133 (337)
+|+|+.|+..|.++++..|.++ ...++.++|.|++++|+|.+|+..+++ ++.+|.+...++..|+|+..+|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6899999999999999999744 567788899999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHH
Q psy5660 134 HLCDEL 139 (337)
Q Consensus 134 ~~~~~a 139 (337)
..++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999875
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=2.2e-09 Score=93.90 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYPKVKLR 118 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~ka~~r 118 (337)
+..+...|..++..|++++|+..|.++++..|. ...++.++|.++...|++++|+..+.+++... +.....++.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 345555666666666666666666666666555 23555666666666666666666666666542 334455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|.++...|++++|...+.++++.+|++..+...+..+.
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 666666666666666666666666666655554444443
No 35
>KOG0624|consensus
Probab=99.18 E-value=3.9e-10 Score=103.52 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..++.+.+.|+.++..|++.+|+..|-.|++.+|+ +-.+++.||.+|+.+|+-..|+.|+.++|++.|+..-|...
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN----NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 66788899999999999999999999999999998 77999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
+|.+++.+|.+++|...|+..|..+|++.....
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e 144 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE 144 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence 999999999999999999999999997754433
No 36
>PLN02789 farnesyltranstransferase
Probab=99.18 E-value=5.3e-10 Score=105.08 Aligned_cols=116 Identities=16% Similarity=0.044 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHhhCCCCHHH
Q psy5660 39 ELATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY--RSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~--~~Al~d~~~Al~l~P~~~ka 115 (337)
+....+..+|..+.+.| ++++|+.++++++..+|. +..+|.+|+.+..++|+. .+++..++++++++|+|..|
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk----nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~A 144 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK----NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHA 144 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc----chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHH
Confidence 45567778888888887 578999999999998888 567899999888888874 67888888999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
|..++.++..+|++++|+++|.++++++|.|..+...+..+..
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999888877776643
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=3e-09 Score=93.08 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
...+..+...|..++..|++++|+..+.++++..|. ...++.++|.++..+|++++|+..+++++++.|.+..+++
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 356888999999999999999999999999999988 5688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKEN--PTDSTVIDLRTSCI 157 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l~~~~ 157 (337)
.+|.++...|++++|+..+++++... +........++.+.
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 99999999999999999999999863 33344444444443
No 38
>KOG1155|consensus
Probab=99.17 E-value=1.6e-09 Score=102.84 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=96.1
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
.-+||++|| ....++--.|-++...++-..|+..|++|++++|.| -.+|+.+|.+|--++..-=|+-.++
T Consensus 353 FkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D----yRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 353 FKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD----YRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh----HHHHhhhhHHHHHhcchHHHHHHHH
Confidence 344677777 666777777888888888888888888888888873 4777778888888888777888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|+++.|++...|..+|.||.++++.++|+++|++++...-.+..+...++++.+.
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888887766666666666666554
No 39
>KOG1126|consensus
Probab=99.17 E-value=8.6e-11 Score=115.56 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..++.|...||.+--+++++.||+++.+||+++|+ .+-+|.-+|.=+.....|+.|...++.||.++|.+..|||-
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~----faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR----FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc----cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 66788999999999999999999999999999998 55777777877778888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.+|++.++++.|.-.+++|++++|.|..+.-..+.++.+
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence 88888888888888888888888888887777666666554
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=2.3e-09 Score=110.06 Aligned_cols=126 Identities=4% Similarity=-0.115 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|......|+|++|...+..+++..|+ +..++.|+|.+..+++++++|+..+++++..+|++..+++.+|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd----~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD----SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 667788999999999999999999999999999 7799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK---HKEILRNERKQ 170 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~ 170 (337)
.++.++|++++|+..|++++..+|++..++..++.+.+. ..++...+++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999998888887765 33444444444
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.14 E-value=1.5e-09 Score=115.50 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=99.0
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l 126 (337)
.+......|++++|+..|.++++.+|+ ..+|.|+|.++.++|++++|+..+++|+.++|++..++..+|.++...
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 344445559999999999999999984 368899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 127 KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 127 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|++++|+..|+++++++|++..+...++.+...
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988888766
No 42
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=1.9e-09 Score=94.65 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=94.7
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCC--HH
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL-FHLKK--FE 130 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~-~~lg~--~~ 130 (337)
.++.++++..+.+++..+|+ +...|.++|.+++.+|+++.|+..+++|++++|++..++..+|.++ ...|+ ++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~----~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ----NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 56789999999999999999 5689999999999999999999999999999999999999999985 67787 59
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 131 DCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.+.++++++++|++..+..+++.+...
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~ 156 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFM 156 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 99999999999999999999999887665
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=2.7e-09 Score=99.57 Aligned_cols=105 Identities=18% Similarity=0.098 Sum_probs=96.9
Q ss_pred CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
+..+.++..+++.|...+.+++..+..|+++|.++..+|++..|+.++++|++++|+++.+|+.+|.++..+|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788999999999877766666889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 135 LCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 135 ~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|+++++++|++..+...++.+...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999988888877644
No 44
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.11 E-value=4.2e-09 Score=89.83 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
....+..+...|..++..|+|++|+..|.+++.+.++. ...+.+|.|+|.++..+|++++|+..|.+|+.++|.+..++
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34678899999999999999999999999999886642 22457899999999999999999999999999999999999
Q ss_pred HHHHHHHH-------hcCCHH-------HHHHHHHHHHhhCCCCH
Q psy5660 117 LRAAQCLF-------HLKKFE-------DCTHLCDELLKENPTDS 147 (337)
Q Consensus 117 ~r~a~a~~-------~lg~~~-------eA~~~~~~al~l~P~~~ 147 (337)
..+|.++. .+|+++ +|+.++++++..+|++.
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999888 777877 55555556667777654
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=6.3e-09 Score=93.26 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK--- 114 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k--- 114 (337)
...+..+...|..++..|+|+.|+..|.+++...|.++. ...++.++|.+++.+|++++|+..++++++..|++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 366788999999999999999999999999999997542 3467899999999999999999999999999998876
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHL--------KKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 115 a~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+++.+|.++... |++++|+..+++++..+|++......+..+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 799999999887 899999999999999999997665544433
No 46
>KOG1155|consensus
Probab=99.11 E-value=2.3e-09 Score=101.77 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=105.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
--||-|--.++.++|+.+|++|+.++|. ...+|.-+|.=++.++|-..|+..+++|++++|.+.+|||.+|++|.-
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPK----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI 410 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcc----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH
Confidence 4578888888999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++...=|+-+|++++++-|++..+...+++|..+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877
No 47
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.10 E-value=5.8e-09 Score=91.27 Aligned_cols=102 Identities=17% Similarity=0.026 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+.+.+....++|..|+..|++..|...+.+||+.+|+ ...+|.-||..|.++|..+.|-+.|++|++++|++...
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs----~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV 105 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPS----YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV 105 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch
Confidence 45578889999999999999999999999999999998 66888899999999999999999999999999998887
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+.+.|.-++..|++++|..++++++.
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 77777777777777777777777775
No 48
>KOG1126|consensus
Probab=99.09 E-value=1.4e-09 Score=107.21 Aligned_cols=121 Identities=13% Similarity=0.224 Sum_probs=73.4
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+|+..|| ..+-+|--+|-++.....|+.|..+|+.||..+|. +-.+|+.+|.+|+++++++.|.-.+++|
T Consensus 446 RAiQldp------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r----hYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 446 RAIQLDP------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR----HYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred HhhccCC------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch----hhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 3455665 45556666666666666666666666666666665 4456666666666666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+++||.|..-....|..+.++|+.++|+..+++|+.+||.|+-.....+.+
T Consensus 516 ~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 516 VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI 566 (638)
T ss_pred hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 666666666666666666666666666666666666666665444444433
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=3.3e-09 Score=92.85 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=107.7
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
++|..|| +...++.-++-.|.+.|..+.|-+.|++|++++|+ +..+++|-|.-...+|.|++|...+++|
T Consensus 60 kAL~~DP------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~----~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 60 KALEHDP------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN----NGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred HHHHhCc------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC----ccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 4677788 77888899999999999999999999999999999 6799999999999999999999999999
Q ss_pred HhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 106 LKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 106 l~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+. +| ....++-++|.|.++.|+++.|..+++++|+++|+++....-+.+..
T Consensus 130 l~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~ 183 (250)
T COG3063 130 LA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH 183 (250)
T ss_pred Hh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence 96 44 44689999999999999999999999999999999987765554443
No 50
>KOG0547|consensus
Probab=99.08 E-value=3e-09 Score=101.63 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
+..|+++.-.|..+|-.|++..|...+.++|.++|.+. .+|..||++|+...+-.+-..++++|..+||.|+..||
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhH
Confidence 34588999999999999999999999999999999854 66999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
.+|+.++-+++|++|+..|+++++++|+|.-..-.+.
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 9999999999999999999999999999865544443
No 51
>PRK15331 chaperone protein SicA; Provisional
Probab=99.07 E-value=3.7e-09 Score=88.56 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
+++.-+.....|-.+|.+|+|++|...|+-....+|. +...+..+|+|+..+|+|++|+..|..|..++++++...
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~----n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY----NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 3466778888999999999999999999999999998 557899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
|+.|.|++.+|+...|..++..++. .|.+..+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 9999999999999999999999988 4554433
No 52
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.06 E-value=6.9e-10 Score=79.13 Aligned_cols=64 Identities=17% Similarity=0.352 Sum_probs=48.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 84 NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 84 nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.+|..++..|+|++|+..++++++.+|.+..+++.+|.++..+|++++|+.+|+++++++|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4677777778888888888888888888888888888888888888888888888888877764
No 53
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.06 E-value=5.5e-09 Score=107.68 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHhCcHHH----HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRN----AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~----Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+..+...|..++..|++.+ |+..|+++++.+|+ ...++.++|.++..+|++++|+..+++++.++|++..+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~----~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a 320 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD----NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYV 320 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 35566678888888888875 78888888888887 45788888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+..+|.++..+|++++|+..|++++..+|++......++.+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a 361 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 88888888888888888888888888888876544433333
No 54
>KOG1125|consensus
Probab=99.05 E-value=4.2e-10 Score=109.28 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..++..--+|-.++-.|+|++|+.||+.||..+|+ +..+|+.+|+.+-.-.+..+||..|++|+++.|.++++.|+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn----d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN----DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc----hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 34566678999999999999999999999999999 66999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+|.+++.+|.|++|..++-.+|.+.+.
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999998765
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.05 E-value=1e-08 Score=105.62 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS----CLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~----Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
...|..++..|++++|+..|.++++..|+ ...++.++|.++..+|++.+ |+..+++|++++|++..++..+|
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~----~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg 291 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLD----GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34578888999999999999999999998 46889999999999999996 89999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++...|++++|+..++++++++|++..+...++.+...
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ 330 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877776544
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.05 E-value=8e-09 Score=84.28 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=87.4
Q ss_pred HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 62 INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 62 ~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+.|.+++..+|. +.....++|.+++..|++.+|+..+++++.++|.+..+++++|.++..+|++++|+.++++++.
T Consensus 4 ~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 4 ATLKDLLGLDSE----QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hhHHHHHcCChh----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999998 5577889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q psy5660 142 ENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 142 l~P~~~~~~~~l~~~~~~ 159 (337)
++|.+......++.+...
T Consensus 80 ~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLA 97 (135)
T ss_pred cCCCChHHHHHHHHHHHH
Confidence 999999998888887665
No 57
>KOG1308|consensus
Probab=99.04 E-value=1.4e-10 Score=106.40 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.|...+-++..++..|.++.|++.|+.||.++|. .+.+|.+||.++++++....|+.||..|++++|+..+.|-.
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 56777788888899999999999999999999999 88999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++.+...+|++.+|..++..+.+++-+ ......+..+
T Consensus 188 rg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV 224 (377)
T KOG1308|consen 188 RGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEV 224 (377)
T ss_pred hhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHh
Confidence 999999999999999999999998632 3333444443
No 58
>KOG0550|consensus
Probab=99.04 E-value=3.1e-10 Score=106.30 Aligned_cols=110 Identities=27% Similarity=0.388 Sum_probs=98.9
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660 22 VEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTD 101 (337)
Q Consensus 22 lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d 101 (337)
..+++..-.. ...+...|+..+++||..+++++|..|+..|+.||++.|+ ++..|.|||++++.+|+|++|+.+
T Consensus 32 ~~~~~~~~s~--~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd----~a~yy~nRAa~~m~~~~~~~a~~d 105 (486)
T KOG0550|consen 32 TAATSPEYSF--SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPD----NASYYSNRAATLMMLGRFEEALGD 105 (486)
T ss_pred hhccCccccc--cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCcc----chhhhchhHHHHHHHHhHhhcccc
Confidence 3444444433 2567789999999999999999999999999999999999 689999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5660 102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~ 137 (337)
+++.++++|...+++.|.++|+..++..-+|...++
T Consensus 106 ar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 106 ARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999986665
No 59
>KOG1173|consensus
Probab=99.02 E-value=2.7e-09 Score=103.49 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=110.2
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-ch--HHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-ND--VNAQLYNNRAASNFFLKNYRSCLTD 101 (337)
Q Consensus 25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-~~--~~~~~~~nra~~~~~lg~~~~Al~d 101 (337)
.+|+...| ...-.+.+.|-++|..+.|.+|+.++..++...+.. ++ .-...+.|+|.++.+++.|.+||..
T Consensus 404 ~~A~ai~P------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 404 KQALAIAP------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHhcCC------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 45666666 556778899999999999999999999998543321 11 2456799999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+++||.+.|+++.+|-..|.++..+|+++.|++.|.++|.++|+|.-+..+++.+.+
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888876654
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.99 E-value=1.8e-08 Score=110.25 Aligned_cols=125 Identities=10% Similarity=0.110 Sum_probs=104.5
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH----------HHHHHHHHHHHHHccCHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN----------AQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~----------~~~~~nra~~~~~lg~~~ 96 (337)
++..+| ..+..+...|..+++.|++++|+.+|+++++..|++.... ..+..++|.++++.|++.
T Consensus 295 aL~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~ 368 (1157)
T PRK11447 295 AVRANP------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLA 368 (1157)
T ss_pred HHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHH
Confidence 455555 4467788899999999999999999999999988754211 112345688889999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|+..+++|++++|.+..+++.+|.++...|++++|+++|+++++++|++..+...+..+.
T Consensus 369 eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 369 QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988776665554
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=1.3e-08 Score=104.73 Aligned_cols=121 Identities=7% Similarity=-0.134 Sum_probs=108.1
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+++.++| +.+.++.+.++.+.+.+++++|+..+.+++..+|+ ++..++++|.|..++|+|++|+..|+++
T Consensus 111 ~~~~~~P------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 111 GIHQRFP------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred HHHhhCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3466777 78899999999999999999999999999999999 7799999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP-TDSTVIDLRTSC 156 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~ 156 (337)
+..+|++.+++..+|.++..+|+.++|...|++++.... ..+.+...+.++
T Consensus 181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (694)
T PRK15179 181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDL 232 (694)
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999998853 444434444443
No 62
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.97 E-value=1.2e-07 Score=90.99 Aligned_cols=117 Identities=11% Similarity=-0.022 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP----- 113 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~----- 113 (337)
..+..+...|..+++.|++++|+..|.++++..|. ...++.+++.++.+.|++++|+..++++++.+|.+.
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34455666777777777777777777777776554 445666677777777777777777777766666542
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+..+|.++...|++++|+..++++++++|++..+...++.+...
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 2344566666777777777777777777777666665555555443
No 63
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=2.4e-08 Score=93.87 Aligned_cols=127 Identities=9% Similarity=0.022 Sum_probs=106.3
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDC 102 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~ 102 (337)
.+-+|.|.+ +..+.+--.--.+.+.+++.+|+..++++|.++|. +.++|.+|+.++..+| ++.+++..+
T Consensus 26 ~~~~i~y~~------~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~ 95 (320)
T PLN02789 26 PVVPIAYTP------EFREAMDYFRAVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFA 95 (320)
T ss_pred cccceeeCH------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 444566643 33333333333456678999999999999999999 6799999999999999 689999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 103 QIALKLKPDYPKVKLRAAQCLFHLKKF--EDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~--~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
+++++.+|++..+|..++.++..+|+. ++++.+++++++++|.|-.+...++.+....
T Consensus 96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 999999999999999999999999974 7899999999999999999988888776653
No 64
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.95 E-value=4.9e-09 Score=96.73 Aligned_cols=117 Identities=17% Similarity=0.204 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|+.+.+.|++++|+.+|.+|++.+|+ +..+..+++.++...|++.++...+....+..|+++..+..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45677788888888889999999999999999888 44677778888888888888888787777777778778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++..+|++++|+.+++++++.+|+|+.....++.+...
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHHHhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999998888888887665
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=5.2e-08 Score=86.82 Aligned_cols=132 Identities=15% Similarity=0.138 Sum_probs=112.4
Q ss_pred CChhHHHhhccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH
Q psy5660 18 MSPLVEGLQQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 18 ~~~~lealqaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~ 96 (337)
..+-+.+++.+. +.| .....+..+|-..++.|+|..|+..+.++....|+ ...+|+-+|.++.++|+++
T Consensus 82 a~~~l~~~~~~~~~~~------~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~----d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 82 ADSSLAVLQKSAIAYP------KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT----DWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred ccchHHHHhhhhccCc------ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC----ChhhhhHHHHHHHHccChh
Confidence 334455555533 333 34445556999999999999999999999999999 5589999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|-..+.+|+++.|+.+.++-++|..++-.|+++.|...+..+...-+.+..+...+..+...
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998888888888877776654
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.93 E-value=7.9e-09 Score=73.59 Aligned_cols=64 Identities=22% Similarity=0.301 Sum_probs=59.6
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ 113 (337)
.+|..+++.|+|++|+..|+++++..|. +..++..+|.|+..+|++++|+..++++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5799999999999999999999999998 789999999999999999999999999999999874
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.92 E-value=1.1e-07 Score=91.21 Aligned_cols=115 Identities=11% Similarity=-0.046 Sum_probs=100.3
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
++..+| ..+..+...|+.++..|++.+|+..+++++...+........++.++|.++...|++++|+..+.+++
T Consensus 61 al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 61 MLKVDP------ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHhcCc------ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455565 45678889999999999999999999999986443333355788999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+.+|.+..++..++.++...|++++|++.++++++.+|.+.
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999888763
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.92 E-value=5.1e-08 Score=89.16 Aligned_cols=112 Identities=8% Similarity=0.012 Sum_probs=97.2
Q ss_pred HHHHHHHHHH-HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHH
Q psy5660 42 TTYKDEGNFN-FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKL 117 (337)
Q Consensus 42 ~~~k~~Gn~~-~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~ 117 (337)
....+.+..+ ++.|+|++|+..|.+.+...|+.. ..+.+++.+|.+++..|+|.+|+..++++++..|+ ...+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4556666665 678999999999999999999754 24578899999999999999999999999998887 468899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
.+|.++..+|++++|...|+++++..|++..+.....
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~ 258 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK 258 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 9999999999999999999999999999886655443
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.7e-08 Score=90.58 Aligned_cols=128 Identities=17% Similarity=0.219 Sum_probs=109.5
Q ss_pred ChhHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---C
Q psy5660 19 SPLVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---N 94 (337)
Q Consensus 19 ~~~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~ 94 (337)
+..+..|+ .|..|| +.++.+.-.|..|+..|++..|...|.+|+++.|+ ++.++.-.|.+++... .
T Consensus 139 ~~l~a~Le~~L~~nP------~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----n~~~~~g~aeaL~~~a~~~~ 208 (287)
T COG4235 139 EALIARLETHLQQNP------GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----NPEILLGLAEALYYQAGQQM 208 (287)
T ss_pred HHHHHHHHHHHHhCC------CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCCcc
Confidence 34455555 377788 78899999999999999999999999999999999 5577777887777553 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
-.++...+++|+++||.|+.+.+.+|..+++.|+|.+|+..++..+...|.+..-..+..+.
T Consensus 209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 209 TAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999887666555443
No 70
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.91 E-value=6.6e-08 Score=101.17 Aligned_cols=120 Identities=19% Similarity=0.219 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-------------------------------chHHHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-------------------------------NDVNAQLYNNRAA 87 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-------------------------------~~~~~~~~~nra~ 87 (337)
..+..+...|..+++.|+|++|+..|.++++..|.+ ......++..+|.
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 133 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL 133 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHH
Confidence 344566667777777777777777777777655432 1123455666777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 88 ~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++..+|++++|+..+++++..+|++..+++.+|.++...|++++|+..++++++.+|.+..+...++.+..
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (899)
T TIGR02917 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777666666655543
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.4e-07 Score=84.53 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCC
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL--------KNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l--------g~~~~Al~d~~~Al~l~P~ 111 (337)
....+...|..+++.|++++|+..|.++++..|+++.. ..+++++|.++..+ |++..|+..+++++..+|+
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch-HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 44567889999999999999999999999999986643 34688899999987 8999999999999999999
Q ss_pred CHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHH
Q psy5660 112 YPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTDS---TVIDLRTSCINK 159 (337)
Q Consensus 112 ~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~~~~~~ 159 (337)
+..++ +.+|.+++..|++.+|+..+++++...|+++ .+...++.+...
T Consensus 148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 86442 4678889999999999999999999988764 555666665544
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.89 E-value=7.1e-08 Score=100.92 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+...+..+...|..++..|++++|+..|.++++.+|+ ...++..+|.+++..|++.+|+..++++++.+|.+..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 195 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR----SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 44567888999999999999999999999999999998 44788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
++.+|.++...|++++|+.+|++++.++|++..+...+..+.
T Consensus 196 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 196 LLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL 237 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999987766665554
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.88 E-value=3.5e-08 Score=103.51 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..+...|++.+|+..|+++++..|. +..++.++|.++...|++.+|+..++++++.+|++.. ++.
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~ 121 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ----NDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLA 121 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHH
Confidence 44667889999999999999999999999999998 4577889999999999999999999999999999999 999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+|.++...|++++|+..++++++++|++..+...+..+..
T Consensus 122 la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 122 LAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999988776666543
No 74
>KOG1310|consensus
Probab=98.86 E-value=1.1e-08 Score=98.65 Aligned_cols=108 Identities=27% Similarity=0.324 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---KNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---g~~~~Al~d~~~Al~l~P~~~ka 115 (337)
+.++.++++||..|-.+....|+..|.+++...|. ...+|.|||+++++. |+--.|+.||..|+++||...||
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 78899999999999999999999999999999998 789999999999975 57778999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
+++++.|+..++++.+|+++...+....|.+....
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 99999999999999999999887777788665443
No 75
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.85 E-value=5.8e-08 Score=106.28 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|..+.+.|++++|+..|+++++..|+ +..++.++|.++..+|++++|+..++++++.+|++..++.++|
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~----~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPG----NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345677899999999999999999999999998 5588899999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.++..+|++++|++.|++++...|++.
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999998876554
No 76
>KOG0553|consensus
Probab=98.85 E-value=2.2e-08 Score=90.84 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.-.-+-|.-+++-++|++|+..|.+||+++|+|+-.|.++|.+|.+||.|+.|+++|+.++++||....++..++.+.-.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 33445677788899999999999999999999999999999999999999999999999999999999998888887654
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy5660 160 ---HKEILRNERKQAQQVKKEEKEKERVLQIIRER 191 (337)
Q Consensus 160 ---~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~r 191 (337)
..++.+.++|....+...+.-+..|..+-+++
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 34455556777666665555555554444443
No 77
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=2.6e-07 Score=81.37 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP--- 113 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~--- 113 (337)
|+..+..+...|..++..|+|.+|+..|++.+..-|..+ ....+...+|.++++.|+|..|+..+++-++..|++.
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~ 79 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD 79 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 456788999999999999999999999999999988754 4667888999999999999999999999999999875
Q ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLK-----------KFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 114 ka~~r~a~a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.|+|.+|.+++.+. ...+|+..++..++..|++.-+......+.
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 68999999987653 345899999999999999965554444433
No 78
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.83 E-value=2.3e-08 Score=72.77 Aligned_cols=69 Identities=29% Similarity=0.494 Sum_probs=50.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 86 a~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+.++++.++|+.|+..+++++.++|.++.+++.+|.++..+|++.+|+..++++++.+|++..+..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 345667777777777777777777777777777777777777777777777777777777766655443
No 79
>KOG4555|consensus
Probab=98.82 E-value=1.1e-07 Score=76.24 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---- 113 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---- 113 (337)
-+.+..+--+|-.+...|+.+.|++.|+++|.+.|. ++.+|+|||.++.-.|+..+|++|.++|+++.....
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 356667778899999999999999999999999999 789999999999999999999999999999965443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
.+|..+|..|..+|+.+.|...|..+-++...
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 57889999999999999999999999988544
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.82 E-value=5.9e-07 Score=81.40 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka 115 (337)
..+..+...|..++..|+|++|+..|.+.+...|.. .....+..++|.+++++++|.+|+..+++.+++.|++. .|
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 355667889999999999999999999999999975 34556678999999999999999999999999999875 68
Q ss_pred HHHHHHHHHhcCC------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKK------------------FEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 116 ~~r~a~a~~~lg~------------------~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.+|.++..+++ ..+|+..++..++..|++.-+.....++...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 8999999766641 3578899999999999986655544444333
No 81
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.81 E-value=1.5e-08 Score=72.70 Aligned_cols=66 Identities=24% Similarity=0.473 Sum_probs=54.1
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
++.|+|++|+..+++++..+|++..+++.+|.|++..|++++|...+++++..+|+++.+..++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 467888888888888888888888888888888888888888888888888888888777766654
No 82
>KOG1125|consensus
Probab=98.79 E-value=6.1e-08 Score=94.44 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=109.8
Q ss_pred hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------------
Q psy5660 20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------------ 75 (337)
Q Consensus 20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------------ 75 (337)
..|..-++++.|| +.++++.-+|......++-..||..+.++++++|++.
T Consensus 304 A~LafEAAVkqdP------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 304 AALAFEAAVKQDP------QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred HHHHHHHHHhhCh------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455555677777 7888888888888888888888888888888766510
Q ss_pred -------------------------------------------------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 76 -------------------------------------------------DVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 76 -------------------------------------------------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
.+.+.++.-+|..|...|+|++|+++++.||
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL 457 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL 457 (579)
T ss_pred HHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH
Confidence 1456777788999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
..+|++...|-|+|-.+..-.+..+|+..|++||++.|+...++..++...
T Consensus 458 ~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 458 QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 999999999999999999999999999999999999999877776666543
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.79 E-value=2.2e-07 Score=79.19 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=94.2
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCL 123 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~ 123 (337)
+.|.+|-.+.|..+...+..-+.....+. .+.+|.+.|.++..+|++++|+..+++|+.+.|+. ..+++++|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 45667778888888888866666555433 78899999999999999999999999999997763 45899999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+|++++|+..|+++++++|.+......++.+...
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 999999999999999999999998887777766553
No 84
>KOG2076|consensus
Probab=98.78 E-value=2.8e-07 Score=93.83 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
...+..++|.+|..|+++.|.....+.|.++|. +..+|..+|.||..+|+..+|+...-.|--++|++..-|.+.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 678889999999999999999999999999998 6799999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
....++|.+..|.-+|.++++.+|.|.+....+..+.+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999999999999999988776655555444
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=3.8e-08 Score=94.17 Aligned_cols=93 Identities=17% Similarity=0.299 Sum_probs=83.6
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
+-++|..+| ..+..+..+|..+++.|+|++|+..+.+|+.++|. .+.+|.++|.+++.+|+|.+|+..++
T Consensus 25 ~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~----~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 25 YTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPS----LAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344677777 55788999999999999999999999999999998 66899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhc
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~l 126 (337)
+|++++|++..+...++.|...+
T Consensus 95 ~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 95 KGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999988888876665
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.77 E-value=1.3e-07 Score=99.26 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
....+...|..+...|++++|+..+++++...|. +..++.++|.++...|++++|+..+++|+.++|++..+++.+
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~----n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG----NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 3456678899999999999999999999999999 568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
|.+++.+|++++|...++++++..|+++.+..+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999966553
No 87
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=2.1e-07 Score=76.42 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=102.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP- 113 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~- 113 (337)
..|...+..+...|...++.|+|..|++.++.....-|..+ ....+..+++-+|++.++|..|+..+++-|+++|++.
T Consensus 4 ~~~~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 4 VVPDKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44556678889999999999999999999999888887543 3568889999999999999999999999999999986
Q ss_pred --HHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 114 --KVKLRAAQCLFHLKK---------------FEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 114 --ka~~r~a~a~~~lg~---------------~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
-|+|++|.+++.... ...|...++..++.-|++.-+...
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 688999999999887 899999999999999998766543
No 88
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=7e-07 Score=74.57 Aligned_cols=81 Identities=11% Similarity=0.033 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
...+|. .|.-++..|++++|...++.+..++|.+...|+.+|.|+..+|+|.+|+..|.+++.++|+++......+.|.
T Consensus 35 l~~lY~-~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYR-YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 334444 8999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
-.
T Consensus 114 L~ 115 (157)
T PRK15363 114 LA 115 (157)
T ss_pred HH
Confidence 76
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.71 E-value=9.1e-08 Score=69.55 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=64.0
Q ss_pred HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
.+.+++.++|+.|+.++++++..+|+ ...++.++|.|+.++|++.+|+.+++++++.+|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD----DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc----cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 46789999999999999999999999 55999999999999999999999999999999999887765543
No 90
>KOG2003|consensus
Probab=98.70 E-value=6.5e-08 Score=91.89 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+.++.++||..|..|+|++|.+.|.+|+.-+.. ...+++|+|+.+..+|+.++|++++-+.-.+--+++.+++.+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4567789999999999999999999999987665 668999999999999999999999988666666789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
|.+|..+.+...|++++-++..+-|+++.++.-++.+..
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999988877766544
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.69 E-value=8.4e-07 Score=75.94 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=79.4
Q ss_pred HHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 63 ~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
.+...+..++.+ ..+.++.++|.++...|++++|+..+++|+++.|+. ..+++.+|.++..+|++++|+.+++++
T Consensus 21 ~~~~~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 21 LILKILPINKKA--KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HHHHHcccccHh--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444432 377889999999999999999999999999987763 478999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q psy5660 140 LKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 140 l~l~P~~~~~~~~l~~~~~~ 159 (337)
++++|++......++.+...
T Consensus 99 l~~~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 99 LELNPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHhCcccHHHHHHHHHHHHH
Confidence 99999998887777766544
No 92
>KOG0546|consensus
Probab=98.68 E-value=4.1e-08 Score=90.79 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=113.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc-----------C----CchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-----------A----DNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-----------~----~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
.....+.++..++.||..|+.++|+.|..-|.+++..-. + -..+...++.|.++|-++++++..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 467778889999999999999999999999999986421 1 1234567888999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy5660 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILR 165 (337)
Q Consensus 99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~ 165 (337)
+..+..++..++...+|+||++.++..+.++++|++++..+....|++..+...+..+..+.....+
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877776655444333
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.1e-06 Score=84.56 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
....+-.+-..+..|+++.|...++..|...|+ +..++.-++.++++.++..+|++-+++|+.++|...-..+.+|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~----N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD----NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334444555555556666666666665555555 3355555555555566666666666666666665555555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+++++.|++.+|+..++..+.-+|+++..+..++++...
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 666666666666666666665566665555555555443
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.67 E-value=9.1e-07 Score=78.98 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=98.8
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLF 124 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~ 124 (337)
....+.+...|+-+.+....+++....|.+.. +..-.|..+++.|||..|+..+++|..++|+++++|.-+|.+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH
Confidence 56777888889988888888888888888653 33338889999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++|++++|...|.+++++.|+++.+...+....-.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 99999999999999999999999998888876655
No 95
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.66 E-value=3.7e-07 Score=75.89 Aligned_cols=100 Identities=10% Similarity=0.020 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
-........|..++..|+|++|+..|.+++...+ ++.+...+..++|.+++.+|+|++|+..++. +.-.+-...++..
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~ 123 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAEL 123 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHH
Confidence 4466677889999999999999999999998764 4566778888899999999999999998866 3333444567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al 140 (337)
+|.++...|++++|+..|++++
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 8999999999999999998874
No 96
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.65 E-value=8.3e-08 Score=68.74 Aligned_cols=67 Identities=22% Similarity=0.143 Sum_probs=60.1
Q ss_pred HHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 51 NFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
+++.|+|++|+..|++++...|+ +..++.++|.|+++.|++++|...+.+++..+|++..++.-+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD----NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT----SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 46889999999999999999999 56888999999999999999999999999999998777766664
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.63 E-value=1.5e-07 Score=90.53 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~ 109 (337)
..+..+.++|+.+++.|+|++|+.+|++||+++|++.+ ...+|+|+|.||..+|++++|+.++++|+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999998431 11569999999999999999999999999983
No 98
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.63 E-value=1e-06 Score=70.93 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKLR 118 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~r 118 (337)
....+.|..+-..|+.++|+.+|.++++...... ....++.++|.++..+|++++|+..+++++.-.|+ +......
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4567889999999999999999999999765433 36689999999999999999999999999999888 7788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+|.++..+|+.++|+.++-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987774
No 99
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.62 E-value=5.6e-07 Score=82.98 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+......+...++++++...+.++....... ..+.+|..+|.++.+.|+.++|+.++++|++++|++..+...++.
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~ 188 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAW 188 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344455566778889999998888877544211 156888889999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK---EILRNERKQAQQVKKEEKEKERVLQIIRERK 192 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~---~~~~~~~k~~~~~~~~~~~~~~l~~al~~rg 192 (337)
++...|+++++...++...+..|+++.+...++.+..... ++-.-.++.....+........+..++...|
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998888888888777777776655422 2222223332223333344444555554444
No 100
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=7.7e-07 Score=80.22 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVK 116 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~ 116 (337)
.+....+.+-.+++.|+|..|...|..-|..-|+.. ..+.+++++|.+++.+|+|.+|...+..+++-.|++. .++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 445588999999999999999999999999999754 4678999999999999999999999999999988765 679
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
+-+|.|...+|+-++|...++.+++--|+...+....
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999999999988775543
No 101
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.61 E-value=1.1e-06 Score=92.13 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+....+++-..+++|+|..|+..|.++++.+|..+ +.++ -.+.++...|++.+|+..|++++.-+|.+..++..
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~---~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS---GQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch---hhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 4666777888888888888888888888888888742 1122 34444445555555555555555222222233333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
.|.++...|++++|++.|+++++.+|+|+.+...
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~g 141 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISG 141 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3445555555555555555555555555544443
No 102
>KOG4162|consensus
Probab=98.61 E-value=3.9e-07 Score=91.48 Aligned_cols=106 Identities=13% Similarity=0.011 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH--HHHHHHhhCCCCHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT--DCQIALKLKPDYPKVK 116 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~--d~~~Al~l~P~~~ka~ 116 (337)
..+..|...|..+..+|+..+|.+.|..|+.++|++. ....-+|.|+++.|+-+-|.. ....|+++||.|.+||
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv----~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV----PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 5678889999999999999999999999999999955 666779999999998888877 9999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
|.+|.++..+|+.++|.++|+.++++++.++.
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999988763
No 103
>KOG2002|consensus
Probab=98.60 E-value=8.8e-07 Score=90.90 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-PKVKLRAA 120 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-~ka~~r~a 120 (337)
..+.-.+|.+|-.|+|..+...+..|+...- ...+.+..++++|.+|..+|+|++|..+|.+|++.+|++ +-+++.+|
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 3444566777777778888777777777542 233567779999999999999999999999999999998 89999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
+.++..|+++.|+.++++.++..|++.+...+++.+....
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 9999999999999999999999999999999888876554
No 104
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.59 E-value=5.1e-07 Score=86.89 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 70 IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV---KLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 70 ~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka---~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+|+ .+..|+|+|.+++++|+|++|+..|++||+++|++..+ ||++|.||..+|++++|+.++++++++
T Consensus 70 ~dP~----~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVK----TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3565 67999999999999999999999999999999999965 999999999999999999999999997
No 105
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=7.4e-07 Score=77.59 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=109.9
Q ss_pred hHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660 21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100 (337)
Q Consensus 21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~ 100 (337)
.+.-+..+..- ..-++++.|.-+.++|+.|=..|-+.-|.-.+++++.+.|. .+.+++-+|.-+..-|+|+.|.+
T Consensus 46 ~iarlsqlL~~-~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 46 ILARMSQILAS-RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHHHHh-ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHH
Confidence 34444444332 24688899999999999999999999999999999999999 67899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.++..+++||.+.-|+.++|.+++--|+|.-|.+.+.+-.+-||+++
T Consensus 121 aFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 121 AFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999999999999986
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=1.8e-06 Score=63.30 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++.++|.++...|++.+|+..++++++..|.+..+++.+|.++...|++++|+.++++++.+.|.+......++.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999998866665555543
No 107
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=1.8e-06 Score=90.66 Aligned_cols=144 Identities=14% Similarity=0.057 Sum_probs=96.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
.....+...|++.+|+.++++++.-.+. ........|.++..+|+|++|+..++++++.+|+++.+++.++.++..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~----~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNI----SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 5555666778899999999998832222 334444457788888999999999999999999998888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q psy5660 126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN---KHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIK 194 (337)
Q Consensus 126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~---~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~ 194 (337)
.++.++|+..++++...+|.+... ..+..+.. ...++....++..............+..++...|+.
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 899999999999998888886655 33333331 111222233333333333344445556666666654
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=4.7e-06 Score=80.22 Aligned_cols=117 Identities=15% Similarity=0.001 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+-..--.|..+++.+++.+|++.+.+++.+.|+ ...+..|+|.++++.|++.+|+...+..+.-+|.++..|..
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~ 413 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDL 413 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHH
Confidence 44455567889999999999999999999999998 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|++|..+|+-.+|...+..++.+..+-..+...+..+.++
T Consensus 414 LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 414 LAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999988777777777776655
No 109
>KOG2076|consensus
Probab=98.55 E-value=3.9e-06 Score=85.63 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..|...|.++-.+|+..+|+.+...|-.++|+|. ..|..+|.-..++|++.+|+-++.+||+++|.+.+.+++
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~----e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY----ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 5678999999999999999999999999999999964 889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
++..+.++|++..|...+.+++.++|
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999
No 110
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=7.1e-06 Score=75.37 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=113.6
Q ss_pred CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc---------------------------
Q psy5660 18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------------------------- 70 (337)
Q Consensus 18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------------------------- 70 (337)
.+-++--.|+|...| +-|-++...++.+.|..|+..|-|+.|...|+..++.
T Consensus 85 vDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~ 163 (389)
T COG2956 85 VDRAIRIHQTLLESP-DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDV 163 (389)
T ss_pred HHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344566677777766 5677788888888888888888888777777776652
Q ss_pred -------ccCC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 71 -------KCAD-NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 71 -------~p~~-~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+.. .-..+..|+-+|..++.-.+.+.|+....+|++.||+++.|-+.+|.+.+..|+|..|++.++.+++.
T Consensus 164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 2222 12467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q psy5660 143 NPTD-STVIDLRTSCINK 159 (337)
Q Consensus 143 ~P~~-~~~~~~l~~~~~~ 159 (337)
||+. .++...+..|...
T Consensus 244 n~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 9886 4556666666554
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.54 E-value=2.5e-07 Score=68.28 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----PD---YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----P~---~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+.+|.|+|.++..+|+|++|+..+++|+++. +. -..++.++|.++..+|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555555555555555555555555431 11 1344555555555555555555555555543
No 112
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=7.9e-07 Score=65.52 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc---cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK---CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~---p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
..+..+.+.|..++..|+|++|+.+|.+++++. +++....+.++.|+|.|+..+|++++|+..+++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999872 2222336899999999999999999999999999976
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.48 E-value=1.7e-06 Score=73.46 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN----------YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~----------~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l 126 (337)
|+.|.+.|......+|.| +..+.|-|.+++.|.+ +++|+.-++.||.++|+...|++.+|.++..+
T Consensus 7 FE~ark~aea~y~~nP~D----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 688999999999999994 5788888888887743 67788889999999999999999999999887
Q ss_pred CC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 127 KK-----------FEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 127 g~-----------~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+. |+.|..+|+++...+|+|...+.-+..+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 64 8889999999999999998887766555
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.46 E-value=5.9e-06 Score=65.11 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLR 153 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l 153 (337)
..+++.|..++..|++.+|+..|.+++..+|++ ..+++.+|.++...|++++|+..|+.++..+|++ ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 567889999999999999999999999999887 5799999999999999999999999999999986 3455555
Q ss_pred HHHHH
Q psy5660 154 TSCIN 158 (337)
Q Consensus 154 ~~~~~ 158 (337)
+.+..
T Consensus 83 ~~~~~ 87 (119)
T TIGR02795 83 GMSLQ 87 (119)
T ss_pred HHHHH
Confidence 55543
No 115
>KOG2002|consensus
Probab=98.45 E-value=1.7e-06 Score=88.78 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=87.8
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--KPDYPKVKLRAAQCLF 124 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~P~~~ka~~r~a~a~~ 124 (337)
.|-++...|++..|+..|++..+.-.+ .+.+|.|+|.|++.+|+|..|+..|+.+++. .-++...+..+|++++
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~----~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSD----FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhh----CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 344444556666666666665554332 4478999999999999999999999999875 3457789999999999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..|++.+|..+..+|+.+.|.|..+...++-+..+
T Consensus 728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 728 EAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 99999999999999999999999888777766554
No 116
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.42 E-value=2.7e-06 Score=85.08 Aligned_cols=113 Identities=8% Similarity=0.027 Sum_probs=88.8
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHh--------CcHHHHHHHHHHHHcc--ccCCchHHHHHHHHHHHHHHHccCH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKC--------NKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNY 95 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~--------g~y~~Ai~~Y~~ai~~--~p~~~~~~~~~~~nra~~~~~lg~~ 95 (337)
+++..|| ..|..+-..+..+... .+...|.....+++.+ .+. .+.+|.-+|..+...|++
T Consensus 367 ~Ai~ldP------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~----~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 367 EILKSEP------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV----LPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHhCC------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC----ChHHHHHHHHHHHhcCCH
Confidence 5677787 4455555545544332 2345666667776665 444 346777788998899999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
++|...+++|+.++| +..+|..+|+++...|++++|+..|++++.++|.++..
T Consensus 437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 437 DEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999 58899999999999999999999999999999998753
No 117
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=1.5e-05 Score=75.64 Aligned_cols=106 Identities=15% Similarity=-0.007 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH---------------------------------HHHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------------------------------NAQLYNNRAAS 88 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~---------------------------------~~~~~~nra~~ 88 (337)
+...-+|..++..|+++.|+..+.++++..|++... ....+.++|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 345567888999999999999999999888765421 12344567778
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+...|++++|+..++++++++|++..++..+|.++...|++++|+.++++++...|.+.
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 88999999999999999999999999999999999999999999999999999887543
No 118
>KOG0543|consensus
Probab=98.37 E-value=2.9e-06 Score=80.10 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
.+.+.+..+.|.++|..|+.+.+++|.++|+ +.-+++.||.|++.+|+|+.|+.++++|++++|.|-.+...+..|
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~----N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN----NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC----chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4568889999999999999999999999999 678999999999999999999999999999999997777777777
Q ss_pred HHhcCCHHHH-HHHHHHHHhh
Q psy5660 123 LFHLKKFEDC-THLCDELLKE 142 (337)
Q Consensus 123 ~~~lg~~~eA-~~~~~~al~l 142 (337)
.....++.+. .+.|.+.+..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 7777666555 5666666654
No 119
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=5.1e-06 Score=78.80 Aligned_cols=102 Identities=9% Similarity=-0.073 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----H
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP----K 114 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~----k 114 (337)
.....+...|..+...|++++|+..++++++..|++ ..++.++|.++..+|++++|+..+++++...|... .
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 445566678899999999999999999999999984 57889999999999999999999999999987432 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
.++.+|.++...|++++|+..+++++...|
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 566899999999999999999999987766
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.33 E-value=1.4e-05 Score=83.79 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP----- 113 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~----- 113 (337)
....++-...+.+...+++++|++....+++..|+ ...+|+-.|..+++.+++..+... .++..-+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~----~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK----SISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----ceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 67888889999999999999999999999999998 558888889999998888877665 6666655555
Q ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 114 --------------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 114 --------------ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|++.+|.||-.+|+.++|...|+++|+++|+|..+.+.++-....
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998887765544
No 121
>KOG1129|consensus
Probab=98.28 E-value=2.1e-06 Score=78.97 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=83.0
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCHH
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PD-YPKVKLRAAQCLFHLKKFE 130 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~-~~ka~~r~a~a~~~lg~~~ 130 (337)
.++.+-|+.+|++.+++.-. ++.+++|+|.|.+--++|+-++..+.+|+..- |. -...||++|.+....|++.
T Consensus 337 ~~~PE~AlryYRRiLqmG~~----speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQ----SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred CCChHHHHHHHHHHHHhcCC----ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchH
Confidence 33444444444444444433 56899999999999999999999999999874 33 4589999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 131 DCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
-|.++++-+|..||+|.++...++.+..+
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence 99999999999999999999998877554
No 122
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=9.4e-05 Score=71.91 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHH-HHHHHHccCHHHHHHHHHHHHhhCCCCHH-
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR-AASNFFLKNYRSCLTDCQIALKLKPDYPK- 114 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nr-a~~~~~lg~~~~Al~d~~~Al~l~P~~~k- 114 (337)
..+.+......|...+..|+|+.|.+...++-...+. +.++.-. |.+..+.|+++.|...+.+|.+.+|++.-
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-----p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~ 154 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-----PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP 154 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-----hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH
Confidence 3456777788899999999999999777776554322 2333444 55558999999999999999999998854
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~ 163 (337)
...+.+..+...|+++.|+..+++.++.+|+|..+...+..+.......
T Consensus 155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence 4456689999999999999999999999999998888877776554333
No 123
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.27 E-value=8.6e-05 Score=72.43 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-KVK 116 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-ka~ 116 (337)
...+.....+|-..+..|+|..|.+...++.+..|+ ....+.-.|.+..++|++..|...+.++.+..|++. .+.
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~ 156 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAE----PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH
Confidence 346677778888888999999999999998888776 335566677888888999999999999988888775 455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
...+..++..|+++.|...+++.++..|+|+.+...+..+....
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~ 200 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS 200 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55688889999999999999999999999988877777766543
No 124
>KOG1840|consensus
Probab=98.27 E-value=3.4e-05 Score=76.45 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------ 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------ 108 (337)
.....+...|-.|+.+|+|+.|+..+.+|++.-+. +-...+....+.|..|+.+++|.+|+..|++|+.+
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 45556666999999999999999999999998321 11235667778999999999999999999999986
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 --KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 --~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+|.-.-++.++|.+|...|+|++|..+|+++++|
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 3555678899999999999999999999999988
No 125
>KOG1128|consensus
Probab=98.25 E-value=6.4e-06 Score=82.54 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
+....|+-.+.+++|.+|.++++.+++++|- ....|+++|.|.+++++++.|..++.+++.++|++..+|.+++.+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~npl----q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPL----QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCcc----chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 3344455556678999999999999999987 668899999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 123 LFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
|+.+|+-.+|...++++++.+-+|..+
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence 999999999999999999987655444
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=98.25 E-value=2.7e-05 Score=75.29 Aligned_cols=113 Identities=9% Similarity=-0.076 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhC---cHHHHHHHHHHHH---ccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHh
Q psy5660 43 TYKDEGNFNFKCN---KYRNAIINYTEGL---KIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALK 107 (337)
Q Consensus 43 ~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai---~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~ 107 (337)
.+.-+|...+.++ ..+.|+.++++|+ +++|. .+.+|.-+|.||+.+ .+-.+|+..+++|++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~----~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL----KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc----cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 4455666665554 3578999999999 88887 789999999999865 246678899999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++|.++.|+..+|.++...++++.|+.++++++.++|+...+....+.+.-.
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888776554
No 127
>KOG1173|consensus
Probab=98.25 E-value=2.5e-05 Score=76.46 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=107.4
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-------PDYPKVKL 117 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-------P~~~ka~~ 117 (337)
.-.|..+.+.++++-|-.+|.+|+.+.|.|| .++.-+|.+.+..+.|.+|+..++.++..- +.+...+.
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP----LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc----hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 3678888889999999999999999999976 777779999999999999999999998432 12445578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH---KEILRNERKQAQQVKKEEKEKERVLQIIRE 190 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~---~~~~~~~~k~~~~~~~~~~~~~~l~~al~~ 190 (337)
++|.++..++++++|+.+++++|.+.|.+.......+-+.... ..+...+-|.....+...-..+-|..++..
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998888777776552 223333334433333333444444555544
No 128
>KOG1840|consensus
Probab=98.24 E-value=4.1e-05 Score=75.88 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----- 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----- 109 (337)
..+...+..|+.+...++|.+|+..|.+|+.+-- .+.+-.+..+.|+|.+|.+.|+|++|...|++|+++-
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~ 318 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG 318 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc
Confidence 5566777899999999999999999999998632 2233378999999999999999999999999999873
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 110 ---PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 110 ---P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
|.-...+...|..+..++++++|+..+++++++
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 222356667899999999999999999999987
No 129
>KOG1127|consensus
Probab=98.21 E-value=2.4e-05 Score=80.76 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=108.5
Q ss_pred hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------------
Q psy5660 20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------------ 75 (337)
Q Consensus 20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------------ 75 (337)
..-..+++++.|+ ..|-.|-..|..|...-+...|..||.+|.++++++.
T Consensus 477 al~ali~alrld~------~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 477 ALHALIRALRLDV------SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHhccc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3445678899988 8999999999999877788999999999999988642
Q ss_pred --------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 76 --------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 76 --------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
......|..||..|++-+|...|+.+++.|++.+|++..+|..+|.+|...|+|.-|++.+.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 122334556888899999999999999999999999999999999999999999999999999999999986
Q ss_pred HHH
Q psy5660 148 TVI 150 (337)
Q Consensus 148 ~~~ 150 (337)
-.+
T Consensus 631 y~~ 633 (1238)
T KOG1127|consen 631 YGR 633 (1238)
T ss_pred HHH
Confidence 443
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=0.00018 Score=59.65 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka 115 (337)
+.+..........+..+++..+...+.+.+...|+.+ ....+...+|.+++..|++++|+..++.++...|+. ..+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4566667777777889999999999999999888743 346677789999999999999999999999987654 368
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|+|.+++..|++++|+..++.. .-.+-...+..+++.+...
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHH
Confidence 899999999999999999999662 2223335556667766654
No 131
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.19 E-value=7.2e-05 Score=74.94 Aligned_cols=116 Identities=11% Similarity=-0.027 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--------NYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--------~~~~Al~d~~~Al~ 107 (337)
-.|-.+.-+|..++..+. +..|+.++++|++++|+ ++.+|.-+|.|+.... +...+.....+++.
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~----~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD----FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 356777888988887655 88999999999999999 6788888888876542 34556666677666
Q ss_pred h--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 108 L--KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 108 l--~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+ +|..+.+|..+|..+...|++++|...+++++.++| +..+..+++++...
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~ 465 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL 465 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 4 788889999999999999999999999999999999 46788888877665
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=6.1e-05 Score=75.22 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
+++.+|..|-.+|++.+|+..+++||...|+.+..|+..|+++-..|++.+|..+.+.|..+|+.+.-+..--.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 446678888889999999999999999999999999999999999999999999999999998887665544333
No 133
>KOG3060|consensus
Probab=98.18 E-value=0.00022 Score=63.77 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
.+-.|..+-..|+|++|+++|+..++-+|.| ...|-..-++...+|.--+||.....-++.-+.+..||..++..|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~----~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY 164 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTD----TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY 164 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455777777899999999999999999884 344444444444566666677666666666666677777777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
...|+|+.|.-+++.++-+.|-|+.....++.+
T Consensus 165 ~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 165 LSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred HhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 777777777777777777777666554444443
No 134
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.17 E-value=3.3e-06 Score=51.86 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~ 111 (337)
.+|+++|.+++.+|++++|+.+|++||+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666777777777777777777777777665
No 135
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=2.5e-05 Score=72.31 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=91.0
Q ss_pred CCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q psy5660 34 ENTPEELATTYKDEGNFNFKC-NKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP 110 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P 110 (337)
.+.+...|..+.+.|..+... |++++|+++|.+|++.-. +.+.....++.+.|.++.++|+|.+|+..++++....-
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 478889999999999999999 999999999999999743 23344678889999999999999999999999887532
Q ss_pred C------CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 111 D------YPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 111 ~------~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
. +++ .+++.+.|++..|++-.|...+++...++|..
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 1 233 45688999999999999999999999999865
No 136
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.00012 Score=67.54 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=100.3
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP- 113 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~- 113 (337)
....++|.-|=+.+..+....+.+.|+....+|++.+|+ ...+-.-+|.+.+..|+|..|+..++++++-||.+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc----ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 455688999999999999999999999999999999998 445556689999999999999999999999999986
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
.+.-.+..||..+|+.++.+.++.++.+..++......+.
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~ 289 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLA 289 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHH
Confidence 6677889999999999999999999999887765444433
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=2.2e-05 Score=75.70 Aligned_cols=89 Identities=24% Similarity=0.231 Sum_probs=65.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l 126 (337)
.+..++..++..+|++...++|...|.+ +.++.--|..++..++|+.|+..+++|+.+.|...++|+.+|.||..+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 4566666677777777777777777763 466666777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHH
Q psy5660 127 KKFEDCTHLCDEL 139 (337)
Q Consensus 127 g~~~eA~~~~~~a 139 (337)
|++++|+..++.+
T Consensus 282 ~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 282 GDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHhcC
Confidence 7777777666533
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=98.13 E-value=6.1e-05 Score=72.88 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy5660 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHL 135 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~ 135 (337)
.-..|++.-.+|++++|.| +.++..+|.+....++++.|+..+++|+.++|+...+++..|..+...|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld~~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDITTVD----GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4578899999999999994 588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHH
Q psy5660 136 CDELLKENPTDSTVIDL 152 (337)
Q Consensus 136 ~~~al~l~P~~~~~~~~ 152 (337)
.+++++++|.-..+.-+
T Consensus 395 i~~alrLsP~~~~~~~~ 411 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVI 411 (458)
T ss_pred HHHHhccCchhhHHHHH
Confidence 99999999986555433
No 139
>KOG3060|consensus
Probab=98.12 E-value=0.00043 Score=61.87 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=100.1
Q ss_pred ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
..++++..+|..| + | ...-.+|.+--..-.+|+-..||+....-++.=+.|. .+|.-+|..|+..|+|.+|
T Consensus 103 ~~A~e~y~~lL~d--d--p-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~----EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 103 KEAIEYYESLLED--D--P-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ----EAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hhHHHHHHHHhcc--C--c-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH----HHHHHHHHHHHhHhHHHHH
Confidence 3567777776553 1 1 2233344444445566888899999999999988854 8999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLK---KFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg---~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
.-++++.+-++|.++-.+.|+|..++-+| ++.-|.++|.++++++|.+-..+..+
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 99999999999999999999999998876 77889999999999999665444333
No 140
>KOG1156|consensus
Probab=98.11 E-value=9.9e-05 Score=73.35 Aligned_cols=112 Identities=8% Similarity=-0.023 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
.+..+.-.+|..|+|+..+....+.+...|. ...-..-.|.....+|+-++|...++.++..|+...-+|...|..
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~e----HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPE----HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc----cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 4456677788889999999999999998887 445566678888889999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+..-++|++|++||+.||.++|+|.++..-++-++.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~ 120 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI 120 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999887665554443
No 141
>KOG4648|consensus
Probab=98.10 E-value=9.6e-06 Score=75.09 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=74.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK--- 159 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~--- 159 (337)
--+|.-|+++|.|++||++|.+++.++|.|+-.+.++|.+|+.+++|..|...|..++.+|-....+...+..+...
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999999986655555544444332
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5660 160 HKEILRNERKQAQQVKK 176 (337)
Q Consensus 160 ~~~~~~~~~k~~~~~~~ 176 (337)
..++..++...++++..
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 34445555555554443
No 142
>KOG1128|consensus
Probab=98.10 E-value=4.9e-05 Score=76.35 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=72.3
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERK 169 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~~k 169 (337)
+..++|.+|..+++.+++++|-....||++|.|..+++++..|.++|.+++.++|+|.++.+.+..+.-+..+..+++++
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 34589999999999999999999999999999999999999999999999999999999999999887775555555544
Q ss_pred H
Q psy5660 170 Q 170 (337)
Q Consensus 170 ~ 170 (337)
-
T Consensus 576 l 576 (777)
T KOG1128|consen 576 L 576 (777)
T ss_pred H
Confidence 3
No 143
>KOG2003|consensus
Probab=98.09 E-value=0.00026 Score=67.90 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH---H---------------------------HHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ---L---------------------------YNNRAAS 88 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~---~---------------------------~~nra~~ 88 (337)
..++.+.+.+|.|--..+..+|++.|.++..+-|+|+.+.+. + --++|.-
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 467788888999988899999999999999999987632211 1 1134455
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
|+...=+++||.++++|--+.|+..|..+..|.|+...|+|..|...|+...+-.|.+-..+..+.++..
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 5555567899999999999999999999999999999999999999999999999999888877776654
No 144
>KOG4151|consensus
Probab=98.09 E-value=1.3e-05 Score=81.10 Aligned_cols=122 Identities=24% Similarity=0.326 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--LKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
....+...++.||..|..++|..|.-.|..++.+.|.+....+.+.+|++.|++. +|+|..++.+|.-|+...|...+
T Consensus 49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~ 128 (748)
T KOG4151|consen 49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISK 128 (748)
T ss_pred HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHH
Confidence 4467888999999999999999999999999999998777789999999999986 57999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++++++.+|..+++++-|++...-....+|.+..+.....+.+.
T Consensus 129 ~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 129 ALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 99999999999999999999988888999999766665544443
No 145
>KOG1174|consensus
Probab=98.08 E-value=0.00019 Score=68.08 Aligned_cols=146 Identities=13% Similarity=0.106 Sum_probs=100.6
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH---
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT--- 100 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~--- 100 (337)
+-++|..|| .....+.-+|+.+...|+..+|+-.|+.|+.+.|. .-.+|-.+-.||+..|.+++|..
T Consensus 323 ~eK~I~~~~------r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~----rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 323 VEKCIDSEP------RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY----RLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHhccCc------ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 345666665 66788899999999999999999999999999987 44566666667776666665544
Q ss_pred ---------------------------------HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 101 ---------------------------------DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 101 ---------------------------------d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.++++|+++|.+.+|-..+|..+..-|++.+++..+++.|...|+.
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence 4455556677778888888888888888888888888888877654
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy5660 148 TVIDLRTSCINK---HKEILRNERKQAQQVKKEEKE 180 (337)
Q Consensus 148 ~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~~~~~ 180 (337)
.+...++.+... .++.-..+.++.+..++.+..
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 344555554433 222333444554444444333
No 146
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.08 E-value=0.00016 Score=70.51 Aligned_cols=117 Identities=13% Similarity=0.071 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP--KVKL 117 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~--ka~~ 117 (337)
....+...|..+...|++++|+..+.++++..|++.... ...-+....+..++...++..++++++..|+++ ..+.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 566777889999999999999999999999999864211 112234444556889999999999999999999 7788
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCD--ELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~--~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|.+++..|++++|.++++ .+++.+|++.... .++.+...
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~ 382 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQ 382 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHH
Confidence 99999999999999999999 5888888876644 66666544
No 147
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.06 E-value=0.00024 Score=69.01 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=95.7
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC 102 (337)
Q Consensus 23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~ 102 (337)
.|.+.+..+| ...+.-...+...+....+.|+++.|..+|.++.+..|+.. .......+..++..|+++.|+..+
T Consensus 102 ~A~k~l~~~~--~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 102 QVEKLMTRNA--DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ---LPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred HHHHHHHHHH--hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4455555543 11112344455667777999999999999999999888732 122233588899999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
+++++.+|+++.++..++.++...|++++|+..+.+..+..+.++.
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999988776544
No 148
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=6.4e-06 Score=50.84 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660 102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~ 133 (337)
|++||+++|+|+.+|+++|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68889999999999999999999999999886
No 149
>KOG4162|consensus
Probab=98.01 E-value=0.0001 Score=74.50 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
+...|..+.+.++-++|..|..+|-...|. .+..|+-+|.++...|++.+|...+..|+.+||+++...-.+|.++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 335556666677788899999999999887 7789999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTH--LCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 124 ~~lg~~~eA~~--~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
...|+-.-|.. ....++++||.|.+++..++.+.++
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99998888888 9999999999999999999998765
No 150
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.00 E-value=0.00038 Score=57.58 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc------------------hHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN------------------DVNAQLYNNRAASNFFLKNYRSCLTDC 102 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~------------------~~~~~~~~nra~~~~~lg~~~~Al~d~ 102 (337)
-+.+...|......++...++..+.+++.+-..+. .....+...++.++...|++..|+..|
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 85 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL 85 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34555667777888899999999999998743210 233455556777888899999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
++++.++|-+-.+|..+-.++...|+..+|++.|+++.+.
T Consensus 86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988643
No 151
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.2e-05 Score=49.31 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
+++|+++|.++..+|++++|+.+|+++++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999999974
No 152
>KOG4234|consensus
Probab=97.98 E-value=6.6e-05 Score=64.87 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=72.5
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
.||..=| ....+.++-.|.++|-..++.++++.||...++||++.|. +..+...||.+|-++..|+.|+.||.+.
T Consensus 120 ~Ale~cp-~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt----y~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 120 EALESCP-STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT----YEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHhCc-cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----hHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3444444 2334678889999999999999999999999999999998 6678888999999999999999999999
Q ss_pred HhhCCCCHH
Q psy5660 106 LKLKPDYPK 114 (337)
Q Consensus 106 l~l~P~~~k 114 (337)
++++|.+-.
T Consensus 195 ~E~dPs~~e 203 (271)
T KOG4234|consen 195 LESDPSRRE 203 (271)
T ss_pred HHhCcchHH
Confidence 999997553
No 153
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.97 E-value=0.00022 Score=56.49 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=82.1
Q ss_pred HHHHHHH--HHHHHHHHhCcHHHHHHHHHHHHccccCCc--------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 39 ELATTYK--DEGNFNFKCNKYRNAIINYTEGLKIKCADN--------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 39 e~A~~~k--~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
+.+.+|. ..|...+..|-|++|...|.+|++..-+-| -..+.++..++.++..||+|++|+....+||..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4566665 456667888999999999999999865433 246789999999999999999999999999874
Q ss_pred -------CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 -------KPD----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 -------~P~----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+.+ ++.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 4577789999999999999999999988654
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=2e-05 Score=58.93 Aligned_cols=67 Identities=27% Similarity=0.475 Sum_probs=58.2
Q ss_pred ccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 92 LKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 92 lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|+|+.|+..++++++.+|. +...++.+|.|++.+|+|++|+.++++ ++.+|.+.....+++++.-.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999996 466788899999999999999999999 88888887887777777654
No 155
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.91 E-value=0.0012 Score=58.17 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~Al~d~~~Al~ 107 (337)
-...+....|..+++.|+|..|+..|.+-+...|+.+. ...+++.+|.|++.+. ...+|+..++..+.
T Consensus 40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 45567788999999999999999999999999998765 4567788999987653 35689999999999
Q ss_pred hCCCCHH-----------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 108 LKPDYPK-----------------VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 108 l~P~~~k-----------------a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.-|+... --+..|+-|...|.|..|+..++.+++.-|+.......+..+
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9998632 125668889999999999999999999999987665544433
No 156
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00038 Score=63.72 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC---CHHHHH
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK---KFEDCT 133 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg---~~~eA~ 133 (337)
.+..+.-.+.-+..+|+| +.-|.-+|.+|+.+|++..|...|.+|+++.|+|+..+.-.|.+++... .-.++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d----~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 138 MEALIARLETHLQQNPGD----AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 566677778888889994 5788889999999999999999999999999999999999999987653 568899
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 134 HLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 134 ~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+++++++||+|..+..+++.....
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 99999999999999999988876543
No 157
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.88 E-value=3.4e-05 Score=47.01 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+++.+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444444444444555555555444444444
No 158
>KOG1129|consensus
Probab=97.88 E-value=8.1e-05 Score=68.71 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++....|.+|..++++++|+..|+.+++++|.|+.+.--.|.-|+--++.+-|+.+|++.|++.-.++++...++-|
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLC 367 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLC 367 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHH
Confidence 44444555555555555555555555555555555555555555555555555555555555554555554444444
No 159
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=3.2e-05 Score=50.53 Aligned_cols=41 Identities=24% Similarity=0.088 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
++..+|.++..+|++++|+..++++++.+|+|..+++.+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45566666666666666666666666666666666666654
No 160
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.88 E-value=3.4e-05 Score=47.00 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
.+|.++|.+++.+|+|++|+..+++|++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567888888888888888888888888888875
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.00072 Score=54.38 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT---DSTVIDLR 153 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~---~~~~~~~l 153 (337)
.+.+++|.++-.+|+.++|+..|++|+...... ..+++.+|.++..+|++++|+..++.++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467889999999999999999999999986543 579999999999999999999999999999888 66666665
Q ss_pred HHHH
Q psy5660 154 TSCI 157 (337)
Q Consensus 154 ~~~~ 157 (337)
..+.
T Consensus 82 Al~L 85 (120)
T PF12688_consen 82 ALAL 85 (120)
T ss_pred HHHH
Confidence 5543
No 162
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.87 E-value=0.0001 Score=68.51 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=81.3
Q ss_pred ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--cc--C
Q psy5660 19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--LK--N 94 (337)
Q Consensus 19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--lg--~ 94 (337)
+..-+||+.+.-. ++. +...-.-..+++.++++.|.+.+...-+.+.+ ....++|.++.. .| +
T Consensus 116 ~~~~~AL~~l~~~---~~l----E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD------~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 116 GDYEEALKLLHKG---GSL----ELLALAVQILLKMNRPDLAEKELKNMQQIDED------SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CHHHHHHCCCTTT---TCH----HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC------HHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHcc---Ccc----cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHhCchh
Confidence 3444666666532 222 23333455777788888888888887776654 444455554433 34 5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+.+|...++......+.++..+..+|.|++.+|+|++|...++.++..+|+++.+...+..+...
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 78888888886666667777777788888888888888888888888888877776666555444
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.85 E-value=0.00015 Score=67.05 Aligned_cols=107 Identities=21% Similarity=0.222 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCC-
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALKLKP- 110 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~l~P- 110 (337)
+.+...+..+.+-|+.+ +..++.+|+.+|++|+.+- .+....-+.++.++|.++... |+++.|+..|++|+.+-.
T Consensus 69 ~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 69 GDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp T-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34455566666555554 4447777888888777763 333344566777777777776 788888888888777621
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 111 -DY----PKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 111 -~~----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+. ..++...|.++..+|+|++|+..|++....
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 11 355567777788888888888888777764
No 164
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.00057 Score=62.60 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 79 AQLYNNRAASN-FFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 79 ~~~~~nra~~~-~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
...+++.|..+ ++.|+|++|+..++..++..|++ ..++|.+|.+++..|++++|+..|+++++..|+++..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 46778888887 56799999999999999999998 4899999999999999999999999999999987543
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.83 E-value=9e-05 Score=77.76 Aligned_cols=101 Identities=9% Similarity=0.001 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc---------------hHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN---------------DVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~---------------~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
+....+.-.|-.++..+++.+|... .++..-+.+. ..+..++..+|.||-++|++++|...++
T Consensus 63 ~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye 140 (906)
T PRK14720 63 KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE 140 (906)
T ss_pred cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4556677788888888888777766 6666554432 0123678889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
++|+++|+|+.++-++|..+... ++++|+.++.+++..
T Consensus 141 r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 141 RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999865
No 166
>KOG0495|consensus
Probab=97.81 E-value=0.00025 Score=70.79 Aligned_cols=104 Identities=19% Similarity=0.150 Sum_probs=85.5
Q ss_pred HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHH
Q psy5660 52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~e 131 (337)
+....|+.|...+.+|-...|+ ..+|..-+....-+++.++|+..|+.+|+.-|...|.|+.+|+++..+++.+.
T Consensus 629 ~en~e~eraR~llakar~~sgT-----eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGT-----ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hccccHHHHHHHHHHHhccCCc-----chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 3444555555555555554443 35666666666678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 132 CTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 132 A~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
|...|..+++.-|....+.-++.++.++.
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999887763
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0014 Score=59.42 Aligned_cols=115 Identities=12% Similarity=0.113 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC------------------HHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN------------------YRSCLT 100 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~------------------~~~Al~ 100 (337)
....+....|..+++.++|..|+..|++.++..|+++. ...+++.+|.|+..++. -..|+.
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~ 145 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR 145 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH
Confidence 44556789999999999999999999999999998876 46778889999866641 357889
Q ss_pred HHHHHHhhCCCCH---HH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 101 DCQIALKLKPDYP---KV--------------KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 101 d~~~Al~l~P~~~---ka--------------~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
.+++.++.-|+.. .| -+..|+-|...|.|..|+.-++.+++--|+.+.....+.
T Consensus 146 ~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~ 216 (243)
T PRK10866 146 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP 216 (243)
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 9999999999763 11 145577788999999999999999999888765544433
No 168
>KOG1156|consensus
Probab=97.79 E-value=0.00039 Score=69.23 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
.+.+--.|-.+...|+-++|..+-..|+..++. ...||.-.|..+..-++|++||.+|+.|+.++|+|...++-++
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~----S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK----SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCcc----cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 334444555555556666666666666665554 3355666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
....++++|+.....-.+.+++.|++.
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 666666666666666666666655553
No 169
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.79 E-value=6.1e-05 Score=49.18 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
.+++.+|.++..+|++++|++.|+++++.+|+|..+...+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578999999999999999999999999999999998877654
No 170
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.79 E-value=0.00016 Score=49.28 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+|.+|.+++.+|+|.+|.++++.+|+++|+|.++..+...+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999998888777654
No 171
>KOG1174|consensus
Probab=97.77 E-value=0.00033 Score=66.51 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+.-.|...|..++|+.|+.+-.++|..+|. +..+|.-.|.+...+|+..+|+-.++.|..+-|.....|-.+-.
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r----~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPR----NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc----cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34445566667777888888888888888877 55677777888888888888888888888888888888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
||++.|++.||....+.+.+.-|++...+.+++
T Consensus 377 sYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 888888888888888888887788777777764
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.76 E-value=0.00016 Score=63.28 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=71.2
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC 102 (337)
Q Consensus 23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~ 102 (337)
+.-|+|+..| ..+..+.-.|--+...|+|+.|.+.|+..++++|. +.-++.|||.+.+--|+|.-|.+|+
T Consensus 87 DftQaLai~P------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~----y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 87 DFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT----YNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhhhhhhcCC------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc----chHHHhccceeeeecCchHhhHHHH
Confidence 4456788887 88899999999999999999999999999999999 5688999999999999999999999
Q ss_pred HHHHhhCCCC
Q psy5660 103 QIALKLKPDY 112 (337)
Q Consensus 103 ~~Al~l~P~~ 112 (337)
.+--+-||++
T Consensus 157 ~~fYQ~D~~D 166 (297)
T COG4785 157 LAFYQDDPND 166 (297)
T ss_pred HHHHhcCCCC
Confidence 8877777664
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.76 E-value=0.0035 Score=56.39 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka 115 (337)
.-+..+.++|...+..|+|.+|+..|.......|..+- ...+...++-++++.++|..|+...++=+.+.|++. -+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 45788999999999999999999999999999987654 467788899999999999999999999999999876 56
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 116 KLRAAQCLFHL--------KKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 116 ~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
+|.+|.++... .--.+|+..++..+.--|+++-+.....+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~ 158 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR 158 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 77788886643 23467888889999999998644443333
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.72 E-value=0.00083 Score=62.49 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=82.0
Q ss_pred HHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 48 GNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 48 Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
+...+..| ++.+|...|++..+..+. ...+++..|.|++.+|+|.+|...+..|+..+|+++.++.+++.|...
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 33445555 699999999997665444 457788899999999999999999999999999999999999999999
Q ss_pred cCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 126 LKKF-EDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 126 lg~~-~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
+|+. +.+.++..++...+|+++-+..+.
T Consensus 248 ~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 248 LGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp TT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred hCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 9999 667778888888899988776554
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.71 E-value=0.0044 Score=53.24 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRA 119 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~ 119 (337)
.+....||.+...|+|.+|..+|.+++.--=.+ .+.....+|.+.+.++++..|....+...+.+|. .+..+...
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 466779999999999999999999999742221 2367778999999999999999999999999985 56788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|.++...|++.+|...++.++..-|+-
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 999999999999999999999998774
No 176
>KOG3785|consensus
Probab=97.68 E-value=0.0017 Score=60.77 Aligned_cols=105 Identities=21% Similarity=0.360 Sum_probs=67.9
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC--------------------------------
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-------------------------------- 94 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-------------------------------- 94 (337)
.|-.+|..|+|++|+..|+-+...+.- .+.++.|+|-|.+-+|.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~----~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDA----PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCC----CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 577889999999999999988874322 23444555555444444
Q ss_pred ----------------------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 95 ----------------------------YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 95 ----------------------------~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|++||+.+.++|.-+|.+...-..+|.||+++.-|+-+.+.++-.|+..|++
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS 218 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS 218 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence 5566666666666666555555566666666666666666666666666666
Q ss_pred HHHHHHHHH
Q psy5660 147 STVIDLRTS 155 (337)
Q Consensus 147 ~~~~~~l~~ 155 (337)
.-+.+++.-
T Consensus 219 tiA~NLkac 227 (557)
T KOG3785|consen 219 TIAKNLKAC 227 (557)
T ss_pred HHHHHHHHH
Confidence 666555443
No 177
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.64 E-value=0.0013 Score=63.67 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=91.0
Q ss_pred HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA 132 (337)
..++|+.|+..+.+..+.+|. +..-+|.+++..++..+|+....++++.+|.+...+.-.|..++..++++.|
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 347899999999999998875 2334788888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 133 THLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 133 ~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
+...+++.++.|++-.....++++.-...
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 99999999999999999999988875533
No 178
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.62 E-value=0.001 Score=66.66 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
..|......+.-.+..+-..|+|++|+.+.++||+..|+ ...+|...|.++-+.|++.+|....+.|..+|+.+--
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 345555677788899999999999999999999999999 6799999999999999999999999999999998766
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.--..++.+++.|+.++|.+.+..-.+-+
T Consensus 264 iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 264 INSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 66667888999999999999988776544
No 179
>KOG1127|consensus
Probab=97.58 E-value=0.00098 Score=69.33 Aligned_cols=112 Identities=12% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
.++..+|-.+.+.+++.+|+..++.|+..+|.| -.+|..+|.+|..-|.|..|+..+++|..++|.+.-+-|..|.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD----~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD----YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV 638 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchh----HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence 455568888899999999999999999999995 4899999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
....+|+|.+|+..+...+.--......+..++.+.
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999998876555445555554443
No 180
>KOG0551|consensus
Probab=97.50 E-value=0.0033 Score=58.39 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.|--|.+++-..+-.|+|+.|+.-.++|+..+|. +.-+|..-|.|++.|..+..|++.|+..+.++-
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~--------- 184 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT----HLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD--------- 184 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH---------
Confidence 3455667888888889999999999999999999 778999899999999999999999999866553
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|..+.+-+-.++|++...+.....+.+.
T Consensus 185 -----------e~K~~~~l~~l~~k~~~~~L~~er~~rK~ 213 (390)
T KOG0551|consen 185 -----------EAKKAIELRNLIHKNDKLKLIEERDVRKK 213 (390)
T ss_pred -----------HHHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 33333333333678888777766666554
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.48 E-value=0.00011 Score=45.29 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=30.6
Q ss_pred HHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660 63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99 (337)
Q Consensus 63 ~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al 99 (337)
+|++||+++|+ ++.+|.|+|.++...|++++|+
T Consensus 1 ~y~kAie~~P~----n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPN----NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCC----CHHHHHHHHHHHHHCcCHHhhc
Confidence 48999999999 6799999999999999999986
No 182
>KOG0545|consensus
Probab=97.48 E-value=0.0021 Score=57.30 Aligned_cols=97 Identities=18% Similarity=0.285 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKL--------KPD----------YPKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------~P~----------~~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
..+....|.-++++|+|.+|...|+.|+.. .|. +...+.+.++|++..|+|-++++.|...|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345666899999999999999999998753 333 34567899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy5660 141 KENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVK 175 (337)
Q Consensus 141 ~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~ 175 (337)
..+|+|..+...++++... ..+++++..+..+...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 9999999888877777654 4455566666554443
No 183
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.47 E-value=0.00075 Score=64.26 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--------Cc------hHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--------DN------DVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--------~~------~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
+.-..-...|..+|++|+|..|+.-|..|+++... .+ .+.+.+-..+..||+++++.+-|+....+
T Consensus 174 kwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 174 KWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 45556667788889999999888888888887432 11 23455566789999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
.|-++|.+..-++|.|.|+..+.+|.+|.+..--+.
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988755443
No 184
>KOG2796|consensus
Probab=97.47 E-value=0.0029 Score=57.11 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=96.5
Q ss_pred HHHhhccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 22 VEGLQQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 22 lealqaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
++++..+. ++| ++...-....|...++.|+-+.|-.+++..-+... +.-.-+..+..|.+.+|+-.+||.+|
T Consensus 197 ~d~~~~vi~~~~-----e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 197 VDAYHSVIKYYP-----EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred HHHHHHHHHhCC-----cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 45555543 343 34455666789999999999999988884332211 11122557788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 99 l~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
...+.+.+..||.++-+..+.|.|++-+|+..+|++....++.+.|...
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999999999999999999999999999864
No 185
>PRK10941 hypothetical protein; Provisional
Probab=97.46 E-value=0.0017 Score=59.56 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=77.2
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 74 ~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
+..+......|+-.++++.+++..|+.++++.+.++|+++.-+.-+|.++.++|.+..|...++..++..|+++.+..+.
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34567788899999999999999999999999999999999888899999999999999999999999999998887766
Q ss_pred HHHHHH
Q psy5660 154 TSCINK 159 (337)
Q Consensus 154 ~~~~~~ 159 (337)
.++...
T Consensus 256 ~ql~~l 261 (269)
T PRK10941 256 AQIHSI 261 (269)
T ss_pred HHHHHH
Confidence 665443
No 186
>KOG4642|consensus
Probab=97.43 E-value=0.00022 Score=63.14 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=64.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
-|.+++.-+.|..|++.|.+||.++|..+..|-++|.|++++++++.+...|+++++++|+.......++.+..
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 35556667889999999999999999999999999999999999999999999999999998766666665543
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.43 E-value=0.0034 Score=52.89 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|. .|--.+..|+|++|...++-...++|.|.+.++.+|-|+..+++|++|+..|..+..++++++...-..+.|...
T Consensus 39 ~iY~-~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYA-HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 4444 788888999999999999999999999999999999999999999999999999999999998777777777655
No 188
>KOG1130|consensus
Probab=97.41 E-value=0.00045 Score=65.63 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH----HHhhCC--CCHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI----ALKLKP--DYPK 114 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~----Al~l~P--~~~k 114 (337)
...+-..|.-+++.|+++..+.++..||+....|-...+.+|+.+|.+|+.+++|.+|+.+-.- |-.+.. ...|
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4455578999999999999999999999999888888999999999999999999999975443 333332 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+--++|..+-.+|.|++|+-+|.+-|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~ 124 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDF 124 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHH
Confidence 8889999999999999999999987754
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.41 E-value=0.00096 Score=54.93 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
.+..+++.|...++.|+|.+|+..++.....-|-. ..|.+.+|.+++..+++++|+..+++-++++|+|+.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 45778889999999999999999999998887754 5899999999999999999999999999999999654
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.36 E-value=0.002 Score=63.99 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH-
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL- 117 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~- 117 (337)
+.+--+...|..+..+|+.+.|++.|++++.....-+.+...++..+|.|++.+.+|++|...+.+.++.+ ++.++.|
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHH
Confidence 56777889999999999999999999999987777777888999999999999999999999999988855 4667665
Q ss_pred -HHHHHHHhcCCH-------HHHHHHHHHHHh
Q psy5660 118 -RAAQCLFHLKKF-------EDCTHLCDELLK 141 (337)
Q Consensus 118 -r~a~a~~~lg~~-------~eA~~~~~~al~ 141 (337)
-.|-|+..+|+. ++|...+.++-.
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 458889999999 555555555443
No 191
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.30 E-value=0.00044 Score=42.07 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
+|+.+|.++..+|++++|+.+++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
No 192
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.30 E-value=0.00046 Score=41.98 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
.+|.++|.++..+|++++|+..+++|++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999964
No 193
>KOG3824|consensus
Probab=97.30 E-value=0.0026 Score=58.50 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+.+-.|.|.-..+.|+.++|...+..|+.++|+++.++.+.|......++.-+|-++|-++|.++|.|.+++.++.+..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 44555566666678899999999999999999999999999999999999999999999999999999998887766544
Q ss_pred HHH
Q psy5660 158 NKH 160 (337)
Q Consensus 158 ~~~ 160 (337)
-..
T Consensus 195 plV 197 (472)
T KOG3824|consen 195 PLV 197 (472)
T ss_pred hHH
Confidence 333
No 194
>KOG4555|consensus
Probab=97.24 E-value=0.0019 Score=52.25 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
+.|..|.+++..+--+|+-++|+...++|+++...........|..||..|..+|+-+.|..|+..|-++.....+
T Consensus 75 ~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 75 ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 6678899999999999999999999999999987666667889999999999999999999999999988876554
No 195
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.22 E-value=0.002 Score=55.00 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHh----------CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHH
Q psy5660 39 ELATTYKDEGNFNFKC----------NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRS 97 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~----------g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~ 97 (337)
..++++.+-|..+... .-+++|+.-|++||.++|+ ...++.|+|.++..++ .|++
T Consensus 23 ~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 23 LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 4567777777666543 2478899999999999999 7789999999998875 3889
Q ss_pred HHHHHHHHHhhCCCCHH
Q psy5660 98 CLTDCQIALKLKPDYPK 114 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~k 114 (337)
|..++++|...+|+|.-
T Consensus 99 A~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 99 ATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHhcCCCcHH
Confidence 99999999999998763
No 196
>KOG1130|consensus
Probab=97.20 E-value=0.0023 Score=60.95 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---- 108 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---- 108 (337)
+.+.....+|-+.||.|+-.|+|++||.+-..-+.+. -.|..-.-.+++|+|.||.-+|++..|+..|++++.+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence 5555666666667777777777777766655554432 2333334466666777766667766666666654332
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 KPDYP--KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 ~P~~~--ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
...-+ ...|.+|..|.-+.+++.||.+.++-|.|
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33456666666666666666666665554
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.18 E-value=0.029 Score=53.24 Aligned_cols=119 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-DYPKVK 116 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~ 116 (337)
-..|....+.|-..+-.|+|.+|....+++-+..+. ...+|.--|.+-.++|++++|-....+|-++.+ ++.-+.
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~----p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ 156 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ----PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE 156 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc----hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH
Confidence 356777888999999999999999999997776655 446666667778899999999999999999944 456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
..++..+...|++..|..-...+++..|.+++...+..++.-..
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~ 200 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRL 200 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999988887776553
No 198
>KOG3785|consensus
Probab=97.15 E-value=0.0092 Score=56.00 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=73.9
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~ 129 (337)
......+|..|+....-....+.. ....+-..+|.|++++|+|++|+..+..+..-+..+.+...++|-|++-+|.|
T Consensus 31 dfls~rDytGAislLefk~~~~~E---EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDRE---EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchh---hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 456678999999999888755432 24577788999999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy5660 130 EDCTHLCDEL 139 (337)
Q Consensus 130 ~eA~~~~~~a 139 (337)
.+|...-.++
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 9999876554
No 199
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.14 E-value=0.0098 Score=53.96 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=66.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHH
Q psy5660 82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV---IDLRTS 155 (337)
Q Consensus 82 ~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~---~~~l~~ 155 (337)
.+|-|.-+++.|+|..|...+..-++.-|+. ..|+|.+|.+++.+|+|++|...|..+.+-.|.++.+ .--++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999976 4899999999999999999999999999998887544 444444
Q ss_pred HHH
Q psy5660 156 CIN 158 (337)
Q Consensus 156 ~~~ 158 (337)
+..
T Consensus 224 ~~~ 226 (262)
T COG1729 224 SLG 226 (262)
T ss_pred HHH
Confidence 443
No 200
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.12 E-value=0.0023 Score=43.59 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+++.+|.+++++|+|..|...|+.+|+++|+|..|.--.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3566799999999999999999999999999998876543
No 201
>KOG0376|consensus
Probab=97.12 E-value=0.00033 Score=67.71 Aligned_cols=95 Identities=16% Similarity=0.297 Sum_probs=84.5
Q ss_pred ChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 19 SPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 19 ~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
..-+-+-++|..+| .-|.-+-+++.++++.++|..|+.-..+||+.+|. ...+|..||.+++.++.+.+|
T Consensus 22 ~avdlysKaI~ldp------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~----~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 22 VAVDLYSKAIELDP------NCAIYFANRALAHLKVESFGGALHDALKAIELDPT----YIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred HHHHHHHHHHhcCC------cceeeechhhhhheeechhhhHHHHHHhhhhcCch----hhheeeeccHHHHhHHHHHHH
Confidence 34556778888888 77888889999999999999999999999999998 779999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 99 LTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 99 l~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
+.+++....+.|+.+++......|-
T Consensus 92 ~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 92 LLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 9999999999999998876665553
No 202
>KOG0495|consensus
Probab=97.11 E-value=0.0062 Score=61.12 Aligned_cols=109 Identities=14% Similarity=0.036 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
.....|...|..+-..++.+.|...|+.++...|+ ...+|.-++..-.+.|+.-+|...++++..-||++.--|+.
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~----~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN----SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC----CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 44567778888888889999999999999999988 55788888888888889999999999999999999988888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
.-+.-+..|..+.|.....++|+-.|++..+..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 888888999999999999999998888865543
No 203
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.028 Score=48.65 Aligned_cols=106 Identities=9% Similarity=0.025 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV- 115 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka- 115 (337)
..--+....+.+-.++..+++++|+.....++.. +.|..+.+.+-.++|.+.+.+|.++.|+......- + .+..+
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~-~~w~~~ 160 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--E-ESWAAI 160 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--c-ccHHHH
Confidence 3344556667888889999999999999999975 55666788889999999999999999988776532 2 22333
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 116 -KLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 116 -~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.-.+|.++...|+-++|...|.+++..+++.
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 4567999999999999999999999987443
No 204
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.09 E-value=0.027 Score=47.11 Aligned_cols=102 Identities=24% Similarity=0.270 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHhhCC---CCHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA-SNFFLKNYRSCLTDCQIALKLKP---DYPKV 115 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~-~~~~lg~~~~Al~d~~~Al~l~P---~~~ka 115 (337)
....+...|......+++..|+..+.+++...+... ......+. ++...|++..|+..+.+++..+| .....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 169 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPD----LAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 334444555555555555555555555555444321 12222222 45555555555555555555444 23344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
++..+..+...++++.|+..+.+++...+.
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 444444455555555555555555555555
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.07 E-value=0.02 Score=47.88 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=84.5
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCC
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKK 128 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~ 128 (337)
.++..|++..|+..|.+++...+. .......+.+++..+...+++..|+..+.+++...+. ...++..++.++...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPE-LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 788999999999999999886652 0115566777777788899999999999999999999 79999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q psy5660 129 FEDCTHLCDELLKENPTD 146 (337)
Q Consensus 129 ~~eA~~~~~~al~l~P~~ 146 (337)
+..|+..+..++...|..
T Consensus 218 ~~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 218 YEEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHHhhCccc
Confidence 999999999999999883
No 206
>KOG4340|consensus
Probab=97.02 E-value=0.002 Score=59.05 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----CC---
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----PD--- 111 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----P~--- 111 (337)
..|....+.|-..|+.|+|+.|++.|+.|++...- ++.+-+|.|.||++.|+|.+|++.....++.. |.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy----qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI 217 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY----QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI 217 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCC----CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence 45667788999999999999999999999999876 44778899999999999999999988887642 21
Q ss_pred -------------C---------HHHHHHHHHHHHhcCCHHHHHHHH
Q psy5660 112 -------------Y---------PKVKLRAAQCLFHLKKFEDCTHLC 136 (337)
Q Consensus 112 -------------~---------~ka~~r~a~a~~~lg~~~eA~~~~ 136 (337)
| +.|+...+-++++.|+++.|.+.+
T Consensus 218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 1 345556677888899998887764
No 207
>KOG4507|consensus
Probab=96.91 E-value=0.0048 Score=61.11 Aligned_cols=101 Identities=13% Similarity=-0.007 Sum_probs=89.4
Q ss_pred HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA 132 (337)
..|+-..|+.|...|+...|... -.-..|+|.+.++-|-.-.|...+.++|.++-..+-.++..|++++.+.+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~---~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQ---DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhh---cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 46888999999999999988632 245678999999999889999999999999988888999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 133 THLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 133 ~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++.++.+++++|++....+-+..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999887766554
No 208
>KOG2376|consensus
Probab=96.89 E-value=0.018 Score=57.22 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---------------------------CchHHHHHHHHHHHHHHHccC
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---------------------------DNDVNAQLYNNRAASNFFLKN 94 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---------------------------~~~~~~~~~~nra~~~~~lg~ 94 (337)
..+.-+|..+++.|+|++|+..|+..++-+.+ .++-.-.+++|+|-++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 34556899999999999999999998654321 222355788999999999999
Q ss_pred HHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 95 YRSCLTDCQIALKLK-------PDY--------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~-------P~~--------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
|.+|+..+.+|+++. -.+ .-....+|.++..+|+-++|.+.|...++.+|.+.
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999995542 122 12345678899999999999999999999887764
No 209
>KOG1941|consensus
Probab=96.83 E-value=0.0076 Score=56.70 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------- 112 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------- 112 (337)
......||.+...+.++++++.++.|+... -+|+.+.-.++..+|..+-++++|++|+-...+|.++-...
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 445568899999999999999999999874 34566677888999999999999999999999998874321
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHH
Q psy5660 113 ---PKVKLRAAQCLFHLKKFEDCTHLCDELLKE--NPTDSTV 149 (337)
Q Consensus 113 ---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--~P~~~~~ 149 (337)
.-++|+++.++..+|++-+|.++|+.+-++ ..+|..+
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 246789999999999999999999999876 3444433
No 210
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.77 E-value=0.0027 Score=37.96 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|++++|.++..+|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777777777777777777777777776653
No 211
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.75 E-value=0.017 Score=45.32 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=77.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----------NYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----------~~~~Al~d~~~Al~l~P~~~ka 115 (337)
++..+|++|++-+|++.....|...+++.. ...++.-.|.++.++. -...|++.+.++..+.|.....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 567889999999999999999998887552 1245555666665553 2567889999999999999888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
+|.+|.-+-....|++|..-++++|.+.
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 8888888888888999999999998873
No 212
>KOG4340|consensus
Probab=96.75 E-value=0.0088 Score=54.94 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH
Q psy5660 51 NFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE 130 (337)
Q Consensus 51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~ 130 (337)
+.+..+|.+||++.+--.+.+|. +-..++-+|.||+...+|..|..++.+.-.+-|...+..+..|+.++..+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~----~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPR----SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 37788999999999999999987 45778889999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHHH
Q psy5660 131 DCTHLCDELL 140 (337)
Q Consensus 131 eA~~~~~~al 140 (337)
+|+.......
T Consensus 96 DALrV~~~~~ 105 (459)
T KOG4340|consen 96 DALRVAFLLL 105 (459)
T ss_pred HHHHHHHHhc
Confidence 9998876544
No 213
>KOG1308|consensus
Probab=96.74 E-value=0.00072 Score=62.88 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=61.2
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 91 FLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 91 ~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.-|.++.||..|..||.++|...-.|-.+|.+++.+++...|++.|..++.++|+...-...++.+.+.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 357899999999999999999999999999999999999999999999999999987666655555554
No 214
>KOG3081|consensus
Probab=96.72 E-value=0.048 Score=49.40 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=65.3
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLF 124 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~ 124 (337)
+++.+..+.+-|.....+..+.+.+ .....+|.++.++ +.+.+|.-.|+.--+--|..+......|.|++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided------~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDED------ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 4445556666666666666665443 3333344444443 34777777777766655556777777778888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.+|+|++|...++.+|.-++++++.+..+-.+
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 88888888888888887777777666555443
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.67 E-value=0.052 Score=53.23 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCHHH
Q psy5660 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE-NPTDSTV 149 (337)
Q Consensus 79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l-~P~~~~~ 149 (337)
..+...+|.|..++|+.++|+..++..++..|. +...++++..|++.++.|.++...+.+.=.+ -|....+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti 332 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI 332 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence 445566788999999999999999999988775 5678889999999999999999888876433 2444433
No 216
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.64 E-value=0.0033 Score=36.16 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~ 111 (337)
+|.++|.++..+|++..|+..++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555543
No 217
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.64 E-value=0.042 Score=58.87 Aligned_cols=104 Identities=8% Similarity=-0.126 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----C-
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD----Y- 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~----~- 112 (337)
-.+......|..++..|++..|...+.+++...+.... ....++.++|.++...|++++|...+.+++..... .
T Consensus 450 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 450 LQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 34555556889999999999999999999986554322 24567788999999999999999999999976332 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 113 -PKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 113 -~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
..++..+|.++...|++++|...+++++.+
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 246678899999999999999999999986
No 218
>KOG2053|consensus
Probab=96.63 E-value=0.047 Score=56.65 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=81.7
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~ 129 (337)
.....+++++|+...++.++..|+ ...+..--|..+.++|.+++|....+..-...+++...+-.+-.||..+|++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPN----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 346678899999999999999998 4455666788999999999999444444444566778888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 130 EDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++|..+|++++..+|+ .+....+=.+
T Consensus 94 d~~~~~Ye~~~~~~P~-eell~~lFma 119 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS-EELLYHLFMA 119 (932)
T ss_pred hHHHHHHHHHHhhCCc-HHHHHHHHHH
Confidence 9999999999999999 5554444333
No 219
>KOG2471|consensus
Probab=96.62 E-value=0.0057 Score=59.46 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHH-HHccccC---CchH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHh-------
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTE-GLKIKCA---DNDV-NAQLYNNRAASNFFLKNYRSCLTDCQIALK------- 107 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~-ai~~~p~---~~~~-~~~~~~nra~~~~~lg~~~~Al~d~~~Al~------- 107 (337)
.+..+.-+.+..|..|+|.+|++.... .|...+. -+++ ..+.|+|+|-+|+++|.|.-++-.+.+||+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 455666788889999999999987643 2333333 1222 567789999999999999999999999996
Q ss_pred --hCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 108 --LKP---------DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 108 --l~P---------~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+.| +.....|+.|..++..|+.-.|.+++.++.+..-.|+.++-.+++|.-.
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 122 3457789999999999999999999999999998999998888877543
No 220
>KOG3081|consensus
Probab=96.62 E-value=0.059 Score=48.84 Aligned_cols=93 Identities=19% Similarity=0.150 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
+++.+|.-.|++.-+..+. ...+....|.|++.+|||.+|....+.||.-+++++.++.++-.+...+|.-.++..
T Consensus 187 ek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 4689999999998774443 457788899999999999999999999999999999999999999999999888776
Q ss_pred HHHH-HHhhCCCCHHHHH
Q psy5660 135 LCDE-LLKENPTDSTVID 151 (337)
Q Consensus 135 ~~~~-al~l~P~~~~~~~ 151 (337)
-+-. ....+|+++-...
T Consensus 263 r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHHHHhcCCcchHHHH
Confidence 5544 4445677764433
No 221
>KOG3364|consensus
Probab=96.61 E-value=0.027 Score=45.86 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLK---NYRSCLTDCQIALK-LKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~-l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
.....+|.|.|..+-. +.++.|..+...++ -.|. .-.+.|.+|..++.+++|+.|+.+++.+|+.+|+|.++..+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4567788888888654 46778888888886 4443 34678899999999999999999999999999999999888
Q ss_pred HHHHHHH
Q psy5660 153 RTSCINK 159 (337)
Q Consensus 153 l~~~~~~ 159 (337)
...++.+
T Consensus 111 k~~ied~ 117 (149)
T KOG3364|consen 111 KETIEDK 117 (149)
T ss_pred HHHHHHH
Confidence 7766543
No 222
>KOG4814|consensus
Probab=96.60 E-value=0.023 Score=56.95 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND--VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
..+.+.+-..|+.++|..|++.|...+.--|.|.. ..+-+..|++.||+.+.+.+.|++.++.|=+.+|.++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 35668889999999999999999999998876542 2477888999999999999999999999999999999888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l 142 (337)
-.+...-|.-++|+.+.......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 89999999999999998888765
No 223
>KOG2376|consensus
Probab=96.58 E-value=0.067 Score=53.30 Aligned_cols=99 Identities=21% Similarity=0.265 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-----------------------------HHHHHHHHHHHHHHHc
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-----------------------------VNAQLYNNRAASNFFL 92 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-----------------------------~~~~~~~nra~~~~~l 92 (337)
.++...-|.+-+.++|++|+..-.+.+...|++.. ......+-+|-|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 45555556666666666666666666666655321 0111123455555556
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 93 g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
+..++|+.+++ .+++...+..-..|+.++.+|+|++|...|+..++.+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66666555555 3444445555555666666666666666666555543
No 224
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.57 E-value=0.004 Score=35.78 Aligned_cols=33 Identities=9% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.+++++|.++..+|++++|+.+++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 225
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.47 E-value=0.024 Score=51.08 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
-+.-+++-|...++-|||.+|+..++.+....|.. .++.+.++.+++..+++++|+...++-+++.|+++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 45778889999999999999999999999988765 4899999999999999999999999999999998644
No 226
>KOG1586|consensus
Probab=96.47 E-value=0.039 Score=49.11 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHH-HccCHHHHHHHHHHHHhhCC----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNF-FLKNYRSCLTDCQIALKLKP---- 110 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~-~lg~~~~Al~d~~~Al~l~P---- 110 (337)
.+.|..|.+.+| +|+..+...|+.+..++|++-.+-... -+..+.-+|..|. .+.++.+||..|++|-+.-.
T Consensus 71 hDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees 149 (288)
T KOG1586|consen 71 HDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEES 149 (288)
T ss_pred hhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh
Confidence 344444444444 234445555555555555554331100 1111112233332 23455555555555544321
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 111 --DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 111 --~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.-.|+++..|.-...+++|..|+..|++.....-+|
T Consensus 150 ~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 150 VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 123455555555555556666666655555544344
No 227
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.45 E-value=0.069 Score=45.94 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--
Q psy5660 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-- 111 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-- 111 (337)
+...++....+.+.|+.+.+.|+++.|+++|.++.+. |..+.-....+.+.-.+.+..+++..+.....+|-.+-..
T Consensus 29 n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 29 NLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 3566788999999999999999999999999998775 4444446677888888889999999999999988766322
Q ss_pred CH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 112 YP--K--VKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 112 ~~--k--a~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+. + .-.-.|.+++..++|.+|...+-.+..
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 22 2 223446777888999999988866654
No 228
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.30 E-value=0.1 Score=46.31 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=70.4
Q ss_pred HhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhhCCC------CHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKN-------YRSCLTDCQIALKLKPD------YPKVK 116 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~-------~~~Al~d~~~Al~l~P~------~~ka~ 116 (337)
....+++|++.|.-|+-. ...++...+.++..+|-++..+|+ +..|+..+.+|+..... ....+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345689999999888754 223344578889999999999988 55666666666665432 25788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
|.+|.....+|++++|.+++.+++..-
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999764
No 229
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.29 E-value=0.053 Score=56.61 Aligned_cols=108 Identities=9% Similarity=-0.129 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
.|...-+.+.+.|+.++|..+|....+...-.+ ....|..+..++.+.|++++|.+.++++ ...| +...|..+..+
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHH
Confidence 355555556666666666666666554221111 1234444555555666666665555442 1222 23445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+...|+++.|...+++++.++|++......+.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 55666666666666666666665543333333
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.28 E-value=0.0082 Score=37.18 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
+.++|.++..+|+|++|+.+|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.26 E-value=0.0082 Score=37.18 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=11.2
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGL 68 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai 68 (337)
.+.|+.+.+.|+|++|+.+|++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555533
No 232
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.24 E-value=0.087 Score=55.01 Aligned_cols=113 Identities=9% Similarity=-0.087 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP--DYPKVKL 117 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P--~~~ka~~ 117 (337)
....|......|.+.|+.++|++.|.+.++.... + +...|..+-.++.+.|.+++|...++...+..+ .+...|.
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-P--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 3456888889999999999999999998875332 1 346677788888899999999999999876422 2456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
-+..++...|++++|.+.+++. ...|+......++..+
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTAC 504 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence 8899999999999999998865 3455544444444444
No 233
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.24 E-value=0.064 Score=57.47 Aligned_cols=100 Identities=8% Similarity=0.018 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-----YP 113 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-----~~ 113 (337)
.+...|..++..|++..|...+.+++..... .......++.++|.++...|++++|...+.+++.+... ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 3334445555555555555555555543211 00112233444555555555555555555555543211 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.++..+|.++...|++++|...+.+++.+
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555555556666665555555443
No 234
>KOG1586|consensus
Probab=96.23 E-value=0.39 Score=42.91 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=73.2
Q ss_pred HHHHHHHHh-CcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHH
Q psy5660 46 DEGNFNFKC-NKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------PKVK 116 (337)
Q Consensus 46 ~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------~ka~ 116 (337)
+.|..|-.. .++++||.+|.+|-+.-..+... ...++...|.---.+++|.+||..+++.....-+| +|-|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 444444333 57899999999998764433221 22344445555567899999999999887654443 3555
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 117 L-RAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 117 ~-r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
+ ..|.|++...+.-.+...+++..+++|....
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4 6688899889999999999999999998643
No 235
>PLN03077 Protein ECB2; Provisional
Probab=96.22 E-value=0.13 Score=55.09 Aligned_cols=150 Identities=10% Similarity=-0.034 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCCCHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---KPDYPKV 115 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---~P~~~ka 115 (337)
...|....+.+.+.|+.++|++.|++.++. .|+ ...|..+-.++.+.|++++|...++...+. .| +...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~ 627 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-----EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKH 627 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHH
Confidence 456778888899999999999999988874 444 244555555677889999999999988743 34 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------HHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK--HKEILRNERKQAQQ----------------VKKE 177 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~--~~~~~~~~~k~~~~----------------~~~~ 177 (337)
|.-+..++.+.|++++|.+.+++. .+.|+-.....++..+... ....+....+.... ...+
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 888899999999999999998875 3566654444455443221 11111111111111 1112
Q ss_pred HHHHHHHHHHHHHccccccc
Q psy5660 178 EKEKERVLQIIRERKIKLAT 197 (337)
Q Consensus 178 ~~~~~~l~~al~~rgi~~~~ 197 (337)
-.+...+++.++++|++-.|
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCC
Confidence 24556678888888887655
No 236
>KOG4507|consensus
Probab=96.11 E-value=0.087 Score=52.56 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHH-hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 41 ATTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 41 A~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
...+...+-.|.+ +|+..+|+.||..|+...+... ..++...+|.+..+.|...+|--.+..|+.--|....-+|.+
T Consensus 212 sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~--kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l 289 (886)
T KOG4507|consen 212 SWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHN--KDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL 289 (886)
T ss_pred hHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCccc--ccchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence 3445566666655 5899999999999999887533 346667799999999999999888888888877777779999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
|.++.+++.+......|..+++.+|.....
T Consensus 290 ~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 999999999999999999999999876433
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.05 E-value=0.013 Score=34.88 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46677888888888888888888887777753
No 238
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.00 E-value=0.077 Score=39.00 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
..+....+.|--+|.+.+.++|+..++++++..++.+ ..-.++.-++.+|...|+|++++...-+=+.+
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999888744 36667777888999999999998877665443
No 239
>KOG1941|consensus
Probab=95.89 E-value=0.052 Score=51.24 Aligned_cols=73 Identities=22% Similarity=0.273 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 73 ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-----PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 73 ~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~-----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+|....-.+|.|++..+.++-++.+++.+|...+.+.... ..++..+|.++..++.++.|++.++.++++..+
T Consensus 77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 77 EDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3445577889999999999999999999999998875433 267788999999999999999999999988544
No 240
>KOG2396|consensus
Probab=95.87 E-value=0.24 Score=48.71 Aligned_cols=97 Identities=18% Similarity=0.112 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q psy5660 58 RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK-FEDCTHLC 136 (337)
Q Consensus 58 ~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~-~~eA~~~~ 136 (337)
..-+..|+.|+..-+.|. .+|++-..-..+.++|.+--..|.+++...|+++..|.-.|.-.+..+. .+.|.+.+
T Consensus 88 ~rIv~lyr~at~rf~~D~----~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf 163 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDV----KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH
Confidence 445677888888777754 7777766655667779999999999999999999999999998888776 99999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHH
Q psy5660 137 DELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 137 ~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.+||+.+|+++.+..-.-+.+-
T Consensus 164 lrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 164 LRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred HHHhhcCCCChHHHHHHHHHHH
Confidence 9999999999988765544443
No 241
>KOG3824|consensus
Probab=95.86 E-value=0.037 Score=51.16 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
...|..-...+....++|+.++|...+..|+.+.|+ +..++...|.....-++.-+|-.+|-+||.++|.|.+|+.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~----~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPT----NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC----CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 344555556777788999999999999999999999 5578888888888889999999999999999999999998
Q ss_pred HHHHH
Q psy5660 118 RAAQC 122 (337)
Q Consensus 118 r~a~a 122 (337)
++++.
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 87654
No 242
>PRK10941 hypothetical protein; Provisional
Probab=95.81 E-value=0.11 Score=47.68 Aligned_cols=78 Identities=14% Similarity=0.033 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
..-+.+.-+.+.+.+++..|+.+....+.+.|+++ .-+--||.++.++|.+..|+.|++.-++..|+.+.+-.-+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDP----YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 44556777888999999999999999999999965 55666999999999999999999999999999987766554
Q ss_pred HH
Q psy5660 121 QC 122 (337)
Q Consensus 121 ~a 122 (337)
++
T Consensus 257 ql 258 (269)
T PRK10941 257 QI 258 (269)
T ss_pred HH
Confidence 44
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.51 Score=43.51 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH---------------------
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC--------------------- 102 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~--------------------- 102 (337)
-..+|......|++.+|...+..++...|. ++.+..-+|.|++..|+.+.|...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~----~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPE----NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcc----cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 345777888999999999999999999998 4566777888888888875554333
Q ss_pred -------------HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 103 -------------QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 103 -------------~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
.+.+..||++..+-+-+|..+...|+.++|.+.+-..++.|-+
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 2223358999999999999999999999999998888877543
No 244
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.64 E-value=0.54 Score=51.42 Aligned_cols=94 Identities=9% Similarity=-0.071 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHcc----ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKI----KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-PDYPKVKLR 118 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~----~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-P~~~ka~~r 118 (337)
|....+.+.+.|++++|.+.|.+.... .|+ ...|..+-.++.+.|++++|+..++...+.+ +.+...|..
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-----~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-----HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 334445555555555555555555432 222 2445555555666666666666666666554 334455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+..+|.+.|++++|+..|+...+.
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666554
No 245
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.64 E-value=0.019 Score=50.96 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
.+-++...|...+.+|+.+-|.+...|+|.|....+.|+++.|.+.|.+.|+++|.+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 356788888899999999999999999999999999999999999999999999887433
No 246
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.56 E-value=0.67 Score=50.73 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--KPDYPKVKLRAA 120 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~P~~~ka~~r~a 120 (337)
.|......+.+.|++++|.+.+.+.++..... ....|..+..+|.+.|++++|+..++..... .| +...|..+.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI 726 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALI 726 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence 34444555666666777776666666543221 3456666777777777777777777766543 33 456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKE--NPTDSTVIDLR 153 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l 153 (337)
.+|...|++++|++.+++.... .|+......++
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777777777777777766543 45544444333
No 247
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=1.2 Score=41.91 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--C-C--
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--K-P-- 110 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~-P-- 110 (337)
.+.+.+..+...+..+.+.|++..|.....++....+......+.+..-.|......|+-.+|+...+..+.. . +
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~ 220 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNID 220 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccc
Confidence 3568889999999999999999999999999998764433324466666788888889999999888877771 1 0
Q ss_pred -----------------------------CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 111 -----------------------------DYPKVKLRAAQCLFHL------KKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 111 -----------------------------~~~ka~~r~a~a~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
...++++.+|.-...+ +..++++..|+.+.+++|+.......++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0136777777777777 88999999999999999998877766666
Q ss_pred HHHH
Q psy5660 156 CINK 159 (337)
Q Consensus 156 ~~~~ 159 (337)
....
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 5544
No 248
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.15 Score=46.53 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 75 NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 75 ~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
..+.+.+..|.=.+++.-+++..|+.+.++.+.++|.++..+.-+|.+|.++|.+.-|+..+...++.-|+.+.+..+..
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 34567778888889999999999999999999999999999999999999999999999999999999999987766655
Q ss_pred HHHH
Q psy5660 155 SCIN 158 (337)
Q Consensus 155 ~~~~ 158 (337)
+..+
T Consensus 257 ~l~~ 260 (269)
T COG2912 257 QLLE 260 (269)
T ss_pred HHHH
Confidence 5543
No 249
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.48 E-value=0.58 Score=43.24 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF-LKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~-lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
.|....+..-+.+..+.|...|.+|.+.... ...+|...|..-++ .++...|...++.+++.-|.+...+.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~----~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC----TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-----THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3455667777777799999999999965443 45778877888666 566666999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
-+..+++.+.|...+++++..-|...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999998876655
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.46 E-value=0.15 Score=41.92 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
....+...+..+...|++..|+..+++++..+|. +..+|..+-.++...|+...|+..|++..
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456667777888899999999999999999998 56889999999999999999999887764
No 251
>PLN03077 Protein ECB2; Provisional
Probab=95.42 E-value=0.16 Score=54.30 Aligned_cols=112 Identities=8% Similarity=-0.060 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
|...-..+.+.|++++|..+|....+..+-.+ +...|..+..++.+.|++++|...+++. .+.|+ ...|-.+-.++
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence 44445668888999999999999885433222 3467888999999999999999988874 45664 56666666677
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..-|+.+.|....+++++++|++.....++..+...
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 888999999999999999999999888888877655
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.28 E-value=0.12 Score=39.28 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q psy5660 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSC 156 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~ 156 (337)
.+..+++++..+|++..+.+.+|.++...|++++|++.+-.+++.+++. ..++..+-.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~ 67 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI 67 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999988765 4454444443
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.15 E-value=0.24 Score=48.76 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=69.3
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH-----HHHccCHHHHHHHHHHHHhhCC-------------
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS-----NFFLKNYRSCLTDCQIALKLKP------------- 110 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~-----~~~lg~~~~Al~d~~~Al~l~P------------- 110 (337)
..+.++.+.+.-++.-.+|++++|+ .+.+|.-+|.= .....-|++|++..+.++..+.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pd----CAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPD----CADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhh----hhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 3457888999999999999999998 66666655541 1122224444444444433321
Q ss_pred ---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHH
Q psy5660 111 ---DY--PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSC 156 (337)
Q Consensus 111 ---~~--~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~ 156 (337)
.+ +-+-+|+|.|+.++|+.+||++.++..++..|.. ..+...+-.+
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 11 2344688999999999999999999999988763 3444444443
No 254
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.99 E-value=0.11 Score=39.60 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=34.5
Q ss_pred HHHhCcHHHHHHHHHHHHccccCCch-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 51 NFKCNKYRNAIINYTEGLKIKCADND-----VNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~-----~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
..+.|+|..|++.+.+..+....... ....+..|+|.++...|++++|+..+++|+++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777777777666665332111 13445556666666666666666666666655
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.94 E-value=0.73 Score=45.85 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=80.0
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCH
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----PKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----~ka~~r~a~a~~~lg~~ 129 (337)
......|.+......+.-|+ .+......|..+...|+.+.|+..+++|+...... .-+++.+|.++..+.+|
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~----s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN----SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH
Confidence 34567788888888888887 56888889999999999999999999998644332 35678999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 130 EDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++|..++.++.+.+.-++.......-+
T Consensus 322 ~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 322 EEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999999999766555555444433
No 256
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.81 E-value=1.7 Score=41.58 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
-..+|.--+...-..|+++.|=.+..++-+..+++ .-..+..|+...+..|+|..|..-..++++..|.++.++.-.
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~---~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD---TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc---hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 34556666677778899999999999999985554 335566688899999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENP-TDSTVIDLRTSC 156 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~ 156 (337)
.++|..+|+|.+......+.-+-.- ++.++..+..++
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 9999999999999998887765432 233444443333
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.76 E-value=0.072 Score=33.31 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
.++.|+|.++..+|++++|+..+++|+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777766666654
No 258
>KOG2610|consensus
Probab=94.72 E-value=0.46 Score=44.68 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=67.1
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC---HHHHHHHHH
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-KPDY---PKVKLRAAQ 121 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-~P~~---~ka~~r~a~ 121 (337)
..+-..+..|++.+|...+.+.++--|.|- .++..--.+|+.+|+...-....++.+-. +|+- .-.+-..|-
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 344556778888888889999998888743 22332334556677777777777777665 4443 333334566
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
++.+.|-|++|.+..+++++++|.+.=+.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHH
Confidence 77777888888888888888877764333
No 259
>KOG3364|consensus
Probab=94.72 E-value=0.23 Score=40.57 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHc-cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 40 LATTYKDEGNFNFKCNK---YRNAIINYTEGLK-IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
..+...+.+..+.+..+ -++-+.+++..+. ..|.. .-.+.+-+|..|+++|+|++++.+++..|+.+|+|..|
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34555667777766654 5778889998886 33432 33555559999999999999999999999999999877
Q ss_pred HH
Q psy5660 116 KL 117 (337)
Q Consensus 116 ~~ 117 (337)
.-
T Consensus 108 ~~ 109 (149)
T KOG3364|consen 108 LE 109 (149)
T ss_pred HH
Confidence 53
No 260
>KOG1915|consensus
Probab=94.58 E-value=0.67 Score=45.47 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=87.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
..|.--..++++..|...|.+||..+.. +..+|..-|.+-++.++...|.+.+++|+.+-|.-.+-||.....-..
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r----~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYR----NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3444445577899999999999999877 779999999999999999999999999999999999999998888899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH
Q psy5660 126 LKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 126 lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+|+...|.+.|.+=++..|+..
T Consensus 154 LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHH
Confidence 9999999999999999999854
No 261
>KOG1585|consensus
Probab=94.49 E-value=3.6 Score=37.23 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-----PDYP 113 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-----P~~~ 113 (337)
|..|-.-++.+-..++|++|-.+..+|++-..++..+ -+-.|-..|.....+..+.++...+++|..+- |+-.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3444444444445688999999999999765554433 23345555666667899999999999998873 3333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLRTSCIN 158 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~ 158 (337)
-.-...|--.++..+.++|++.|++++.+--.+ ..+..+++++.+
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 222333333466779999999999999874333 334444544443
No 262
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.46 E-value=1.4 Score=37.03 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=35.1
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 87 ~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.+-++.++...+...+...--+.|.+...-.--|..++..|+|.+|+..++.+..-.|..+....++.-|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 333344444444444444444455555555555555555555555555555544444444444444444443
No 263
>KOG1915|consensus
Probab=94.34 E-value=1.2 Score=43.89 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=69.9
Q ss_pred HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA 132 (337)
...+.+.+.+.|+.+|++-|...-..+-+|.--|.-..+..|...|...+-.||...|++ |.+-.....-.++++++.+
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 346677788888888888877655566677766666667777777777777777777753 2222223344566777777
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 133 THLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 133 ~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
...|.+-|+.+|.|-.+....+.+...
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHH
Confidence 777777777777776555555555444
No 264
>KOG2796|consensus
Probab=94.13 E-value=0.99 Score=41.15 Aligned_cols=109 Identities=15% Similarity=0.178 Sum_probs=86.6
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH----HhhCC--CCHHHHHHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA----LKLKP--DYPKVKLRAA 120 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A----l~l~P--~~~ka~~r~a 120 (337)
..+.+...|.|.-.+..|.+.|+.+|. ....+.+.++.+.++.|+...|-..++++ =+++. .+.-.+.+++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e---~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPE---QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCc---ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 456667778999999999999997643 25588888999999999999999999844 33433 3456667778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.++...+++.+|...+.+++..||.++.+.+..+-|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 88888899999999999999999998877666655544
No 265
>KOG2471|consensus
Probab=94.12 E-value=0.06 Score=52.60 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHcc---------ccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKI---------KCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~---------~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
..+.+.|-++|+.|.|..++.+|.+|+.- .|.. ..-...+.+|.|..++..|+.-.|..++.+|+.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 34468888999999999999999999961 1110 011457888999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhc
Q psy5660 108 LKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~~l 126 (337)
.--.|+..|.|+|.|+++.
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999998753
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.04 E-value=0.69 Score=43.44 Aligned_cols=106 Identities=18% Similarity=0.079 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC------------------------------CchHHHHHHHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA------------------------------DNDVNAQLYNNRAASN 89 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------------------------~~~~~~~~~~nra~~~ 89 (337)
.+....+.+..+...|+-.+|+......+..... .....+.++.-+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4566777888888889999999988888872111 1234556666666666
Q ss_pred HHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhhCCC
Q psy5660 90 FFL------KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF-----------------EDCTHLCDELLKENPT 145 (337)
Q Consensus 90 ~~l------g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~-----------------~eA~~~~~~al~l~P~ 145 (337)
..+ +..+.++..+..|++++|.+.++++..|..+..+=.. ..|+..|-+++...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 666 7888899999999999999999999999887665222 3367777777777665
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.94 E-value=2.3 Score=39.14 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=84.2
Q ss_pred CChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccc----c------CCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCN-KYRNAIINYTEGLKIK----C------ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~----p------~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
...++.+..+.+-|...++.+ +|+.|+...++|++.- . +..++...++..++.+++..+.++.... |.
T Consensus 29 ~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~ 107 (278)
T PF08631_consen 29 DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-AL 107 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HH
Confidence 556789999999999999999 9999999999999872 2 1224677888889999999888765444 44
Q ss_pred HHHh----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 104 IALK----LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 104 ~Al~----l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
.+++ --|+.+..++-.-.++...++.+++.+.+.+++.--+
T Consensus 108 ~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 108 NALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 4433 3577777776666666668999999999999987543
No 268
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.91 E-value=1.3 Score=38.51 Aligned_cols=93 Identities=20% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHhcC
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-LKPDYPKVKLRAAQCLFHLK 127 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-l~P~~~ka~~r~a~a~~~lg 127 (337)
......=+.+.++.--++.++..|+. .-...+|.+...+|++.+|...|++|+. +-..+...+..+|++.+.++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTv-----qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTV-----QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhH-----HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 33333445666777777778877752 4566789999999999999999999986 34567788889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q psy5660 128 KFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 128 ~~~eA~~~~~~al~l~P~~ 146 (337)
++.+|...+++..+.+|..
T Consensus 139 ~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred cHHHHHHHHHHHhhcCCcc
Confidence 9999999999999988764
No 269
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.85 E-value=0.75 Score=34.85 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCH
Q psy5660 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r~a~a~~~lg~~ 129 (337)
.+..++++++.+|+| ..+.+.+|.+++..|++..|++-+-.+++.++++ ..+.-.+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D----~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDD----LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 356678888888884 4777889999999999999999999999988876 34444444455555443
No 270
>KOG0686|consensus
Probab=93.77 E-value=0.58 Score=44.94 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=82.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---
Q psy5660 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--- 109 (337)
Q Consensus 33 ~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--- 109 (337)
++...+..-..+-+.|..|...|+...|+++|.++-. -|+...-....+.|.=.+-.-+|||........+|...-
T Consensus 142 ~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~Rd-YCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~ 220 (466)
T KOG0686|consen 142 DNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARD-YCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN 220 (466)
T ss_pred cchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhh-hhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence 3456667778889999999999999999999999544 454444355677777778888999999999888887651
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 110 -----PDYPKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 110 -----P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
--..+.....|.+.+.+++|..|.+++-.+-
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1134666778888899999999998875543
No 271
>KOG2610|consensus
Probab=93.73 E-value=0.86 Score=42.90 Aligned_cols=93 Identities=9% Similarity=-0.117 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHcc-ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKI-KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
+---..+|-.|+...-...+.+.|-. +++-| ..+-+..-.|-+....|-|++|...+++|+++||.+..|....|.++
T Consensus 141 kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 141 KFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred hhhhhHHHhccchhhhhhHHHHhccccCCCCc-HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 33344556667777777777777766 55422 23444555788899999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDE 138 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~ 138 (337)
...|++.++.++..+
T Consensus 220 em~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 220 EMNGRHKEGKEFMYK 234 (491)
T ss_pred HhcchhhhHHHHHHh
Confidence 999999888887543
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.69 E-value=3.1 Score=38.33 Aligned_cols=106 Identities=15% Similarity=0.057 Sum_probs=76.4
Q ss_pred HHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhh----CC---C-------
Q psy5660 51 NFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKL----KP---D------- 111 (337)
Q Consensus 51 ~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l----~P---~------- 111 (337)
..++|+++.|..+|.++-... |+.....+..++|.|...+..+ ++..|+...++|.++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999987654 4444568899999999999999 999999999999887 22 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH---HHHHHHhhCCCCHHHHHHHHHH
Q psy5660 112 YPKVKLRAAQCLFHLKKFEDCTH---LCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 112 ~~ka~~r~a~a~~~lg~~~eA~~---~~~~al~l~P~~~~~~~~l~~~ 156 (337)
..+.+..++.+++..+.++...+ ..+.+-.-.|+.+...-+.-++
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 13566778999999887765444 3333333346655555443333
No 273
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.34 E-value=0.45 Score=36.22 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=47.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 87 ASNFFLKNYRSCLTDCQIALKLKPD---------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 87 ~~~~~lg~~~~Al~d~~~Al~l~P~---------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.-.++.|+|..|++.+.+.+..-.. ..-+.+++|.++...|++++|+..++.++++.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456889999999999888776322 23577889999999999999999999999874
No 274
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.16 E-value=0.23 Score=30.86 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.++.++|.++..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999976
No 275
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.13 E-value=0.82 Score=40.54 Aligned_cols=88 Identities=16% Similarity=-0.006 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCc-------HHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNK-------YRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~-------y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
..+...|..+...+..+-..|+ +..|+..|.+|++.... .......+.+-+|..+.++|++++|+..+.++
T Consensus 112 ~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 112 EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444555555555555544444 68888899988876432 22224567777999999999999999999999
Q ss_pred HhhCCCCH-HHHHHHHHH
Q psy5660 106 LKLKPDYP-KVKLRAAQC 122 (337)
Q Consensus 106 l~l~P~~~-ka~~r~a~a 122 (337)
+...-.+. ..+..+|+-
T Consensus 192 i~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 192 IGSKKASKEPKLKDMARD 209 (214)
T ss_pred HcCCCCCCcHHHHHHHHH
Confidence 97654333 355555543
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.13 E-value=2.4 Score=39.07 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHH-hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy5660 42 TTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVKL 117 (337)
Q Consensus 42 ~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~~ 117 (337)
..|...|..-+. .++.+.|...|..|++.-|.+ ..+|..-..-..++++...|...+++++..-|... ..|-
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~----~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~ 111 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD----PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWK 111 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 446667777666 567777999999999999984 46666666677789999999999999998877654 4555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+...--...|+++...+..+++.+.-|++..+.....
T Consensus 112 ~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 112 KFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6667777889999999999999999988766655443
No 277
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.04 E-value=4.7 Score=38.83 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=40.9
Q ss_pred HHHHHHHH---hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCH
Q psy5660 46 DEGNFNFK---CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 46 ~~Gn~~~k---~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~l~P~~~ 113 (337)
..|-.+-+ .|+.++|+..+..++...... .+..|+-+|.+|-.+ ...++|+..|.++.+++|+.
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~---~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~- 259 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENP---DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY- 259 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCC---ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-
Confidence 44444555 677777777777754433221 234444445444322 23667777777777777543
Q ss_pred HHHHHHHHHHHhcC
Q psy5660 114 KVKLRAAQCLFHLK 127 (337)
Q Consensus 114 ka~~r~a~a~~~lg 127 (337)
-.=.+.|.++...|
T Consensus 260 Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 260 YSGINAATLLMLAG 273 (374)
T ss_pred cchHHHHHHHHHcC
Confidence 22234444444444
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.00 E-value=3.7 Score=40.21 Aligned_cols=49 Identities=16% Similarity=0.335 Sum_probs=45.1
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
.+..|+|++|...+.-..++.| .+.+|..+|.|++...+|++|-.++..
T Consensus 472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4468999999999999999999 899999999999999999999998764
No 279
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.95 E-value=2.9 Score=40.23 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=70.0
Q ss_pred HHhCcHHHHHHHHHHHHcccc---CCc-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy5660 52 FKCNKYRNAIINYTEGLKIKC---ADN-DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK 127 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p---~~~-~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg 127 (337)
...|+|+.|++..+...+..- +.. ...+.++.-.|...+ --+..+|.++...++++.|+.+.+-...|.+++..|
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 456778888877776655432 111 124445554444433 245889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q psy5660 128 KFEDCTHLCDELLKENPT 145 (337)
Q Consensus 128 ~~~eA~~~~~~al~l~P~ 145 (337)
+...+-..++.+-+.+|.
T Consensus 278 ~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 278 NLRKGSKILETAWKAEPH 295 (531)
T ss_pred chhhhhhHHHHHHhcCCC
Confidence 999999999999998864
No 280
>KOG2053|consensus
Probab=92.90 E-value=0.9 Score=47.60 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
-.|-.+++.|++++|..+.+..-...++|. ..+.-+-.||..++.+++|...|++|++-+|+ .+-++.+-.||.+
T Consensus 48 LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~----~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLLEALYGLKGTDD----LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHhcCchhHHHHHhhhccCCCCch----HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 456778999999999976665555555533 44455778999999999999999999999999 8888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH
Q psy5660 126 LKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 126 lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.+.|.+--+.--+..+..|+++
T Consensus 123 ~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCccc
Confidence 8888766655555555666653
No 281
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.90 E-value=0.18 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
+|..+|.+.+..+||.+|+.|+.+||++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
No 282
>KOG4814|consensus
Probab=92.63 E-value=1.5 Score=44.44 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPD------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
.++-|-|.-+++..+|..++..|...++.-|. ..|....++.||+.+.+++.|.++++.|-+.+|.+.-.+...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45567899999999999999999999987664 468888899999999999999999999999999987554443
No 283
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=2.4 Score=42.63 Aligned_cols=106 Identities=15% Similarity=0.007 Sum_probs=83.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHhhCCCCHHHHHHH------
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT-DCQIALKLKPDYPKVKLRA------ 119 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~-d~~~Al~l~P~~~ka~~r~------ 119 (337)
+.-.....+....|+.....++..+|. ++.++.|+|.+....|+...++. .+..|....|+|......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPE----NCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcc----cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 444445556777888888899999988 77999999999888877666554 5555999999998777666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
|+.+..+|+..++.....++..+.|.+..+...+-..
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 8888899999999999999999999986665544433
No 284
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.54 E-value=1.8 Score=46.55 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----K---NYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g---~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
..-.++....+.|++|+..|++.-..=|.-.+ --.+.+..|.+.+.. | .+.+|+..+++ |.-.|.-+--|.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 556 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKE-GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYL 556 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCccc-chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHH
Confidence 34456677888999999999998887776332 234555566666543 2 36677776665 334566778889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..|.+|..+|+|+|-+++|.-|++--|+++++-.+...+.-+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999888777766544
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.50 E-value=0.23 Score=44.23 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ 113 (337)
...+.+++..|.+.|.+|+++.|. ...-|+..|....+-|+++.|...+++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~----w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE----WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch----hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 356778999999999999999998 568899999999999999999999999999999753
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.49 E-value=6.1 Score=40.72 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=92.1
Q ss_pred hHHHhhccccCCCCCChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHH
Q psy5660 21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFK-CNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRS 97 (337)
Q Consensus 21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k-~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~ 97 (337)
.+.+|+++.-+. .-+|...|..+...|+.++. ..+++.|..+.++|+.+... -.++.-.+.+-++.++.+.+...
T Consensus 40 ai~CL~~~~~~~-~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 40 AIKCLEAVLKQF-KLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 366777766443 46899999999999999995 57899999999999988643 22334444555677777766666
Q ss_pred HHHHHHHHHhhCCC----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhC--CCCHHH
Q psy5660 98 CLTDCQIALKLKPD----YPKVKLRAAQCLF--HLKKFEDCTHLCDELLKEN--PTDSTV 149 (337)
Q Consensus 98 Al~d~~~Al~l~P~----~~ka~~r~a~a~~--~lg~~~eA~~~~~~al~l~--P~~~~~ 149 (337)
|+..++++|+.--. .+...+|.-++.. ..+++..|++.++.+..+. .+++.+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 99999999987544 4455566654432 3379999999999999875 355444
No 287
>KOG1585|consensus
Probab=92.46 E-value=1 Score=40.60 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=44.7
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHHHH----HHhhC--CCCHHHHHHHHH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDCQI----ALKLK--PDYPKVKLRAAQ 121 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~----Al~l~--P~~~ka~~r~a~ 121 (337)
...+..+.++|++.|++++.+--.+. .....++...+.++.++..|.+|...+.+ +++.+ |.-.|++.....
T Consensus 119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~il 198 (308)
T KOG1585|consen 119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAIL 198 (308)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHH
Confidence 34444555666666666655432211 12334445555555555555555444433 22222 222344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q psy5660 122 CLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l 142 (337)
+++-..+|..|..+++..-++
T Consensus 199 v~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcC
Confidence 455555666666666655554
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.33 E-value=2.1 Score=41.11 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=91.1
Q ss_pred CChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH
Q psy5660 18 MSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97 (337)
Q Consensus 18 ~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~ 97 (337)
.+..-.|++++++.| ..+-.-.--+..+|+.|+..++-.....+.+..|.- .++..|....--+.
T Consensus 246 ~~Ar~~A~~a~KL~p------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP---------~ia~lY~~ar~gdt 310 (531)
T COG3898 246 ASARDDALEANKLAP------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP---------DIALLYVRARSGDT 310 (531)
T ss_pred HHHHHHHHHHhhcCC------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh---------HHHHHHHHhcCCCc
Confidence 334556788888887 555555566778899999999999999999988852 14445555555556
Q ss_pred HHHHHHHHH---hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 98 CLTDCQIAL---KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 98 Al~d~~~Al---~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+++-++++- .+.|+|....+..+.+.+.-|+|..|..-.+.+....|... +.-++..+.
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIe 372 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIE 372 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHH
Confidence 666666554 45799999999999999999999999999999999888744 334444443
No 289
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.28 E-value=1 Score=41.60 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
....++..++..+...|+++.++...++.+.++|.+-++|.++-.+|+..|+...|+..|+++-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 355677778888889999999999999999999999999999999999999999999999988764
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.91 E-value=6.9 Score=32.98 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
+.+....+.+..+...+.++..++...+...--+.|. ...+-.--|..++..|+|.+|+..++.+..-.|..+-+-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~----~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~k 81 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE----FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAK 81 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHH
Confidence 3467788899999999999999999999888888998 456667788999999999999999999988889888777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
-.+|.|+..+|+...=.. .+.+++.. .++....+....
T Consensus 82 ALlA~CL~~~~D~~Wr~~-A~evle~~-~d~~a~~Lv~~L 119 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRY-ADEVLESG-ADPDARALVRAL 119 (160)
T ss_pred HHHHHHHHHcCChHHHHH-HHHHHhcC-CChHHHHHHHHH
Confidence 788999999998776443 33344443 345454444433
No 291
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.67 E-value=0.33 Score=30.50 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+|.++|.+.+..++|++|+..|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46889999999999999999999999976
No 292
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=1.6 Score=39.88 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+.-..+.=+.+...+++..|..+-.+.+.++|.++ .-..-||.+|.++|.+..|+.|....++.-|+...+-.-+
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp----~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir 255 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP----YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh----hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence 344455666777888999999999999999999965 4455699999999999999999999999999988766544
Q ss_pred HH
Q psy5660 120 AQ 121 (337)
Q Consensus 120 a~ 121 (337)
++
T Consensus 256 ~~ 257 (269)
T COG2912 256 AQ 257 (269)
T ss_pred HH
Confidence 43
No 293
>KOG1070|consensus
Probab=91.43 E-value=9.2 Score=42.47 Aligned_cols=86 Identities=13% Similarity=-0.032 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
|.-+.-.+.|.+|.+.+. --..|..++-+|.+-+.++.|.+.++..++--..-.+.|...|..++..++-++|..
T Consensus 1511 G~eesl~kVFeRAcqycd-----~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCD-----AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred CcHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHH
Confidence 333344455555555432 235666677777777888888888888777666667788888888888888888888
Q ss_pred HHHHHHhhCCC
Q psy5660 135 LCDELLKENPT 145 (337)
Q Consensus 135 ~~~~al~l~P~ 145 (337)
.+.+||+.-|.
T Consensus 1586 lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1586 LLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhhcch
Confidence 88888888777
No 294
>KOG0530|consensus
Probab=90.97 E-value=9 Score=35.06 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=83.8
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHH-H
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE-D 131 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~-e 131 (337)
..+-..|+..-+.+|.++|. +-++|.-|-.|.-.++ +..+-++.....++-+|+|...+..+-.+...+|+.. .
T Consensus 56 ~E~S~RAl~LT~d~i~lNpA----nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPA----NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred cccCHHHHHHHHHHHHhCcc----cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 34567899999999999998 5577777777766654 6778888899999999999999988888888888888 8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 132 CTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 132 A~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
-+..++.++..|..|--+...+.-+.+.
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~ 159 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRF 159 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 8899999999988888887777776654
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.69 E-value=5.6 Score=40.13 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT-HL 135 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~-~~ 135 (337)
-.-|+..|..++..++.++++..... ++.....++....+.-....++..||.+..++.++|.+....|..-.+. .+
T Consensus 47 ~~~~~~a~~~~~~~~~~~~~llla~~--lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 47 QALAIYALLLGIAINDVNPELLLAAF--LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred hhHHHHHHHccCccCCCCHHHHHHHH--HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34478888888888888665433322 6777778899988889999999999999999999999998877665555 55
Q ss_pred HHHHHhhCCCCHHHHHHH
Q psy5660 136 CDELLKENPTDSTVIDLR 153 (337)
Q Consensus 136 ~~~al~l~P~~~~~~~~l 153 (337)
+..+....|.|......+
T Consensus 125 ~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred HHHHHhcCcchHHHHhhH
Confidence 556999999998877666
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.44 E-value=8.6 Score=32.04 Aligned_cols=113 Identities=8% Similarity=0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKE 162 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~ 162 (337)
.....+.+..++...+.......--+.|+....-.--|..++..|+|.+|+..++....-.+..+-.+.++..|...+..
T Consensus 14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33444455577777777777777777888888888888888888999999988888887766667777777777665332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q psy5660 163 ILRNERKQAQQVKKEEKEKERVLQIIRERKIKLAT 197 (337)
Q Consensus 163 ~~~~~~k~~~~~~~~~~~~~~l~~al~~rgi~~~~ 197 (337)
..=........+.....+...|.+++. |....|
T Consensus 94 p~Wr~~A~~~le~~~~~~a~~Lv~al~--g~~~~~ 126 (153)
T TIGR02561 94 AEWHVHADEVLARDADADAVALVRALL--GAQQPP 126 (153)
T ss_pred hHHHHHHHHHHHhCCCHhHHHHHHHHh--ccccCC
Confidence 211111112223333445555666666 554333
No 297
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.28 E-value=1 Score=27.84 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhhCCCC
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHL--CDELLKENPTD 146 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~--~~~al~l~P~~ 146 (337)
+.++..|-.+...|++++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3455666666677777777777 33565555543
No 298
>KOG1070|consensus
Probab=90.06 E-value=11 Score=41.80 Aligned_cols=107 Identities=17% Similarity=-0.000 Sum_probs=86.7
Q ss_pred HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q psy5660 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFH 125 (337)
Q Consensus 48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~ 125 (337)
...|-+.+++++|.+.|+..++.--+ ....|...|...++..+-..|.....+||+.-|+ +....---|+.-++
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q----~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQ----TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcc----hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 34455566788888888887775443 4578888899998988889999999999999998 77887788999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 126 LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 126 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.|+-+.+...++-.|.-.|.-..++..+.....
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 999999999999999999987777666555433
No 299
>KOG1550|consensus
Probab=90.01 E-value=7.2 Score=39.72 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=78.5
Q ss_pred HHHHHHHHh----C-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 46 DEGNFNFKC----N-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 46 ~~Gn~~~k~----g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
..|..|++. . ++..|+.+|.+|-+.... .+..++|.|+..-. |++.|...+..|.+. .+..|++
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 467777763 3 789999999999998765 66777888888654 788999999998754 5799999
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 118 RAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 118 r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
++|.|+.. ..+...|..+++++-+.+ +..+...+...
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~ 405 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF 405 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence 99999865 248999999999999886 44444444433
No 300
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.83 E-value=1.3 Score=34.96 Aligned_cols=83 Identities=13% Similarity=0.143 Sum_probs=58.4
Q ss_pred hHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660 21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNK-----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89 (337)
Q Consensus 21 ~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~-----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~ 89 (337)
+|+-++.+... .+.-......+..+|..+++... ...|+++|+++..+.|. .+..++++|.-.
T Consensus 15 AL~iied~i~~--h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~----~A~~L~~la~~l 88 (111)
T PF04781_consen 15 ALEIIEDLISR--HGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD----SAHSLFELASQL 88 (111)
T ss_pred HHHHHHHHHHH--ccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh----HHHHHHHHHHHh
Confidence 34444444443 22222334777888888876542 57899999999999998 567777777665
Q ss_pred HHccCHHHHHHHHHHHHhhC
Q psy5660 90 FFLKNYRSCLTDCQIALKLK 109 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~ 109 (337)
-...-|.+|+.-|+++|...
T Consensus 89 ~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 89 GSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hhHHHHHHHHHHHHHHhccc
Confidence 55667999999999998763
No 301
>KOG2047|consensus
Probab=89.50 E-value=20 Score=36.89 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
-..+..-|..|-..|+.++|...+++|....=...+..+.+|++-|..-++..+++.|+...++|...
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 34555667777777888888888888877654444446777777777777777777777777777654
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.15 E-value=12 Score=32.04 Aligned_cols=65 Identities=6% Similarity=-0.008 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD---YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~---~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
...++..+|.-|.+.|++..|+..|.++...... -...+++..++.+..+++.....++.++-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4477888999999999999999999998876543 2467788899999999999999999998876
No 303
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.11 E-value=2.1 Score=39.60 Aligned_cols=53 Identities=15% Similarity=0.004 Sum_probs=30.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 86 a~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
|..++..|++.+|+..|++++.++|-+...+..+-..+..+|+--.|++.|.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 44555556666666666666666665555555555555666655555555544
No 304
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.05 E-value=4.4 Score=38.88 Aligned_cols=68 Identities=13% Similarity=0.008 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC---------------CHHHHHHHHHHHHhcCC
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL--------------KPD---------------YPKVKLRAAQCLFHLKK 128 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------------~P~---------------~~ka~~r~a~a~~~lg~ 128 (337)
....+..++.++.+.|++..|.+.+++||-. ++. ...|++|....+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3344455666666666666666666665421 111 13566666777777777
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy5660 129 FEDCTHLCDELLKENPT 145 (337)
Q Consensus 129 ~~eA~~~~~~al~l~P~ 145 (337)
+.-|.++|+-.+++||.
T Consensus 119 ~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPD 135 (360)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 77777777777777776
No 305
>KOG0530|consensus
Probab=89.02 E-value=2.5 Score=38.58 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR-SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~-~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
+..+-+++.++.++-+|. +-++|.-|-.+...+|+.. .-+..++.+|..+.+|..|+-.+-.|+...+.|+.-+.
T Consensus 93 dL~~El~~l~eI~e~npK----NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPK----NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred HHHHHHHHHHHHHHhCcc----chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 456778888999998898 6689998988888999988 89999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHH
Q psy5660 135 LCDELLKENPTDSTVID 151 (337)
Q Consensus 135 ~~~~al~l~P~~~~~~~ 151 (337)
++...|+.|-.|..+.+
T Consensus 169 y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 169 YADELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHHHHHhhhccchhh
Confidence 99999999877766654
No 306
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=88.98 E-value=12 Score=34.13 Aligned_cols=108 Identities=11% Similarity=0.034 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHH----hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----c---CHHHHHHHHHHHHhh
Q psy5660 40 LATTYKDEGNFNFK----CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----K---NYRSCLTDCQIALKL 108 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k----~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g---~~~~Al~d~~~Al~l 108 (337)
.+......|..+.. ..++.+|..+|.+|....-... .....++|.++..- + +...|+..+.+|-..
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 34455667777766 4588889999999888754311 23355666666543 1 334788888887766
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 109 KPDYPKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 109 ~P~~~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
. +..+.+++|.+|.. -.++.+|..||+++-+... ......+.
T Consensus 185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 6 78888888877754 3488899999998888754 44444444
No 307
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.98 E-value=4.9 Score=32.25 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH-------ccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGL-------KIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai-------~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
|..+--....+.+.|+|++++..-..|| +++.+...+-..+-++||.+...+|+.++|+..++.|-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4445566677778899887766666665 4555555667778889999999999999999999988654
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.62 E-value=1.2 Score=41.47 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR-AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r-~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.+|+.-++--.+.|-|..--..|.++++..|.|+..|.. .+.-+...++++.|...+.++|+++|+++.++...-+.
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 566666665567789999999999999999999998887 45667888999999999999999999999886654443
No 309
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.56 E-value=0.97 Score=33.02 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..++-.+=+.|+|.+|+.+|++||++
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56777788888888888888888888888775
No 310
>KOG0529|consensus
Probab=88.48 E-value=8.6 Score=37.21 Aligned_cols=103 Identities=14% Similarity=0.090 Sum_probs=79.9
Q ss_pred HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHH-HHHHHHHHhcCC
Q psy5660 52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--NYRSCLTDCQIALKLKPDYPKVK-LRAAQCLFHLKK 128 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--~~~~Al~d~~~Al~l~P~~~ka~-~r~a~a~~~lg~ 128 (337)
.++...+.-+.+-..++..+|+ .-.+|.-|..+..+.+ ++..-+..|.++++.||.|..+| ||+-.+-.....
T Consensus 86 ek~~~ld~eL~~~~~~L~~npk----sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPK----SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 3444567778888889999998 5588888999988765 57899999999999999998776 344444333333
Q ss_pred ---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 129 ---FEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 129 ---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
..+-++++.+++.-++.|-.+...+..+..
T Consensus 162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred cccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 788899999999989999888777766654
No 311
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.51 E-value=1.8 Score=39.24 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=49.8
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q psy5660 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125 (337)
Q Consensus 60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~ 125 (337)
|..+|.+|+.+.|+ .+..|+.+|..+...|+.-.|+-.|-+++-..-.+..|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~----~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPS----NGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TT----BSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCC----CCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999998 668999999999999999999999999997766667777777777766
No 312
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=86.67 E-value=1.2 Score=43.19 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLK---------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~---------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+..+|.-+|+|..|+...+- |.++ +.++..+|..|-||+.++||.+|++.+...|-
T Consensus 128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566779999999987653 2222 34678899999999999999999999998874
No 313
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=86.60 E-value=3 Score=37.78 Aligned_cols=62 Identities=11% Similarity=-0.109 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|...|.+|+.+.|.+...|..+|..+...|+.=+|+-+|-+++...-..+.+...+..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997754556666665555443
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.40 E-value=1 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~ 137 (337)
+++.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555666666666666665543
No 315
>KOG2047|consensus
Probab=85.99 E-value=10 Score=38.80 Aligned_cols=109 Identities=14% Similarity=0.160 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---------Cc-----hHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---------DN-----DVNAQLYNNRAASNFFLKNYRSCLT 100 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---------~~-----~~~~~~~~nra~~~~~lg~~~~Al~ 100 (337)
.+-++.|..+-+-|..-++.++++.|+.+.+.|..+-.. .+ .....+|+-.+.....+|-+.++-.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 456788999999999999999999999999999886221 00 0134566666777777889999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.|++.|.+.=..+....+.|.-+....-+++|.+.|++++.+.
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 9999999887777778888888888888888888888888775
No 316
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.66 E-value=9.9 Score=27.75 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=17.4
Q ss_pred hcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDE-------LLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 125 ~lg~~~eA~~~~~~-------al~l~P~~~~~~~~l~~~~~ 158 (337)
..|++.+|+.+|+. +++..|++........++.+
T Consensus 18 ~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~e 58 (75)
T cd02682 18 KEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINE 58 (75)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 44455544444444 44556776655444444443
No 317
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.32 E-value=5.2 Score=33.02 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 112 YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 112 ~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
-....+..|+..+..|++..|.+.++.++..+|+|.+++.++..+.++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3456677788888899999999999999999999999988888877653
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.24 E-value=24 Score=30.47 Aligned_cols=100 Identities=7% Similarity=-0.060 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYPKVKLR 118 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~ka~~r 118 (337)
..+....|.....+|+-..|+..|+++-.-.+...-..-.+...-|..++..|-|+....-.+. |.-+ |-...|.-.
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEA 172 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREA 172 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHH
Confidence 3445567788888999999999999987765532222344555455566677888876554432 2222 323344445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+|.+.++.|++..|.++|.....
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 78888999999999999998775
No 319
>KOG2581|consensus
Probab=84.81 E-value=15 Score=35.54 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=76.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHhhC
Q psy5660 32 PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS--NFFLKNYRSCLTDCQIALKLK 109 (337)
Q Consensus 32 p~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~--~~~lg~~~~Al~d~~~Al~l~ 109 (337)
|+.....+.|.-+.-.|....-+++|..|.+++.+|+...|++..+-..--.|...| .+-+|++.+-.-.++..++
T Consensus 238 pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~-- 315 (493)
T KOG2581|consen 238 PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR-- 315 (493)
T ss_pred ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH--
Confidence 434455578888888888888888888898888888888887544333333333333 3345776654444433221
Q ss_pred CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 110 PDYPKVKLRAAQC--LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 110 P~~~ka~~r~a~a--~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+....||.++++ .-.+.+|.+-++-|..-+..|-...-+..+...+
T Consensus 316 -ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NV 363 (493)
T KOG2581|consen 316 -KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNV 363 (493)
T ss_pred -HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 234556666554 3456677788888877777776665555554444
No 320
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.52 E-value=8.3 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
..+.|..+..+|..+=..|+|++|+.+|.+|++.
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467788888888888899999999999988874
No 321
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.37 E-value=2.3 Score=30.19 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|-.+=+.|+|++|+.+|++|++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677778888888888888888888888874
No 322
>KOG2300|consensus
Probab=84.21 E-value=27 Score=34.80 Aligned_cols=100 Identities=21% Similarity=0.182 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hCCCC-----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-LKPDY----- 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-l~P~~----- 112 (337)
-.|....-.|-.+..-+.|+.|...+..|.+.-.. .++.+.+-.|+|..|++.|+-. ++-++++ +.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-IDLQAFCNLNLAISYLRIGDAE----DLYKALDLIGPLNTNSLS 439 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-HHHHHHHHHhHHHHHHHhccHH----HHHHHHHhcCCCCCCcch
Confidence 34566667788888888999999999999987543 4457788889999999977643 3334443 34543
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
..++|..|.-.+..+++.||.....+.|++.
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2466778888889999999999999999986
No 323
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=83.77 E-value=8.3 Score=37.74 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----Cch-------HHHHHHHHHHHHHHHc--cCHH-HHHHHHHHHHh
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DND-------VNAQLYNNRAASNFFL--KNYR-SCLTDCQIALK 107 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~-------~~~~~~~nra~~~~~l--g~~~-~Al~d~~~Al~ 107 (337)
......|-.++..|++.+|+..|+..|..-|- +.. +..++.--.-.+.+.+ +... ....+-++.++
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lE 284 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLE 284 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 34556799999999999999999999986442 111 1222221111122221 1111 12223334333
Q ss_pred ---------hCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 108 ---------LKPDYPKVKLRAA-QCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 108 ---------l~P~~~ka~~r~a-~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
|.|.+.---+|.| ...++.++|.-|..+.++.|++.|....
T Consensus 285 LAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 285 LAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3454443334444 3457889999999999999999987643
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.29 E-value=3.2 Score=36.32 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~A 98 (337)
++-....|..|. ..+-.+|+..|.+++++...+..+++.++.-+|.+++++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444333 455666666666666665555455566666666666666666655
No 325
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.27 E-value=2.5 Score=31.05 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
..|..+..+|..+=+.|+|.+|+.+|.+||+.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56677778888888888888888888887764
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.23 E-value=7.8 Score=28.58 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK---LRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~---~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.-.|.=++...+.++|+..+++|++..++....+ --+++++...|+|++++++.-.=+.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677889999999999999988766444 34577889999999999886655543
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.14 E-value=2.5 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+.+|.+|..+|+.+.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888884
No 328
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.06 E-value=2.6 Score=30.85 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
..|..+..++-.+=+.|+|.+|+.+|.+||+.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56777777888888888888888888888874
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.83 E-value=32 Score=30.10 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=44.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKP-DYPKVK--LRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~--~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
.|.++...++++.|+..++.++..-. .+.+++ .|+|.+...+|.+++|+..++..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 56667788999999999999986543 344544 68999999999999999887643
No 330
>KOG3617|consensus
Probab=82.65 E-value=11 Score=39.68 Aligned_cols=100 Identities=9% Similarity=-0.053 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHc----------cccCC------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLK----------IKCAD------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~----------~~p~~------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
.|.+.+..+-..++.+.|+++|.++-. .+|.. ..-...+|..-|.-....|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 455566666667788888998887632 12210 01134788888888888999999999887764
Q ss_pred h---------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 107 K---------------------LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 107 ~---------------------l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
. ....+..|.|.+|+-|...|++.+|+.+|.++-..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3 24567788999999999999999999998887654
No 331
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.57 E-value=4.9 Score=24.83 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=15.9
Q ss_pred HHHHHHHHHccCHHHHHHH--HHHHHhhCCC
Q psy5660 83 NNRAASNFFLKNYRSCLTD--CQIALKLKPD 111 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d--~~~Al~l~P~ 111 (337)
...|.++...|+|++|+.. ++-+..+++.
T Consensus 5 y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456666666666666666 3355555554
No 332
>KOG0985|consensus
Probab=82.55 E-value=4.8 Score=43.27 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
....-|+.+|..|.|+.|--+|. +..-|..+|.....+|.|+.|++..++| ++.|.|-..+.+
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~------------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYS------------NVSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFA 1258 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHH
Confidence 45678999999999999999997 3456888999999999999999999988 456666555555
Q ss_pred HHhcCCHHHH
Q psy5660 123 LFHLKKFEDC 132 (337)
Q Consensus 123 ~~~lg~~~eA 132 (337)
+...+.|.-|
T Consensus 1259 Cvd~~EFrlA 1268 (1666)
T KOG0985|consen 1259 CVDKEEFRLA 1268 (1666)
T ss_pred HhchhhhhHH
Confidence 5555444444
No 333
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.42 E-value=28 Score=29.08 Aligned_cols=94 Identities=14% Similarity=-0.071 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+....+.+.-.......+..++.......=-+.|+.+ .+-.--|..++..|+|.+|+..++....-.+..+-+--.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 5566677777777778899998888877777788844 555667888999999999999999988888777777778
Q ss_pred HHHHHHhcCCHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLC 136 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~ 136 (337)
++.|+..+|+...=....
T Consensus 84 ~A~CL~al~Dp~Wr~~A~ 101 (153)
T TIGR02561 84 LALCLNAKGDAEWHVHAD 101 (153)
T ss_pred HHHHHHhcCChHHHHHHH
Confidence 899999999887655443
No 334
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.30 E-value=14 Score=27.05 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=12.5
Q ss_pred hcCCHHHHHHHHHHHHhh
Q psy5660 125 HLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l 142 (337)
..|+|++|+.+|..+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 567777777777777653
No 335
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.23 E-value=4.7 Score=33.27 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA 132 (337)
....+|...+..|+|+-|+..++.++..+|+|..+...++.++.++|.-.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3445777788889999999999999999999999998889988887654443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.01 E-value=15 Score=32.79 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=37.9
Q ss_pred HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ 113 (337)
...+.+.+...+|+.....-++.+|.+...+.. +=..+.-.|+|.+|+..|+-+-.+.|.+.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~Rhf----lfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHF----LFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhH----HHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345666677777777777777777765432222 22233345777777777777777777654
No 337
>KOG0529|consensus
Probab=81.99 E-value=40 Score=32.77 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=75.8
Q ss_pred HHhCcH-HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 52 FKCNKY-RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------------LKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 52 ~k~g~y-~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~------------lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
.+.|.| ..+++.=++.+..+|. ...+|+-|-.+... ..-.++-+.....+|+.+|+..-+|+.
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe----~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~h 114 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPE----FYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHH 114 (421)
T ss_pred HhccccchHHHHHHHHHHhhCch----hhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHH
Confidence 344566 4466666666666776 44555554443332 234666777888999999999999999
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+..++...+ ++..-++.|.++|++||.|-.....+.-+..+
T Consensus 115 R~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~ 157 (421)
T KOG0529|consen 115 RKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ 157 (421)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence 999998776 47888999999999999998777766665554
No 338
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.96 E-value=10 Score=34.20 Aligned_cols=64 Identities=25% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--Y----PKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~----~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
....+...+|.-|+++|+|++|+..++.+...-.. . ...+.++..|+..+|+.++.+..+-+++
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 36677788999999999999999999998766332 2 3566788899999999999888776554
No 339
>KOG0985|consensus
Probab=81.62 E-value=19 Score=38.94 Aligned_cols=88 Identities=15% Similarity=0.222 Sum_probs=67.6
Q ss_pred HHHHHHHHhCcHHHHHHHHHH------HHcc----------------ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 46 DEGNFNFKCNKYRNAIINYTE------GLKI----------------KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~------ai~~----------------~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
+-|+.+...+-|++|...|.+ |+.. .|+ .+.+|+.+|.+.++.|...+|++.+-
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 346666777777777776653 3322 233 45899999999999999999999997
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+| +++..|...-.+....|.|++-+.++..+-+-
T Consensus 1129 ka-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1129 KA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred hc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 65 56778888888889999999999888777643
No 340
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.47 E-value=31 Score=33.14 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------------ccC------------CchHHHHHHHHHHHHHHHc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------------KCA------------DNDVNAQLYNNRAASNFFL 92 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------------~p~------------~~~~~~~~~~nra~~~~~l 92 (337)
-....+...+.++..+|++..|.+...+||=. +.. +.... .+.........+.
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff-lal~r~i~~L~~R 116 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF-LALFRYIQSLGRR 116 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH-HHHHHHHHHHHhc
Confidence 45677778888888888888888877777632 111 11111 2222344556678
Q ss_pred cCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 93 KNYRSCLTDCQIALKLKPD-YPK-VKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 93 g~~~~Al~d~~~Al~l~P~-~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|-++.|++.|+-.+.+||. ++- +.+.+=...++.++|+-=++.++....
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999999998 554 444445555777899888888887665
No 341
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=4.6 Score=37.40 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
-+.-....|++..|...+..|+..+|.+..+...+|.|+...|+.++|...+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455667889999999999999999999999999999999999999999887654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.17 E-value=2.1 Score=24.10 Aligned_cols=24 Identities=4% Similarity=-0.241 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
.++.++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355667777777777777766554
No 343
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.31 E-value=49 Score=31.09 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH---HhcCCHHHHH
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL---FHLKKFEDCT 133 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~---~~lg~~~eA~ 133 (337)
.+..+..|.+||+.+|++. .++..+=.+..+..+-.....-+++++..+|++...|...-... ...-.+....
T Consensus 47 ~E~klsilerAL~~np~~~----~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE----RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 5677899999999999743 44444444455677888888999999999999886665443332 3344678888
Q ss_pred HHHHHHHhh
Q psy5660 134 HLCDELLKE 142 (337)
Q Consensus 134 ~~~~~al~l 142 (337)
..|.++++.
T Consensus 123 ~~y~~~l~~ 131 (321)
T PF08424_consen 123 DVYEKCLRA 131 (321)
T ss_pred HHHHHHHHH
Confidence 888888864
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.95 E-value=15 Score=36.48 Aligned_cols=52 Identities=15% Similarity=0.039 Sum_probs=36.7
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
..+..|+...|-+....++.-.|.+| ..-.-++.++..+|.|+.|+.+..-+
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 34566788888888888888777765 34444677777888888887766443
No 345
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.54 E-value=93 Score=33.30 Aligned_cols=101 Identities=10% Similarity=-0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccC-----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCA-----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----- 112 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~-----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----- 112 (337)
--.-++.....+.+|.+|-.+..++-..-+. ...+.+..-.-+|.+-...|+.+.|++.++.|+..=|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3345566666677888888777777655433 334567777778999999999999999999999987764
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.-++...|.+..-.|++++|..+.+.+.++.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3566778999999999999999999988873
No 346
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=79.18 E-value=14 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=..|+|++|+.+|.+|++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56778888888888899999999999999875
No 347
>KOG1310|consensus
Probab=79.14 E-value=7.1 Score=39.07 Aligned_cols=71 Identities=11% Similarity=-0.050 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q psy5660 39 ELATTYKDEGNFNFKC---NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~---g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ 113 (337)
..+.-+-+++..+++. |+--.|+.--..|++++|. .-.+++.++.|...++++.+|+.+...+....|.+.
T Consensus 406 ~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s----~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 406 DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS----IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH----HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 4455566777777775 4667789999999999997 668899999999999999999998877777777543
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.51 E-value=68 Score=30.13 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=65.7
Q ss_pred HHHHHHHccccCCchHHHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660 62 INYTEGLKIKCADNDVNAQLYNNRAASNFFL------------KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 62 ~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l------------g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~ 129 (337)
.-|++.+..+|.|. .+|.....-.-.+ ...+..+..+++||+.+|++.+-+..+-.+..+...-
T Consensus 6 ~el~~~v~~~P~di----~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVRENPHDI----EAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhCcccH----HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 45777888888854 4444444332222 2245677889999999999999999888888999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHH
Q psy5660 130 EDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~~~~~~ 151 (337)
+...+-+++++..+|++..+..
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~ 103 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWR 103 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHH
Confidence 9999999999999999876643
No 349
>KOG1839|consensus
Probab=76.03 E-value=26 Score=38.70 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
....+..+.+.|.....++.+..|.+ ..+++.+ .|. .+.+|.-+|..+.++|++++|+..+.+|.-+
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~----~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPE----VASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchh----HHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 34678888888888888888888777 4444433 333 6677888888888899999999888877654
Q ss_pred C--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 K--------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 ~--------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
. |+...+|.+++......+....|+..+.+++.+
T Consensus 1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 2 344577788888888888888888888888765
No 350
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.59 E-value=5.1 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.108 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=..|+|++|+..|.+|++.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 45667777777777778888888888888874
No 351
>KOG0546|consensus
Probab=75.55 E-value=2.1 Score=40.46 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+.+-..++.+.|..|+..-..++..++. ..-+++.|+.+++.+.++++|+.+...|....|++....-++
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s----~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERS----KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChh----hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 34555667777788887777777775554 567889999999999999999999999999999876543333
No 352
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.46 E-value=6.4 Score=28.39 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=+.|+|++|+.+|..|++.
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666777777777788888888888888764
No 353
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.38 E-value=33 Score=30.87 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
.+|.-|+.+|++++|++.++.+..
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~ 206 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAAS 206 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 354
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.17 E-value=20 Score=33.99 Aligned_cols=76 Identities=18% Similarity=0.142 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.+-.|||.+.-+..-...++....... -+| .+--.+--+|..+..+|+.++|...|++++.+.++..+...++.+.
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~-~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALL-ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhh-cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 556688888766666666666555443 332 3445556788999999999999999999999988876665555443
No 355
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.17 E-value=30 Score=25.30 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=15.7
Q ss_pred HhcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELL-------KENPTDSTVIDLRTSC 156 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al-------~l~P~~~~~~~~l~~~ 156 (337)
-..|+|++|+.+|..++ +..|+...-..+..++
T Consensus 17 D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki 56 (77)
T cd02683 17 DQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKI 56 (77)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34455555555555554 4455544333333333
No 356
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.61 E-value=70 Score=30.93 Aligned_cols=67 Identities=15% Similarity=0.015 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL--KNYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l--g~~~~Al~d~~~Al~ 107 (337)
-.+.....++-.+|..++|..|.+.+...+..-|.... ...+.+++.+|... -++.+|.+.++..+.
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34567788999999999999999999999885333222 45677777777754 578889888887665
No 357
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=74.50 E-value=5.3 Score=37.41 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN-RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~n-ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
..+..-.+-..+.|-|..--..|.+++...|.+. .+|.- .+.-+...+|+.+|...+.++|++||.+++.|+
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv----dlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV----DLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----eeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 4455556666677788888889999999999944 66654 334455679999999999999999999987554
No 358
>KOG1550|consensus
Probab=74.32 E-value=40 Score=34.33 Aligned_cols=92 Identities=13% Similarity=-0.017 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHh---CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 43 TYKDEGNFNFKC---NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----KNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 43 ~~k~~Gn~~~k~---g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.....|..+... ++++.|..+|..|...... .+..++|.|+..- .+...|...+.+|.+.+ ++.|
T Consensus 327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~------~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI------LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 334445544433 4689999999999987644 7788899998642 48999999999999988 6777
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy5660 116 KLRAAQCLFHL-KKFEDCTHLCDELLKE 142 (337)
Q Consensus 116 ~~r~a~a~~~l-g~~~eA~~~~~~al~l 142 (337)
.++++..+..- +++..+.-.+.....+
T Consensus 399 ~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 77777665443 8888777776666555
No 359
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.12 E-value=20 Score=33.20 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
.....+......+...|+++.++...++.+..+|.+ ..+|..+=.++++.|+...|+..|++.-+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~----E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYD----EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345566677888888999999999999999999984 47788788899999999999998887644
No 360
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.85 E-value=26 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.029 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=..|+|++|+.+|.+||+.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56778888888888899999999999999874
No 361
>KOG3807|consensus
Probab=73.10 E-value=88 Score=29.83 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---------------------
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--------------------- 108 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------------------- 108 (337)
...+..+..+-|+.-..|++++|. .+.+|.-+|.- .---..+|...+++||+.
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~e----CA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~ 266 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNE----CATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQ 266 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCch----hhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhh
Confidence 345555666666666677777765 44555443321 011122222223332221
Q ss_pred --CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 109 --KPDYPKVKL--RAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 109 --~P~~~ka~~--r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
...|+..|. |+|.|..++|+..+|++.++...+-.|
T Consensus 267 ~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 267 LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 123444554 779999999999999999988876655
No 362
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.66 E-value=42 Score=30.55 Aligned_cols=62 Identities=5% Similarity=-0.067 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK 127 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg 127 (337)
...|+..|.+|-.... ..+..++|.+|.. -.|+.+|+..+.+|-+... ..+.++++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~~------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELGN------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhcC------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3589999999988763 3778888988865 3489999999999999887 88999999 766666
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.20 E-value=22 Score=33.12 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+.+.-.|..|...|.+.+|++.+++++.++|-+.+....+..+...
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~ 325 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT 325 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 34555678899999999999999999999999887777666655543
No 364
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.72 E-value=36 Score=24.71 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=11.4
Q ss_pred hcCCHHHHHHHHHHHHhh
Q psy5660 125 HLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l 142 (337)
..|+|++|+..|..+++.
T Consensus 18 ~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 18 QRGDAAAALSLYCSALQY 35 (75)
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 556667666666666643
No 365
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.72 E-value=8.3 Score=28.11 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=+.|+|.+|+.+|..||+.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666677777777778888888888888764
No 366
>KOG2300|consensus
Probab=70.36 E-value=1.2e+02 Score=30.35 Aligned_cols=113 Identities=19% Similarity=0.081 Sum_probs=73.7
Q ss_pred HHHhhccccCCCCCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHccccCCc---hHHHHHHHHHHHHHHHcc-CHH
Q psy5660 22 VEGLQQLKYDPLENTPEELATTYKDEGNFNFKC-NKYRNAIINYTEGLKIKCADN---DVNAQLYNNRAASNFFLK-NYR 96 (337)
Q Consensus 22 lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p~~~---~~~~~~~~nra~~~~~lg-~~~ 96 (337)
+.++||+--- .-.-.-.|......|..++.- ++.+.|..+.++|..+...-+ ++.-..++-+|.+|.... .+.
T Consensus 29 IkClqA~~~~--~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~ 106 (629)
T KOG2300|consen 29 IKCLQAIFQF--QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFP 106 (629)
T ss_pred HHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 4455554321 122234466667777777654 667888888888877653322 345566777778887776 777
Q ss_pred HHHHHHHHHHhhCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYP----KVKLRAAQCLFHLKKFEDCTHLC 136 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~----ka~~r~a~a~~~lg~~~eA~~~~ 136 (337)
.|-...++|+++-..++ +-.+.+|+.+.--.++..|++.+
T Consensus 107 ~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 107 PAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 78888888888765543 55567777777777888877763
No 367
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=70.29 E-value=20 Score=25.81 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=7.9
Q ss_pred hcCCHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELL 140 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al 140 (337)
..|++++|+.+|..|+
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555554444
No 368
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=69.70 E-value=53 Score=32.55 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV-NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~-~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
+-.+|-.+.+++++.+|...+.+..+...+.+.. ...++.+|-.--+-+.|.+.-.......-+..|+..-..+-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 4468899999999999999999998876665444 337778887777777887776665555566678777788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q psy5660 123 LFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l 142 (337)
.+..+.|+.|++.+..-...
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999987655543
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.62 E-value=76 Score=32.71 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC-------C---------------chHHHHHHHHHHHHHHHccCHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA-------D---------------NDVNAQLYNNRAASNFFLKNYRS 97 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~-------~---------------~~~~~~~~~nra~~~~~lg~~~~ 97 (337)
.+..|.--|-.....+..+.|.+++.+|++.-.. . ..+...+....+.+.+-++++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 3556666677777777777777777777764211 1 02344555667888888999999
Q ss_pred HHHHHHHHHhhC---C------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5660 98 CLTDCQIALKLK---P------DYPKVKLRAAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 98 Al~d~~~Al~l~---P------~~~ka~~r~a~a~~~lg~~~eA~~~~~ 137 (337)
|......+.... | -.+..+|-.|..+...|+.+.|...|.
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 988888776653 2 246778889999999999999999998
No 370
>KOG1839|consensus
Probab=68.59 E-value=27 Score=38.57 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK----- 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~----- 109 (337)
+.+..|...+..+.+.+++.+|+..-.+|.-+.. .+.......|.|++...+..++...|+..+.+|+.+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 5677888899999999999999998888876532 2344477899999999999999999999999988763
Q ss_pred CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 110 PDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 110 P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
|.+ .-...+++..+..+++++-|+++.+.|++++
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333 3334567778888999999999999999864
No 371
>KOG3783|consensus
Probab=67.95 E-value=34 Score=34.37 Aligned_cols=77 Identities=12% Similarity=-0.054 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.|.-+...+..+...|+-+.|+...+.++. +.-..+...++.-+|.++.-+.+|.+|.+++......+ ++.+|+|..
T Consensus 266 ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y~Y 342 (546)
T KOG3783|consen 266 GALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFYTY 342 (546)
T ss_pred CccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHHHH
Confidence 344455666666667778888999998888 55567788999999999999999999999998876655 577777754
No 372
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=67.20 E-value=32 Score=27.79 Aligned_cols=63 Identities=16% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccC-----Cch------HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCA-----DND------VNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~-----~~~------~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
.+...|+..++.+++-.|+-+|++|+.+.-+ ..+ +...-..|+|.-+...|+-+=.+.+.+-|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 4567899999999999999999999986432 111 22333456677677777777777666543
No 373
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.45 E-value=1.3e+02 Score=29.11 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH-hhCCCCHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL----KPDYPKVKLRAAQCLFH---LKKFEDCTHLCDELL-KENPTDSTV 149 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----~P~~~ka~~r~a~a~~~---lg~~~eA~~~~~~al-~l~P~~~~~ 149 (337)
.+....|+=.+|....+|+.-+...+..-.+ -++.....+..|.|+.. .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5566678888899999999988888776555 34455666778888888 999999999999954 456677889
Q ss_pred HHHHHHHHHH
Q psy5660 150 IDLRTSCINK 159 (337)
Q Consensus 150 ~~~l~~~~~~ 159 (337)
..+.+++.+.
T Consensus 220 ~gL~GRIyKD 229 (374)
T PF13281_consen 220 LGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.35 E-value=15 Score=36.51 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=64.0
Q ss_pred HHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660 50 FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 50 ~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~ 129 (337)
..-..|.|++|......+=..-.... ....-|-....++|+++.|+..+...|.-+-......--.|...-++|-+
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTD----STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHH
Confidence 33445677777766654433222111 11222334566899999999999888877666677766677778899999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy5660 130 EDCTHLCDELLKENPT 145 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~ 145 (337)
++|...+++.+.++|.
T Consensus 408 d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 408 DKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHhccCCh
Confidence 9999999999999875
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.95 E-value=37 Score=29.10 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 94 ~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
.....++..++.++..| ++..+.+.+.++..+|+.++|.++.+++..+-|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34556667777888888 6889999999999999999999999999999993
No 376
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=65.94 E-value=20 Score=26.14 Aligned_cols=43 Identities=28% Similarity=0.616 Sum_probs=28.3
Q ss_pred HHhhccccCCCCCCh--------HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy5660 23 EGLQQLKYDPLENTP--------EELATTYKDEGNFNFKCNKYRNAIINYT 65 (337)
Q Consensus 23 ealqaL~~dp~~~~~--------~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~ 65 (337)
++|..+..-|.++++ .+.|..|.+.|..+++.|++..|+.++.
T Consensus 9 ~al~~i~~~~~~~s~~~~~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 9 EALESIEIAPPEGSPLYDAAEEILEMAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHCC-----TS---HCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHhhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566666643333433 3678899999999999999999988765
No 377
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.91 E-value=41 Score=33.28 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
..|-.+|...+..|+++-|..++.+
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4455555555555555555555444
No 378
>KOG2581|consensus
Probab=64.98 E-value=1.2e+02 Score=29.61 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL----KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.+.+.+.+=.+|+..+-|++|-....++.-- +....+.+|..|.+..-.++|..|.+++-.|+...|.+.
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4555555666777788888887776665421 113346667889999999999999999999999999854
No 379
>KOG2396|consensus
Probab=64.89 E-value=59 Score=32.53 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=50.6
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
.-.+.+-+.+.|..--..|.+++...|+++ .+|.-.|.=.+..+ |..+|.+.+.++|+.+|++++-|
T Consensus 110 ~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~----dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 110 SYIAFCKKKKTYGEVKKIFAAMLAKHPNNP----DLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCCCc----hhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 333444455558888899999999999954 77776665555544 49999999999999999998544
No 380
>KOG0292|consensus
Probab=64.71 E-value=1.8e+02 Score=31.34 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHH--HHHHHHHHHHHH-----H-------ccCHHHH--
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVN--AQLYNNRAASNF-----F-------LKNYRSC-- 98 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~--~~~~~nra~~~~-----~-------lg~~~~A-- 98 (337)
+....-.+.|-.+...|++.+|+++|+.+|-.-|- +.... +.-....+.-|+ . ..+..++
T Consensus 989 ~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 989 SQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 44556668899999999999999999999876542 11111 111111121111 1 1345555
Q ss_pred HHHHHHHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 99 LTDCQIALKLKPDYP-KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 99 l~d~~~Al~l~P~~~-ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
+..|-.-..+.|-+. -|+...-..+.+++++..|.....+.|++.|..+.+.
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 333334455666544 4555556778999999999999999999998876553
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.26 E-value=82 Score=33.67 Aligned_cols=100 Identities=9% Similarity=-0.128 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----CC
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV-NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP----DY 112 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~-~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P----~~ 112 (337)
...|+.---.|.+....|+.+.|+..-+.++..-|.+... ...++++.|.+++-.|+|.+|+.....+.++.- -+
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 3445555556777888899999999999999998865443 678999999999999999999999999888743 22
Q ss_pred H--HHHHHHHHHHHhcC--CHHHHHHHHH
Q psy5660 113 P--KVKLRAAQCLFHLK--KFEDCTHLCD 137 (337)
Q Consensus 113 ~--ka~~r~a~a~~~lg--~~~eA~~~~~ 137 (337)
. .+.+-.+.++.+.| .+.+....+.
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 34455677788888 3344444433
No 382
>KOG3617|consensus
Probab=64.23 E-value=45 Score=35.52 Aligned_cols=85 Identities=14% Similarity=0.078 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHccccCCchH-HHHHHHHHHHHHHHccCHHHHHHHHHHH----------HhhCCCCHH----------H
Q psy5660 57 YRNAIINYTEGLKIKCADNDV-NAQLYNNRAASNFFLKNYRSCLTDCQIA----------LKLKPDYPK----------V 115 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~-~~~~~~nra~~~~~lg~~~~Al~d~~~A----------l~l~P~~~k----------a 115 (337)
+-+++..+++|+++......+ .-.-|+|-|.-....++...|+.+|+++ |.-+|...+ .
T Consensus 835 lyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred HHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 345556666666654432211 3345777777777778888888888764 444565433 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|-..|+-+...|+.+.|+.+|..+-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh
Confidence 34458888889999999999988763
No 383
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.92 E-value=14 Score=27.19 Aligned_cols=20 Identities=15% Similarity=-0.041 Sum_probs=13.6
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q psy5660 123 LFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l 142 (337)
+-+.|+.++|+.+|++++..
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hhhcCCHHHHHHHHHHHHHH
Confidence 33557777777777777754
No 384
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.79 E-value=20 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q psy5660 123 LFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~ 141 (337)
+-..|++++|+.+|..|+.
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3345555555555555553
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=62.11 E-value=15 Score=23.75 Aligned_cols=25 Identities=4% Similarity=-0.049 Sum_probs=23.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
.++|.+|+.+|+++.|....+.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999999995
No 386
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.98 E-value=57 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLK 69 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~ 69 (337)
+.+.....+|-..+-.|+|..|.+...++-+
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444455555555555555555555533
No 387
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.97 E-value=49 Score=32.28 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=57.0
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccC-----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCA-----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~-----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
..+.-.|+|..|++.... |+++.. .+.-....++..|-||+.+++|..|+..+...|-.--+.-..+.....-+
T Consensus 130 Rvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~ 208 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQY 208 (404)
T ss_pred HHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 444456899999887643 333221 12235567788999999999999999999988743211110111111111
Q ss_pred -HhcCCHHHHHHHHHHHHhhCCC
Q psy5660 124 -FHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 124 -~~lg~~~eA~~~~~~al~l~P~ 145 (337)
.-.+..+.....+--++.+.|.
T Consensus 209 d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 209 DQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hHHHhHHHHHHHHHHHHHHhCCC
Confidence 1234455556666666677775
No 388
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=60.67 E-value=1.7e+02 Score=28.42 Aligned_cols=63 Identities=8% Similarity=-0.112 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-hHHHHHHHHHHHHHHHc--cCHHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-DVNAQLYNNRAASNFFL--KNYRSCLTDCQI 104 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-~~~~~~~~nra~~~~~l--g~~~~Al~d~~~ 104 (337)
.....++..+|..++|..|...+.+++...++.. .-.-.+|.+++.+|... -++.+|...+++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3444566789999999999999999998754311 11456777888888765 478888888874
No 389
>KOG4014|consensus
Probab=60.52 E-value=1.1e+02 Score=26.70 Aligned_cols=110 Identities=6% Similarity=-0.062 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHh
Q psy5660 40 LATTYKDEGNFNFK-----CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-----K--NYRSCLTDCQIALK 107 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k-----~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-----g--~~~~Al~d~~~Al~ 107 (337)
.+......|+-++. .++...|++.|..|...+.. .+..+.|+.+..- + +..+|.+.+++|-.
T Consensus 67 y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~------~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 67 YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP------QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACD 140 (248)
T ss_pred CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH------HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence 34555566776653 24688999999998886543 5566677766532 2 47789999999887
Q ss_pred hCCCCHHHHHHHHHHHH------------------------hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 108 LKPDYPKVKLRAAQCLF------------------------HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~------------------------~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++- ..|-+.+..-++ -+.+.+.|.++.-++-++ ++..+-..+++..++
T Consensus 141 l~~--~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 141 LED--GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKL 212 (248)
T ss_pred CCC--chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHc
Confidence 764 333333333333 235667777777777766 345555555555444
No 390
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.02 E-value=15 Score=26.74 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=10.1
Q ss_pred ccCHHHHHHHHHHHHh
Q psy5660 92 LKNYRSCLTDCQIALK 107 (337)
Q Consensus 92 lg~~~~Al~d~~~Al~ 107 (337)
.|||++|+..|..|++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4666677666666654
No 391
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.74 E-value=17 Score=26.84 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLK 69 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~ 69 (337)
+.|..+.++|-.+=..|+.++|+.+|.+|+.
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3444455555555445555555555555554
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.73 E-value=70 Score=29.89 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~ 96 (337)
.+.+|.+.+.+++++|+..|.+.+..... ..........+++..|...|+|.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 56788889999999999999998876221 11124456667787777777643
No 393
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.61 E-value=46 Score=23.77 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q psy5660 125 HLKKFEDCTHLCDELLK 141 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~ 141 (337)
..|++++|+.+|..|+.
T Consensus 18 ~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 18 EDGNYEEALELYKEALD 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555543
No 394
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.05 E-value=27 Score=31.19 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=55.8
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 88 ~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
..++-+...+||.+.+.-++-+|.+.-....+-+.+.-.|+|+.|...++-+-+++|+...-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 45677889999999999999999999888888999999999999999999999999987433
No 395
>KOG2422|consensus
Probab=58.92 E-value=1.6e+02 Score=30.20 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=70.2
Q ss_pred HHHHHHHHh---CcHHHHHHHHHHHHcccc-CC-------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660 46 DEGNFNFKC---NKYRNAIINYTEGLKIKC-AD-------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------ 108 (337)
Q Consensus 46 ~~Gn~~~k~---g~y~~Ai~~Y~~ai~~~p-~~-------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------ 108 (337)
+.|+.+|+- ..|++|...|.-|....+ ++ ......-....|.++...|+..-|.+...++|=.
T Consensus 240 q~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~h 319 (665)
T KOG2422|consen 240 QKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALH 319 (665)
T ss_pred cCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhc
Confidence 344444432 348888888887776543 21 1234444556788888888877666666655421
Q ss_pred ---------------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHH
Q psy5660 109 ---------------KPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT-DSTV 149 (337)
Q Consensus 109 ---------------~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~-~~~~ 149 (337)
.|.| ..+++|.-+.+...|-+.-|.++|+-.++++|. ++-.
T Consensus 320 p~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 320 PNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred cccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 1222 467778888888999999999999999999998 6543
No 396
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.76 E-value=1.3e+02 Score=26.96 Aligned_cols=94 Identities=13% Similarity=-0.008 Sum_probs=55.5
Q ss_pred HhCcHHHHHHHHHHHHccccC--------CchHHHHHHHHHHHHHHHccC-HHHHHH-HHHHHHh-h-CCCCH--HHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKIKCA--------DNDVNAQLYNNRAASNFFLKN-YRSCLT-DCQIALK-L-KPDYP--KVKLR 118 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~~p~--------~~~~~~~~~~nra~~~~~lg~-~~~Al~-d~~~Al~-l-~P~~~--ka~~r 118 (337)
-.|+|+.|++.-.-||+.+=. -+...+.-..+-|......|+ ++-... .+..... . =|+.+ |-|-.
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~ 174 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKA 174 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 457899999999999987522 122334444445555555555 112211 1111111 1 13334 44445
Q ss_pred HHHHHH---------hcCCHHHHHHHHHHHHhhCCCC
Q psy5660 119 AAQCLF---------HLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 119 ~a~a~~---------~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.|..++ ..++...|+.+++++++++|+-
T Consensus 175 ~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 175 AGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 566663 4568899999999999999764
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=57.77 E-value=28 Score=19.47 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHH
Q psy5660 96 RSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 96 ~~Al~d~~~Al~l~P~~~ka~ 116 (337)
+.|...+++++...|.+...|
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W 24 (33)
T smart00386 4 ERARKIYERALEKFPKSVELW 24 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHH
Confidence 333344444444444333333
No 398
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.35 E-value=58 Score=25.23 Aligned_cols=47 Identities=15% Similarity=-0.061 Sum_probs=29.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q psy5660 82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK 128 (337)
Q Consensus 82 ~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~ 128 (337)
....|...+-.||+..|.....++-+..+...-+|.-.|++....|+
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 33455555666777777777777766655555566666666665554
No 399
>PF12854 PPR_1: PPR repeat
Probab=57.17 E-value=30 Score=20.64 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 112 YPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 112 ~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
|.-.|-.+-.++.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455666677777778888888777654
No 400
>KOG0890|consensus
Probab=57.10 E-value=1.7e+02 Score=35.01 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHH---ccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGL---KIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai---~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
.++++++..--...+..+-|-..++++ ..+|+-....+.+|.+.|....+.|.++.|-...-.|.+.. -+.++..
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 455554443322223444444444444 34555555688999999999999999999999999998877 4788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.|+.+...|+-..|+..++..++++
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999764
No 401
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=56.38 E-value=28 Score=28.69 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=43.0
Q ss_pred CCCCCCCCcCCCCCCCCCChhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHcccc
Q psy5660 1 MEKHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCN---KYRNAIINYTEGLKIKC 72 (337)
Q Consensus 1 ~~~~PlFm~~~p~~~~~~~~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p 72 (337)
+-.|||.|+.+- -...--.||+|++ ..|+.+-..+.--|-++-+.| ++......|-++.-.+-
T Consensus 17 fa~~~Fv~DG~~-----~~s~EGFLQ~lKf----~~~~~q~~i~~m~G~~AK~~G~~~~~~~~qtlYw~G~p~~R 82 (146)
T PF08010_consen 17 FAPHPFVFDGVQ-----FGSIEGFLQGLKF----KNPEMQRRIFKMSGKEAKFRGKKKNWARDQTLYWKGEPIHR 82 (146)
T ss_pred CCCCCeeecCee-----eehHHHHHHhccC----CCHHHHHHHHHHhhHHHHHcccccchhhhcceeECCCcccc
Confidence 357899998652 3344567999999 355566677777888887777 45566666766665544
No 402
>KOG2114|consensus
Probab=55.81 E-value=95 Score=33.08 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=33.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
...++..++.++..|+.+|++|+|++|+..|-+.|..
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3566788999999999999999999999999999975
No 403
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=55.67 E-value=97 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 92 LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 92 lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
.+..-+|+..++.++..+|.|....+.+.++|..+|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 456778999999999999999999999999999999999999988643
No 404
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=55.02 E-value=76 Score=22.76 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q psy5660 123 LFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~ 141 (337)
.-..|++++|+..|..++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 16 EDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3345666666666655553
No 405
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=53.75 E-value=97 Score=33.76 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHhcCC
Q psy5660 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV-------KLRAAQCLFHLKK 128 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka-------~~r~a~a~~~lg~ 128 (337)
.+.+|+.-|++.-. .|. .+--|...|.+|.++|+|.+-+..+.-|++.-|.++.. .||+-.+... +
T Consensus 534 ~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 606 (932)
T PRK13184 534 DFTQALSEFSYLHG-GVG----APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--H 606 (932)
T ss_pred HHHHHHHHHHHhcC-CCC----CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--H
Confidence 35556655554332 233 23568889999999999999999999999999988743 3444444333 4
Q ss_pred HHHHHHHHHHHHhhCCCCH
Q psy5660 129 FEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 129 ~~eA~~~~~~al~l~P~~~ 147 (337)
-..|....--++.+-|...
T Consensus 607 ~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 607 RREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 4567777777788888764
No 406
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.05 E-value=88 Score=30.99 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=37.5
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
.+++|+++.|.+.++ .-++...|-++|.+.+..|+++-|..+|+++-
T Consensus 328 Al~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 328 ALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 357888888877553 33467899999999999999999999999874
No 407
>KOG1463|consensus
Probab=53.01 E-value=72 Score=30.42 Aligned_cols=110 Identities=21% Similarity=0.202 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC-CchH-HHHHHHHHHHHHHHccCHHH--HHHHHHHHHhhCCC
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA-DNDV-NAQLYNNRAASNFFLKNYRS--CLTDCQIALKLKPD 111 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~-~~~~-~~~~~~nra~~~~~lg~~~~--Al~d~~~Al~l~P~ 111 (337)
.|.-+|..=..-|-.+...++|+.|..+|-+|++--.. +.+. ....+--+-.|-..++.-++ ++-....+++.+..
T Consensus 204 pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~ 283 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGR 283 (411)
T ss_pred CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCc
Confidence 45555665566677777778999999999999975221 1111 12222224455556665554 56666788999989
Q ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCC
Q psy5660 112 YPKVKLRAAQCLFH--LKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 112 ~~ka~~r~a~a~~~--lg~~~eA~~~~~~al~l~P~ 145 (337)
...|+...|.++.. +.+|..|+..|+.-|.-||=
T Consensus 284 ~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 284 DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 99999999999865 67999999999988876653
No 408
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=51.25 E-value=1.8e+02 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.7
Q ss_pred CChHHHHHHHHHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFN 51 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~ 51 (337)
.+++..+--+|-+|..+
T Consensus 112 ~~~eskVFy~KmKGDYy 128 (244)
T smart00101 112 SAAESKVFYLKMKGDYH 128 (244)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 409
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.18 E-value=1.4e+02 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 127 KKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 127 g~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
...++....+...++++|...++..
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 4566677777777777775544443
No 410
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.76 E-value=42 Score=26.92 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN 75 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~ 75 (337)
..-...|..+...|++.+|+.++.+||...|+-.
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 3445889999999999999999999999988733
No 411
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=50.66 E-value=36 Score=33.92 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHL 135 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~ 135 (337)
+|.--+..|+|+=|....++++-.+|.|-.|....|.++.++|--.|+.-|
T Consensus 458 la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~w 508 (655)
T COG2015 458 LAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATW 508 (655)
T ss_pred HHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchh
Confidence 444444555555555555555555555555555556666666655555443
No 412
>KOG2041|consensus
Probab=50.35 E-value=1.2e+02 Score=31.79 Aligned_cols=82 Identities=10% Similarity=0.077 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
+..-.++.+.|........|+.|.++|.+.-. .-|...|++++..|++-... ...-|.+.+.+=
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------------~e~~~ecly~le~f~~LE~l----a~~Lpe~s~llp 856 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------------TENQIECLYRLELFGELEVL----ARTLPEDSELLP 856 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------hHhHHHHHHHHHhhhhHHHH----HHhcCcccchHH
Confidence 34455677777777777778888888875322 23455566666555543222 222344544444
Q ss_pred HHHHHHHhcCCHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHL 135 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~ 135 (337)
.+|..+...|.-++|.++
T Consensus 857 ~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 857 VMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 445544444444444444
No 413
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=49.01 E-value=1e+02 Score=22.37 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=11.5
Q ss_pred hcCCHHHHHHHHHHHHhh
Q psy5660 125 HLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l 142 (337)
..|+|++|..+|..++..
T Consensus 18 ~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 336777777777766643
No 414
>KOG4459|consensus
Probab=47.98 E-value=62 Score=31.91 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHH----------------HH----HHHccCHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRA----------------AS----NFFLKNYRSCLTD 101 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra----------------~~----~~~lg~~~~Al~d 101 (337)
......|-..+..+++.+|+.+..+||..-..-.+..+.+..|.. .+ +-.+=+.-.|+.-
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHH
Confidence 445577888888899999999999988753211110111222111 00 0011123334455
Q ss_pred HHHHHhhCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 102 CQIALKLKPDY----------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 102 ~~~Al~l~P~~----------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
|.+.+.-.|.. -..|-.+=.|+.+.|++..|++.....+--+|++..++..+..-+
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq 177 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQ 177 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHH
Confidence 55544444433 256677788999999999999999999988999988877766554
No 415
>KOG3616|consensus
Probab=47.58 E-value=76 Score=33.49 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=65.4
Q ss_pred HHHHHHHHHHH-----HHH-HhCcHHHHHHHHHHHH--------ccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH--
Q psy5660 39 ELATTYKDEGN-----FNF-KCNKYRNAIINYTEGL--------KIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC-- 102 (337)
Q Consensus 39 e~A~~~k~~Gn-----~~~-k~g~y~~Ai~~Y~~ai--------~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~-- 102 (337)
+.|..|.+.|. .+| +.+.+++|+..|.++= ...|..++....+|...|.-.-+.|+|.+|...|
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 55666554443 233 3356788888887753 2345556667778887777777777777765443
Q ss_pred ----HHHHhh-----------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 103 ----QIALKL-----------------KPDY-PKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 103 ----~~Al~l-----------------~P~~-~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
.+||++ .|++ ...+.+.|.-+...|++.+|...|-++-
T Consensus 850 i~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 850 IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred ccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 233332 1222 2567788999999999999998876654
No 416
>KOG1464|consensus
Probab=47.21 E-value=55 Score=30.28 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
++....++|+..|.+.+++.+...+---.++-..-.+++++++|.+-+..|.+.|.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34457888999999999888775544444455556677888888888888888763
No 417
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=47.21 E-value=55 Score=18.87 Aligned_cols=26 Identities=19% Similarity=-0.056 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 98 CLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 98 Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
.+..+..++..+|+|..++..+-.+.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHH
Confidence 34556667777777766665444433
No 418
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.13 E-value=64 Score=24.35 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.0
Q ss_pred hHHHhhccccCCCCCC----hHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy5660 21 LVEGLQQLKYDPLENT----PEELATTYKDEGNFNFKCNKYRNAIINYT 65 (337)
Q Consensus 21 ~lealqaL~~dp~~~~----~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~ 65 (337)
.-+||+.++..|.++. -.+.|++|.+.|.-++..|++-.|..+.+
T Consensus 17 leeaL~~~k~~~~~~s~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~s 65 (90)
T COG1849 17 LEEALKEIKSRPGDRSAAEDFVDMAESYFEDAKYFLEKGDYVTAFAALS 65 (90)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 3467777777542222 33567777788888888888888777654
No 419
>KOG4056|consensus
Probab=45.62 E-value=42 Score=27.48 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL 81 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~ 81 (337)
.-.+.|..++.+|+++++..++..||.+.+.-..+...+
T Consensus 83 qqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 83 QQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 335789999999999999999999999988754444443
No 420
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=45.03 E-value=72 Score=26.52 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCc
Q psy5660 42 TTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADN 75 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~ 75 (337)
..-...|..+...| ++.+|+.++.+||.+.|+-.
T Consensus 91 l~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 91 LQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 34457899999999 89999999999999888633
No 421
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.83 E-value=2.8e+02 Score=28.95 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+...-+..+++..+...+...-.-.....+..|-+|+++..+|+.++|...|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344445778887766655553222234668899999999999999999999998754
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.74 E-value=1.7e+02 Score=26.25 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHHHH-----HhC-----cHHHHHHHHHHHHcc-----ccCCchHHHHHHHHHHHHHH-HccCHHHH
Q psy5660 35 NTPEELATTYKDEGNFNF-----KCN-----KYRNAIINYTEGLKI-----KCADNDVNAQLYNNRAASNF-FLKNYRSC 98 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~-----k~g-----~y~~Ai~~Y~~ai~~-----~p~~~~~~~~~~~nra~~~~-~lg~~~~A 98 (337)
.+++..+--+|-+|..+- ..| --+.|...|++|+.+ .|.+| +.-.+..|.+..++ .+|+..+|
T Consensus 110 ~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p-~rLgl~LN~svF~yei~~~~~~A 188 (236)
T PF00244_consen 110 TSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP-LRLGLALNYSVFYYEILNDPEKA 188 (236)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH-HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred cchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc-HHHHHHHHHHHHHHHHcCChHHH
Confidence 355666667777776552 111 136677777777764 33333 34455555665554 36777777
Q ss_pred HHHHHHHH
Q psy5660 99 LTDCQIAL 106 (337)
Q Consensus 99 l~d~~~Al 106 (337)
+..+++|+
T Consensus 189 ~~ia~~af 196 (236)
T PF00244_consen 189 IEIAKQAF 196 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 423
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.52 E-value=43 Score=18.56 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
-.+-.++.+.|++++|.+.+++..+
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhH
Confidence 3445666777777777777766543
No 424
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.17 E-value=1.9e+02 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=21.8
Q ss_pred ccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCHHHHH
Q psy5660 92 LKNYRSCLTDCQIALKLKPD----YPKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 92 lg~~~~Al~d~~~Al~l~P~----~~ka~~r~a~a~~~lg~~~eA~ 133 (337)
..+-.+|+..+.+||++.+. |+..+..+|.++..+|+++.|-
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34555555555555555322 3455555555555555555553
No 425
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=43.02 E-value=1.7e+02 Score=30.20 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
..+|.|.+..|...+|..++.....
T Consensus 504 vQLGLcAFR~G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 504 VQLGLCAFRAGLIKEAHQCLSELCS 528 (595)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 3467788888888888888776664
No 426
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=43.01 E-value=1.9e+02 Score=23.90 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 82 YNNRAASNFFLKNYRSCLTDCQI-ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 82 ~~nra~~~~~lg~~~~Al~d~~~-Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|.++|.-.+-..+-...++..-+ ..+-+..++.-++.+|.||..+|+..+|-+..++|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 45566555533333444443333 3334455778888889999999998888888777664
No 427
>KOG1497|consensus
Probab=42.87 E-value=3e+02 Score=26.15 Aligned_cols=105 Identities=16% Similarity=0.085 Sum_probs=69.0
Q ss_pred ChHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h
Q psy5660 36 TPEE-LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK--L 108 (337)
Q Consensus 36 ~~~e-~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~--l 108 (337)
.+++ .+......++.|-+.++|+.|..... ||..+.. +.+-....+..+|..|+..++-.+|.....++-- .
T Consensus 97 sfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 97 SFEEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 3443 45566688999999999999987763 5555431 2333567778889999999988888888877633 2
Q ss_pred CCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 109 KPDYPKVKLR----AAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 109 ~P~~~ka~~r----~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+..|..-... .|+++-..++|=||.+.|.+...
T Consensus 176 ~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 176 ESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433322 24455566777777777665553
No 428
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=42.74 E-value=56 Score=32.09 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=48.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
.....|++.++.+.|+.+--+.|.++|. ...-+..+|+|+..|.+|.+|...+--|.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~----~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPS----YFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999998 55777889999999999999987765553
No 429
>KOG0890|consensus
Probab=42.71 E-value=3.9e+02 Score=32.23 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=80.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-C---
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-P--- 110 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-P--- 110 (337)
.-....++.|.+.+..+-+.|+++.|-.+.-.|.+..+. .++.-+|.-....|+-..|+...+..+..+ |
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~------~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~ 1737 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP------EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLH 1737 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc------hHHHHHHHHHHhhccHHHHHHHHHHHHHhhccccc
Confidence 345688999999999999999999999999998887754 888999999999999999999999999764 2
Q ss_pred -------CCHH------HHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCC
Q psy5660 111 -------DYPK------VKLRAAQCLFHLKK--FEDCTHLCDELLKENPTD 146 (337)
Q Consensus 111 -------~~~k------a~~r~a~a~~~lg~--~~eA~~~~~~al~l~P~~ 146 (337)
.... |.+-.+.=..+.++ -.+-+..|+.+.++.|..
T Consensus 1738 ~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1738 TPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred CCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 2222 22222222233343 245567899999998854
No 430
>KOG0276|consensus
Probab=42.67 E-value=1.4e+02 Score=30.86 Aligned_cols=70 Identities=6% Similarity=-0.094 Sum_probs=51.5
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
-..++.+||++.++.. .|=.+.+++|+++.|.+.+.++ ++..-|-.+|.+.+..+++..|.+++.++
T Consensus 626 ~~g~~e~AL~~s~D~d--------~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 626 SQGMKEQALELSTDPD--------QRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hccchHhhhhcCCChh--------hhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3445666777766532 2445567899999987755443 56777888999999999999999999988
Q ss_pred Hhh
Q psy5660 140 LKE 142 (337)
Q Consensus 140 l~l 142 (337)
..+
T Consensus 693 ~d~ 695 (794)
T KOG0276|consen 693 RDL 695 (794)
T ss_pred cch
Confidence 654
No 431
>KOG2582|consensus
Probab=42.45 E-value=34 Score=32.81 Aligned_cols=103 Identities=18% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH----Hh----hCCC
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA----LK----LKPD 111 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A----l~----l~P~ 111 (337)
.....+..|+...+.++....+....+|+..--........++.-+.++.++.++|..++...+-- -+ ++|+
T Consensus 101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k 180 (422)
T KOG2582|consen 101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPK 180 (422)
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHH
Confidence 344566777777777776666666666665422111124466777778888889888776433211 11 2333
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 112 YP-KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 112 ~~-ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
+. ..+|..|..+..+++++.|+-+|..++-.
T Consensus 181 ~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 181 YFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 33 34456788899999999999999988854
No 432
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=40.38 E-value=29 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCeEEcCCCCCHHHhhc
Q psy5660 280 LSIYYQDPNGKPQRVPTTSTLGEVLT 305 (337)
Q Consensus 280 ~~~y~e~~~~~~~~v~~~~~l~~vl~ 305 (337)
|.||++++..+-+.|+..+|-++|++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~ 30 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQ 30 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHH
Confidence 78999999999999999999999986
No 433
>KOG1497|consensus
Probab=40.01 E-value=3.4e+02 Score=25.86 Aligned_cols=82 Identities=10% Similarity=0.034 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhCCCC
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD------Y--PKVKLRAAQCLFHLKKFEDCTHLCDELL--KENPTD 146 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~------~--~ka~~r~a~a~~~lg~~~eA~~~~~~al--~l~P~~ 146 (337)
..+.+...+|..|.+-++|+.|-.... ++.++.. + ...+.|.|++|+..++-.+|..+..++- ..+..|
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 356777788999999999998855432 3333321 1 2356789999999999999999988863 335577
Q ss_pred HHHHHHHHHHHHH
Q psy5660 147 STVIDLRTSCINK 159 (337)
Q Consensus 147 ~~~~~~l~~~~~~ 159 (337)
..++-.++-|..+
T Consensus 180 e~Lqie~kvc~AR 192 (399)
T KOG1497|consen 180 EQLQIEYKVCYAR 192 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666655544
No 434
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.94 E-value=1.2e+02 Score=25.70 Aligned_cols=70 Identities=4% Similarity=-0.021 Sum_probs=37.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy5660 123 LFHLKKFEDCTHLCDELLKENP----TDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERK 192 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P----~~~~~~~~l~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~l~~al~~rg 192 (337)
++..|+|+.++..|.++..+-- ....+...+..+.......+..-.+..............+...|.+.+
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~ 169 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELN 169 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Confidence 3567899999999988887732 234455555666554444333333332222222333344445554443
No 435
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=39.64 E-value=1.2e+02 Score=22.85 Aligned_cols=58 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCCHHHhhcCCceEeeCCceEEEEEeC
Q psy5660 253 VTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVA 323 (337)
Q Consensus 253 ~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~l~~vl~~~~~~~~~~~~~~~v~~k 323 (337)
..|.+++..+|+... -.++.+.|-+.+|-++-++-..-|..+++.-+ +++.++||..|
T Consensus 30 ~~L~~~V~~~f~~l~---------~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~----~~~~RlyI~~~ 87 (87)
T cd06402 30 EYLVEKVAAVFPSLR---------GKNFQLFWKDEEGDLVAFSSDEELVMALGSLN----DDTFRIYIKEK 87 (87)
T ss_pred HHHHHHHHHHccccC---------CCcEEEEEECCCCCEEeecCHHHHHHHHHcCC----CCcEEEEEEeC
Confidence 346677778884321 15899999999999999999999999998765 57889998754
No 436
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=39.61 E-value=3.4e+02 Score=26.45 Aligned_cols=101 Identities=14% Similarity=-0.008 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKN--------------YRSCLTDCQIA 105 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~--------------~~~Al~d~~~A 105 (337)
...+..|..+|-.|+|+-|...|..+..---+|. ...+.++--.|.|.+..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 4566789999999999999999998877433332 1244455556666666552 33444445442
Q ss_pred ----HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 106 ----LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 106 ----l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.....-..++.+..+.++...|.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111234567777788888899988887776666654
No 437
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=38.78 E-value=97 Score=28.57 Aligned_cols=93 Identities=15% Similarity=0.030 Sum_probs=59.9
Q ss_pred HHHhCcHHHHHHHHHHHHccccCCch-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy5660 51 NFKCNKYRNAIINYTEGLKIKCADND-------VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------PKVKL 117 (337)
Q Consensus 51 ~~k~g~y~~Ai~~Y~~ai~~~p~~~~-------~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------~ka~~ 117 (337)
++..++.-.|+..|..-+.-.|.+-- -...+|.....|+ .--....|...+++||-+.-.. .-+.+
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 34445556677778777777776321 0112222222222 1234567888888888764321 24568
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
|.+.+++.+.+|+.|..+|.+|+.+--
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998743
No 438
>KOG2561|consensus
Probab=38.32 E-value=4.1e+02 Score=26.40 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--C-----CchHHHHHHHHHHHHHHHccCHH------HHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--A-----DNDVNAQLYNNRAASNFFLKNYR------SCLTDCQIA 105 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~-----~~~~~~~~~~nra~~~~~lg~~~------~Al~d~~~A 105 (337)
-.+..+.+.|..+++.+.|.+|+.+.-.|=+.=+ + ..+..+.+-.-+-.||+.++|.. .-+.-|++.
T Consensus 161 mmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 161 MMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 3466788999999999999999998877755311 1 00112333333456788877632 122233333
Q ss_pred Hh------------hC-CCC-HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 106 LK------------LK-PDY-PKVK-----LRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 106 l~------------l~-P~~-~ka~-----~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+. +. +.. -+|+ ..-|...+..|+-++|.++++.+..
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 22 21 111 1333 3458889999999999999998864
No 439
>KOG0739|consensus
Probab=37.93 E-value=1.6e+02 Score=27.83 Aligned_cols=44 Identities=25% Similarity=0.177 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKL-RAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~-r~a~a~~~lg~~~eA~~~~~~ 138 (337)
|..|++++..+|+...++.++-- -+++|...+.+-++-..+++.
T Consensus 33 Y~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~ 77 (439)
T KOG0739|consen 33 YQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKE 77 (439)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555554444332 235565555555554444443
No 440
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.61 E-value=75 Score=17.80 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|-.+-.++...|++++|.+.+++..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455677888888888888887664
No 441
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=36.68 E-value=98 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
..+|..++..|++++|...+-+|+.+.|+-..+...+.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q~ 105 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 467888888999999999999999998886666665544
No 442
>KOG1464|consensus
Probab=35.99 E-value=1.2e+02 Score=28.05 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
-.++|+.-...|+.++|++-+..|++.+..
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 356777788889999999999999987764
No 443
>KOG4563|consensus
Probab=35.75 E-value=1.1e+02 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC 72 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p 72 (337)
.+..+..+...|+.++..++|..|+..|..|..+..
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ 72 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSD 72 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999998754
No 444
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=35.71 E-value=91 Score=18.41 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhh
Q psy5660 128 KFEDCTHLCDELLKE 142 (337)
Q Consensus 128 ~~~eA~~~~~~al~l 142 (337)
+++.|..+++++-+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356677777666543
No 445
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.66 E-value=2.1e+02 Score=23.82 Aligned_cols=71 Identities=14% Similarity=-0.078 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc-cc--CC-chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI-KC--AD-NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-~p--~~-~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
+..........+|..++.|+...|.+....+-.- .- .. |--......++|..++..|+|.+|...+..|+.
T Consensus 71 ~~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 71 PTPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp --HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4567778889999999999999999988765321 00 00 101234456788889999999999888887763
No 446
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=35.52 E-value=91 Score=17.96 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHh
Q psy5660 115 VKLRAAQCLFHL----KKFEDCTHLCDELLK 141 (337)
Q Consensus 115 a~~r~a~a~~~l----g~~~eA~~~~~~al~ 141 (337)
+.+.+|.++..= .+...|..+++++-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 455555555431 256666666666554
No 447
>KOG2758|consensus
Probab=33.70 E-value=2.4e+02 Score=26.88 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHH--HHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYT--EGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~--~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
+..+.+...+...|.-|+|..|-.+.- +++..++ ++...+.+|..+|. -.-+.||+.|+++..+.-+.
T Consensus 127 e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~-d~n~lsalwGKlAS-EIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 127 ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDP-DRNYLSALWGKLAS-EILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCc-chhhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHH
Confidence 556666678888899999988876633 3333333 23235566665554 44578999999999886654
No 448
>PF13041 PPR_2: PPR repeat family
Probab=31.66 E-value=1.4e+02 Score=18.99 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.|-.+-.++.+.|++++|.+.+++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444455556666666666666665543
No 449
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=31.22 E-value=77 Score=35.57 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFL 92 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~l 92 (337)
......|-.|+.++..|+|.+|+..|++|+...- +|.--.+.++-..+.|.+-+
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999998743 33323556666666665543
No 450
>KOG2997|consensus
Probab=30.59 E-value=1.2e+02 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA 73 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~ 73 (337)
....+.|..+...|-..-+.|..-+|+.+|+.|+++.|+
T Consensus 13 d~~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 13 DPLAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred chHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 345688999999999999999999999999999999887
No 451
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]
Probab=30.38 E-value=77 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=29.8
Q ss_pred CCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCC
Q psy5660 253 VTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTST 299 (337)
Q Consensus 253 ~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~ 299 (337)
+-+-..|.++...|. ++-+.+.||+.|..+.+++|++.+-
T Consensus 63 DI~H~~LL~~lDSpl-------nk~~~L~vYIHT~~~~vI~v~p~~R 102 (223)
T COG1756 63 DIVHQCLLTLLDSPL-------NKEGKLRVYIHTRNDYVIEVNPETR 102 (223)
T ss_pred chHHHHHHHHhhccc-------ccccceeEEEEecCCEEEEECCCcc
Confidence 445566666666553 4567899999999999988888654
No 452
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.62 E-value=1.9e+02 Score=19.98 Aligned_cols=57 Identities=18% Similarity=-0.063 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHH--HHHHHHccCHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR--AASNFFLKNYRSCLTD 101 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nr--a~~~~~lg~~~~Al~d 101 (337)
...|-.+|..|+|=+|=+.....-...+.+....-..+.+. |..+.+.||.+.|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 35677889999999999888888876554433222333333 4455567888887654
No 453
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.50 E-value=1.1e+02 Score=26.70 Aligned_cols=63 Identities=14% Similarity=0.046 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCC------H-HHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDY------P-KVKL-RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~------~-ka~~-r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
..+|+..++..-+--|.. . +..- ....++++.|.+++|.+.+++... +|++...+..+..+-+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 678888777655444331 1 1222 234558899999999999999999 8888776655555543
No 454
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.15 E-value=1.9e+02 Score=24.66 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP 110 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P 110 (337)
-...++...+.+...|+ +.+|.+.+.++..+|+.++|.....++..+-|
T Consensus 127 l~~~~~~a~~~l~~~P~-----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD-----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455556666666674 58899999999999999999999999999999
No 455
>KOG3807|consensus
Probab=29.04 E-value=5.3e+02 Score=24.80 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLRAAQCLFHLKKFEDCTHLCDELLKE-NPTDS 147 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r~a~a~~~lg~~~eA~~~~~~al~l-~P~~~ 147 (337)
+-..+|.|-.++|+.++|+.-++-..+--|-- ...+-++-.+++++.-|.+....+-+.-.+ .|.+.
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA 346 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA 346 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence 33456999999999999999998877766622 134446666777776666555554444333 24443
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=28.93 E-value=3.8e+02 Score=24.04 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHccccC-CchHHHHHHHHHHHHHH---------HccCHHHHHHHHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKY-RNAIINYTEGLKIKCA-DNDVNAQLYNNRAASNF---------FLKNYRSCLTDCQI 104 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y-~~Ai~~Y~~ai~~~p~-~~~~~~~~~~nra~~~~---------~lg~~~~Al~d~~~ 104 (337)
.|--.|+...+-+...++.|+- +-+...-...|..+.+ ...+.+-+|--.|..++ ..++...|+..+++
T Consensus 124 ~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~r 203 (230)
T PHA02537 124 LANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQR 203 (230)
T ss_pred chHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHH
Confidence 4556677888888888888872 1111111111111122 22357777777787774 34678899999999
Q ss_pred HHhhCCCC
Q psy5660 105 ALKLKPDY 112 (337)
Q Consensus 105 Al~l~P~~ 112 (337)
|++++|+-
T Consensus 204 A~~l~~k~ 211 (230)
T PHA02537 204 AFQLNDKC 211 (230)
T ss_pred HHHhCCCC
Confidence 99999974
No 457
>KOG3616|consensus
Probab=28.83 E-value=3.1e+02 Score=29.25 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=8.2
Q ss_pred HHHHHHhCcHHHHHHHHH
Q psy5660 48 GNFNFKCNKYRNAIINYT 65 (337)
Q Consensus 48 Gn~~~k~g~y~~Ai~~Y~ 65 (337)
|..+-..|+|+.|+.+|-
T Consensus 713 g~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred hHHHHHHHhHHHHHHHHH
Confidence 333334445555554443
No 458
>KOG4014|consensus
Probab=28.70 E-value=4e+02 Score=23.35 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHh-----Cc--HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKC-----NK--YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~-----g~--y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~ 91 (337)
....+....|-.+..- ++ ..+|.++|++|.++.-. .+.++++.-|+.
T Consensus 103 n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~------~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 103 NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG------EACFLLSTMYMG 156 (248)
T ss_pred CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc------hHHHHHHHHHhc
Confidence 3445566666665532 23 68899999999988654 445555555543
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.54 E-value=1.3e+02 Score=20.78 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.5
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
++....+..-+...-..+..+|++++|.++++....
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333334455566667778888899988888776653
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=27.88 E-value=4.5e+02 Score=25.33 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHH--HhcCCHHHHHHHHHHHHhh
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP--KVKLRAAQCL--FHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~--ka~~r~a~a~--~~lg~~~eA~~~~~~al~l 142 (337)
.+.....++...+..++|..|...+...+..-|.+. ..+..++.+| ...-++++|.+.++..+..
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445666788888899999999999999888533333 3555555554 4577899999999988865
No 461
>KOG0276|consensus
Probab=27.80 E-value=4.3e+02 Score=27.48 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
...++..|+...+.+++..|.+|+.+|-..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 346777788888888888888888777654
No 462
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis. They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.
Probab=27.15 E-value=96 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=27.5
Q ss_pred ccCceEEEEEcCCCCeEEcCCCCCH-----------HHhhcCCceEee-CCceEEEEE
Q psy5660 276 VPGRLSIYYQDPNGKPQRVPTTSTL-----------GEVLTNPKYVIQ-AGTPGFSIL 321 (337)
Q Consensus 276 ~~~~~~~y~e~~~~~~~~v~~~~~l-----------~~vl~~~~~~~~-~~~~~~~v~ 321 (337)
....++||+.|.+|.++.|++.+.+ .++|...++.-. +|.|-+-|+
T Consensus 58 k~G~L~VYIhT~~~~lI~V~p~~RiPR~y~rF~gLm~qLL~~~~I~~~~~~~~Llkv~ 115 (202)
T PF03587_consen 58 KAGKLQVYIHTIDNVLIEVSPQTRIPRNYNRFVGLMEQLLKKGKIPAEESGEPLLKVI 115 (202)
T ss_dssp HTT-EEEEEEETTSEEEEE-TT----SSHHHHHHHHHHHHHHSEEEETTSTCEEEEEE
T ss_pred hCCcEEEEEEecCCEEEEECCCCcCCcCHHHHHHHHHHHHhcCcccCCCCCCeeEEEE
Confidence 3467999999999999999998764 455544443332 245555554
No 463
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=26.45 E-value=2.4e+02 Score=23.07 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 123 LFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 123 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
++..-+.+.|.+.|+.+++..|++-.+.-.+
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~ 116 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAM 116 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHH
Confidence 3344466888999999999999987765433
No 464
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.29 E-value=2.3e+02 Score=22.54 Aligned_cols=46 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 59 ~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
.+...|.......-... .+..|..-|..+...|++.+|...++.+|
T Consensus 81 ~~~~if~~l~~~~IG~~--~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTK--LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTT--BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHH--HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 465
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=26.06 E-value=2.7e+02 Score=20.43 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNE 167 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~ 167 (337)
.+..++=|+..+.--|.-+|++..+.........++++..+.+
T Consensus 7 ~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l~~~Y 49 (78)
T PF12652_consen 7 EIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQLKKEY 49 (78)
T ss_pred HHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566666677778999999888777765544444333
No 466
>KOG0889|consensus
Probab=26.00 E-value=6e+02 Score=32.07 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHhhC
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL----K----KFEDCTHLCDELLKEN 143 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l----g----~~~eA~~~~~~al~l~ 143 (337)
..+..+.-+|.-+.++|.+++|-..+..|++++-.-.|+|+..|.-+... + --..|+.+|-+|....
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 47788888999999999999999999999999988899999888766542 1 2345666666666554
No 467
>KOG2041|consensus
Probab=25.92 E-value=3.9e+02 Score=28.37 Aligned_cols=53 Identities=11% Similarity=0.212 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 74 ~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
+.+....++.|+|..+..+..|.+|..+|.+.-. .-+.+.|++.+..|++-..
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV 843 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH
Confidence 3445778899999999999999999888876422 1244566666666665443
No 468
>PRK04171 ribosome biogenesis protein; Provisional
Probab=25.69 E-value=93 Score=27.73 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCC
Q psy5660 257 SMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTST 299 (337)
Q Consensus 257 ~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~ 299 (337)
.-|-++++.|+ .....++||+.|.++.++.|++.+.
T Consensus 66 q~LL~lldSpL-------Nk~G~L~VYIhT~~~~lI~V~P~~R 101 (222)
T PRK04171 66 ISLLVALDSPL-------NKEGKLRVYIHTRDDKVIYVNPETR 101 (222)
T ss_pred HHHHHHhcChh-------hhcCCeEEEEEecCCEEEEECCCCc
Confidence 34555665564 3447899999999998888887654
No 469
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.14 E-value=1.4e+02 Score=16.78 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|-.+..++...|+++.|.+.++...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445666667777777776665543
No 470
>KOG3783|consensus
Probab=24.82 E-value=7.5e+02 Score=25.17 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCC
Q psy5660 74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---KPD----YPKVKLRAAQCLFHLKK-FEDCTHLCDELLKENPT 145 (337)
Q Consensus 74 ~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---~P~----~~ka~~r~a~a~~~lg~-~~eA~~~~~~al~l~P~ 145 (337)
|.+....-+.-.|.|+..||+-..|-..+..+++- ... .+-|+|.+|..+..++. ..+|..++.+|-....+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 44456666777899999999999999988888732 111 35799999999999998 99999999999876533
No 471
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=24.62 E-value=1.5e+02 Score=23.18 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
..|..+..+|..+++.|+.+.|--+|-+.+.+
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56888899999999999999999999888765
No 472
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=24.35 E-value=77 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCeEEcCCCCCHHHhhc
Q psy5660 280 LSIYYQDPNGKPQRVPTTSTLGEVLT 305 (337)
Q Consensus 280 ~~~y~e~~~~~~~~v~~~~~l~~vl~ 305 (337)
+.||+.+.....+.|-+++|++++|.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~ 27 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLA 27 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHH
Confidence 35677777788999999999999996
No 473
>KOG2422|consensus
Probab=23.94 E-value=8.2e+02 Score=25.29 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc-------ccCCchHHHHHHHHHHH---------HHHHccCHHHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI-------KCADNDVNAQLYNNRAA---------SNFFLKNYRSCLTD 101 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-------~p~~~~~~~~~~~nra~---------~~~~lg~~~~Al~d 101 (337)
...|..++.+|..-...+-.+.|+-.+.+|+.- +|.-+ -..+.||.. ...+.|-++.|.+.
T Consensus 288 Lqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~---y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 288 LQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP---YIYPENRQFYLALFRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc---ccchhhHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 345555555555555555566666666666653 12111 112223221 12256899999999
Q ss_pred HHHHHhhCCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q psy5660 102 CQIALKLKPD-YPKVKLRAAQCL-FHLKKFEDCTHLCDEL 139 (337)
Q Consensus 102 ~~~Al~l~P~-~~ka~~r~a~a~-~~lg~~~eA~~~~~~a 139 (337)
|+..++++|. ++-+....-..| +...+|+--++.++..
T Consensus 365 cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 365 CKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999998 776666555554 4556777766666655
No 474
>PRK11827 hypothetical protein; Provisional
Probab=23.71 E-value=21 Score=24.88 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=11.9
Q ss_pred CCceEeeCCceEEEE
Q psy5660 306 NPKYVIQAGTPGFSI 320 (337)
Q Consensus 306 ~~~~~~~~~~~~~~v 320 (337)
.--|+|.||+|++.+
T Consensus 33 ~laYPI~dgIPVlL~ 47 (60)
T PRK11827 33 NLAFPLRDGIPVLLE 47 (60)
T ss_pred CeeccccCCccccCH
Confidence 346999999999764
No 475
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.71 E-value=1.3e+02 Score=29.18 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHhh
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK------------KFEDCTHLCDELLKE 142 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg------------~~~eA~~~~~~al~l 142 (337)
...|+.++++|.. -..+..|...|.+++.+| -|.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555543 233444555555554444 356666666666554
No 476
>KOG4151|consensus
Probab=23.47 E-value=1e+02 Score=32.49 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHH--HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 39 ELATTYKDEGNFN--FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 39 e~A~~~k~~Gn~~--~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
..+..+.++.-.+ ...++|..++.--+-|+...|. ...+..-||.||.-++.++-|+.+..-....+|.++.+.
T Consensus 89 ~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~----i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 89 VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPR----ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccch----HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 4555555665554 4557899999999999998887 667788899999999999999999888899999997665
Q ss_pred HHHHHHH
Q psy5660 117 LRAAQCL 123 (337)
Q Consensus 117 ~r~a~a~ 123 (337)
-......
T Consensus 165 eif~elk 171 (748)
T KOG4151|consen 165 EIFEELK 171 (748)
T ss_pred HHHHHHH
Confidence 5444433
No 477
>KOG1914|consensus
Probab=23.40 E-value=4.4e+02 Score=26.97 Aligned_cols=72 Identities=7% Similarity=0.005 Sum_probs=52.4
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
-+.+..+| ....++...-..+-.+ .++++...|.+.+..-|. .+.+|.--...-++-++|+.....+.+
T Consensus 10 ~~rie~nP------~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENP------YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCC------ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34455555 5666777666666554 889999999999988887 446776666667778888888888888
Q ss_pred HHh
Q psy5660 105 ALK 107 (337)
Q Consensus 105 Al~ 107 (337)
+|.
T Consensus 79 CLv 81 (656)
T KOG1914|consen 79 CLV 81 (656)
T ss_pred HHH
Confidence 764
No 478
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.27 E-value=5.4e+02 Score=22.95 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+..+|+.....|+|++++.+.+++...+|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 344566666666666666666666666543
No 479
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=22.80 E-value=1.9e+02 Score=17.44 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
++.|-..+++.+..-| +++.|.+.
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHH
Confidence 3444444444444443 24444433
No 480
>PF13763 DUF4167: Domain of unknown function (DUF4167)
Probab=21.80 E-value=2.7e+02 Score=20.61 Aligned_cols=33 Identities=9% Similarity=-0.012 Sum_probs=27.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEG 67 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~a 67 (337)
+++..+.+.|..++..+...|+--.|..+++-|
T Consensus 33 GnA~ql~EKY~~LArDA~ssGDrV~aEny~QHA 65 (80)
T PF13763_consen 33 GNAQQLIEKYNQLARDAQSSGDRVLAENYLQHA 65 (80)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 688899999999999999999977777666543
No 481
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=21.68 E-value=4.7e+02 Score=21.68 Aligned_cols=61 Identities=21% Similarity=0.030 Sum_probs=35.3
Q ss_pred HHHHHHHHH-HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 44 YKDEGNFNF-KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 44 ~k~~Gn~~~-k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
|.+.+-... ++|+-++--+.|.....- .+..+.+...+|.+|-++|+-++|-+...+|-+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn----~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN----EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc----cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344443333 334444444444444421 1126688889999999999999999988888653
No 482
>KOG3540|consensus
Probab=20.90 E-value=8.6e+02 Score=24.44 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLF--HLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 93 g~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~--~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
.+-+.|+..|..||+.+|..+.-.+..-+.|. ..++-.-.+..|+..+..||.-.
T Consensus 326 drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34567899999999999887754444433333 44555667888999999988743
No 483
>KOG3540|consensus
Probab=20.90 E-value=8.6e+02 Score=24.44 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCH
Q psy5660 127 KKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 127 g~~~eA~~~~~~al~l~P~~~ 147 (337)
.+-..|+..|..||+-+|.-+
T Consensus 326 drrR~Ale~ylaALqa~pprp 346 (615)
T KOG3540|consen 326 DRRRDALENYLAALQADPPRP 346 (615)
T ss_pred hHHHHHHHHHHHHHhcCCCCh
Confidence 456778888888888877654
No 484
>KOG1914|consensus
Probab=20.61 E-value=5.1e+02 Score=26.51 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 65 TEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 65 ~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
++-|+.+|.| ...|+-+-.-+ +..-++++..++++-+..-|..+.+|.......++.++|+.-...+.+||.-
T Consensus 10 ~~rie~nP~d----i~sw~~lire~-qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYD----IDSWSQLIREA-QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCcc----HHHHHHHHHHH-ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6677888874 35555443333 3348899999999999999999999988888888999999999999888864
No 485
>KOG3995|consensus
Probab=20.40 E-value=44 Score=29.40 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=40.9
Q ss_pred ccccccccCCcCCHHHHHHHhcC-CCCCCCCCCCccc-CceEEEEEcCCCCeEEcCCCCCHHHhh
Q psy5660 242 ITDFVQEFHEDVTFDSMLEEMFS-ESPGWDEDRKYVP-GRLSIYYQDPNGKPQRVPTTSTLGEVL 304 (337)
Q Consensus 242 q~Dfi~~~~e~~~~~~~l~~~f~-~~~~wd~~~~y~~-~~~~~y~e~~~~~~~~v~~~~~l~~vl 304 (337)
+-||.--++-...+.++|.+||= .| .+.+.|+. ..=++||+-+...+.||-.+..-++|.
T Consensus 17 ~g~f~PPVcNkCmh~~qlkVm~VGGP---N~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDiv 78 (279)
T KOG3995|consen 17 RGSFQPPVCNKCMHQEQLKVMFVGGP---NTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVV 78 (279)
T ss_pred ccccCCccchhhccccCeEEEEecCC---CcccccccCCcchhheeecCceEEeeeccCcceeeE
Confidence 34455555556677889999994 34 34566876 457888898888888887766655544
No 486
>KOG3073|consensus
Probab=20.16 E-value=1.6e+02 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCC
Q psy5660 253 VTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTS 298 (337)
Q Consensus 253 ~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~ 298 (337)
+-+-+.|-+++..|.. +...+.||+.|..+-|+.|++.+
T Consensus 75 DitHQ~Ll~LlDSPlN-------kAgkLqVyi~T~knvLiEvnp~~ 113 (236)
T KOG3073|consen 75 DITHQCLLMLLDSPLN-------KAGKLQVYIHTAKNVLIEVNPQV 113 (236)
T ss_pred cHHHHHHHHHhcCccc-------ccceeEEEEEccCceEEEecccc
Confidence 4556778888877642 45789999999998888777754
Done!