Query psy5660
Match_columns 337
No_of_seqs 350 out of 2715
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 23:23:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.9 6.6E-22 2.2E-26 159.5 16.5 114 39-156 11-124 (126)
2 3rkv_A Putative peptidylprolyl 99.8 7.4E-20 2.5E-24 152.6 15.6 125 36-160 6-145 (162)
3 2hr2_A Hypothetical protein; a 99.8 4.7E-20 1.6E-24 154.3 12.2 121 39-159 9-148 (159)
4 4gcn_A Protein STI-1; structur 99.8 6.7E-19 2.3E-23 141.8 14.2 109 38-151 5-120 (127)
5 3upv_A Heat shock protein STI1 99.8 5.6E-18 1.9E-22 134.8 16.0 116 39-158 2-123 (126)
6 3gyz_A Chaperone protein IPGC; 99.8 1.5E-17 5E-22 138.7 16.1 111 27-147 28-138 (151)
7 3sz7_A HSC70 cochaperone (SGT) 99.7 3.4E-17 1.1E-21 136.6 16.1 112 35-150 5-116 (164)
8 2vgx_A Chaperone SYCD; alterna 99.7 3.4E-17 1.2E-21 135.4 15.2 126 24-159 10-135 (148)
9 2xcb_A PCRH, regulatory protei 99.7 5.9E-17 2E-21 132.2 15.7 125 25-159 8-132 (142)
10 4ga2_A E3 SUMO-protein ligase 99.7 2.8E-17 9.7E-22 136.0 13.3 116 39-158 29-145 (150)
11 1p5q_A FKBP52, FK506-binding p 99.7 2.9E-16 1E-20 147.1 19.3 123 39-161 145-278 (336)
12 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.3E-16 7.8E-21 154.1 18.5 123 39-161 266-399 (457)
13 2fbn_A 70 kDa peptidylprolyl i 99.7 1.2E-15 3.9E-20 131.2 18.5 124 37-160 34-169 (198)
14 1ihg_A Cyclophilin 40; ppiase 99.7 1.1E-15 3.7E-20 145.4 18.5 124 37-160 219-354 (370)
15 4gyw_A UDP-N-acetylglucosamine 99.7 1.4E-15 4.9E-20 156.4 20.0 116 39-158 7-122 (723)
16 3q49_B STIP1 homology and U bo 99.7 7.9E-16 2.7E-20 123.2 14.2 117 39-159 7-128 (137)
17 4gyw_A UDP-N-acetylglucosamine 99.6 3.9E-15 1.3E-19 153.1 17.7 126 24-159 32-157 (723)
18 1elw_A TPR1-domain of HOP; HOP 99.6 8.4E-15 2.9E-19 112.8 15.5 114 40-157 3-116 (118)
19 3urz_A Uncharacterized protein 99.6 1.2E-14 4.2E-19 126.3 18.1 115 40-158 3-133 (208)
20 2pl2_A Hypothetical conserved 99.6 8.3E-15 2.8E-19 128.2 17.0 123 26-159 30-163 (217)
21 2h6f_A Protein farnesyltransfe 99.6 3.7E-15 1.3E-19 142.4 15.6 125 25-159 87-212 (382)
22 2pl2_A Hypothetical conserved 99.6 1E-14 3.4E-19 127.7 17.2 116 40-159 4-130 (217)
23 4ga2_A E3 SUMO-protein ligase 99.6 2.1E-15 7.1E-20 124.6 12.0 109 47-159 3-111 (150)
24 2h6f_A Protein farnesyltransfe 99.6 2.3E-15 7.8E-20 143.9 13.5 124 26-159 122-246 (382)
25 1a17_A Serine/threonine protei 99.6 6.8E-14 2.3E-18 114.9 20.5 118 36-157 8-125 (166)
26 2dba_A Smooth muscle cell asso 99.6 1.9E-14 6.4E-19 116.0 16.8 118 39-157 26-143 (148)
27 2if4_A ATFKBP42; FKBP-like, al 99.6 7.1E-16 2.4E-20 144.7 9.5 121 38-158 176-309 (338)
28 1hxi_A PEX5, peroxisome target 99.6 1.6E-15 5.6E-20 120.8 9.8 103 42-148 18-120 (121)
29 2lni_A Stress-induced-phosphop 99.6 1.3E-14 4.4E-19 114.6 13.9 119 36-158 11-129 (133)
30 3vtx_A MAMA; tetratricopeptide 99.6 8.9E-14 3E-18 117.2 19.3 113 40-156 4-116 (184)
31 2vyi_A SGTA protein; chaperone 99.6 8.3E-14 2.8E-18 109.0 17.7 119 36-158 7-125 (131)
32 4i17_A Hypothetical protein; T 99.6 5.1E-14 1.8E-18 122.9 17.9 105 41-149 7-112 (228)
33 1elr_A TPR2A-domain of HOP; HO 99.6 4.2E-14 1.4E-18 110.9 15.0 116 39-159 2-124 (131)
34 2xev_A YBGF; tetratricopeptide 99.6 3.8E-14 1.3E-18 112.1 14.4 117 42-159 3-122 (129)
35 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-13 7.4E-18 114.8 18.2 126 24-159 28-153 (184)
36 2c2l_A CHIP, carboxy terminus 99.6 4.6E-14 1.6E-18 128.7 14.8 103 40-146 3-105 (281)
37 3urz_A Uncharacterized protein 99.5 7.8E-14 2.7E-18 121.1 14.8 111 26-146 29-190 (208)
38 1na0_A Designed protein CTPR3; 99.5 3.8E-13 1.3E-17 104.3 16.5 116 38-157 6-121 (125)
39 1zu2_A Mitochondrial import re 99.5 2.4E-14 8.1E-19 119.4 9.8 101 52-156 13-134 (158)
40 2e2e_A Formate-dependent nitri 99.5 2.3E-13 7.9E-18 114.1 15.6 123 24-156 33-158 (177)
41 3k9i_A BH0479 protein; putativ 99.5 5.9E-14 2E-18 110.4 9.9 97 53-153 2-101 (117)
42 4i17_A Hypothetical protein; T 99.5 8E-13 2.7E-17 115.3 17.9 114 42-159 43-165 (228)
43 4gco_A Protein STI-1; structur 99.5 4.8E-13 1.6E-17 107.2 13.4 90 66-159 4-93 (126)
44 1wao_1 Serine/threonine protei 99.5 7.1E-14 2.4E-18 137.2 10.2 115 39-157 4-118 (477)
45 2kck_A TPR repeat; tetratricop 99.5 1.2E-13 4.3E-18 105.3 9.2 103 41-147 6-111 (112)
46 3uq3_A Heat shock protein STI1 99.5 5.2E-13 1.8E-17 117.0 14.0 114 39-156 137-256 (258)
47 3ieg_A DNAJ homolog subfamily 99.5 2.2E-12 7.5E-17 118.3 17.7 118 44-161 237-354 (359)
48 3gyz_A Chaperone protein IPGC; 99.5 4.6E-13 1.6E-17 111.2 11.7 97 59-159 20-116 (151)
49 4abn_A Tetratricopeptide repea 99.4 8.3E-13 2.9E-17 129.2 14.9 116 39-159 135-270 (474)
50 3uq3_A Heat shock protein STI1 99.4 1.3E-11 4.4E-16 108.0 20.6 122 38-159 76-219 (258)
51 1xnf_A Lipoprotein NLPI; TPR, 99.4 9.7E-12 3.3E-16 110.2 19.9 116 35-154 37-152 (275)
52 2vsy_A XCC0866; transferase, g 99.4 2.5E-12 8.5E-17 128.1 17.7 126 25-160 13-138 (568)
53 3as5_A MAMA; tetratricopeptide 99.4 6.7E-12 2.3E-16 103.9 17.6 113 41-157 42-154 (186)
54 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.5E-16 108.0 18.9 116 40-159 56-171 (243)
55 1hh8_A P67PHOX, NCF-2, neutrop 99.4 4.7E-12 1.6E-16 108.7 16.5 114 39-159 4-133 (213)
56 3u4t_A TPR repeat-containing p 99.4 1.8E-12 6.2E-17 115.2 14.0 125 27-158 29-154 (272)
57 3as5_A MAMA; tetratricopeptide 99.4 1.7E-11 5.8E-16 101.4 18.9 118 38-159 5-122 (186)
58 2l6j_A TPR repeat-containing p 99.4 1.3E-13 4.5E-18 105.8 5.1 95 40-138 3-103 (111)
59 1hh8_A P67PHOX, NCF-2, neutrop 99.4 2.7E-12 9.2E-17 110.3 13.8 103 40-146 36-154 (213)
60 4abn_A Tetratricopeptide repea 99.4 2.2E-12 7.7E-17 126.2 14.8 125 26-161 162-306 (474)
61 3qky_A Outer membrane assembly 99.4 9E-12 3.1E-16 111.1 17.0 118 40-158 51-196 (261)
62 1w3b_A UDP-N-acetylglucosamine 99.4 4.8E-12 1.6E-16 118.9 16.0 115 40-158 202-316 (388)
63 2pzi_A Probable serine/threoni 99.4 6.6E-13 2.3E-17 135.8 10.6 116 39-159 431-546 (681)
64 2fo7_A Synthetic consensus TPR 99.4 2.1E-11 7.2E-16 95.2 16.8 114 42-159 2-115 (136)
65 2pzi_A Probable serine/threoni 99.4 3.5E-13 1.2E-17 137.8 7.8 114 39-157 465-578 (681)
66 2y4t_A DNAJ homolog subfamily 99.4 1.9E-11 6.7E-16 116.4 19.5 122 23-154 14-138 (450)
67 1w3b_A UDP-N-acetylglucosamine 99.4 8.7E-12 3E-16 117.1 16.8 114 41-158 169-282 (388)
68 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.8E-11 6.3E-16 107.1 17.8 112 41-153 4-136 (225)
69 4eqf_A PEX5-related protein; a 99.4 1E-11 3.4E-16 115.6 17.0 82 78-159 212-293 (365)
70 3qky_A Outer membrane assembly 99.4 1.4E-11 4.7E-16 109.8 17.1 114 39-153 13-137 (261)
71 3ieg_A DNAJ homolog subfamily 99.4 1.8E-11 6E-16 112.2 18.1 111 40-154 2-115 (359)
72 2y4t_A DNAJ homolog subfamily 99.4 1.4E-11 4.7E-16 117.5 18.0 116 44-159 260-375 (450)
73 1fch_A Peroxisomal targeting s 99.4 3.7E-11 1.3E-15 111.2 20.5 81 79-159 217-297 (368)
74 4eqf_A PEX5-related protein; a 99.4 1.2E-11 4E-16 115.1 17.1 115 41-159 99-259 (365)
75 2vgx_A Chaperone SYCD; alterna 99.4 9.8E-12 3.4E-16 102.2 14.4 96 60-159 6-101 (148)
76 2q7f_A YRRB protein; TPR, prot 99.4 8.3E-12 2.8E-16 108.6 14.4 121 35-159 17-137 (243)
77 2ho1_A Type 4 fimbrial biogene 99.4 2.2E-11 7.4E-16 107.0 17.3 121 35-159 31-153 (252)
78 2vq2_A PILW, putative fimbrial 99.4 3.5E-11 1.2E-15 103.0 17.9 115 41-159 42-159 (225)
79 2vq2_A PILW, putative fimbrial 99.4 4.1E-11 1.4E-15 102.6 18.4 117 39-159 6-125 (225)
80 1fch_A Peroxisomal targeting s 99.4 6.2E-12 2.1E-16 116.5 13.9 116 40-159 216-342 (368)
81 2gw1_A Mitochondrial precursor 99.4 1.4E-11 4.7E-16 119.1 16.9 107 37-148 2-108 (514)
82 2ho1_A Type 4 fimbrial biogene 99.3 2.2E-11 7.6E-16 106.9 16.0 116 40-159 70-187 (252)
83 3hym_B Cell division cycle pro 99.3 4.6E-11 1.6E-15 108.4 17.3 116 40-159 89-205 (330)
84 2fo7_A Synthetic consensus TPR 99.3 2.4E-11 8.4E-16 94.8 13.1 103 40-146 34-136 (136)
85 3fp2_A TPR repeat-containing p 99.3 1.3E-11 4.3E-16 120.3 13.1 121 20-149 8-128 (537)
86 3u4t_A TPR repeat-containing p 99.3 4.6E-11 1.6E-15 106.0 15.3 120 36-159 69-188 (272)
87 3hym_B Cell division cycle pro 99.3 5.4E-11 1.8E-15 107.9 16.1 116 40-159 124-248 (330)
88 3cv0_A Peroxisome targeting si 99.3 3.6E-11 1.2E-15 108.9 14.6 116 40-159 171-298 (327)
89 1qqe_A Vesicular transport pro 99.3 2.2E-11 7.5E-16 111.1 13.1 114 35-148 71-193 (292)
90 2xcb_A PCRH, regulatory protei 99.3 4.4E-11 1.5E-15 97.0 13.3 94 62-159 5-98 (142)
91 2kat_A Uncharacterized protein 99.3 6.2E-11 2.1E-15 92.2 13.7 84 59-146 3-86 (115)
92 3qou_A Protein YBBN; thioredox 99.3 2.8E-11 9.6E-16 110.4 13.4 117 39-159 115-267 (287)
93 3upv_A Heat shock protein STI1 99.3 3.1E-10 1.1E-14 89.4 17.4 82 78-159 3-84 (126)
94 1qqe_A Vesicular transport pro 99.3 1.4E-11 4.9E-16 112.3 10.9 124 26-149 102-235 (292)
95 3mkr_A Coatomer subunit epsilo 99.3 1.3E-10 4.6E-15 106.3 17.3 113 41-159 130-246 (291)
96 2r5s_A Uncharacterized protein 99.3 8.8E-11 3E-15 98.6 14.8 116 39-159 38-156 (176)
97 2e2e_A Formate-dependent nitri 99.3 6.9E-12 2.4E-16 105.0 7.8 109 47-159 16-127 (177)
98 3cv0_A Peroxisome targeting si 99.3 6E-10 2.1E-14 100.8 20.8 81 79-159 172-252 (327)
99 3mkr_A Coatomer subunit epsilo 99.3 8E-11 2.7E-15 107.8 15.0 102 49-154 174-276 (291)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.2E-10 7.5E-15 100.2 16.9 117 40-157 40-194 (225)
101 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.6E-10 8.9E-15 100.9 16.7 107 53-159 17-123 (275)
102 3qou_A Protein YBBN; thioredox 99.2 8.9E-11 3E-15 107.0 14.0 69 78-146 116-184 (287)
103 2vsy_A XCC0866; transferase, g 99.2 5.6E-11 1.9E-15 118.3 13.7 118 26-153 48-168 (568)
104 1na3_A Designed protein CTPR2; 99.2 1.1E-10 3.7E-15 86.1 11.4 84 39-126 7-90 (91)
105 2kc7_A BFR218_protein; tetratr 99.2 1.8E-11 6.3E-16 92.4 7.1 91 45-147 4-95 (99)
106 1p5q_A FKBP52, FK506-binding p 99.2 5.7E-11 1.9E-15 111.0 11.4 98 40-141 195-293 (336)
107 3fp2_A TPR repeat-containing p 99.2 2.3E-10 7.8E-15 111.4 15.7 115 41-159 276-390 (537)
108 4gcn_A Protein STI-1; structur 99.2 2.6E-10 9E-15 91.0 13.1 71 78-148 7-77 (127)
109 1a17_A Serine/threonine protei 99.2 1.3E-10 4.5E-15 94.9 11.4 107 26-142 38-146 (166)
110 3edt_B KLC 2, kinesin light ch 99.2 2.7E-10 9.1E-15 100.6 14.1 122 38-159 40-181 (283)
111 2xpi_A Anaphase-promoting comp 99.2 1.7E-10 5.9E-15 114.0 14.2 116 40-159 440-562 (597)
112 4g1t_A Interferon-induced prot 99.2 2.6E-10 8.8E-15 109.6 14.9 121 37-157 47-182 (472)
113 1na3_A Designed protein CTPR2; 99.2 6.3E-10 2.2E-14 81.8 13.0 80 78-157 8-87 (91)
114 3u3w_A Transcriptional activat 99.2 2.6E-10 9E-15 103.7 12.8 125 35-159 109-248 (293)
115 3ro3_A PINS homolog, G-protein 99.2 1E-09 3.6E-14 88.2 15.1 109 35-143 3-119 (164)
116 2ond_A Cleavage stimulation fa 99.2 4.2E-10 1.4E-14 103.2 14.2 122 23-154 38-175 (308)
117 2qfc_A PLCR protein; TPR, HTH, 99.2 2.8E-10 9.4E-15 103.5 12.8 126 34-159 108-248 (293)
118 2hr2_A Hypothetical protein; a 99.2 2.7E-10 9.3E-15 95.0 11.5 99 78-176 10-134 (159)
119 4a1s_A PINS, partner of inscut 99.2 6.9E-10 2.4E-14 104.5 15.9 122 38-159 45-178 (411)
120 3q49_B STIP1 homology and U bo 99.1 2.4E-09 8.3E-14 84.9 16.5 82 78-159 8-89 (137)
121 2l6j_A TPR repeat-containing p 99.1 5.9E-10 2E-14 85.0 12.2 69 78-146 3-71 (111)
122 3sz7_A HSC70 cochaperone (SGT) 99.1 1.3E-09 4.4E-14 90.1 14.6 83 77-159 9-91 (164)
123 2ond_A Cleavage stimulation fa 99.1 1.3E-09 4.6E-14 99.8 16.0 125 26-159 89-215 (308)
124 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 5.5E-11 1.9E-15 115.8 6.7 102 54-159 247-363 (457)
125 2ifu_A Gamma-SNAP; membrane fu 99.1 2.5E-10 8.5E-15 104.8 10.6 119 27-147 102-228 (307)
126 1hxi_A PEX5, peroxisome target 99.1 2E-09 6.9E-14 85.1 14.5 80 80-159 18-97 (121)
127 2gw1_A Mitochondrial precursor 99.1 3.3E-10 1.1E-14 109.3 11.9 108 44-151 375-487 (514)
128 2xpi_A Anaphase-promoting comp 99.1 1.5E-09 5.2E-14 107.2 16.8 116 40-159 372-487 (597)
129 3ulq_A Response regulator aspa 99.1 1.9E-09 6.7E-14 101.2 16.6 125 35-159 137-276 (383)
130 1wao_1 Serine/threonine protei 99.1 4.3E-11 1.5E-15 117.4 5.3 113 24-146 29-154 (477)
131 3ulq_A Response regulator aspa 99.1 6.1E-10 2.1E-14 104.7 13.0 108 37-144 180-295 (383)
132 3ro2_A PINS homolog, G-protein 99.1 2E-09 6.7E-14 97.0 15.6 107 40-146 4-116 (338)
133 3ma5_A Tetratricopeptide repea 99.1 2.9E-10 1E-14 86.7 8.4 68 78-145 6-73 (100)
134 3edt_B KLC 2, kinesin light ch 99.1 1.6E-09 5.4E-14 95.6 14.1 105 38-142 82-198 (283)
135 3sf4_A G-protein-signaling mod 99.1 6.7E-10 2.3E-14 103.6 12.0 107 39-145 7-119 (406)
136 3q15_A PSP28, response regulat 99.1 1.1E-09 3.7E-14 103.0 13.4 109 37-145 178-293 (378)
137 1dce_A Protein (RAB geranylger 99.1 7.7E-10 2.6E-14 110.8 12.8 123 27-159 55-190 (567)
138 2ifu_A Gamma-SNAP; membrane fu 99.1 1.7E-10 5.7E-15 106.0 7.4 111 35-146 70-188 (307)
139 3rkv_A Putative peptidylprolyl 99.1 2.6E-09 8.9E-14 88.1 13.8 99 78-176 10-129 (162)
140 2if4_A ATFKBP42; FKBP-like, al 99.1 1.4E-10 4.7E-15 108.5 6.3 103 42-148 231-334 (338)
141 3dra_A Protein farnesyltransfe 99.1 2.6E-09 8.9E-14 98.7 14.8 117 39-159 65-192 (306)
142 1zu2_A Mitochondrial import re 99.0 2.9E-10 1E-14 94.6 7.0 80 24-113 25-125 (158)
143 3ro3_A PINS homolog, G-protein 99.0 1E-09 3.5E-14 88.2 9.9 111 35-145 43-161 (164)
144 2vyi_A SGTA protein; chaperone 99.0 1.1E-09 3.9E-14 85.0 9.4 86 40-129 45-130 (131)
145 3nf1_A KLC 1, kinesin light ch 99.0 6.9E-09 2.4E-13 93.0 15.9 105 39-143 25-141 (311)
146 2qfc_A PLCR protein; TPR, HTH, 99.0 7.9E-09 2.7E-13 93.8 16.4 102 39-140 73-182 (293)
147 3gw4_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 89.0 13.5 105 39-143 24-137 (203)
148 2fbn_A 70 kDa peptidylprolyl i 99.0 1.1E-09 3.9E-14 93.3 9.9 108 48-159 11-134 (198)
149 3sf4_A G-protein-signaling mod 99.0 1.6E-08 5.5E-13 94.1 18.5 125 35-159 181-319 (406)
150 2kc7_A BFR218_protein; tetratr 99.0 3.7E-09 1.3E-13 79.4 11.4 68 83-150 4-72 (99)
151 3q15_A PSP28, response regulat 99.0 4.4E-09 1.5E-13 98.8 14.5 121 37-157 137-271 (378)
152 3u3w_A Transcriptional activat 99.0 5.3E-09 1.8E-13 94.9 14.4 107 36-142 70-184 (293)
153 2lni_A Stress-induced-phosphop 99.0 1.1E-08 3.8E-13 79.9 14.4 83 77-159 14-96 (133)
154 3nf1_A KLC 1, kinesin light ch 99.0 4.1E-09 1.4E-13 94.5 13.4 122 38-159 66-207 (311)
155 2c2l_A CHIP, carboxy terminus 99.0 9E-10 3.1E-14 100.1 8.7 118 26-153 29-175 (281)
156 3k9i_A BH0479 protein; putativ 99.0 1.3E-09 4.4E-14 85.2 8.4 75 39-117 25-99 (117)
157 2r5s_A Uncharacterized protein 99.0 9.9E-10 3.4E-14 92.1 8.0 82 56-141 89-172 (176)
158 4f3v_A ESX-1 secretion system 99.0 1.1E-08 3.9E-13 93.1 15.2 108 43-153 137-247 (282)
159 4g1t_A Interferon-induced prot 99.0 4.3E-09 1.5E-13 101.0 12.3 114 41-158 172-292 (472)
160 1ihg_A Cyclophilin 40; ppiase 98.9 2.9E-09 9.8E-14 100.9 10.7 93 39-135 271-363 (370)
161 3dss_A Geranylgeranyl transfer 98.9 1.6E-08 5.4E-13 94.4 15.1 129 21-159 49-191 (331)
162 1na0_A Designed protein CTPR3; 98.9 4.5E-08 1.5E-12 75.1 15.4 82 78-159 8-89 (125)
163 3dra_A Protein farnesyltransfe 98.9 6.8E-09 2.3E-13 96.0 12.3 117 39-159 101-232 (306)
164 1elw_A TPR1-domain of HOP; HOP 98.9 3.4E-08 1.2E-12 75.1 14.4 82 78-159 3-84 (118)
165 2kck_A TPR repeat; tetratricop 98.9 4.6E-09 1.6E-13 79.4 9.3 82 78-159 5-88 (112)
166 1ouv_A Conserved hypothetical 98.9 3.7E-08 1.3E-12 87.8 16.5 108 40-157 5-120 (273)
167 1dce_A Protein (RAB geranylger 98.9 4.1E-09 1.4E-13 105.5 11.1 122 27-158 99-237 (567)
168 4a1s_A PINS, partner of inscut 98.9 1E-08 3.6E-13 96.3 13.4 115 27-143 74-213 (411)
169 3q7a_A Farnesyltransferase alp 98.9 1.2E-08 4.2E-13 95.7 13.0 113 41-157 88-211 (349)
170 3n71_A Histone lysine methyltr 98.9 5.3E-08 1.8E-12 95.7 18.0 115 40-155 308-440 (490)
171 3gw4_A Uncharacterized protein 98.9 2E-08 6.8E-13 84.7 12.6 109 35-143 60-177 (203)
172 1pc2_A Mitochondria fission pr 98.9 1.8E-08 6.2E-13 83.0 11.8 97 57-157 14-115 (152)
173 2xev_A YBGF; tetratricopeptide 98.9 5.5E-08 1.9E-12 76.0 14.3 80 80-159 3-88 (129)
174 2dba_A Smooth muscle cell asso 98.9 2.8E-08 9.7E-13 79.2 12.6 82 78-159 27-111 (148)
175 3ro2_A PINS homolog, G-protein 98.9 2.9E-08 1E-12 89.2 13.4 110 36-145 178-295 (338)
176 2kat_A Uncharacterized protein 98.8 1E-08 3.4E-13 79.4 8.5 95 21-125 4-101 (115)
177 3dss_A Geranylgeranyl transfer 98.8 3.6E-08 1.2E-12 91.9 13.6 127 21-157 93-237 (331)
178 3ma5_A Tetratricopeptide repea 98.8 8.6E-09 3E-13 78.4 7.5 81 39-123 5-87 (100)
179 3q7a_A Farnesyltransferase alp 98.8 6.6E-08 2.2E-12 90.7 14.8 126 24-159 43-171 (349)
180 1ouv_A Conserved hypothetical 98.8 1.4E-07 4.9E-12 83.9 16.1 108 41-158 38-157 (273)
181 1elr_A TPR2A-domain of HOP; HO 98.8 1.1E-07 3.7E-12 73.7 13.0 82 78-159 3-91 (131)
182 3rjv_A Putative SEL1 repeat pr 98.8 7.2E-08 2.5E-12 83.5 13.0 111 40-159 17-137 (212)
183 2v5f_A Prolyl 4-hydroxylase su 98.8 7E-08 2.4E-12 74.2 11.0 80 41-120 5-87 (104)
184 3qww_A SET and MYND domain-con 98.7 9.3E-08 3.2E-12 92.5 13.5 114 42-156 299-430 (433)
185 3rjv_A Putative SEL1 repeat pr 98.7 7E-08 2.4E-12 83.6 11.3 112 40-159 49-174 (212)
186 3bee_A Putative YFRE protein; 98.7 1.1E-07 3.6E-12 72.0 10.9 79 78-156 5-86 (93)
187 1hz4_A MALT regulatory protein 98.7 4.9E-07 1.7E-11 84.1 17.3 118 28-146 41-168 (373)
188 2ooe_A Cleavage stimulation fa 98.7 1.9E-07 6.6E-12 91.7 14.8 108 39-150 270-393 (530)
189 3qwp_A SET and MYND domain-con 98.7 4.8E-07 1.6E-11 87.4 17.0 118 40-157 286-420 (429)
190 2ooe_A Cleavage stimulation fa 98.7 2.7E-07 9.3E-12 90.7 15.2 117 39-158 319-436 (530)
191 4f3v_A ESX-1 secretion system 98.6 2.7E-07 9.3E-12 83.9 11.4 146 41-196 102-255 (282)
192 1hz4_A MALT regulatory protein 98.6 2.9E-07 9.8E-12 85.6 11.9 110 34-143 86-204 (373)
193 2v5f_A Prolyl 4-hydroxylase su 98.6 8.1E-07 2.8E-11 68.2 11.9 80 78-157 4-90 (104)
194 1klx_A Cysteine rich protein B 98.5 1.7E-06 6E-11 69.7 11.7 95 47-151 31-133 (138)
195 2xm6_A Protein corresponding t 98.4 3.4E-06 1.2E-10 81.9 15.6 107 42-156 329-449 (490)
196 1nzn_A CGI-135 protein, fissio 98.4 3.6E-06 1.2E-10 66.9 11.3 101 55-159 15-120 (126)
197 3ly7_A Transcriptional activat 98.4 5.3E-06 1.8E-10 78.0 14.0 115 40-159 195-322 (372)
198 3n71_A Histone lysine methyltr 98.3 1.7E-06 5.8E-11 84.9 10.7 105 38-142 348-464 (490)
199 2xm6_A Protein corresponding t 98.3 5.1E-05 1.7E-09 73.5 19.6 107 42-158 292-410 (490)
200 3e4b_A ALGK; tetratricopeptide 98.2 9.1E-06 3.1E-10 78.6 13.0 107 43-158 178-294 (452)
201 4b4t_Q 26S proteasome regulato 98.2 7.9E-06 2.7E-10 77.1 11.1 105 39-143 53-205 (434)
202 1pc2_A Mitochondria fission pr 98.1 1.3E-05 4.4E-10 65.9 10.0 79 39-120 30-112 (152)
203 3mv2_B Coatomer subunit epsilo 98.1 2.2E-05 7.7E-10 72.2 12.0 108 40-154 175-294 (310)
204 1b89_A Protein (clathrin heavy 98.1 7.4E-06 2.5E-10 78.9 8.6 99 43-158 124-252 (449)
205 3e4b_A ALGK; tetratricopeptide 98.1 1.9E-05 6.4E-10 76.4 11.4 105 42-158 249-365 (452)
206 1xi4_A Clathrin heavy chain; a 98.1 2.5E-05 8.5E-10 84.2 13.0 106 42-159 1196-1326(1630)
207 1klx_A Cysteine rich protein B 98.1 3.7E-05 1.3E-09 61.7 11.1 93 55-159 9-105 (138)
208 3ffl_A Anaphase-promoting comp 98.1 2.8E-05 9.5E-10 64.5 10.2 119 37-156 16-164 (167)
209 3u64_A Protein TP_0956; tetrat 98.0 1.7E-05 5.7E-10 72.0 9.3 88 57-146 179-273 (301)
210 3bee_A Putative YFRE protein; 98.0 2.1E-05 7E-10 59.2 7.4 70 39-112 4-76 (93)
211 1xi4_A Clathrin heavy chain; a 98.0 4.2E-05 1.4E-09 82.4 12.4 95 46-145 1054-1166(1630)
212 3o48_A Mitochondria fission 1 98.0 0.0001 3.4E-09 58.9 11.4 83 78-160 39-125 (134)
213 3mv2_B Coatomer subunit epsilo 97.9 0.0006 2E-08 62.7 17.4 109 44-154 103-219 (310)
214 1y8m_A FIS1; mitochondria, unk 97.9 0.00023 7.9E-09 57.5 12.3 81 78-158 38-122 (144)
215 4b4t_Q 26S proteasome regulato 97.9 9.4E-05 3.2E-09 69.6 11.7 104 39-142 133-245 (434)
216 3qwp_A SET and MYND domain-con 97.7 0.0004 1.4E-08 66.8 12.5 90 37-126 325-426 (429)
217 3qww_A SET and MYND domain-con 97.6 0.00021 7E-09 68.9 9.3 77 38-114 337-422 (433)
218 1b89_A Protein (clathrin heavy 97.5 6.6E-05 2.2E-09 72.3 5.2 92 40-139 60-174 (449)
219 3ffl_A Anaphase-promoting comp 97.4 0.00067 2.3E-08 56.2 9.4 92 31-123 53-165 (167)
220 1nzn_A CGI-135 protein, fissio 97.3 0.0017 5.7E-08 51.5 9.8 78 40-119 34-114 (126)
221 3o48_A Mitochondria fission 1 97.2 0.0044 1.5E-07 49.3 10.9 79 39-120 38-119 (134)
222 3ly7_A Transcriptional activat 97.2 0.0013 4.6E-08 61.6 9.3 77 67-148 269-345 (372)
223 3u64_A Protein TP_0956; tetrat 97.1 0.0076 2.6E-07 54.6 13.2 63 94-156 178-248 (301)
224 1y8m_A FIS1; mitochondria, unk 97.1 0.0077 2.6E-07 48.5 11.5 78 39-119 37-117 (144)
225 2ff4_A Probable regulatory pro 97.0 0.016 5.4E-07 54.8 15.5 118 39-157 113-255 (388)
226 4e6h_A MRNA 3'-END-processing 96.4 0.02 6.8E-07 58.2 11.8 98 41-142 343-463 (679)
227 4e6h_A MRNA 3'-END-processing 96.4 0.045 1.5E-06 55.6 14.1 116 40-158 433-552 (679)
228 4h7y_A Dual specificity protei 96.2 0.1 3.6E-06 42.4 12.3 92 58-150 36-131 (161)
229 4gns_B Protein CSD3, chitin bi 95.1 0.077 2.6E-06 54.3 9.6 59 81-139 339-397 (754)
230 3txn_A 26S proteasome regulato 94.5 0.42 1.4E-05 45.1 12.4 97 46-142 104-210 (394)
231 2uy1_A Cleavage stimulation fa 94.1 1.5 5.2E-05 42.3 16.0 109 41-151 213-358 (493)
232 3kae_A CDC27, possible protein 94.0 0.68 2.3E-05 38.5 11.0 98 46-152 38-153 (242)
233 1zbp_A Hypothetical protein VP 94.0 0.42 1.4E-05 42.6 10.5 62 89-150 7-68 (273)
234 1zbp_A Hypothetical protein VP 93.8 0.58 2E-05 41.6 11.2 63 49-115 5-67 (273)
235 4b4t_R RPN7, 26S proteasome re 93.7 0.31 1.1E-05 46.4 10.0 104 39-143 129-238 (429)
236 4gns_B Protein CSD3, chitin bi 93.5 0.18 6.2E-06 51.6 8.4 61 41-105 337-397 (754)
237 1ya0_A SMG-7 transcript varian 92.9 0.81 2.8E-05 44.5 11.7 78 81-158 154-231 (497)
238 2uy1_A Cleavage stimulation fa 92.2 6.5 0.00022 37.8 17.1 95 40-139 285-380 (493)
239 4g26_A Pentatricopeptide repea 91.7 3.3 0.00011 40.1 14.4 97 43-142 107-204 (501)
240 1ya0_A SMG-7 transcript varian 90.6 1.1 3.8E-05 43.6 9.7 80 42-125 153-232 (497)
241 4b4t_P 26S proteasome regulato 89.9 7.3 0.00025 37.0 14.7 105 38-142 134-247 (445)
242 4g26_A Pentatricopeptide repea 88.7 9 0.00031 36.9 14.7 99 56-157 85-186 (501)
243 3mkq_B Coatomer subunit alpha; 88.6 6.4 0.00022 32.6 11.5 81 42-139 35-115 (177)
244 3mkq_A Coatomer beta'-subunit; 88.0 3.7 0.00013 41.2 11.8 82 47-137 658-747 (814)
245 4fhn_B Nucleoporin NUP120; pro 86.3 2.6 8.8E-05 45.2 9.8 93 45-137 846-962 (1139)
246 2ff4_A Probable regulatory pro 84.1 4 0.00014 38.0 9.1 61 42-106 172-232 (388)
247 3mkq_A Coatomer beta'-subunit; 83.8 7.2 0.00025 39.0 11.5 47 88-139 661-707 (814)
248 3mkq_B Coatomer subunit alpha; 83.0 2.9 9.9E-05 34.7 6.6 45 90-139 16-60 (177)
249 2w2u_A Hypothetical P60 katani 83.0 6 0.0002 28.4 7.6 18 124-141 30-47 (83)
250 2w2u_A Hypothetical P60 katani 82.7 1.9 6.7E-05 31.0 4.8 33 38-70 16-48 (83)
251 2v6y_A AAA family ATPase, P60 81.4 6.5 0.00022 28.1 7.3 18 124-141 22-39 (83)
252 3mv2_A Coatomer subunit alpha; 81.4 7.3 0.00025 35.4 9.2 104 44-147 117-241 (325)
253 2v6y_A AAA family ATPase, P60 80.6 2.5 8.7E-05 30.4 4.8 32 39-70 9-40 (83)
254 3mkr_B Coatomer subunit alpha; 78.2 11 0.00039 34.1 9.4 103 43-145 104-230 (320)
255 4h7y_A Dual specificity protei 78.0 6.3 0.00022 31.9 6.8 82 40-127 60-141 (161)
256 2crb_A Nuclear receptor bindin 76.8 6 0.00021 29.0 5.7 32 36-67 10-41 (97)
257 4a5x_A MITD1, MIT domain-conta 76.7 4.3 0.00015 29.3 5.1 33 38-70 13-45 (86)
258 1wfd_A Hypothetical protein 15 74.2 22 0.00076 25.8 8.5 34 37-70 11-44 (93)
259 4b4t_S RPN3, 26S proteasome re 74.2 47 0.0016 32.2 13.1 68 43-110 233-301 (523)
260 3kae_A CDC27, possible protein 73.9 37 0.0013 28.2 14.6 70 41-110 62-145 (242)
261 2v6x_A Vacuolar protein sortin 73.8 5.1 0.00017 28.7 4.8 34 37-70 9-42 (85)
262 3ax2_A Mitochondrial import re 73.7 5.7 0.00019 27.8 4.8 34 43-76 19-52 (73)
263 4b4t_S RPN3, 26S proteasome re 72.5 7.3 0.00025 37.9 6.9 73 74-146 226-303 (523)
264 2cpt_A SKD1 protein, vacuolar 72.0 5.3 0.00018 30.7 4.8 32 38-69 15-46 (117)
265 3spa_A Mtrpol, DNA-directed RN 71.4 32 0.0011 36.5 11.7 94 42-141 128-229 (1134)
266 1qsa_A Protein (soluble lytic 70.7 13 0.00045 37.0 8.5 57 85-141 291-347 (618)
267 4b4t_P 26S proteasome regulato 70.5 29 0.00098 32.8 10.7 88 20-107 155-246 (445)
268 3txn_A 26S proteasome regulato 69.9 21 0.00072 33.3 9.4 92 37-128 135-235 (394)
269 2ijq_A Hypothetical protein; s 66.9 33 0.0011 27.8 8.7 66 42-107 33-103 (161)
270 2vkj_A TM1634; membrane protei 65.4 33 0.0011 24.9 7.4 52 39-91 51-102 (106)
271 2ktr_A Sequestosome-1; autopha 65.1 10 0.00034 29.1 4.9 56 255-323 62-117 (117)
272 4b4t_R RPN7, 26S proteasome re 62.2 18 0.00063 33.9 7.4 78 80-157 132-214 (429)
273 2cfu_A SDSA1; SDS-hydrolase, l 60.1 24 0.0008 35.4 8.1 48 113-160 449-496 (658)
274 2crb_A Nuclear receptor bindin 59.7 17 0.00057 26.7 5.0 26 79-104 15-40 (97)
275 1om2_A Protein (mitochondrial 59.2 9.4 0.00032 28.2 3.7 31 43-73 22-52 (95)
276 4gq2_M Nucleoporin NUP120; bet 59.2 35 0.0012 35.7 9.6 25 45-69 844-868 (950)
277 4a5x_A MITD1, MIT domain-conta 58.8 46 0.0016 23.7 7.8 20 122-141 25-44 (86)
278 3ax2_A Mitochondrial import re 58.6 30 0.001 24.1 6.1 39 117-155 21-59 (73)
279 1wy6_A Hypothetical protein ST 55.3 75 0.0026 25.4 8.5 60 82-141 93-153 (172)
280 2kkc_A Sequestosome-1; P62, PB 54.5 20 0.00069 26.7 4.9 58 253-323 45-102 (102)
281 2cfu_A SDSA1; SDS-hydrolase, l 51.0 26 0.00089 35.0 6.7 52 82-133 452-503 (658)
282 2wpv_A GET4, UPF0363 protein Y 50.7 1E+02 0.0035 27.7 10.0 103 35-137 27-158 (312)
283 2rpa_A Katanin P60 ATPase-cont 50.5 13 0.00045 26.3 3.1 27 44-70 15-41 (78)
284 1wfd_A Hypothetical protein 15 49.5 71 0.0024 23.0 9.0 17 125-141 27-43 (93)
285 3qnk_A Putative lipoprotein; a 45.2 78 0.0027 30.3 8.9 66 77-142 107-211 (517)
286 2oo2_A Hypothetical protein AF 44.7 27 0.00092 25.2 4.1 31 35-65 29-59 (86)
287 3myv_A SUSD superfamily protei 42.8 58 0.002 30.7 7.5 47 95-141 164-218 (454)
288 3lew_A SUSD-like carbohydrate 41.5 60 0.002 31.0 7.4 48 95-142 174-232 (495)
289 3iqu_A 14-3-3 protein sigma; s 40.8 1.2E+02 0.0041 26.1 8.4 71 35-106 117-203 (236)
290 3kez_A Putative sugar binding 40.8 60 0.002 30.6 7.2 47 95-141 170-224 (461)
291 2v6x_A Vacuolar protein sortin 40.4 93 0.0032 21.8 9.0 18 124-141 24-41 (85)
292 2dl1_A Spartin; SPG20, MIT, st 39.8 97 0.0033 23.5 6.7 43 94-144 18-60 (116)
293 2a9u_A Ubiquitin carboxyl-term 39.2 87 0.003 24.7 6.7 65 3-69 2-70 (144)
294 3lvg_A Clathrin heavy chain 1; 39.0 0.078 2.7E-06 51.4 -13.1 79 44-139 147-225 (624)
295 2br9_A 14-3-3E, 14-3-3 protein 38.6 1.9E+02 0.0064 24.8 9.4 71 35-106 114-200 (234)
296 4gq2_M Nucleoporin NUP120; bet 38.6 1.8E+02 0.006 30.3 10.9 95 47-149 816-934 (950)
297 3i4g_A SUSD-like carbohydrate 38.6 91 0.0031 30.0 8.2 65 77-141 121-226 (528)
298 3t5v_B Nuclear mRNA export pro 38.4 68 0.0023 30.5 7.1 91 56-146 141-254 (455)
299 3t5x_A PCI domain-containing p 37.6 62 0.0021 27.0 6.0 61 36-96 9-70 (203)
300 1om2_A Protein (mitochondrial 36.8 49 0.0017 24.3 4.5 37 118-154 25-61 (95)
301 3jq1_A SUSD superfamily protei 36.3 64 0.0022 30.7 6.6 65 77-141 108-208 (481)
302 3mcx_A SUSD superfamily protei 36.3 72 0.0025 30.2 7.0 48 95-142 176-231 (477)
303 2pmr_A Uncharacterized protein 36.2 49 0.0017 23.8 4.4 28 38-65 36-63 (87)
304 2dl1_A Spartin; SPG20, MIT, st 35.7 57 0.0019 24.8 4.9 16 95-110 45-60 (116)
305 3t5x_A PCI domain-containing p 35.6 94 0.0032 25.8 6.9 40 78-117 13-52 (203)
306 4fhn_B Nucleoporin NUP120; pro 35.2 1.2E+02 0.0041 32.2 9.1 92 47-146 818-932 (1139)
307 2cwy_A Hypothetical protein TT 35.0 72 0.0025 23.1 5.3 60 46-107 6-67 (94)
308 3otn_A SUSD superfamily protei 34.7 60 0.002 30.8 6.1 65 77-141 114-225 (482)
309 2wb7_A PT26-6P; extra chromoso 34.5 1.4E+02 0.0047 28.7 8.3 33 95-127 455-488 (526)
310 2npm_A 14-3-3 domain containin 33.9 2.2E+02 0.0075 24.8 9.1 71 35-106 140-225 (260)
311 2o8p_A 14-3-3 domain containin 33.6 2.2E+02 0.0076 24.2 10.3 69 38-107 117-196 (227)
312 2ijq_A Hypothetical protein; s 32.2 2E+02 0.0067 23.1 8.4 58 85-142 38-104 (161)
313 3jys_A SUSD superfamily protei 29.7 2.2E+02 0.0077 27.0 9.4 66 76-141 117-222 (499)
314 2rpa_A Katanin P60 ATPase-cont 29.0 1.5E+02 0.0051 20.7 6.6 25 117-141 16-40 (78)
315 2jpu_A ORF C02003 protein; sol 28.9 56 0.0019 25.4 3.9 32 39-70 5-36 (129)
316 3mcx_A SUSD superfamily protei 28.1 1.2E+02 0.0043 28.5 7.2 53 57-109 176-232 (477)
317 3myv_A SUSD superfamily protei 28.1 1.1E+02 0.0038 28.6 6.8 51 57-107 164-218 (454)
318 3eab_A Spastin; spastin, MIT, 28.1 40 0.0014 24.4 2.7 17 56-72 12-28 (89)
319 3snx_A SUSD homolog, putative 27.8 74 0.0025 30.1 5.5 48 95-142 160-220 (460)
320 3hdx_A SUSD homolog, SUSD supe 27.7 1.2E+02 0.004 28.7 6.9 66 77-142 110-226 (478)
321 2pm7_A Protein WEB1, protein t 27.0 3.8E+02 0.013 24.7 11.7 95 39-138 246-361 (399)
322 1wy6_A Hypothetical protein ST 26.6 2.4E+02 0.0083 22.4 7.3 53 52-108 102-154 (172)
323 3ckc_A SUSD; TPR repeat, carbo 26.4 2E+02 0.0068 27.2 8.3 66 76-141 126-231 (527)
324 1wgr_A Growth factor receptor- 26.0 34 0.0012 25.4 2.1 27 279-305 11-37 (100)
325 3kez_A Putative sugar binding 25.9 1.3E+02 0.0043 28.4 6.7 51 57-107 170-224 (461)
326 2yhe_A SEC-alkyl sulfatase; hy 31.6 15 0.0005 37.0 0.0 44 116-159 464-507 (668)
327 3ub0_A Non-structural protein 25.6 2.8E+02 0.0096 22.8 8.5 15 129-143 19-33 (199)
328 3lew_A SUSD-like carbohydrate 25.0 1.4E+02 0.0047 28.4 6.8 52 57-108 174-232 (495)
329 3spa_A Mtrpol, DNA-directed RN 23.6 6.1E+02 0.021 27.0 11.6 75 80-155 128-209 (1134)
330 2yhe_A SEC-alkyl sulfatase; hy 29.1 17 0.00059 36.5 0.0 53 83-135 465-517 (668)
331 3bbd_A Ribosome biogenesis pro 22.9 47 0.0016 28.0 2.7 37 256-299 59-95 (205)
332 3re2_A Predicted protein; meni 22.7 2.4E+02 0.0084 26.1 7.4 86 38-142 232-325 (472)
333 2cpt_A SKD1 protein, vacuolar 22.0 2.5E+02 0.0087 21.0 11.1 16 125-140 30-45 (117)
334 2ymb_A MITD1, MIT domain-conta 21.9 19 0.00065 31.5 0.0 32 39-70 21-52 (257)
335 3efz_A 14-3-3 protein; 14-3-3, 21.1 1.8E+02 0.0062 25.5 6.1 16 126-141 210-225 (268)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.88 E-value=6.6e-22 Score=159.54 Aligned_cols=114 Identities=30% Similarity=0.519 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.|+.++++|+.+++.|+|++|+.+|++||+.+|. .+.+|.|+|.|+.++|++.+|+.+|++||+++|++.++|++
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 89999999999999999999999999999999998 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+|.++..+|++++|+.+|+++++++|+|..+...++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999998887765
No 2
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.83 E-value=7.4e-20 Score=152.55 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc--------ccCC------chHHHHHHHHHHHHHHHccCHHHHHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------KCAD------NDVNAQLYNNRAASNFFLKNYRSCLTD 101 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~--------~p~~------~~~~~~~~~nra~~~~~lg~~~~Al~d 101 (337)
+..+.+..+++.|+.+++.|+|++|+.+|++||.. .|.+ ......+|+|+|.|++++|+|.+|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44578999999999999999999999999999998 2221 122778999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHH
Q psy5660 102 CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS-TVIDLRTSCINKH 160 (337)
Q Consensus 102 ~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~-~~~~~l~~~~~~~ 160 (337)
|++||+++|+++++|+++|.++..+|++++|+.+|+++++++|++. .+...+..+..+.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 6677777776543
No 3
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.82 E-value=4.7e-20 Score=154.27 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc--------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN--------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-- 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-- 108 (337)
..|..+++.||.+++.|+|++|+.+|++||+++|+++ ...+.+|+|+|.|+.++|+|++|+.+|++||++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 5688999999999999999999999999999999832 124569999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 109 -----KPDYPKVK----LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 109 -----~P~~~ka~----~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|++.++| +++|.++..+|++++|+.+|+++++++|++..+...+..+.+.
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998776666665443
No 4
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.80 E-value=6.7e-19 Score=141.80 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----- 112 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~----- 112 (337)
.+.|.++++.||.+++.|+|++|+.+|++||+++|+ .+.+|.|+|.|++++|+|++|+.+|++||+++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 478999999999999999999999999999999998 56899999999999999999999999999999876
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 113 --PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 113 --~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
.++|+++|.++..+|++++|+.+|+++++++|+ ++...
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 368999999999999999999999999999885 44433
No 5
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.6e-18 Score=134.78 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+.+.|+.+++.|+|++|+..|+++++.+|+ ...+|.|+|.|+.++|+|++|+.++++|++++|++..++++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 77 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 57889999999999999999999999999999998 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKEN------PTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~~~ 158 (337)
+|.++..+|++++|+.+++++++++ |++..+...+..+..
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999888888877754
No 6
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.76 E-value=1.5e-17 Score=138.65 Aligned_cols=111 Identities=9% Similarity=0.036 Sum_probs=105.1
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
++..+| +.+..+...|..+++.|+|++|+.+|++++..+|. ++.+|.|+|.|+..+|+|++|+..|++|+
T Consensus 28 al~l~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 28 INAIPD------DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp GCCSCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 455555 88999999999999999999999999999999999 56899999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+++|+++.+++++|.|+..+|++++|+.+|++++++.|++.
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999864
No 7
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.75 E-value=3.4e-17 Score=136.59 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=105.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
+.....+..+...|+.+++.|+|++|+.+|+++++.+|. ...+|.++|.|++.+|+|++|+.++++|++++|++..
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 80 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK 80 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 344488999999999999999999999999999999998 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
+++++|.++..+|++++|+.+|+++++++|++..+.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 999999999999999999999999999999998743
No 8
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.74 E-value=3.4e-17 Score=135.37 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=114.7
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
.-+++..+| +.+..+...|..++..|+|++|+..|++++..+|. +..+|.++|.|+..+|+|++|+..++
T Consensus 10 ~~~al~~~p------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 10 IAMLNEISS------DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----DSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp HHHHTTCCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCH------hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566666 78899999999999999999999999999999998 56899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.....+.++...
T Consensus 80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 135 (148)
T 2vgx_A 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135 (148)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776666655544
No 9
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.74 E-value=5.9e-17 Score=132.21 Aligned_cols=125 Identities=11% Similarity=0.093 Sum_probs=113.7
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
-+++..+| +.+..+...|..+++.|+|++|+..|++++..+|. +..+|.++|.|+..+|+|++|+..+++
T Consensus 8 ~~al~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 8 AMLRGLSE------DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----DARYFLGLGACRQSLGLYEQALQSYSY 77 (142)
T ss_dssp -CCTTCCH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCH------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34565665 77889999999999999999999999999999998 568999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|+.++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.......++...
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998777766666544
No 10
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=2.8e-17 Score=135.96 Aligned_cols=116 Identities=10% Similarity=0.079 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.+..+...|+.+++.|+|++|+.+|+++|+++|+ ++.+|.++|.|+..+|++++|+..+++|++++|+++.++++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 104 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLK 104 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHH
Confidence 78888999999999999999999999999999999 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHL-CDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~-~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+|.++..+|++++|... ++++++++|+|+.+..++.++..
T Consensus 105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999887765 59999999999999888776643
No 11
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=2.9e-16 Score=147.14 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
..+..+.+.|+.+++.|+|++|+.+|++|+.+.|.+. .....+|.|+|.|++++|+|++|+.+|++|++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999852 22368999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
++|++.++++++|.++..+|++++|+.+|+++++++|++..+...++.+.....
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888876533
No 12
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.71 E-value=2.3e-16 Score=154.07 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc-----------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN-----------DVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~-----------~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
..+..++++|+.+++.|+|.+|+.+|++|+++.|.+. .....+|.|+|.|++++|+|++|+.+|++||+
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999862 23478999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
++|++.++|+++|.++..+|++++|+.+|+++++++|++..+...+..+.....
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888776543
No 13
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.69 E-value=1.2e-15 Score=131.16 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND------------VNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~------------~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
..+.+..+...|+.+++.|+|++|+..|.+++...|.++. +...++.|+|.|++.+|+|++|+.+|++
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 113 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3467889999999999999999999999999999887541 1248999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
|++++|.+.++++++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus 114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888876543
No 14
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.68 E-value=1.1e-15 Score=145.44 Aligned_cols=124 Identities=21% Similarity=0.232 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC------------CchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA------------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
..+.+..++..|+.+++.|+|++|+.+|++|++..+. .......+|.|+|.|++++|+|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4567889999999999999999999999999993222 1123789999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
|++++|++.++++++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888776553
No 15
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=1.4e-15 Score=156.38 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.+.++.+.|+.+.++|+|++|+.+|++||+++|+ .+.+|.|+|.++.++|++++|+..+++|++++|++..+|++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 44555555555555555555555555555555554 33455555555555555555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+|.++..+|++++|+++|+++++++|++..+...++.+..
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554444443
No 16
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.68 E-value=7.9e-16 Score=123.23 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|+.++..|+|++|+.+|++++...|. ...+|.++|.|+..+|++++|+..+++|++++|++..+++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45788999999999999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPT-----DSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~-----~~~~~~~l~~~~~~ 159 (337)
+|.++..+|++++|+.+|+++++++|+ +..+...+..+..+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 67777766666543
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.64 E-value=3.9e-15 Score=153.13 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=118.7
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
.-++|..+| +.+..+.+.|+.+.+.|++++|+.+|++||+++|+ .+.+|.|+|.++..+|++++|+..++
T Consensus 32 ~~kAl~l~P------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~----~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 32 YRKALEVFP------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT----FADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp HHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345688888 66889999999999999999999999999999999 66999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 102 kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 102 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 99999999999999999999999999999999999999999999999988888765
No 18
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=8.4e-15 Score=112.85 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|+.++..|+|++|+.+|.+++...|. ...++.++|.++..+|++.+|+..++++++++|.+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 5778999999999999999999999999999998 458999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
|.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998887776664
No 19
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.63 E-value=1.2e-14 Score=126.26 Aligned_cols=115 Identities=9% Similarity=0.063 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHH----------------HHHHHHHccCHHHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN----------------RAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~n----------------ra~~~~~lg~~~~Al~d~~ 103 (337)
.+..+..+|..++..|+|++|+.+|++++..+|+ ++.+|.+ +|.++.++|++++|+..++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4677889999999999999999999999999998 6677888 9999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+..
T Consensus 79 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 79 ELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888887753
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=8.3e-15 Score=128.20 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=101.4
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-----------cC
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-----------KN 94 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-----------g~ 94 (337)
+++..+| ..+..+...|..+.+.|++++|+..|+++++++|+ ...++.++|.++..+ |+
T Consensus 30 ~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~g~ 99 (217)
T 2pl2_A 30 RALKENP------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----YLGGYMVLSEAYVALYRQAEDRERGKGY 99 (217)
T ss_dssp HHHTTSS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence 3566676 56777888888888888888888888888888887 457888888888888 88
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+++|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++ ++..+...++.+...
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS 163 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888 788887777776554
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=3.7e-15 Score=142.43 Aligned_cols=125 Identities=11% Similarity=0.111 Sum_probs=103.8
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HHHHHHHHH
Q psy5660 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YRSCLTDCQ 103 (337)
Q Consensus 25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~~Al~d~~ 103 (337)
+.+|.++| ..+..+...|..+.+.|++++|+..|+++|.++|+ +..+|.+||.++..+|+ +++|+.+++
T Consensus 87 ~~ai~~~p------~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----~~~a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 87 VVQIIYSD------KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----NYTVWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp SSEECCCH------HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred chhhhCCh------hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----CHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 45666666 77888888888888888888888888888888888 56888888888888886 888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 157 ~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888777777655
No 22
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=1e-14 Score=127.68 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..+++.|++++|+..|+++++.+|+ +..++.++|.++..+|++++|+..+++|++++|++..+++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3567889999999999999999999999999999 568999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 120 AQCLFHL-----------KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~l-----------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|.++..+ |++++|+..++++++++|++..+...++.+...
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999888887665
No 23
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.63 E-value=2.1e-15 Score=124.63 Aligned_cols=109 Identities=10% Similarity=-0.029 Sum_probs=100.5
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l 126 (337)
.|+.+..+|++++|+..|.+++...|. .+..++++|.+|+++|+|++|+..+++|++++|+++.+|+.+|.++..+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~----~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ----KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH----HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 578888899999999999999999887 7788999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 127 KKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 127 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|++++|+.+|+++++++|++..+...++.+...
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999998887655
No 24
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=2.3e-15 Score=143.90 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=117.2
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNK-YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~-y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
++|..+| ..+..+..+|..+...|+ +++|+.+|+++|.++|+ +..+|+|||.++..+|++.+|+.+|++
T Consensus 122 ~al~l~P------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----~~~a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 122 DAIELNA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----NYQVWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp HHHHHCT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHhCc------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3567787 678899999999999997 99999999999999999 669999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
||+++|++..+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 192 al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 192 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888765
No 25
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.62 E-value=6.8e-14 Score=114.88 Aligned_cols=118 Identities=26% Similarity=0.337 Sum_probs=110.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
+..+.+..+...|+.++..|+|+.|+..|.+++...|. ...++.++|.++..+|++.+|+..++++++++|.+..+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 34578999999999999999999999999999999998 56899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
++.+|.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999988876665553
No 26
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-14 Score=115.98 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..++..|+|++|+.+|+++++..|++ .....++.++|.++..+|+|++|+..++++++++|.+..+++.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 567889999999999999999999999999999862 1237899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|.++..+|++++|+.+++++++++|++..+...+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999998887776653
No 27
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.62 E-value=7.1e-16 Score=144.71 Aligned_cols=121 Identities=22% Similarity=0.223 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-------------HHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-------------VNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-------------~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
.+.+..++++|+.+++.|+|.+|+.+|++|+...|.+.. +...+|.|+|.|++++|+|.+|+.+|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999999999999999999886320 0114899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
||+++|++.++++++|.++..+|++++|+.+|+++++++|++..+...+..+..
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888777643
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.62 E-value=1.6e-15 Score=120.81 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+...|..+++.|++++|+..|.++++.+|+ +..+|.++|.++..+|++++|+..+++|++++|++..+++.+|.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 93 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34678999999999999999999999999999 56899999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
++..+|++++|+.+++++++++|++..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999999998754
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-14 Score=114.61 Aligned_cols=119 Identities=28% Similarity=0.423 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.....+..+...|+.++..|+|++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 86 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG 86 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence 33477899999999999999999999999999999998 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++.+|.++..+|++++|+.+++++++++|++..+...++.+..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999888777766643
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=8.9e-14 Score=117.16 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..|.+.|+.+++.|+|++|+.+|+++++++|+ +..++.++|.++.++|++++|+..+.+++..+|++..++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4556666777777777777777777777777766 345566666666666666666655555555555555554444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
|.++...++++.|...+.++++++|++..+...++.+
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 4444444444444444444444444444444444443
No 31
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=8.3e-14 Score=109.02 Aligned_cols=119 Identities=26% Similarity=0.338 Sum_probs=110.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.....+..+...|..++..|+++.|+..|.+++...|. ...++.++|.++..+|++.+|+..+.+++.++|.+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 82 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence 44578899999999999999999999999999999998 46889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++.+|.++..+|++++|+.+++++++++|++..+...++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877776654
No 32
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.59 E-value=5.1e-14 Score=122.91 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
+..+...|..++..|+|++|+.+|+++++..| . ...++.++|.|+..+|++++|+..+++|++++|++..+++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ----DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 37888999999999999999999999999987 5 347888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
|.++..+|++++|+.+++++++++|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 999999999999999999999999999844
No 33
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.58 E-value=4.2e-14 Score=110.93 Aligned_cols=116 Identities=22% Similarity=0.342 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------ 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------ 112 (337)
+.+..+...|..++..|+|++|+.+|.+++...|. ...++.++|.++..+|++.+|+..+++++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 56888999999999999999999999999999988 46889999999999999999999999999999887
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 113 -PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 113 -~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+++++|.++..+|++++|+.+++++++++| +......+..+...
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 57776666666544
No 34
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=3.8e-14 Score=112.09 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLR 118 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r 118 (337)
..+...|..++..|+|++|+..|.+++...|+++. ...++.++|.+++.+|+|++|+..++++++.+|++ ..+++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35678999999999999999999999999997542 34788999999999999999999999999999999 899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++..+|++++|+..++++++..|++..+...+..+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766665543
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=2.2e-13 Score=114.76 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=117.7
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
.-++|..+| +.+..+...|..+++.|++++|+..+.+++...|. ...++.++|.++...+++..|+..+.
T Consensus 28 ~~~al~~~p------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 28 YKKVLKADP------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----SAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677888 56788999999999999999999999999999998 56889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|+.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888766
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.56 E-value=4.6e-14 Score=128.66 Aligned_cols=103 Identities=22% Similarity=0.320 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..++.+|+.+++.|+|++|+..|++++..+|+ +..+|.|+|.++.++|+|++|+.++++|++++|++.++++++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4678999999999999999999999999999998 568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|.++..+|++++|+.+|+++++++|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999876
No 37
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.55 E-value=7.8e-14 Score=121.12 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=94.1
Q ss_pred hccccCCCCCChHHHHHHHHH----------------HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKD----------------EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~----------------~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~ 89 (337)
+++..+| +.+..+.. .|..+++.|+|++|+..|+++++.+|+ ...++.++|.++
T Consensus 29 ~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~ 98 (208)
T 3urz_A 29 QTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN----NVDCLEACAEMQ 98 (208)
T ss_dssp HHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred HHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHH
Confidence 3455666 66667777 999999999999999999999999999 568999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----------------------------------CCHHHHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL-----------------------------------KKFEDCTH 134 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l-----------------------------------g~~~eA~~ 134 (337)
..+|++++|+..+++|++++|++..+++.+|.++... |++++|+.
T Consensus 99 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARN 178 (208)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999999999999988888776543 45667777
Q ss_pred HHHHHHhhCCCC
Q psy5660 135 LCDELLKENPTD 146 (337)
Q Consensus 135 ~~~~al~l~P~~ 146 (337)
+|+++++++|++
T Consensus 179 ~~~~al~l~P~~ 190 (208)
T 3urz_A 179 SLQKVILRFPST 190 (208)
T ss_dssp HHHHHTTTSCCH
T ss_pred HHHHHHHhCCCH
Confidence 777777777753
No 38
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.54 E-value=3.8e-13 Score=104.33 Aligned_cols=116 Identities=17% Similarity=0.299 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
...+..+...|..++..|++++|+..|.+++...|. ...++.++|.++...|++++|+..+++++..+|.+..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 345788899999999999999999999999999987 4578999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999998887776654
No 39
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.53 E-value=2.4e-14 Score=119.43 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY----------RSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~----------~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
-+.+.|++|+..|.++++++|+ .+.+|.|+|.++..++++ ++|+..|++||+++|++..+|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3456899999999999999999 569999999999999876 59999999999999999999999999
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 122 CLFHLK-----------KFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 122 a~~~lg-----------~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+|..+| ++++|+.+|+++++++|++......+..+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999885 89999999999999999998665554443
No 40
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.53 E-value=2.3e-13 Score=114.13 Aligned_cols=123 Identities=17% Similarity=0.245 Sum_probs=109.7
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHH-HHHccCH--HHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS-NFFLKNY--RSCLT 100 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~-~~~lg~~--~~Al~ 100 (337)
.-+++..+| ..+..+...|..++..|+|++|+.+|.+++...|. +..++.++|.+ +...|++ ++|+.
T Consensus 33 ~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 33 LQDKIRANP------QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----NAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp HHHHHHHCC------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred HHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 334566676 45678999999999999999999999999999998 46889999999 8899999 99999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.++++++++|++..+++.+|.++..+|++++|+.+++++++++|++.....++..+
T Consensus 103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987665554443
No 41
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.51 E-value=5.9e-14 Score=110.38 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=86.6
Q ss_pred HhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCH
Q psy5660 53 KCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~ 129 (337)
..|++++|+.+|+++++. +|. ...++.++|.++..+|+|++|+..+++|++++|++..+++.+|.++..+|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence 358999999999999999 465 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 130 EDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
++|+..++++++++|+++.+....
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999998775543
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=8e-13 Score=115.25 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-------H
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-------K 114 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-------k 114 (337)
..+...|..++..|+|++|+.+|.+++..+|. ...+|.++|.++..+|++++|+..++++++++|++. .
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 118 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI 118 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 46667999999999999999999999999998 779999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPT--DSTVIDLRTSCINK 159 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~~~~~ 159 (337)
+++.+|.++..+|++++|+.+|+++++++|+ +..+...++.+...
T Consensus 119 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 119 YYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999 88888877777544
No 43
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=4.8e-13 Score=107.21 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=82.8
Q ss_pred HHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 66 EGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 66 ~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+...++|. .+..+.|+|.++++.|+|++|+..+++||+++|.+..+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 4 r~a~inP~----~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 4 RLAYINPE----LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp ---CCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 44456776 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy5660 146 DSTVIDLRTSCINK 159 (337)
Q Consensus 146 ~~~~~~~l~~~~~~ 159 (337)
+..+...++.+...
T Consensus 80 ~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 80 FIKGYIRKAACLVA 93 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999988766
No 44
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.48 E-value=7.1e-14 Score=137.19 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.|..+...|+.+++.|+|++|+.+|++|++.+|+ .+.+|.|+|.++.++|+|++|+.++++|++++|++..++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 79 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56777888999999999999999999999999998 57999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999988888777763
No 45
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=1.2e-13 Score=105.32 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVKLR 118 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~~r 118 (337)
+..+...|..++..|++++|+.+|.++++..|. ...++.++|.++..+|++++|+..++++++++|. +..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 455678999999999999999999999999998 4588999999999999999999999999999999 9999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhhCCCCH
Q psy5660 119 AAQCLFHL-KKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 119 ~a~a~~~l-g~~~eA~~~~~~al~l~P~~~ 147 (337)
+|.++..+ |++++|++++++++..+|.+.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999998763
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.2e-13 Score=117.02 Aligned_cols=114 Identities=24% Similarity=0.346 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..++..|+|++|+.+|++++...|. ...++.++|.++..+|++++|+..++++++++|++..+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 55666777777777777777777777777777776 34677777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKEN------PTDSTVIDLRTSC 156 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~~ 156 (337)
+|.++..+|++++|+.+++++++++ |++..+...+.++
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 7777777777777777777777777 7666666655443
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.46 E-value=2.2e-12 Score=118.25 Aligned_cols=118 Identities=10% Similarity=0.098 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
....|+.+++.|++++|+..|++++...|.++.....++.++|.++..+|++.+|+..++++++++|++..+++.+|.++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45679999999999999999999999999987777788999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
..+|++++|+.+++++++++|++..+...+..+....+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888766533
No 48
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=4.6e-13 Score=111.21 Aligned_cols=97 Identities=9% Similarity=-0.077 Sum_probs=90.8
Q ss_pred HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 59 ~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
.+-..|.+++.++|+ ....++++|.+++++|+|++|+..+++|+.++|.+..+|+.+|.++..+|++++|+.+|++
T Consensus 20 ~~~~~l~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 20 NSGATLKDINAIPDD----MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp HTSCCTGGGCCSCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344568888999998 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHH
Q psy5660 139 LLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 139 al~l~P~~~~~~~~l~~~~~~ 159 (337)
+++++|++..+...++.+...
T Consensus 96 al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHH
T ss_pred HHhhCCCCcHHHHHHHHHHHH
Confidence 999999999999999988776
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=8.3e-13 Score=129.24 Aligned_cols=116 Identities=11% Similarity=0.064 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhhC
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---------KNYRSCLTDCQIALKLK 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---------g~~~~Al~d~~~Al~l~ 109 (337)
..+..+...|..+++.|+|++|+.+|.++++++|+ ..++.++|.++..+ |++++|+..+++|++++
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 34556667777777777777777777777776664 25666666666666 66666666666666666
Q ss_pred CCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHH
Q psy5660 110 PDYPKVKLRAAQCLFHL--------KKFEDCTHLCDELLKENP---TDSTVIDLRTSCINK 159 (337)
Q Consensus 110 P~~~ka~~r~a~a~~~l--------g~~~eA~~~~~~al~l~P---~~~~~~~~l~~~~~~ 159 (337)
|++..+++.+|.++..+ |++++|+.+|+++++++| ++..+...++.+...
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~ 270 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY 270 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH
Confidence 66666666666666666 666666666666666666 666665555555443
No 50
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.3e-11 Score=108.00 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----------------------CchHHHHHHHHHHHHHHHccCH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----------------------DNDVNAQLYNNRAASNFFLKNY 95 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----------------------~~~~~~~~~~nra~~~~~lg~~ 95 (337)
...+..+...|..+...|++++|+.+|.+++...|. .......++.++|.++..+|++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 344889999999999999999999999999995543 2223778999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 96 ~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++|+..++++++++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+...
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998888887765
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=9.7e-12 Score=110.25 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
..+...+..+...|..++..|++++|+.+|.+++...|. ...+|.++|.++..+|++++|+..+++|++++|.+..
T Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 112 (275)
T 1xnf_A 37 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH
Confidence 345688999999999999999999999999999999998 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+++.+|.++..+|++++|+.+++++++++|++........
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999986554443
No 52
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=2.5e-12 Score=128.08 Aligned_cols=126 Identities=9% Similarity=0.048 Sum_probs=111.1
Q ss_pred hhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 25 lqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
-+++..+| ..+..+...|..++..|+|++|+..|+++++.+|+ ...++.++|.++..+|++++|+..+++
T Consensus 13 ~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 13 RAAVRHRP------QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----HPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566666 45788999999999999999999999999999998 568999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+....
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888888776554
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=6.7e-12 Score=103.90 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|..++..|++++|+.+|.++++..|. ...++.++|.++...|++++|+..+++++..+|.+..+++.+|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPD----NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 455556666666666666666666666666555 3355666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.++..+|++++|+.+++++++.+|.+..+...++.+.
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 6666666666666666666666666655555554443
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.43 E-value=1e-11 Score=108.01 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..++..|++++|+..|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSS----AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4678889999999999999999999999999887 568899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|.++..+|++++|+..++++++++|++..+...++.+...
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888777776554
No 55
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=4.7e-12 Score=108.72 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|+.++..|+|++|+..|++++. + .+.++.++|.++..+|++.+|+..+++|++++|.+..+++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 76 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD--P-----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 4567788999999999999999999999962 3 35799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDS----------------TVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~----------------~~~~~l~~~~~~ 159 (337)
+|.++..+|++++|+.+|++++++.|++. .+...++.+...
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999877 777777776654
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=1.8e-12 Score=115.15 Aligned_cols=125 Identities=9% Similarity=0.033 Sum_probs=107.6
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
++..+| ..+..+...|..++..|+|++|+..|.+++. .|.++...+.+|.++|.++..+|++++|+..+++++
T Consensus 29 ~l~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 29 LEAKKY------NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHTTC------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCC------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455666 2344788899999999999999999999999 566666667789999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT-SCIN 158 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~-~~~~ 158 (337)
+++|.+..++..+|.++..+|++++|+.+++++++++|.+..+...++ .+..
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988888777 4433
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1.7e-11 Score=101.44 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
...+..+...|..++..|++++|+..|.+++...|. ...++.++|.++...|++++|+..++++++.+|.+..+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF----DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 367888999999999999999999999999999987 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|.++...|++++|+..++++++++|.+..+...++.+...
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888877776654
No 58
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=1.3e-13 Score=105.84 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------H
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY------P 113 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~------~ 113 (337)
.+..+...|+.++..|+|++|+..|+++++..|. ...++.|+|.|+..+|++++|+..+++|++++|++ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 5678899999999999999999999999999998 56889999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
.+++++|.++..+|++++|+..+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 9999999999999998888766553
No 59
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.41 E-value=2.7e-12 Score=110.27 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP------ 113 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~------ 113 (337)
.+..+...|..++..|+|++|+..|.+++..+|. ...++.++|.++..+|++++|+..+++++++.|.+.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 111 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKI 111 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 3578999999999999999999999999999998 568999999999999999999999999999988877
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 114 ----------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 114 ----------ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.+++.+|.++..+|++++|+.+++++++++|++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 112 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999986
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=2.2e-12 Score=126.17 Aligned_cols=125 Identities=8% Similarity=0.022 Sum_probs=114.0
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHh---------CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKC---------NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL---- 92 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~---------g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l---- 92 (337)
+++..+| . +..+...|..+... |++++|+.+|.++++++|+ ...+|.++|.++..+
T Consensus 162 ~al~~~p------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 162 GALTHCK------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL----DGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHTTCC------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhCC------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHhh
Confidence 4566665 2 47888999999999 9999999999999999998 568999999999999
Q ss_pred ----cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy5660 93 ----KNYRSCLTDCQIALKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHK 161 (337)
Q Consensus 93 ----g~~~~Al~d~~~Al~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~~ 161 (337)
|++++|+..+++|++++| .+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.....
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999998888887766543
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=9e-12 Score=111.07 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCC
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF--------LKNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~--------lg~~~~Al~d~~~Al~l~P~ 111 (337)
.+..+...|..+++.|+|++|+..|++++...|+++. ...+++++|.|++. +|++++|+..++++++.+|+
T Consensus 51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR-VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 3677888888888888888888888888888876543 45778888888888 88888888888888888888
Q ss_pred CHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy5660 112 YPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLRTSCIN 158 (337)
Q Consensus 112 ~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~ 158 (337)
+..+. +.+|.++..+|++++|+..|+++++..|++ ..+...++.+..
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 76555 788888888888888888888888888874 345555555543
No 62
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=4.8e-12 Score=118.92 Aligned_cols=115 Identities=16% Similarity=0.215 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..+...|++++|+..|.+++...|+ ...++.++|.++..+|++++|+..++++++++|.++.+++.+
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 277 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455556666666666666666666666666665 345566666666666666666666666666666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 666666666666666666666666666555555554443
No 63
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=6.6e-13 Score=135.79 Aligned_cols=116 Identities=12% Similarity=-0.043 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.+..+..+|..++..|+|++|+..|+++++.+|+ +..+|+++|.+++.+|+|++|+.++++|++++|++..+++.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 44567889999999999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++..+|++++ +.+|+++++++|++..+...++.+...
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~ 546 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA 546 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999998888887665
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=2.1e-11 Score=95.16 Aligned_cols=114 Identities=17% Similarity=0.277 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+...|..++..|++++|+..|.+++...|. ...++.++|.++...|++++|+..+++++..+|.+..+++.+|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 45778899999999999999999999999887 45788999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 122 CLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++...|++++|+.+++++++..|.+..+...++.+...
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999998877776666543
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=3.5e-13 Score=137.83 Aligned_cols=114 Identities=11% Similarity=-0.093 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+..+|..++..|+|++|+..|++|++++|++ ..+|.|+|.++.++|+|++ +..|++|++++|++..++++
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~----~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE----LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHH
Confidence 456788999999999999999999999999999994 5899999999999999999 99999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence 999999999999999999999999999998888777774
No 66
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.39 E-value=1.9e-11 Score=116.44 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=106.2
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDC 102 (337)
Q Consensus 23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~ 102 (337)
...+.+..+| ..+..+...|+.+++.|+|++|+..|++++...|. ...++.++|.++..+|++++|+..+
T Consensus 14 ~~~~~~~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 14 GTENLYFQSM------ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------C------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444555666 88999999999999999999999999999999998 5689999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH---HHHHHHH
Q psy5660 103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS---TVIDLRT 154 (337)
Q Consensus 103 ~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~---~~~~~l~ 154 (337)
+++++++|++..+++.+|.++..+|++++|+..|+++++++|++. .+...+.
T Consensus 84 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (450)
T 2y4t_A 84 TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 6655443
No 67
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=8.7e-12 Score=117.12 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|..+.+.|++++|+..|+++++.+|+ ...+|.++|.++...|++++|+..+++++.++|++..+++.+|
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 445555666666666666666666666666665 3456666666666666666666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.++...|++++|+..++++++++|++..+...++.+..
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66666677777777777776666666666655555543
No 68
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.39 E-value=1.8e-11 Score=107.14 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK---VKL 117 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k---a~~ 117 (337)
+..+.+.|..+++.|+|++|+..|++++...|.++. ...++.++|.+++++|+|++|+..++++++.+|++.. +++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 567889999999999999999999999999887542 4578999999999999999999999999999999875 899
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 118 RAAQCLFH------------------LKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 118 r~a~a~~~------------------lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
.+|.++.. .|++++|+..|+++++..|++..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99999886 5799999999999999999997665443
No 69
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.38 E-value=1e-11 Score=115.57 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+.++.++|.++..+|++++|+..++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888888888888888888888888888877777776
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
..
T Consensus 292 ~~ 293 (365)
T 4eqf_A 292 IN 293 (365)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=1.4e-11 Score=109.85 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka 115 (337)
..+..+...|..+++.|+|++|+..|++++...|.++ ....++.++|.|++++|+|.+|+..+++++++.|++ ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4578899999999999999999999999999999753 236899999999999999999999999999998854 679
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 116 KLRAAQCLFH--------LKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 116 ~~r~a~a~~~--------lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
++.+|.++.. +|++++|+..|+++++.+|++..+...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 9999999999 9999999999999999999997665444
No 71
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.38 E-value=1.8e-11 Score=112.16 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.++.+...|+.++..|+|++|+..|++++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4678889999999999999999999999999998 458999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENP---TDSTVIDLRT 154 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P---~~~~~~~~l~ 154 (337)
|.++..+|++++|+..|+++++++| ++..+...+.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 9999999999999999999999999 7777766554
No 72
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.38 E-value=1.4e-11 Score=117.48 Aligned_cols=116 Identities=9% Similarity=0.096 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
....|+.+++.|++++|+.+|++++...|.++.....++.++|.++.++|++++|+..++++++++|++..+++.+|.++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35569999999999999999999999999977666789999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+|++++|+.+++++++++|++..+...++.+...
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877654
No 73
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.38 E-value=3.7e-11 Score=111.20 Aligned_cols=81 Identities=10% Similarity=-0.027 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+.++.++|.++..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888888888888888877777777665
Q ss_pred H
Q psy5660 159 K 159 (337)
Q Consensus 159 ~ 159 (337)
.
T Consensus 297 ~ 297 (368)
T 1fch_A 297 N 297 (368)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.38 E-value=1.2e-11 Score=115.12 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC----------
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP---------- 110 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---------- 110 (337)
+..+...|..++..|+|++|+.+|+++++..|. ...++.++|.++..+|++++|+..++++++++|
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPN----NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 444555555555555555555555555555554 234555555555555555555544444444333
Q ss_pred ----------------------------------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 111 ----------------------------------D--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 111 ----------------------------------~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
. +..+++.+|.++..+|++++|+.+|+++++++|++..+...++
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 254 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLG 254 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 4555555566666666666666666666666666555555555
Q ss_pred HHHHH
Q psy5660 155 SCINK 159 (337)
Q Consensus 155 ~~~~~ 159 (337)
.+...
T Consensus 255 ~~~~~ 259 (365)
T 4eqf_A 255 ATLAN 259 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=9.8e-12 Score=102.25 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=89.8
Q ss_pred HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 60 Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
+-..|.+++..+|. ....++++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+|+++
T Consensus 6 ~~~~~~~al~~~p~----~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 6 GGGTIAMLNEISSD----TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp CCCSHHHHTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHh----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34568899999988 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q psy5660 140 LKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 140 l~l~P~~~~~~~~l~~~~~~ 159 (337)
++++|++..+...++.+...
T Consensus 82 l~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 82 AVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHSTTCTHHHHHHHHHHHH
T ss_pred HhcCCCCchHHHHHHHHHHH
Confidence 99999999999888888765
No 76
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=8.3e-12 Score=108.61 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=90.5
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
..+.-.+..+..+|..++..|+|++|+..|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..
T Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 92 (243)
T 2q7f_A 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----DAIPYINFANLLSSVNELERALAFYDKALELDSSAAT 92 (243)
T ss_dssp -------------------------CCTTHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH
Confidence 344567888999999999999999999999999999998 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+++.+|.++..+|++++|+..++++++++|.+..+...++.+...
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888877777654
No 77
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=2.2e-11 Score=107.00 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
..|...+..+...|..++..|++++|+.+|.+++...|. ...++.++|.++...|++++|+..++++++++|.+..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 106 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH
Confidence 456667899999999999999999999999999999887 4578889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFHLKKFEDCTHLCDELLK--ENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 115 a~~r~a~a~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~~ 159 (337)
+++.+|.++...|++++|+.+++++++ .+|.+..+...++.+...
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999998 777777777777666544
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=3.5e-11 Score=103.03 Aligned_cols=115 Identities=13% Similarity=0.019 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALK--LKPDYPKVKL 117 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~--l~P~~~ka~~ 117 (337)
+..+...|..++..|++++|+.+|.+++...|. ...++.++|.++..+ |++++|+..++++++ .+|.+..+++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 117 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL 117 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence 556777788888888888888888888887776 446777788888888 888888888888887 5566677778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|.++...|++++|+.+++++++.+|++..+...++.+...
T Consensus 118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 888888888888888888888888888777776666665543
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=4.1e-11 Score=102.57 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..++..|++++|+..|.++++..|. ...++.++|.++..+|++++|+..+++++.++|.+..+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 67889999999999999999999999999999998 45889999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHL-KKFEDCTHLCDELLK--ENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~l-g~~~eA~~~~~~al~--l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++... |++++|+..++++++ .+|.+..+...++.+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 99999999 999999999999999 566666777777666554
No 80
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.36 E-value=6.2e-12 Score=116.52 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..+++.|++++|+.+|++++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5678889999999999999999999999999998 458999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTD-----------STVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~-----------~~~~~~l~~~~~~ 159 (337)
|.++..+|++++|+.+++++++++|++ ..+...++.+...
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999999988 6777777776654
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.4e-11 Score=119.06 Aligned_cols=107 Identities=31% Similarity=0.386 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
+.+.+..++..|+.+++.|+|++|+..|++++..+|+ ..+|.++|.|++++|++++|+..++++++++|++..++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 76 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHH
Confidence 4678999999999999999999999999999999983 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
+.+|.++..+|++++|+..|+++++++|.+..
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999987643
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=2.2e-11 Score=106.94 Aligned_cols=116 Identities=17% Similarity=0.098 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK--LKPDYPKVKL 117 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~--l~P~~~ka~~ 117 (337)
.+..+...|..++..|++++|+..|.++++..|. ...++.++|.++..+|++++|+..+++++. .+|.+..+++
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 145 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH
Confidence 3567788889999999999999999999988887 457888889999899999999999999888 7888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+|.++...|++++|+.+++++++++|.+..+...++.+...
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999888888777777766554
No 83
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.6e-11 Score=108.36 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
.+..+...|..++..| ++++|+.+|.+++...|.+ ..+|.++|.++..+|++++|+..+++++++.|.+..+++.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY----GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 3566778888888888 8999999999999988874 4778889999999999999999999999999998888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.++...|++++|+..++++++++|++..+...++.+...
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999988887777776654
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=2.4e-11 Score=94.79 Aligned_cols=103 Identities=18% Similarity=0.331 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..++..|++++|+..|.+++...|. ...++.++|.++...|++++|+..++++++..|.+..+++.+
T Consensus 34 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 109 (136)
T 2fo7_A 34 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109 (136)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC----chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3567788999999999999999999999999987 457889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|.++...|++++|..++++++.++|++
T Consensus 110 a~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 110 GNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999864
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.31 E-value=1.3e-11 Score=120.31 Aligned_cols=121 Identities=23% Similarity=0.288 Sum_probs=101.9
Q ss_pred hhHHHhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660 20 PLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99 (337)
Q Consensus 20 ~~lealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al 99 (337)
|.+..+..+.. .+..+.+..+...|+.+++.|+|++|+.+|++++..+|+ +..+|.++|.|+.++|++.+|+
T Consensus 8 ~~~~~~~~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 79 (537)
T 3fp2_A 8 PDIAQLKGLSP----SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN----EPVFYSNISACYISTGDLEKVI 79 (537)
T ss_dssp CCHHHHTTSCH----HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred chHHhhcCCCc----chhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCCHHHHH
Confidence 44555555543 345578999999999999999999999999999999998 5699999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 100 ~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
..++++++++|++..+++.+|.++..+|++++|+..|+ ++.++|+....
T Consensus 80 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 99999999999999999999999999999999999996 88888876543
No 86
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.30 E-value=4.6e-11 Score=105.95 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=107.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+.-.+..+...|..+...|++++|+.+|.++++.+|.+ ..++.++|.++..+|++++|+..++++++++|.+..+
T Consensus 69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 144 (272)
T 3u4t_A 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR----LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144 (272)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence 333457789999999999999999999999999999984 4889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
++.+|...+..+++++|+..++++++++|++..+...++.+...
T Consensus 145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 188 (272)
T 3u4t_A 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA 188 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 99999555556699999999999999999998887777777654
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.30 E-value=5.4e-11 Score=107.91 Aligned_cols=116 Identities=10% Similarity=0.014 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..++..|++++|+..|.+++...|.+ ...+.++|.++..+|++++|+..++++++.+|.+..+++.+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 199 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC----HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45668888999999999999999999999988874 36677788899899999999999999999999888888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKEN---------PTDSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~---------P~~~~~~~~l~~~~~~ 159 (337)
|.++..+|++++|+..+++++++. |.+..+...++.+...
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999988876 5556666666666554
No 88
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.29 E-value=3.6e-11 Score=108.92 Aligned_cols=116 Identities=17% Similarity=0.176 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..++..|++++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 246 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM 246 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4677888999999999999999999999999987 457899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPT------------DSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~------------~~~~~~~l~~~~~~ 159 (337)
|.++..+|++++|+.+++++++++|+ +..+...++.+...
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 99999999999999999999999998 56666666665543
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.29 E-value=2.2e-11 Score=111.12 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFL-KNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~l-g~~~~Al~d~~~Al~l~P~ 111 (337)
+.+...+..+.+.|+.+.+.|+|++|+.+|++|+.+.+.. ....+.++.|+|.++... |++++|+..+++|+++.|.
T Consensus 71 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 71 GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 4566778999999999999999999999999999987743 223467899999999995 9999999999999999885
Q ss_pred C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 112 Y------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 112 ~------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
+ ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 4 567899999999999999999999999999988753
No 90
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.29 E-value=4.4e-11 Score=97.00 Aligned_cols=94 Identities=7% Similarity=-0.059 Sum_probs=85.3
Q ss_pred HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 62 INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 62 ~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
..|.+++..+|+ ....++++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+|++++.
T Consensus 5 ~~l~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 5 GTLAMLRGLSED----TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ----CCTTCCHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHH----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 467888888887 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH
Q psy5660 142 ENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 142 l~P~~~~~~~~l~~~~~~ 159 (337)
++|++..+...++.+...
T Consensus 81 ~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HCTTCTHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHH
Confidence 999999999888888765
No 91
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.29 E-value=6.2e-11 Score=92.19 Aligned_cols=84 Identities=12% Similarity=0.037 Sum_probs=79.7
Q ss_pred HHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 59 ~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
.|+..|.++++.+|+ ...++.++|.++..+|++++|+..+++|++++|.+..+++.+|.++..+|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQGTD----NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 588999999999998 4589999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCC
Q psy5660 139 LLKENPTD 146 (337)
Q Consensus 139 al~l~P~~ 146 (337)
+++++|.+
T Consensus 79 al~~~~~~ 86 (115)
T 2kat_A 79 GLAAAQSR 86 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 99998753
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.29 E-value=2.8e-11 Score=110.36 Aligned_cols=117 Identities=11% Similarity=0.046 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHH-----------------
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTD----------------- 101 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d----------------- 101 (337)
..+..+...|..++..|++++|+..|+++++.+|+ +..++.++|.+++.+|++++|+..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 45677788999999999999999999999999998 557888888888888888876544
Q ss_pred -----------------HHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q psy5660 102 -----------------CQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSCINK 159 (337)
Q Consensus 102 -----------------~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~~~~ 159 (337)
+++++.++|++..+++.+|.++...|++++|+..|+++++.+|++ ..+...+..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 455567788888888888888888888888888888888888887 6677766666554
No 93
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.1e-10 Score=89.42 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+..+.++|.++++.|+|.+|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
..
T Consensus 83 ~~ 84 (126)
T 3upv_A 83 IA 84 (126)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=1.4e-11 Score=112.34 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=101.3
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKC-NKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDC 102 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~-g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~ 102 (337)
+++.+.++.+.+...+..+.+.|..+... |++++|+.+|++|+++.|.+. ...+.++.|+|.++..+|+|++|+..+
T Consensus 102 ~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 181 (292)
T 1qqe_A 102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34555444466677789999999999997 999999999999999987542 223578999999999999999999999
Q ss_pred HHHHhhCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 103 QIALKLKPDYPK-------VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149 (337)
Q Consensus 103 ~~Al~l~P~~~k-------a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~ 149 (337)
++++++.|.+.. +++++|.|+..+|++++|+.+|+++++++|++...
T Consensus 182 ~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999987643 68899999999999999999999999999987653
No 95
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.28 E-value=1.3e-10 Score=106.26 Aligned_cols=113 Identities=8% Similarity=-0.063 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNF----FLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~----~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
...+...|..+.+.|++++|+..|+++++.+|++. ..+++.++. ..|++++|+..++++++.+|.++.++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT------LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 45677889999999999999999999999988732 233333322 34889999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+.+|.++..+|++++|+..++++++++|++..+...+..+...
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888766654
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=8.8e-11 Score=98.64 Aligned_cols=116 Identities=13% Similarity=-0.016 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN-FFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~-~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
..+..+...|..+...|++++|+..|.+++...| ++ .++..++.+. ...+....|+..++++++++|++..+++
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~ 112 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC 112 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch----HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence 6677888888888888888888888888888887 54 2223333332 2333444578889999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTD--STVIDLRTSCINK 159 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~~~~~ 159 (337)
.+|.++...|++++|+..|+++++++|+. ..+...+..+...
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 4577777666554
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.27 E-value=6.9e-12 Score=105.00 Aligned_cols=109 Identities=11% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHh
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC-LFH 125 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a-~~~ 125 (337)
.++.++..|+|++|+..|.+++...|. ...+|.++|.++..+|++.+|+..++++++++|.+..+++.+|.+ +..
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQ----NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCS----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 344567789999999999999999998 558999999999999999999999999999999999999999999 889
Q ss_pred cCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 126 LKKF--EDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 126 lg~~--~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.|++ ++|+.+++++++++|++..+...++.+...
T Consensus 92 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 127 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM 127 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999 999999999999999999998888887665
No 98
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.26 E-value=6e-10 Score=100.79 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 79 ~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
..++.++|.++..+|++++|+..++++++.+|.+..+++.+|.++...|++++|+..++++++++|++..+...++.+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888777777665
Q ss_pred H
Q psy5660 159 K 159 (337)
Q Consensus 159 ~ 159 (337)
.
T Consensus 252 ~ 252 (327)
T 3cv0_A 252 N 252 (327)
T ss_dssp H
T ss_pred H
Confidence 5
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=8e-11 Score=107.77 Aligned_cols=102 Identities=16% Similarity=0.131 Sum_probs=92.5
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK 128 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~ 128 (337)
+.+...|++++|+..|+++++..|+ ...++.++|.++.++|++++|+..+++|++++|+++.+++++|.++..+|+
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3334568999999999999999998 568999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 129 FED-CTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 129 ~~e-A~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+.+ +..+++++++++|+++.+..+..
T Consensus 250 ~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 250 PPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 986 56899999999999998877543
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=2.2e-10 Score=100.20 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH------------------ccCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF------------------LKNYRSCLTD 101 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~------------------lg~~~~Al~d 101 (337)
....+...|..+++.|+|++|+..|+++++..|+++. ...+++++|.++.. +|++++|+..
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 118 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD 118 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence 4578889999999999999999999999999998653 34578889999886 5799999999
Q ss_pred HHHHHhhCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH
Q psy5660 102 CQIALKLKPDYPKVK-----------------LRAAQCLFHLKKFEDCTHLCDELLKENPTDST---VIDLRTSCI 157 (337)
Q Consensus 102 ~~~Al~l~P~~~ka~-----------------~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~---~~~~l~~~~ 157 (337)
++++++..|++..+. +.+|.++...|++++|+..|+++++..|+++. +...++.+.
T Consensus 119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH
Confidence 999999999987554 67899999999999999999999999999874 344444443
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.24 E-value=2.6e-10 Score=100.91 Aligned_cols=107 Identities=20% Similarity=0.138 Sum_probs=98.8
Q ss_pred HhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy5660 53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDC 132 (337)
Q Consensus 53 k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA 132 (337)
..|+|++|+..|+++++..+.++...+.++.++|.++..+|++++|+..+++|++++|.+..+++.+|.++..+|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45789999999999999866555558899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 133 THLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 133 ~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+.+++++++++|++..+...++.+...
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 999999999999999888888887655
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=8.9e-11 Score=107.02 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
....+.++|..++..|++++|+..++++++++|++..+++.+|.++...|++++|+..+++++..+|++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~ 184 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch
Confidence 567889999999999999999999999999999999999999999999999999999988888877744
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=5.6e-11 Score=118.27 Aligned_cols=118 Identities=8% Similarity=0.016 Sum_probs=107.3
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+++..+| ..+..+...|..++..|++++|+.+|+++++.+|+ ...++.++|.++..+|++++|+..+++|
T Consensus 48 ~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 48 RGLALHP------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE----HPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp HHHTTST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566676 45788999999999999999999999999999998 5689999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 106 LKLKPDYPKVKLRAAQCLFHL---KKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 106 l~l~P~~~ka~~r~a~a~~~l---g~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
++++|++..+++.+|.++..+ |++++|+..++++++.+|++.....++
T Consensus 118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 999999999999999999999 999999999999999999875544333
No 104
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.23 E-value=1.1e-10 Score=86.06 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+...|..++..|+|++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..++..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34555556666666666666666666666666555 33555566666666666666666666666666666666666
Q ss_pred HHHHHHhc
Q psy5660 119 AAQCLFHL 126 (337)
Q Consensus 119 ~a~a~~~l 126 (337)
+|.++..+
T Consensus 83 l~~~~~~~ 90 (91)
T 1na3_A 83 LGNAKQKQ 90 (91)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66655544
No 105
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.22 E-value=1.8e-11 Score=92.40 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQ-LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~-~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
.++|..+++.|+|++|+..|+++++..|. ... ++.++|.++..+|++++|+..+++|++++|++..++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV----GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS----THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 46788888888999999999999888887 446 88888999888899999999999999999888887754
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 124 FHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+.+.+|+..|++++..+|++.
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCCS
T ss_pred ---HHHHHHHHHHHHHhccCcccc
Confidence 567778888888877777653
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.21 E-value=5.7e-11 Score=110.99 Aligned_cols=98 Identities=15% Similarity=0.252 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+.+.|..+++.|+|++|+.+|+++|+++|+ +..+|+++|.++..+|+|++|+.++++|++++|++..++..+
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l 270 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 3789999999999999999999999999999998 568999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHH-HHHHHHHHh
Q psy5660 120 AQCLFHLKKFEDC-THLCDELLK 141 (337)
Q Consensus 120 a~a~~~lg~~~eA-~~~~~~al~ 141 (337)
|.++..+|++++| ...|++++.
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 456666654
No 107
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.20 E-value=2.3e-10 Score=111.38 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA 120 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a 120 (337)
+..+...|..++..|++++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+|
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 351 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 566778888888888888899889888888887 4578899999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 121 QCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++..+|++++|+..++++++++|++..+...++.+...
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999998888887777655
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.19 E-value=2.6e-10 Score=91.01 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
.+.++.|+|.++++.|+|++|+..+++||+++|++..+|+++|.++..+|++++|+.+|+++++++|++..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 67889999999999999999999999999999999999999999999999999999999999999987743
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.19 E-value=1.3e-10 Score=94.92 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=93.4
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+++..+| ..+..+...|..++..|+|++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++
T Consensus 38 ~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 38 QAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp HHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455565 34778889999999999999999999999999998 5689999999999999999999999999
Q ss_pred HhhCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 106 LKLKPDYPKVKLRA--AQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 106 l~l~P~~~ka~~r~--a~a~~~lg~~~eA~~~~~~al~l 142 (337)
++++|.+..++..+ +..+...|++++|+..+.++..+
T Consensus 108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999888554 44588899999999999887654
No 110
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.19 E-value=2.7e-10 Score=100.62 Aligned_cols=122 Identities=23% Similarity=0.184 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----- 108 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----- 108 (337)
...+..+...|..++..|+|++|+.+|.+++.... .+......++.++|.++..+|++++|+..+.+|+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999998741 123347889999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Q psy5660 109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--------NPTDSTVIDLRTSCINK 159 (337)
Q Consensus 109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~~ 159 (337)
+|....+++.+|.++..+|++++|+.++++++++ +|....+...++.+...
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999998 55555566666666543
No 111
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.19 E-value=1.7e-10 Score=114.03 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC-
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDY- 112 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~- 112 (337)
.+..+...|..+.+.|++++|+..|+++++..|. ...+|.++|.++.+.|++++|+..+++++++ +|.+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQY----DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 3456667777777777777777777777777776 3466777777777777777777777777777 5554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..++..+|.++...|++++|+..++++++++|++..+...+..+...
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777766554
No 112
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=2.6e-10 Score=109.59 Aligned_cols=121 Identities=8% Similarity=0.001 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-- 109 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-- 109 (337)
....+..|...|.+++..|+|++|+++|++|+++.+.. .......|.|+|.+|..+|+|.+|+.++++|+++.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 33557788899999999999999999999999873210 11256889999999999999999999999999873
Q ss_pred ------CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 110 ------PDYPKVKLRAAQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 110 ------P~~~ka~~r~a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+....++...|.++..+| +|++|+.+|+++++++|+++.+...+..+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356788889998887764 699999999999999999998877666553
No 113
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.16 E-value=6.3e-10 Score=81.81 Aligned_cols=80 Identities=13% Similarity=0.249 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+.++.++|.++...|++.+|+..+++|++++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999998888777664
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.16 E-value=2.6e-10 Score=103.67 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=90.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---- 108 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---- 108 (337)
......+..+...|..++..++|++|+.+|.+|+...+. +......++.|+|.++..+|+|++|+..+++|++.
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 188 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL 188 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 444567777778888888888888888888888875433 23335667888888888888888888888888842
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660 109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK 159 (337)
Q Consensus 109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~ 159 (337)
.+....+++++|.++..+|+|++|+.++++++++.+.. ..+...++.+...
T Consensus 189 ~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 22334677888888888888888888888888775433 4556666666654
No 115
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.16 E-value=1e-09 Score=88.18 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+.+...+..+...|..++..|+|++|+.+|.+++...+. +....+.++.++|.++..+|++++|+..+++|+.+.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999998653 344466799999999999999999999999999986543
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
..+++.+|.++..+|++++|+.++++++++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999874
No 116
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=4.2e-10 Score=103.15 Aligned_cols=122 Identities=11% Similarity=0.017 Sum_probs=100.7
Q ss_pred HHhhccccCCCCCChHHHHHHHHHHHHHHHH-------hCcH-------HHHHHHHHHHHc-cccCCchHHHHHHHHHHH
Q psy5660 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFK-------CNKY-------RNAIINYTEGLK-IKCADNDVNAQLYNNRAA 87 (337)
Q Consensus 23 ealqaL~~dp~~~~~~e~A~~~k~~Gn~~~k-------~g~y-------~~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~ 87 (337)
..-+++..+| ..+..+...|..+.. .|++ ++|+..|++|+. +.|+ ...+|.++|.
T Consensus 38 ~~~~al~~~p------~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----~~~~~~~~~~ 107 (308)
T 2ond_A 38 AYEQCLLVLG------HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----CHHHHHHHHH
T ss_pred HHHHHHHHcC------CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----cHHHHHHHHH
Confidence 3445666676 566777777777653 4775 899999999999 6887 5578999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 88 SNFFLKNYRSCLTDCQIALKLKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 88 ~~~~lg~~~~Al~d~~~Al~l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
++..+|++++|+..+++|++++|.+.. +|..+|.++...|++++|...|+++++++|.+..+.....
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 175 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 175 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999886 8999999999999999999999999999988766654333
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=2.8e-10 Score=103.53 Aligned_cols=126 Identities=14% Similarity=0.101 Sum_probs=93.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH---hh
Q psy5660 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL---KL 108 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al---~l 108 (337)
.......+..+...|..+...|+|++|+.+|.+|+...+. +......+|.++|.++..+|+|++|+..+++|+ +.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~ 187 (293)
T 2qfc_A 108 HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA 187 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 3444466666777888888888888888888888876443 233346788888888888888888888888888 55
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660 109 KPDYP----KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK 159 (337)
Q Consensus 109 ~P~~~----ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~ 159 (337)
.|.+. .+++++|.++..+|+|++|+.++++++++.+.. ..+...++.+...
T Consensus 188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~ 248 (293)
T 2qfc_A 188 LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 66543 688888888888888888888888888775321 4455666666554
No 118
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.15 E-value=2.7e-10 Score=94.98 Aligned_cols=99 Identities=17% Similarity=0.270 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD-------YPK-----VKLRAAQCLFHLKKFEDCTHLCDELLKE--- 142 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~-------~~k-----a~~r~a~a~~~lg~~~eA~~~~~~al~l--- 142 (337)
.+..+.|+|.+++++|+|++|+..|++||+++|+ +.. +|.++|.|+..+|+|++|+.+|+++|++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4577899999999999999999999999999999 554 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5660 143 ----NPTDSTVI----DLRTSCINK---HKEILRNERKQAQQVKK 176 (337)
Q Consensus 143 ----~P~~~~~~----~~l~~~~~~---~~~~~~~~~k~~~~~~~ 176 (337)
+|++..++ ..++.+... ..++...+.+.......
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999988 888888766 44455555665554443
No 119
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.15 E-value=6.9e-10 Score=104.48 Aligned_cols=122 Identities=12% Similarity=0.210 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCC
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPD 111 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~ 111 (337)
...+..+...|..++..|+|++|+.+|+++++..|.++...+.++.++|.++..+|++++|+..+++|+.+ +|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 47788889999999999999999999999999999988777889999999999999999999999999998 677
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q psy5660 112 YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE------NPTDSTVIDLRTSCINK 159 (337)
Q Consensus 112 ~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l------~P~~~~~~~~l~~~~~~ 159 (337)
...+++.+|.++..+|++++|+.++++++++ .|....+...++.+...
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998 33334455555555443
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.14 E-value=2.4e-09 Score=84.90 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+..+.++|.+++..|+|.+|+..+++++.++|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
..
T Consensus 88 ~~ 89 (137)
T 3q49_B 88 LE 89 (137)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 121
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.14 E-value=5.9e-10 Score=85.03 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.+..+.++|.+++..|+|.+|+..+++|++++|.+..+++++|.++..+|++++|+.+|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999998
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.13 E-value=1.3e-09 Score=90.14 Aligned_cols=83 Identities=12% Similarity=0.050 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
..+..+.++|.+++..|+|++|+..+++|++++|.+..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHH
Q psy5660 157 INK 159 (337)
Q Consensus 157 ~~~ 159 (337)
...
T Consensus 89 ~~~ 91 (164)
T 3sz7_A 89 RFD 91 (164)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.12 E-value=1.3e-09 Score=99.76 Aligned_cols=125 Identities=13% Similarity=-0.012 Sum_probs=107.5
Q ss_pred hccc-cCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 26 QQLK-YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 26 qaL~-~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
+++. .+| ..+..+...|..+.+.|++++|...|+++++..|.+.. .+|.++|.++.++|++++|+..+++
T Consensus 89 rAl~~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 89 RAISTLLK------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHTTTTT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhCc------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4566 566 55678899999999999999999999999999998542 2899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 105 ALKLKPDYPKVKLRAAQCLFH-LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 105 Al~l~P~~~ka~~r~a~a~~~-lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|++.+|.+..++...|..... +|++++|...|+++++++|++..+...+..+...
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999998888866666443 7999999999999999999998888777766543
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.11 E-value=5.5e-11 Score=115.82 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=93.7
Q ss_pred hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHH
Q psy5660 54 CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---------------PKVKLR 118 (337)
Q Consensus 54 ~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---------------~ka~~r 118 (337)
.++|++|+..|.+++..+|. .+..|.++|.+++++|+|.+|+..|++|++++|.+ ..+|++
T Consensus 247 l~~~~~A~~~~~~~~~~~~~----~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLE----QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 35677888888888888877 78999999999999999999999999999999998 799999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|.|+..+|+|++|+.+|+++++++|++..+...++.+...
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~ 363 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL 363 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888887765
No 125
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=2.5e-10 Score=104.83 Aligned_cols=119 Identities=12% Similarity=0.056 Sum_probs=94.1
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
++...++.+.+...+..+.+.|..+.. |+|++|+.+|++|+++.+.. ......++.|+|.++..+|+|++|+..+++
T Consensus 102 Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 102 ASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344432345666778888899999888 99999999999999887643 223467888999999999999999999999
Q ss_pred HHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 105 ALKLKPDY------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 105 Al~l~P~~------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
|+.+.|.+ ..+++.+|.++..+|++++|+.+|++++ ++|+..
T Consensus 181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 99886644 3477888889999999999999999999 888754
No 126
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=2e-09 Score=85.12 Aligned_cols=80 Identities=10% Similarity=-0.057 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..+.++|.++++.|++.+|+..+++|++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999998888877654
No 127
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.11 E-value=3.3e-10 Score=109.26 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchH--HHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV--NAQLYNNRAASNFF---LKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~--~~~~~~nra~~~~~---lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+...|..+++.|++++|+..|.+++...|.++.. ...++.++|.++.. +|++++|+..+++++.++|++..+++.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3444444444444444444444444444432210 01244445555554 455555555555555555555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
+|.++..+|++++|+.+++++++++|++..+..
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 555555555555555555555555554444433
No 128
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.11 E-value=1.5e-09 Score=107.19 Aligned_cols=116 Identities=11% Similarity=-0.020 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..+.+.|++++|+..|.++++..|. ....|.++|.++.+.|++++|+..++++++.+|.+..++..+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ----FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3455666677777777777777777777776665 345666677777777777777777777777777777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|.++...|++++|+..++++++++|.+..+...+..+...
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7777777777777777777777777666665555555433
No 129
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=1.9e-09 Score=101.25 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD---NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD 111 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~---~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~ 111 (337)
..+...+..+...|..++..|++..|+.+|.+|+++.+.. ....+.++.++|.++..+|+|++|+..+++|+++.+.
T Consensus 137 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 137 KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999986543 2346789999999999999999999999999988654
Q ss_pred CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----C-CCCHHHHHHHHHHHHH
Q psy5660 112 YP------KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----N-PTDSTVIDLRTSCINK 159 (337)
Q Consensus 112 ~~------ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~-P~~~~~~~~l~~~~~~ 159 (337)
.. .+++++|.++..+|++++|+.++++++++ + |....+...++.+...
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 32 58899999999999999999999999994 5 6666667777776654
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.10 E-value=4.3e-11 Score=117.36 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=98.2
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
+.+++..+| ..+..+.+.|..+++.|+|++|+.+|++|++++|+ .+.+|.|+|.++..+|++++|+..++
T Consensus 29 ~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~g~~~eA~~~~~ 98 (477)
T 1wao_1 29 YSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----YIKGYYRRAASNMALGKFRAALRDYE 98 (477)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344677777 45889999999999999999999999999999998 56899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhhCCCC
Q psy5660 104 IALKLKPDYPKVKLRAAQC--LFHLKKFEDCTHLCD-----------ELLKENPTD 146 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a--~~~lg~~~eA~~~~~-----------~al~l~P~~ 146 (337)
+|++++|++..++..++.+ +...|++++|++.++ +++.++|+.
T Consensus 99 ~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 99 TVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999999999988 889999999999999 888887764
No 131
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.10 E-value=6.1e-10 Score=104.74 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-----LK 109 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~ 109 (337)
....+..+...|..+...|+|++|+.+|.+|++..+. +....+.++.|+|.++..+|++++|+..+++|++ .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 5678899999999999999999999999999998653 3445678999999999999999999999999999 46
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 110 -PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 110 -P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
|....+++.+|.++..+|++++|+.++++++++.+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999843
No 132
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.09 E-value=2e-09 Score=97.01 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDYP 113 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~~ 113 (337)
.+..+...|..++..|+|++|+.+|+++++..|.++.....++.++|.++..+|++.+|+..+++|+.+ .|...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 456778899999999999999999999999999987777889999999999999999999999999988 55667
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.++..+|.++..+|++++|+..+++++++.+..
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999886543
No 133
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.09 E-value=2.9e-10 Score=86.74 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
.+.++.++|.+++.+|+|++|+..+++|++++|++..+|+.+|.++..+|++++|+.+|++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 56889999999999999999999999999999999999999999999999999999999999988654
No 134
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.6e-09 Score=95.60 Aligned_cols=105 Identities=23% Similarity=0.204 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----- 108 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----- 108 (337)
...+..+...|+.++..|++++|+.+|.+++.... .+......++.++|.++..+|++++|+..+++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 47788999999999999999999999999999831 112237889999999999999999999999999999
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 ---KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 ---~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.|....++..+|.++..+|++++|+.++++++++
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999987
No 135
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.08 E-value=6.7e-10 Score=103.64 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCC
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDY 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~ 112 (337)
..+..+...|..++..|+|++|+.+|++++...|.++...+.++.++|.++..+|++.+|+..+++|+.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4567788999999999999999999999999999887777889999999999999999999999999988 4556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
..+++.+|.++..+|++++|+.++++++++.|.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 119 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 119 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999998664
No 136
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=1.1e-09 Score=103.03 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-----LK 109 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~ 109 (337)
+...+..+...|..+...|+|++|+.+|.+|++..+ .+....+.++.|+|.++..+|++++|+..+++|+. .+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 457899999999999999999999999999999754 34445788999999999999999999999999999 78
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 110 PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 110 P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
|....+++.+|.++..+|++++|+.++++++++.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999998543
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=7.7e-10 Score=110.78 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=113.4
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc--C
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNK----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK--N 94 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg--~ 94 (337)
+|..+| +....+..+|..+.+.|+ |++|+.+|.++++.+|. +..+|++|+.+..+++ +
T Consensus 55 ~l~~nP------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK----~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 55 ILGANP------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHCT------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHCc------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccccc
Confidence 455666 667888899999998888 99999999999999999 6799999999999999 7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+++|+..|.++++++|+|..||..++.++..+| .+++|+++++++++.+|.|..+...+..+...
T Consensus 125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 799999999999999999999999999999999 99999999999999999999999888887654
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.07 E-value=1.7e-10 Score=105.97 Aligned_cols=111 Identities=10% Similarity=0.024 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+.+...+..+.+.|+.+.+.|+|++|+.+|.+|+++.+. +....+.++.|+|.++.. |++++|+..+++|+.+.|..
T Consensus 70 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 445566777778888888888888888888888777432 233346677788888877 88888888888888776543
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
..++.++|.++..+|++++|+.+|++++++.|.+
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 4677778888888888888888888888776543
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.07 E-value=2.6e-09 Score=88.08 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKL------------------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------------------~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
.+..+.++|.++++.|+|.+|+..+.+|+.+ +|.+..+|+++|.|+..+|++++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5678999999999999999999999999999 7888899999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy5660 140 LKENPTDSTVIDLRTSCINK---HKEILRNERKQAQQVKK 176 (337)
Q Consensus 140 l~l~P~~~~~~~~l~~~~~~---~~~~~~~~~k~~~~~~~ 176 (337)
++++|++..+...++.+... ..++.....+.......
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99999999999999988776 33334444444444333
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=1.4e-10 Score=108.50 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+.+.|..+++.|+|++|+.+|+++|+++|+ +..+|+++|.++..+|+|++|+.++++|++++|++..++..++.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~ 306 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 37889999999999999999999999999998 56899999999999999999999999999999999999999998
Q ss_pred H-HHhcCCHHHHHHHHHHHHhhCCCCHH
Q psy5660 122 C-LFHLKKFEDCTHLCDELLKENPTDST 148 (337)
Q Consensus 122 a-~~~lg~~~eA~~~~~~al~l~P~~~~ 148 (337)
+ ....+..+.+...|++++...|++..
T Consensus 307 l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 307 LAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 8 45567888999999999999998754
No 141
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.6e-09 Score=98.74 Aligned_cols=117 Identities=10% Similarity=-0.066 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhhC
Q psy5660 39 ELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN----FFL---KNYRSCLTDCQIALKLK 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~----~~l---g~~~~Al~d~~~Al~l~ 109 (337)
+....+..+|..+...| ++++|+.++.++|..+|. +..+|.+|+.+. ..+ +++.+++..|.++++.+
T Consensus 65 ~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~ 140 (306)
T 3dra_A 65 SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD 140 (306)
T ss_dssp TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence 55667788888888888 899999999999999888 458888898888 666 78889999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 110 PDYPKVKLRAAQCLFHLKKFE--DCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 110 P~~~ka~~r~a~a~~~lg~~~--eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|+|..+|..++.++..+|+++ +++++++++++++|.|-.+...+..+...
T Consensus 141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999888 99999999999999998888777766544
No 142
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.04 E-value=2.9e-10 Score=94.62 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=71.5
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKY----------RNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y----------~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg 93 (337)
+-+++..+| ..++.+.+.|+.+...+++ ++|+.+|++||+++|+ ...+|+|+|.+|..+|
T Consensus 25 ~~~Ai~l~P------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~----~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 25 AENTYKSNP------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK----KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC----cHHHHHHHHHHHHHhc
Confidence 444677788 7889999999999998875 5999999999999999 6799999999999885
Q ss_pred -----------CHHHHHHHHHHHHhhCCCCH
Q psy5660 94 -----------NYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 94 -----------~~~~Al~d~~~Al~l~P~~~ 113 (337)
++++|+..|++|++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 89999999999999999975
No 143
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.03 E-value=1e-09 Score=88.23 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD- 111 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~- 111 (337)
..+...+..+...|..++..|++++|+.+|.+++...+. ++.....++.++|.++..+|++++|+..+++++.+.+.
T Consensus 43 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 43 GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 456677889999999999999999999999999987653 34446789999999999999999999999999987432
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 112 -----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 112 -----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
...++..+|.++..+|++++|+.++++++++...
T Consensus 123 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 123 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2578899999999999999999999999987543
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.02 E-value=1.1e-09 Score=85.01 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
.+..+...|..++..|++++|+.+|.+++...|. ...++.++|.++..+|++++|+..++++++++|.+..+++.+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 120 (131)
T 2vyi_A 45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120 (131)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4678889999999999999999999999999998 458899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH
Q psy5660 120 AQCLFHLKKF 129 (337)
Q Consensus 120 a~a~~~lg~~ 129 (337)
|.++..+|++
T Consensus 121 ~~~~~~~~~~ 130 (131)
T 2vyi_A 121 KIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 145
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.02 E-value=6.9e-09 Score=93.02 Aligned_cols=105 Identities=16% Similarity=0.062 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC----CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA----DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------ 108 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~----~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------ 108 (337)
..+..+...|..++..|++++|+.+|+++++.... +......++.++|.++..+|++++|+..+++|+.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 67778888888888888888888888888875211 22336677888888888888888888888888877
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 109 --KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 109 --~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.|....+++.+|.++..+|++++|+.++++++++.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 35566788888888888888888888888888773
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.02 E-value=7.9e-09 Score=93.79 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND--VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---- 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---- 112 (337)
+....+.+++..++..|+|++|+..|.++++..+.... .....+.++|.++...|++++|+..+++|+.+.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 44555566666666666666666666666665544332 233444556666666666666666666666554332
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy5660 113 --PKVKLRAAQCLFHLKKFEDCTHLCDELL 140 (337)
Q Consensus 113 --~ka~~r~a~a~~~lg~~~eA~~~~~~al 140 (337)
..++..+|.++..+|++++|+.+|++++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666666666666666666666
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.02 E-value=4.1e-09 Score=89.02 Aligned_cols=105 Identities=9% Similarity=0.029 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---CC---
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---KP--- 110 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---~P--- 110 (337)
..+..+...|..++..|+|++|+.+|.+++..... +....+.++.++|.++..+|++++|+..+++|+.+ .+
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 56889999999999999999999999999995432 33347889999999999999999999999999998 34
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 111 -DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 111 -~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
....+++.+|.++..+|++++|+.++++++.+.
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 235778999999999999999999999999874
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.01 E-value=1.1e-09 Score=93.34 Aligned_cols=108 Identities=11% Similarity=-0.001 Sum_probs=86.2
Q ss_pred HHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--------------
Q psy5660 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP-------------- 113 (337)
Q Consensus 48 Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~-------------- 113 (337)
|......|.|+.|.+.|.......+. .+..+.++|.+++..|+|.+|+..+++|+.+.|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQ----SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp -----------CCCSGGGCCHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 33344456677777777655554444 678899999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 114 --KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 114 --ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+++++|.++..+|++++|+.+|+++++++|++..+...++.+...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998888887655
No 149
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.01 E-value=1.6e-08 Score=94.14 Aligned_cols=125 Identities=13% Similarity=0.139 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+.+...+..+...|..++..|+|++|+.+|.+++...+.. ....+.++.++|.++..+|++++|+..+++++.+.|..
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 3455778899999999999999999999999999987643 33456699999999999999999999999999998766
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy5660 113 ------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD------STVIDLRTSCINK 159 (337)
Q Consensus 113 ------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~------~~~~~~l~~~~~~ 159 (337)
..++..+|.++..+|++++|+.++++++++.+.. ..+...++.+...
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999986543 3344555555443
No 150
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=3.7e-09 Score=79.44 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=65.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
.++|.+++..|+|.+|+..++++++.+|.+.. +++.+|.++..+|++++|+.+|+++++++|++..+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 57899999999999999999999999999999 999999999999999999999999999999998776
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=4.4e-09 Score=98.80 Aligned_cols=121 Identities=13% Similarity=-0.052 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc---hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN---DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP--- 110 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~---~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P--- 110 (337)
+...+..+...|..++..|++..|+.+|.+|++..+... ...+.++.++|.++..+|+|++|+..+.+|+++.+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 445566666666666666666666666666666544321 12455666666666666666666666666666522
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHH
Q psy5660 111 ---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLK-----ENPTDSTVIDLRTSCI 157 (337)
Q Consensus 111 ---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~-----l~P~~~~~~~~l~~~~ 157 (337)
....++.++|.++..+|++++|+.+++++++ .+|....+...++.+.
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 1134556666666666666666666666666 4444444444444443
No 152
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=5.3e-09 Score=94.94 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY- 112 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~--~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~- 112 (337)
+..+....+.+.+..++..|+|++|+..|.+++...+..+... ...+.++|.++...|++++|+..+++|+.+.+..
T Consensus 70 ~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~ 149 (293)
T 3u3w_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS
T ss_pred CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc
Confidence 3346777788888889999999999999999998887766654 4556668888888889999999999998865432
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
..++..+|.++..+|++++|+.+|++++++
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 347888899999999999999999998853
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=1.1e-08 Score=79.89 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
.....+.++|.+++..|++.+|+..++++++.+|.+..+++.+|.++..+|++++|+.+++++++++|++..+...++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHH
Q psy5660 157 INK 159 (337)
Q Consensus 157 ~~~ 159 (337)
...
T Consensus 94 ~~~ 96 (133)
T 2lni_A 94 LEA 96 (133)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 154
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=4.1e-09 Score=94.52 Aligned_cols=122 Identities=23% Similarity=0.215 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK---- 109 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~---- 109 (337)
...+..+...|..++..|++++|+.+|.+++.... .+......++.++|.++..+|++++|+..+++++++.
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999998741 1223478899999999999999999999999999884
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Q psy5660 110 ----PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--------NPTDSTVIDLRTSCINK 159 (337)
Q Consensus 110 ----P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--------~P~~~~~~~~l~~~~~~ 159 (337)
|....++..+|.++...|++++|+.++++++++ +|....+...++.+...
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 666789999999999999999999999999998 44445555666665543
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=9e-10 Score=100.06 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=92.6
Q ss_pred hccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 26 qaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+++..+| ..+..+.+.|..+++.|+|++|+..|+++++++|+ +..+++++|.++..+|++++|+..+++|
T Consensus 29 ~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 29 RAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566676 45788999999999999999999999999999998 5689999999999999999999999999
Q ss_pred HhhCCCCH-------HHHHHHHH----------------------HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 106 LKLKPDYP-------KVKLRAAQ----------------------CLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 106 l~l~P~~~-------ka~~r~a~----------------------a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
++++|++. ...++.+. ..+..|++++|++.++++++++|++..+...+
T Consensus 99 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l 175 (281)
T 2c2l_A 99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQ 175 (281)
T ss_dssp HHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred HHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHH
Confidence 99998652 11111111 11135677888888888888888776555444
No 156
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=1.3e-09 Score=85.19 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
..+..+...|..++..|+|++|+.+|+++++..|+ ...++.++|.|+..+|++++|+..+++++..+|++.....
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN----HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78899999999999999999999999999999999 4689999999999999999999999999999999986543
No 157
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=9.9e-10 Score=92.11 Aligned_cols=82 Identities=15% Similarity=-0.038 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCHHHHH
Q psy5660 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r~a~a~~~lg~~~eA~ 133 (337)
....|+..|.++++.+|+ +..++.++|.++..+|++++|+..++++++++|.+ ..++..+|.++..+|+.++|+
T Consensus 89 ~~~~a~~~~~~al~~~P~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD----NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred ccchHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 344689999999999998 56899999999999999999999999999999986 569999999999999999999
Q ss_pred HHHHHHHh
Q psy5660 134 HLCDELLK 141 (337)
Q Consensus 134 ~~~~~al~ 141 (337)
..|+++|.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.1e-08 Score=93.08 Aligned_cols=108 Identities=9% Similarity=-0.074 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PD-YPKVKLRA 119 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~-~~ka~~r~ 119 (337)
.....|..+++.|+|.+|+.++++++... ++.....+++++|.++..+|++++|+..+++|+.-. |. ...+++++
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~ 214 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYL 214 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 77889999999999999999998776643 222235688889999999999999999999998654 55 66789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 120 a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
|.|+..+|+.++|...+++++..+|+ ..+...+
T Consensus 215 glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 215 AMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 99999999999999999999999998 6655443
No 159
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.95 E-value=4.3e-09 Score=100.99 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHH---hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCH
Q psy5660 41 ATTYKDEGNFNFK---CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 41 A~~~k~~Gn~~~k---~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ 113 (337)
+..+...|+.++. .+++++|+..|.+|++++|. ...++.++|.++.. .|++.+|+..+++|+.++|.+.
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~----~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~ 247 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD----NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS----CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc----chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH
Confidence 3344444544433 24455666666666666665 33556666665544 4677889999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.++..+|.++...|++++|+..++++++++|++..+...++.+..
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887776654
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.94 E-value=2.9e-09 Score=100.94 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
..+..+.+.|..+++.|+|++|+.+|++|++++|+ ++.+|+++|.++..+|+|++|+.++++|++++|++..++..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS----NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56788899999999999999999999999999998 56899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHL 135 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~ 135 (337)
++.++..++++++|.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998888654
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=1.6e-08 Score=94.39 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=112.5
Q ss_pred hHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHccccCCchHHHHHHHHHHHHH
Q psy5660 21 LVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNK----------YRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89 (337)
Q Consensus 21 ~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~----------y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~ 89 (337)
.|++.. +|..+| +....+..+|..+...++ +.+++.++..++..+|. +..+|++|+.+.
T Consensus 49 aL~~t~~~L~~nP------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK----ny~aW~hR~wlL 118 (331)
T 3dss_A 49 VLELTSQILGANP------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK----SYGTWHHRCWLL 118 (331)
T ss_dssp HHHHHHHHHTTCT------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Confidence 455444 466777 666777777777766655 79999999999999999 679999999999
Q ss_pred HHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 90 FFLK--NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK-FEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 90 ~~lg--~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~-~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..++ .+.+++..|.++++++|+|..||..++.+...+|. ++++++++.++++.+|.|..+...+..+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999 49999999999999999999999999999999999 6999999999999999999998888877654
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=4.5e-08 Score=75.05 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
...++.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...|++++|+.+++++++++|.+..+...++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988887777766
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
..
T Consensus 88 ~~ 89 (125)
T 1na0_A 88 YK 89 (125)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 163
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=6.8e-09 Score=95.95 Aligned_cols=117 Identities=7% Similarity=-0.070 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHH----HHh---CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhC
Q psy5660 39 ELATTYKDEGNFN----FKC---NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR--SCLTDCQIALKLK 109 (337)
Q Consensus 39 e~A~~~k~~Gn~~----~k~---g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~--~Al~d~~~Al~l~ 109 (337)
+....+..+|..+ ... +++.+++.++.++++.+|. +..+|++|+.+..++|.+. +++..|.++++.+
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK----NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 5566777778777 555 7899999999999999999 6799999999999999999 9999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 110 PDYPKVKLRAAQCLFHLKK------FEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 110 P~~~ka~~r~a~a~~~lg~------~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
|.|..||..++.++..+++ ++++++++++++.++|+|..+...+..+...
T Consensus 177 ~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 177 LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306)
T ss_dssp TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 9999999999999999998 9999999999999999999998877776654
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.93 E-value=3.4e-08 Score=75.09 Aligned_cols=82 Identities=9% Similarity=0.065 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.+..+.++|.+++..|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..++++++++|++..+...++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred HH
Q psy5660 158 NK 159 (337)
Q Consensus 158 ~~ 159 (337)
..
T Consensus 83 ~~ 84 (118)
T 1elw_A 83 EF 84 (118)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.92 E-value=4.6e-09 Score=79.42 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT--DSTVIDLRTS 155 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~ 155 (337)
...++.++|.++...|++.+|+..++++++++|.+..+++.+|.++..+|++++|+.+++++++++|+ +..+...++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999 8888877777
Q ss_pred HHHH
Q psy5660 156 CINK 159 (337)
Q Consensus 156 ~~~~ 159 (337)
+...
T Consensus 85 ~~~~ 88 (112)
T 2kck_A 85 ALRY 88 (112)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6543
No 166
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.92 E-value=3.7e-08 Score=87.76 Aligned_cols=108 Identities=8% Similarity=-0.015 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+..+...|..++..|++++|+.+|+++++ ++ ...++.++|.++.. .+++++|+..+++|++++ ++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 345566666666666677777777766666 32 23556666666666 666666666666666664 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 116 ~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
++.+|.++.. .+++++|+.+|+++++. ++..+...++.+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHH
Confidence 6666666666 66666666666666665 2555555555544
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=4.1e-09 Score=105.53 Aligned_cols=122 Identities=10% Similarity=-0.020 Sum_probs=110.7
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQ 103 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~ 103 (337)
+|..+| +...++..+|..+.+.+ +|++|+.+|.++++.+|. +..+|++|+.+..++| .+++++.++.
T Consensus 99 ~l~~~p------K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~----N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 99 CLRVNP------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHCT------TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHhCC------CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc----cccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 355677 77888999999999999 779999999999999999 6799999999999999 9999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 104 IALKLKPDYPKVKLRAAQCLFHL--------------KKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 104 ~Al~l~P~~~ka~~r~a~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++|+.+|.|..||..++.++..+ +.+++|++++++++.++|+|..+...+..+..
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 99999999999999999999886 67899999999999999999999887766543
No 168
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.92 E-value=1e-08 Score=96.31 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=98.1
Q ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 27 aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
++..+| ..+...+..+...|..++..|+|++|+.+|.++++... .+......++.++|.++..+|++.+|+..+++
T Consensus 74 al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (411)
T 4a1s_A 74 AIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151 (411)
T ss_dssp HHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555 56667788999999999999999999999999998731 22234778999999999999999999999999
Q ss_pred HHhh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhhC
Q psy5660 105 ALKL------KPDYPKVKLRAAQCLFHLKK-----------------FEDCTHLCDELLKEN 143 (337)
Q Consensus 105 Al~l------~P~~~ka~~r~a~a~~~lg~-----------------~~eA~~~~~~al~l~ 143 (337)
|+.+ .|....++..+|.++..+|+ +++|+.++++++++.
T Consensus 152 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 152 HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9998 66677899999999999999 999999999998874
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=1.2e-08 Score=95.70 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 41 ATTYKDEGNFNFKCN-KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-K-NYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g-~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-g-~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
...+..+|..+...| .+++|+.+++++|..+|. +..+|++|+.+...+ + ++.+++..|.++++.+|+|..||.
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK----ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK----SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 344445555555555 355555555555555555 445555555555555 4 555555555555555555555555
Q ss_pred HHHHHHHhcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFE--------DCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 118 r~a~a~~~lg~~~--------eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
.++.++..+|+++ +++++++++++++|.|..+...+..+.
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555 555555555555555555555554443
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.90 E-value=5.3e-08 Score=95.66 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc-----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----C
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIK-----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----K 109 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~-----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~ 109 (337)
.+....+.+..+..+|+|++|+..|.++++.. ++. ...+..+.|+|.+|..+|+|++|+..+++||.+ .
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~H-p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTN-LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35556677777888999999999999999863 332 237889999999999999999999999999986 4
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHH
Q psy5660 110 PDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTS 155 (337)
Q Consensus 110 P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~ 155 (337)
|+++ .++.++|.+|..+|++++|+..|++++.+ .|+++....++..
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 5554 77889999999999999999999999976 6888776665533
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=2e-08 Score=84.71 Aligned_cols=109 Identities=7% Similarity=-0.054 Sum_probs=93.8
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc---ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI---KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP- 110 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~---~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P- 110 (337)
+.+...+..+...|..+...|++++|+.+|.+++.. .++++...+.++.|+|.++..+|++++|+..+++++.+.+
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 60 GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 456688899999999999999999999999999998 3333335788999999999999999999999999997642
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 111 -DY----PKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 111 -~~----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
.+ ..++..+|.++..+|++++|+.++++++++.
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 22 3456899999999999999999999999874
No 172
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=1.8e-08 Score=83.04 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCHHH
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLK-P-DYPKVKLRAAQCLFHLKKFED 131 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~-P-~~~ka~~r~a~a~~~lg~~~e 131 (337)
...+.+.|.+.+..++. ...+.+|.|.|+.+.+ ++++++..++..++.+ | .+..++|.+|.+++.+|+|++
T Consensus 14 l~~~~~~y~~e~~~~~~----~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 45667788888876665 4588999999999988 7779999999999999 7 678999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 132 CTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 132 A~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
|.++++++|+++|+|..+..++..+.
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999988776654
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.88 E-value=5.5e-08 Score=76.03 Aligned_cols=80 Identities=13% Similarity=0.041 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD---STVIDLR 153 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l 153 (337)
..++++|.+++..|+|.+|+..++++++.+|++. .+++.+|.++..+|++++|+.+|+++++.+|++ ..+...+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3467899999999999999999999999999998 899999999999999999999999999999999 7777777
Q ss_pred HHHHHH
Q psy5660 154 TSCINK 159 (337)
Q Consensus 154 ~~~~~~ 159 (337)
+.+...
T Consensus 83 a~~~~~ 88 (129)
T 2xev_A 83 GLSQYG 88 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777655
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.8e-08 Score=79.16 Aligned_cols=82 Identities=15% Similarity=0.267 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
.+..+.++|.+++..|+|.+|+..++++++++|++ ..+++.+|.++..+|++++|+.+|+++++++|++..+...++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56889999999999999999999999999999998 899999999999999999999999999999999988888887
Q ss_pred HHHHH
Q psy5660 155 SCINK 159 (337)
Q Consensus 155 ~~~~~ 159 (337)
.+...
T Consensus 107 ~~~~~ 111 (148)
T 2dba_A 107 QALEK 111 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77655
No 175
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.85 E-value=2.9e-08 Score=89.20 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=97.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA--DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY- 112 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~--~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~- 112 (337)
.+...+..+...|..++..|++++|+.+|.+++...+. +....+.++.++|.++..+|++++|+..+++++.+.+..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 34567788999999999999999999999999988653 333456699999999999999999999999999987765
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 113 -----PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 113 -----~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
..+++.+|.++..+|++++|+.++++++++.+.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999988653
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.84 E-value=1e-08 Score=79.45 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=76.6
Q ss_pred hHHHhh-ccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHH
Q psy5660 21 LVEGLQ-QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99 (337)
Q Consensus 21 ~lealq-aL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al 99 (337)
.++.++ ++..+| ..+..+...|..++..|+|++|+.+|.+++..+|. ...+|.++|.++..+|++++|+
T Consensus 4 a~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 4 ITERLEAMLAQGT------DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----YSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp HHHHHHHHHTTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCC------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----cHHHHHHHHHHHHHcCCHHHHH
Confidence 344444 566676 44678999999999999999999999999999998 5689999999999999999999
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHh
Q psy5660 100 TDCQIALKLKPD--YPKVKLRAAQCLFH 125 (337)
Q Consensus 100 ~d~~~Al~l~P~--~~ka~~r~a~a~~~ 125 (337)
..+++|++++|. +..+...+...+..
T Consensus 74 ~~~~~al~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 74 QAWESGLAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 999999999884 34444444444433
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.83 E-value=3.6e-08 Score=91.94 Aligned_cols=127 Identities=10% Similarity=-0.022 Sum_probs=110.5
Q ss_pred hHHHhhc-cccCCCCCChHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HH
Q psy5660 21 LVEGLQQ-LKYDPLENTPEELATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YR 96 (337)
Q Consensus 21 ~lealqa-L~~dp~~~~~~e~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~ 96 (337)
+++++.. |..+| +....+..+|..+.+.+ .+++++.++.++++.+|. +..+|++|+.+...+|. +.
T Consensus 93 EL~~~~~~L~~~P------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr----Ny~AW~~R~~vl~~l~~~~~ 162 (331)
T 3dss_A 93 ELGFLESCLRVNP------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER----NFHCWDYRRFVAAQAAVAPA 162 (331)
T ss_dssp HHHHHHHHHHHCT------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHhCC------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCcCHH
Confidence 3444433 44576 67788889999998888 499999999999999999 67999999999999998 69
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHL--------------KKFEDCTHLCDELLKENPTDSTVIDLRTSCI 157 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 157 (337)
+++..+.++|+.+|.|..||..++.++..+ +.++++++++.+++.++|+|..+...+.-+.
T Consensus 163 eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 163 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999888 5699999999999999999999987554443
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.82 E-value=8.6e-09 Score=78.41 Aligned_cols=81 Identities=10% Similarity=-0.017 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD--YPKVK 116 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~--~~ka~ 116 (337)
..+..+...|..+++.|+|++|+.+|+++++.+|++ ..+|.++|.|+..+|++++|+..+++|+++.|. +..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 80 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL 80 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence 456788999999999999999999999999999984 479999999999999999999999999999764 33433
Q ss_pred HHHHHHH
Q psy5660 117 LRAAQCL 123 (337)
Q Consensus 117 ~r~a~a~ 123 (337)
..+...+
T Consensus 81 ~~l~~~l 87 (100)
T 3ma5_A 81 SELQDAK 87 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.82 E-value=6.6e-08 Score=90.71 Aligned_cols=126 Identities=10% Similarity=-0.059 Sum_probs=108.5
Q ss_pred HhhccccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHH
Q psy5660 24 GLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDC 102 (337)
Q Consensus 24 alqaL~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~ 102 (337)
.+-.|.|.| +-...+-.......+.+..++|+..++++|.++|. +..+|++|+.+...+| .+++++..+
T Consensus 43 ~~~~i~y~~------~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~----~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 43 PVVPIMYSE------EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA----HYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp CSSCBCCCH------HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CeeeeeeCH------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445667764 55555555555555566678999999999999999 6799999999999999 599999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 103 QIALKLKPDYPKVKLRAAQCLFHL-K-KFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 103 ~~Al~l~P~~~ka~~r~a~a~~~l-g-~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++|..+|++..+|..++.++..+ + ++++++.++.++++++|.|..+...+..+...
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~ 171 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH 171 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998 8 99999999999999999999998887776654
No 180
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.80 E-value=1.4e-07 Score=83.90 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHH----hCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCC
Q psy5660 41 ATTYKDEGNFNFK----CNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 41 A~~~k~~Gn~~~k----~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+..+...|..+.. .+++++|+.+|+++++.. ...++.++|.++.. .+++.+|+..+++|++.+ +
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~ 109 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y 109 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C
Confidence 4677889999999 999999999999999875 34788899999999 999999999999999874 7
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 113 PKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 113 ~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
..+++.+|.++.. .+++++|+.+|+++++.+ +..+...++.+..
T Consensus 110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 8999999999999 999999999999999875 5556656655543
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.78 E-value=1.1e-07 Score=73.66 Aligned_cols=82 Identities=15% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD-------STVI 150 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~-------~~~~ 150 (337)
.+..+.++|.++...|++.+|+..+.+++.++|.+..+++.+|.++..+|++++|+.++++++.++|.+ ..+.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999998876 6666
Q ss_pred HHHHHHHHH
Q psy5660 151 DLRTSCINK 159 (337)
Q Consensus 151 ~~l~~~~~~ 159 (337)
..++.+...
T Consensus 83 ~~la~~~~~ 91 (131)
T 1elr_A 83 ARIGNSYFK 91 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666544
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=7.2e-08 Score=83.50 Aligned_cols=111 Identities=8% Similarity=-0.009 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhhCCCCHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK----NYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg----~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+..+...|..++..+++++|+.+|++|++.. .+.+++++|.++.. + ++.+|+..+++|+ ++.++.+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a 87 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSG 87 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHH
Confidence 46778889999999999999999999998763 34778888888887 6 8888888888885 4568888
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFH----LKKFEDCTHLCDELLKENPT--DSTVIDLRTSCINK 159 (337)
Q Consensus 116 ~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~~~~~ 159 (337)
++.+|.++.. .+++++|+.+|+++++..|. +..+...++.+...
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 8888888887 78888888888888888763 46677777766544
No 183
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.76 E-value=7e-08 Score=74.23 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD---NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~---~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
+..+.+.|+.+++.|+|..|+..|.+|+...+.+ ......++.++|.|+.++|+++.|+..+++|++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567788999999999999999999998865322 1226677788888888888888888888888888888877766
Q ss_pred HHH
Q psy5660 118 RAA 120 (337)
Q Consensus 118 r~a 120 (337)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 184
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.74 E-value=9.3e-08 Score=92.47 Aligned_cols=114 Identities=5% Similarity=-0.012 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccc-----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCC
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIK-----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----KPD 111 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~-----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~P~ 111 (337)
....+.+...-..|+|++|+..|.++++.. |+.+ ..+..+.|+|.+|..+|+|++|+..+++||.+ .|+
T Consensus 299 ~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 299 RNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 344455555556789999999999999853 3333 37788999999999999999999999999976 455
Q ss_pred CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q psy5660 112 YP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTSC 156 (337)
Q Consensus 112 ~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~ 156 (337)
++ ..+.++|.+|..+|++++|+..|++++++ .|+++....+...+
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 54 77899999999999999999999999987 58888777655443
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.73 E-value=7e-08 Score=83.57 Aligned_cols=112 Identities=6% Similarity=-0.127 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhC----cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCC-
Q psy5660 40 LATTYKDEGNFNFKCN----KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKP- 110 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g----~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P- 110 (337)
.+.++...|..+.. + ++++|+.+|++|++.. .+.+++|+|.++.. .+++.+|+..+++|++.+|
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES 121 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence 35678889999887 6 8999999999997653 45889999999998 8999999999999999998
Q ss_pred -CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 111 -DYPKVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 111 -~~~ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++.+++.+|.++.. .+++++|+.+|++++++ |++..+...++.+...
T Consensus 122 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 122 DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 469999999999999 88999999999999998 6777788888777654
No 186
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.73 E-value=1.1e-07 Score=72.01 Aligned_cols=79 Identities=18% Similarity=0.155 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKN---YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~---~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
++.++..+|.+++..++ ..+|...+++||+++|+++++++.+|..++..|+|++|+..++++++.+|.++....+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~ 84 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE 84 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 56888999999987666 799999999999999999999999999999999999999999999999998544444333
Q ss_pred HH
Q psy5660 155 SC 156 (337)
Q Consensus 155 ~~ 156 (337)
.+
T Consensus 85 ~I 86 (93)
T 3bee_A 85 SI 86 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 187
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.71 E-value=4.9e-07 Score=84.05 Aligned_cols=118 Identities=8% Similarity=-0.030 Sum_probs=98.6
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCc--hHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN--DVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 28 L~~dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+...| ...+...+..+...|..++..|++++|+..|.+++...+... .....++.++|.++...|++++|+..++++
T Consensus 41 l~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 41 LEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444 344556777889999999999999999999999999876432 334567889999999999999999999999
Q ss_pred HhhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 106 LKLK--------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 106 l~l~--------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
+.+. |....++..+|.++...|++++|..++++++.+.+..
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 9875 3345778889999999999999999999999998753
No 188
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.70 E-value=1.9e-07 Score=91.72 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHH-------hCcHH-------HHHHHHHHHHc-cccCCchHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFK-------CNKYR-------NAIINYTEGLK-IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k-------~g~y~-------~Ai~~Y~~ai~-~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~ 103 (337)
..+..+...|..+.+ .|+++ +|+..|.+|++ ..|+ ...+|.++|..+.++|++++|...++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~----~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----NMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 346778888888876 68877 89999999997 7887 56899999999999999999999999
Q ss_pred HHHhhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 104 IALKLKPDYP-KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 104 ~Al~l~P~~~-ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
+|++++|.+. .+|...|.++...|++++|...|+++++..|.+....
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 9999999985 6999999999999999999999999999888765543
No 189
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.69 E-value=4.8e-07 Score=87.39 Aligned_cols=118 Identities=8% Similarity=-0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CC
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL-----KP 110 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l-----~P 110 (337)
.+....+.-..+.++|+|++|+..|.++++..- .+....+..+.|+|.+|..+|+|++|+..++++|.+ .|
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 345555666677889999999999999997631 222347889999999999999999999999999976 45
Q ss_pred CCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q psy5660 111 DYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE-----NPTDSTVIDLRTSCI 157 (337)
Q Consensus 111 ~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l-----~P~~~~~~~~l~~~~ 157 (337)
.++ ..++++|.+|..+|++++|+..|++++++ .|+++.....+..+.
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 554 67899999999999999999999999986 688887776654443
No 190
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=2.7e-07 Score=90.66 Aligned_cols=117 Identities=14% Similarity=-0.001 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
+.+..+...|+.+.+.|++++|...|.++++..|.++ ..+|.+.|.+..+.|++++|+..+++|++..|.+...+..
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~ 395 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHH
Confidence 4577888999999999999999999999999988742 2589999999999999999999999999999988888776
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 119 AAQC-LFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a-~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.|.. +...|++++|...|+++++.+|++..+...+..+..
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 6655 346899999999999999999999888776666543
No 191
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.60 E-value=2.7e-07 Score=83.94 Aligned_cols=146 Identities=8% Similarity=0.006 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY--PKVKLR 118 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~--~ka~~r 118 (337)
.......+..+...|+|++|.+.|...+...|. .. .++++|.++++.|+|.+|+..++.++...+.. ..+++.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~----~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSE----HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH----HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 344556789999999999999999999988876 44 88899999999999999999999887764222 358999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKEN--PT-DSTVIDLRTSCINKHKE---ILRNERKQAQQVKKEEKEKERVLQIIRERK 192 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~~l~~al~~rg 192 (337)
+|.++..+|++++|+.+|++++... |. ...+...++.+.....+ +....++... .... .....+|....
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a----~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT----THPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSCC-HHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc-HHHHHHHhCCC
Confidence 9999999999999999999998654 54 44566666666655222 2222222211 1122 55777777665
Q ss_pred cccc
Q psy5660 193 IKLA 196 (337)
Q Consensus 193 i~~~ 196 (337)
..+.
T Consensus 252 ~~~~ 255 (282)
T 4f3v_A 252 YRLK 255 (282)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5443
No 192
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.59 E-value=2.9e-07 Score=85.64 Aligned_cols=110 Identities=7% Similarity=0.022 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--c--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q psy5660 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--N--DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK 109 (337)
Q Consensus 34 ~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~--~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~ 109 (337)
.+.+...+..+...|..++..|+|.+|+.+|.+++...+.. . .....++.++|.++..+|++++|+..+++++.+.
T Consensus 86 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 86 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34555667778899999999999999999999999976421 1 2366788999999999999999999999999998
Q ss_pred CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 110 PD-----YPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 110 P~-----~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
+. ...++..+|.++...|++++|..++++++.+.
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 75 35688899999999999999999999999874
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.57 E-value=8.1e-07 Score=68.16 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-------PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-------P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
.+.-++.+|..++..|+|..|+..+++|++.. +.....+..+|.|+..+|+++.|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556789999999999999999999999973 34578899999999999999999999999999999998887
Q ss_pred HHHHHHH
Q psy5660 151 DLRTSCI 157 (337)
Q Consensus 151 ~~l~~~~ 157 (337)
..+....
T Consensus 84 ~n~~~~~ 90 (104)
T 2v5f_A 84 GNLKYFE 90 (104)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 6665443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=1.7e-06 Score=69.72 Aligned_cols=95 Identities=6% Similarity=-0.088 Sum_probs=82.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a 122 (337)
.|..+...+.+++|+.+|++|.+.. .+.+++|+|.+|.. .+++.+|+..+++|.+. .++.+++++|.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 8888888888889999999999873 35889999999998 89999999999999887 689999999999
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 123 LFH----LKKFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 123 ~~~----lg~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
+.. .+++++|+.+|+++.+. ++..+..
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~ 133 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRL--GSEDACG 133 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHH
Confidence 999 89999999999999987 4444443
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.44 E-value=3.4e-06 Score=81.88 Aligned_cols=107 Identities=7% Similarity=0.019 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 42 TTYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF----LKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~----lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
..+...|..++..| ++++|+.+|+++++.. .+.++.++|.++.. .+++.+|+..+++|++.+ +..
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~ 400 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSA 400 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHH
Confidence 34555666666544 6677777777777652 34677777777777 677777777777777653 577
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q psy5660 115 VKLRAAQCLFH----LKKFEDCTHLCDELLKENPT---DSTVIDLRTSC 156 (337)
Q Consensus 115 a~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~---~~~~~~~l~~~ 156 (337)
+++++|.++.. .+++++|+.+|+++++.+|+ +..+...++.+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 77777777777 77778888888887777743 55555555444
No 196
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.38 E-value=3.6e-06 Score=66.90 Aligned_cols=101 Identities=10% Similarity=0.022 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHhcCCH
Q psy5660 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS---CLTDCQIALKLK-P-DYPKVKLRAAQCLFHLKKF 129 (337)
Q Consensus 55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~---Al~d~~~Al~l~-P-~~~ka~~r~a~a~~~lg~~ 129 (337)
.....+...|.+.+..++. .....+|.|.|+.+-++-.. +|..+...++-+ | ..-.++|.+|.+++++|+|
T Consensus 15 ~~l~~~~~~y~~e~~~~~~----s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 3455667778887775553 55888999999988776555 999999988877 5 5678999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 130 EDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
..|.++++.+|+++|+|..+..+...+..+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~ 120 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLIDKA 120 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988877654
No 197
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.36 E-value=5.3e-06 Score=78.00 Aligned_cols=115 Identities=8% Similarity=-0.106 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCH-------HHHHHHHH---HHH
Q psy5660 40 LATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY-------RSCLTDCQ---IAL 106 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~-------~~Al~d~~---~Al 106 (337)
.|-.+.-+|..++..+. +.+|+.+|++|++++|+ .+.+|..++.||..+..+ ..++.... .++
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~----~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE----FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 35566677888776654 68999999999999998 556666666655422111 01111111 122
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 107 KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 107 ~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++|..+.++..+|.++...|++++|+..+++++.++|+ .....+++.+...
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 345555555555555555556666666666666666543 3333444444433
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.35 E-value=1.7e-06 Score=84.94 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----- 108 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----- 108 (337)
...+..+.+.|..|..+|+|++|+.+|.++++.. +.+-...+..++|+|.+|..+|+|++|+..+++|+.+
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3688899999999999999999999999999862 2223347899999999999999999999999999985
Q ss_pred CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 KPDYP---KVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 ~P~~~---ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.|+++ +..-.++.++..+++|++|...|+++.+-
T Consensus 428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57765 55567899999999999999999888653
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.28 E-value=5.1e-05 Score=73.51 Aligned_cols=107 Identities=13% Similarity=-0.025 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHh-----CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCH
Q psy5660 42 TTYKDEGNFNFKC-----NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 42 ~~~k~~Gn~~~k~-----g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~~~ 113 (337)
..+...|..+... +++++|+..|.++++..+ ..++.++|.++...| ++++|+..+++|++. .++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~ 363 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD------ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK 363 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH
Confidence 4556677777776 788888888888877643 367888888888765 788899999998877 578
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 114 ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.+++.+|.++.. .+++++|+.+|+++++. ++..+...++.+..
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYY 410 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 899999999988 88999999999998875 45667666666654
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.24 E-value=9.1e-06 Score=78.56 Aligned_cols=107 Identities=14% Similarity=0.027 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 43 TYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL----KNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 43 ~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l----g~~~~Al~d~~~Al~l~P~~~ka 115 (337)
.+...|..+.+.| ++++|+..|+++++..+. .+..++|+|.++... +++.+|+..+++|. |.++.+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~----~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV----TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 6678888888888 889999999999988877 456667888888665 68888888888887 788888
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 116 KLRAAQC-L--FHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 116 ~~r~a~a-~--~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++++|.+ + ...+++++|+.+|+++.+. ++..+...++.+..
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 8888887 4 4678888888888888754 46777777766654
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=7.9e-06 Score=77.12 Aligned_cols=105 Identities=13% Similarity=0.074 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC------------------------------------------ch
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------------------------------------------ND 76 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~------------------------------------------~~ 76 (337)
....++.+.|+.+++.|+|++|+.+|.+++...+.. ..
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 455678899999999999999999999888753321 11
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
..+.++.++|.++..+|+|.+|+..+++++.. .+....++...|.++..+|++.+|...+++++.+.
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 23556677777777777777777777777665 22335677777777777777777777777777663
No 202
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=1.3e-05 Score=65.94 Aligned_cols=79 Identities=18% Similarity=0.097 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHccc-cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q psy5660 39 ELATTYKDEGNFNFKCN---KYRNAIINYTEGLKIK-CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~-p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~k 114 (337)
...+..++.|..+.+.+ +.++|+..++..++.+ |. .+..+++|+|.+++++|+|.+|+..|+++|+++|+|..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 35678889999999988 7889999999999987 52 26789999999999999999999999999999999998
Q ss_pred HHHHHH
Q psy5660 115 VKLRAA 120 (337)
Q Consensus 115 a~~r~a 120 (337)
|..-.-
T Consensus 107 A~~Lk~ 112 (152)
T 1pc2_A 107 AKELER 112 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 203
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.11 E-value=2.2e-05 Score=72.21 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhC--cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh---------
Q psy5660 40 LATTYKDEGNFNFKCN--KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--------- 108 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g--~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--------- 108 (337)
........|.+.+..| ++.+|...|+++.+..|+.. ...++.| |++++|+|++|..+++.++++
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~ 249 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKEN 249 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 3344444565566666 99999999999888776411 2345555 899999999999999988887
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 109 -KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 109 -~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
+|+++.++.+++.+...+|+ +|.+++.++.+.+|+++-+.....
T Consensus 250 ~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 250 AVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 59999999999999999998 999999999999999998877543
No 204
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.09 E-value=7.4e-06 Score=78.92 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH----
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLR---- 118 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r---- 118 (337)
++...|+.++..|+|++|+.+|+++ ..|.++|.|+.++|+|++|++.+++| .++++|..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~a 186 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFA 186 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHH
Confidence 8899999999999999999999976 34888999999999999999999999 24433333
Q ss_pred --------------------------HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 119 --------------------------AAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 119 --------------------------~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
+..+|...|++++|+..++.++.+++.+..+...++.+..
T Consensus 187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3356777788888888888888888888777776655543
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.08 E-value=1.9e-05 Score=76.35 Aligned_cols=105 Identities=3% Similarity=-0.119 Sum_probs=60.2
Q ss_pred HHHHHHHHHH---HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhhCCCCH
Q psy5660 42 TTYKDEGNFN---FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-----NYRSCLTDCQIALKLKPDYP 113 (337)
Q Consensus 42 ~~~k~~Gn~~---~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-----~~~~Al~d~~~Al~l~P~~~ 113 (337)
..+.+.|..+ ...+++++|+.+|++|++.. .+.+++|+|.++. .| ++.+|+..+++|. |.++
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~ 318 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV 318 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH
Confidence 3444555552 24456666666666665433 2355666666665 33 6666666666666 6666
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 114 KVKLRAAQCLFH----LKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 114 ka~~r~a~a~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
.+++++|.+|.. ..++++|+.+|+++.+ +++..+...++.+..
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 666666666655 2366666666666664 344555555555544
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.07 E-value=2.5e-05 Score=84.16 Aligned_cols=106 Identities=11% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----------
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP----------- 110 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P----------- 110 (337)
..+...|+.++..|+|++|+.+|++| ..|..+|.|+.++|+|++|++.+++|...++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh
Confidence 35667999999999999999999985 4688999999999999999999999954433
Q ss_pred --------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 111 --------------DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 111 --------------~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.++..+..++..|...|.|++|+..|+.+|.+++.+..+...+..+..+
T Consensus 1264 ~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred hHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 1334455777788899999999999999999999988777766666544
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.06 E-value=3.7e-05 Score=61.73 Aligned_cols=93 Identities=9% Similarity=-0.085 Sum_probs=81.4
Q ss_pred CcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHH
Q psy5660 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH----LKKFE 130 (337)
Q Consensus 55 g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~----lg~~~ 130 (337)
+++++|+.+|+++.+.... .+. +|.++...+.+.+|+..+++|.+. .++.+++++|.++.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCCCH------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHH
Confidence 5789999999999998754 222 999999999999999999999987 689999999999999 89999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 131 DCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 131 eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
+|+.+|+++.+. ++..+...++.+...
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999999999987 678888888877654
No 208
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.05 E-value=2.8e-05 Score=64.52 Aligned_cols=119 Identities=20% Similarity=0.168 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-- 109 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-- 109 (337)
|...-.++.++...++..|.|+.|+-.+..++.+..++ +.....++...|.+++..|+|++|...|++||++.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34455678899999999999999999999988775332 34577889999999999999999999999998752
Q ss_pred -CCC----------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy5660 110 -PDY----------------------PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156 (337)
Q Consensus 110 -P~~----------------------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 156 (337)
+++ ....|+.|.|+.+++++++|+..++..-. --..+.+.-.++++
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 111 25779999999999999999998663211 11334454444443
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.03 E-value=1.7e-05 Score=72.00 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHh-cCCH
Q psy5660 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL-----KNYRSCLTDCQIALKLKPDY-PKVKLRAAQCLFH-LKKF 129 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~l-----g~~~~Al~d~~~Al~l~P~~-~ka~~r~a~a~~~-lg~~ 129 (337)
...|.....+||+++|+.. ...+|.-+|..|.++ |+.++|...+++||+++|+. ..+++..|..+.. .|++
T Consensus 179 l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 6889999999999999732 567999999999996 99999999999999999975 9999999999988 5999
Q ss_pred HHHHHHHHHHHhhCCCC
Q psy5660 130 EDCTHLCDELLKENPTD 146 (337)
Q Consensus 130 ~eA~~~~~~al~l~P~~ 146 (337)
++|.+.+++++..+|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999999999987763
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.97 E-value=2.1e-05 Score=59.22 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q psy5660 39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~ 112 (337)
+.+..+...|..++-.++ ..+|...+.+|++.+|+ +..++..+|..+++.|+|++|+..++++++.+|..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~----~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY----NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456778889999976655 79999999999999999 56888999999999999999999999999999984
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.97 E-value=4.2e-05 Score=82.45 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccC------------------CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCA------------------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~------------------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
+-|..+...|.|++|...|.++-...-. ..-....+|+++|.++...|++.+|+..|.+|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 3488888889999998888886422100 00014688999999999999999999999887
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 108 LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 108 l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
++..+|++.|.++..+|+|++|+++|..+.+.+++
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999999999987754
No 212
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.95 E-value=0.0001 Score=58.85 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLK---NYRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg---~~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
....-+|.|.|..+-. +..++|..+...++.+|. .-.++|.+|.+++++|+|.+|.++++.+|+++|+|..+..+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4577788888888765 456799999999998884 468999999999999999999999999999999999999998
Q ss_pred HHHHHHH
Q psy5660 154 TSCINKH 160 (337)
Q Consensus 154 ~~~~~~~ 160 (337)
..+..+.
T Consensus 119 ~~Ie~ki 125 (134)
T 3o48_A 119 SMVEDKI 125 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 213
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.90 E-value=0.0006 Score=62.65 Aligned_cols=109 Identities=14% Similarity=0.017 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPD----YPKVKLRA 119 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~----~~ka~~r~ 119 (337)
+.-.|..+...|++++|++.+.++|..+|.. ....++.-++.+++++|+.+.|...+++..+.+|+ +-.....+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~--~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE--GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 4589999999999999999999999988721 16788888999999999999999999999999993 23334444
Q ss_pred --HHHHHhcC--CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 120 --AQCLFHLK--KFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 120 --a~a~~~lg--~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
|.+.+..| ++.+|...|+++....|+......++.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln 219 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN 219 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 54466667 999999999999888776333333333
No 214
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.87 E-value=0.00023 Score=57.46 Aligned_cols=81 Identities=12% Similarity=0.016 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKN---YRSCLTDCQIALKLKPD-YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~---~~~Al~d~~~Al~l~P~-~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l 153 (337)
.....+|.|.|..+-.+ .+++|..++..++-.|. .-.++|.+|.+++++|+|.+|.++++.+|+++|+|.++..+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45778888888887654 56799999999998884 568999999999999999999999999999999999998877
Q ss_pred HHHHH
Q psy5660 154 TSCIN 158 (337)
Q Consensus 154 ~~~~~ 158 (337)
..+..
T Consensus 118 ~~Ie~ 122 (144)
T 1y8m_A 118 SMVED 122 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.4e-05 Score=69.61 Aligned_cols=104 Identities=9% Similarity=0.008 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CC-
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP---DY- 112 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---~~- 112 (337)
..+..+...|+.++..|+|.+|+..+.+++.... .+......++.+.+.++..+|+|.+|...+++|+.+.+ ..
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 3577788999999999999999999999987633 34455788999999999999999999999999998743 22
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 113 ---PKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 113 ---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
...+..+|..+...|+|.+|..+|..+++.
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 245667789999999999999999999875
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.0004 Score=66.84 Aligned_cols=90 Identities=7% Similarity=0.026 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL---- 108 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l---- 108 (337)
-...+..+.+.|..|..+|+|++|+.+|.+++... +.+-...+..++|+|.+|..+|+|++|+..+++|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999999762 3333448899999999999999999999999999985
Q ss_pred -CCCCH---HHHHHHHHHHHhc
Q psy5660 109 -KPDYP---KVKLRAAQCLFHL 126 (337)
Q Consensus 109 -~P~~~---ka~~r~a~a~~~l 126 (337)
.|+++ .++..++.|...+
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHH
Confidence 57765 3444556655443
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.57 E-value=0.00021 Score=68.95 Aligned_cols=77 Identities=10% Similarity=-0.043 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----- 108 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----- 108 (337)
...+..+.+.|..|..+|+|++|+.+|.++++.. +.+-...+..++|+|.+|..+|+|++|+..+++|+++
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 3688999999999999999999999999999762 2223347899999999999999999999999999985
Q ss_pred CCCCHH
Q psy5660 109 KPDYPK 114 (337)
Q Consensus 109 ~P~~~k 114 (337)
.|+++.
T Consensus 417 G~~Hp~ 422 (433)
T 3qww_A 417 GKDHPY 422 (433)
T ss_dssp CTTCHH
T ss_pred CCCChH
Confidence 577654
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.54 E-value=6.6e-05 Score=72.31 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC-----------------------chHHHHHHHHHHHHHHHccCHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------------------NDVNAQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~-----------------------~~~~~~~~~nra~~~~~lg~~~ 96 (337)
....+.+.|+.+...|+|++|+.++..+++..++. ..-+...|.++|.++...|+|+
T Consensus 60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 60 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp -------------------------------------------------CHHHHTTTTTCC----------------CTT
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHH
Confidence 34467777778888888888888888877542110 0013357888899999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 97 ~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
+|+..+.++ ..|.++|.|+..+|+|++|+++++++
T Consensus 140 eA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 140 AAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp THHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence 999999877 47889999999999999999999999
No 219
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.45 E-value=0.00067 Score=56.22 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=69.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccC---Cc------------------hHHHHHHHHHHHHH
Q psy5660 31 DPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCA---DN------------------DVNAQLYNNRAASN 89 (337)
Q Consensus 31 dp~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~---~~------------------~~~~~~~~nra~~~ 89 (337)
+|+-.+|...++.+...|+.+|.+|+|..|...|++||...-. .+ .-...+.+..|.|+
T Consensus 53 ~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~ 132 (167)
T 3ffl_A 53 NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECY 132 (167)
T ss_dssp STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHH
Confidence 4444589999999999999999999999999999999876321 10 01226788899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
.++|++++|+...+.. -..-..++....+|+.|
T Consensus 133 ~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 133 TVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 9999999999986542 22334667777777654
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.31 E-value=0.0017 Score=51.45 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhCcHHH---HHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRN---AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~---Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~ 116 (337)
....-.+.|..+.+.++-.+ +|..++..+... .+...-.+.+.+|.+++++|+|..|+..|+..|+.+|.|..|.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 34566778888888776555 999999988865 1223667888899999999999999999999999999998876
Q ss_pred HHH
Q psy5660 117 LRA 119 (337)
Q Consensus 117 ~r~ 119 (337)
--.
T Consensus 112 ~Lk 114 (126)
T 1nzn_A 112 ELE 114 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.18 E-value=0.0044 Score=49.34 Aligned_cols=79 Identities=9% Similarity=-0.054 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
-.+..-.+.+..+.+.++ ...+|..++..+...|.. .-.+++.+|.+|+++|+|..|...|+..|+.+|.|..|
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 355777788888888765 467999999988876632 55778889999999999999999999999999999887
Q ss_pred HHHHH
Q psy5660 116 KLRAA 120 (337)
Q Consensus 116 ~~r~a 120 (337)
.--..
T Consensus 115 ~~Lk~ 119 (134)
T 3o48_A 115 GALKS 119 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.18 E-value=0.0013 Score=61.63 Aligned_cols=77 Identities=9% Similarity=-0.022 Sum_probs=67.5
Q ss_pred HHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 67 GLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 67 ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
++...|. .+.+|.-+|.+++..|++++|+..+++|+.++|+ .-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus 269 a~~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4455666 5577887888888889999999999999999974 7788999999999999999999999999999987
Q ss_pred HH
Q psy5660 147 ST 148 (337)
Q Consensus 147 ~~ 148 (337)
+.
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 64
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.11 E-value=0.0076 Score=54.60 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q psy5660 94 NYRSCLTDCQIALKLKPD--YPKVKLRAAQCLFHL-----KKFEDCTHLCDELLKENPTD-STVIDLRTSC 156 (337)
Q Consensus 94 ~~~~Al~d~~~Al~l~P~--~~ka~~r~a~a~~~l-----g~~~eA~~~~~~al~l~P~~-~~~~~~l~~~ 156 (337)
....|....++|+++||+ +..+|..+|..|..+ |+.+.|.++|+++|+++|+. .......++.
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 478899999999999999 566999999999996 99999999999999999975 7666666654
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.07 E-value=0.0077 Score=48.53 Aligned_cols=78 Identities=9% Similarity=-0.059 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 39 ELATTYKDEGNFNFKCNK---YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~---y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
-..+.-++.+..+.+..+ -+.+|..++..+...|.. .-.+.+.+|.+++++|+|..|...|+..|+.+|.|..|
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 456777888888888875 467999999999877743 45677779999999999999999999999999999877
Q ss_pred HHHH
Q psy5660 116 KLRA 119 (337)
Q Consensus 116 ~~r~ 119 (337)
.-..
T Consensus 114 ~~Lk 117 (144)
T 1y8m_A 114 GALK 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 225
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.04 E-value=0.016 Score=54.77 Aligned_cols=118 Identities=8% Similarity=0.064 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--------c----------hHHHHHHHHHHHHHHHccCHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--------N----------DVNAQLYNNRAASNFFLKNYRSCLT 100 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--------~----------~~~~~~~~nra~~~~~lg~~~~Al~ 100 (337)
...+.+...|......|+...|+..+.+|+.+-..+ . +....+...++.+++.+|++.+|+.
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~ 192 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 192 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344566677777788899999999999999873211 0 1233444557788889999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHH
Q psy5660 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE-------NPTDSTVIDLRTSCI 157 (337)
Q Consensus 101 d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l-------~P~~~~~~~~l~~~~ 157 (337)
.+.+++..+|-+-.++..+-.++...|+..+|++.|+++-+. +| .+++..+...+.
T Consensus 193 ~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il 255 (388)
T 2ff4_A 193 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653 44 355555555544
No 226
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.42 E-value=0.02 Score=58.17 Aligned_cols=98 Identities=9% Similarity=-0.002 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHH-HHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----------
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAI-INYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL----------- 108 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai-~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l----------- 108 (337)
+..+...+..+...|+...|+ ..|.+|+...|. ...+|...|....+.|++++|...+++++..
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~----s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN----SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 455667777777788888887 999999998887 4577888888888899999999999988875
Q ss_pred CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 109 KPD-----------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 109 ~P~-----------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.|. ...+|...+......|..+.|...+.+|++.
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 253 3457788888888888899999999999876
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.38 E-value=0.045 Score=55.58 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN-YRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~-~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
.+..+...++...+.|..+.|...|.+|++..|.. ...+|...|..-.+.++ ++.|...++++++..|++...+..
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~ 509 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 44556677777777889999999999999873321 23566666666666654 999999999999999999998888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDELLKENPT---DSTVIDLRTSCIN 158 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~al~l~P~---~~~~~~~l~~~~~ 158 (337)
.+......|+.+.|..+|++++...|+ ...+.......+.
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 899888999999999999999999884 3334444444333
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.16 E-value=0.1 Score=42.39 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHccccCCc----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660 58 RNAIINYTEGLKIKCADN----DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 58 ~~Ai~~Y~~ai~~~p~~~----~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~ 133 (337)
+.-++.|++|+..-|... .....+|.+-|. +..+++.++|.+.|+.|+.+..+..+.|...|+--...|+...|.
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 778899999999876532 235666776664 467899999999999999998888899999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHH
Q psy5660 134 HLCDELLKENPTDSTVI 150 (337)
Q Consensus 134 ~~~~~al~l~P~~~~~~ 150 (337)
+.+.+++.+.|...++.
T Consensus 115 kILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 115 QLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHTTCBCHHHH
T ss_pred HHHHHHhccCCCcHHHH
Confidence 99999999998876553
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.077 Score=54.32 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
++.--|.-++..|+|+-|+..+++|+.+-|....+|+++|.||..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444555667899999999999999999999999999999999999999999776655
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.48 E-value=0.42 Score=45.10 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=78.1
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHcccc--CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC---CCC--HHHHH-
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKC--ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK---PDY--PKVKL- 117 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p--~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~---P~~--~ka~~- 117 (337)
..|..++..|+|.+|+..+++...... ++....-.+|......|..+||+.++...+.+|.... +.+ ..+.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 689999999999999999999887533 3455677888889999999999999999998887653 122 33444
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHhh
Q psy5660 118 -RAAQCLF-HLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 118 -r~a~a~~-~lg~~~eA~~~~~~al~l 142 (337)
-.|..++ ..++|..|...|-.+++-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 4588888 899999999999888743
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.10 E-value=1.5 Score=42.30 Aligned_cols=109 Identities=9% Similarity=-0.034 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHH------------------------------------HHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN------------------------------------AQLYNN 84 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~------------------------------------~~~~~n 84 (337)
+..+...+..+...|+.+.|...|.+|+.. |.+..+. ..+|.+
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 566778888888999999999999999999 8754211 122333
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK-KFEDCTHLCDELLKENPTDSTVID 151 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg-~~~eA~~~~~~al~l~P~~~~~~~ 151 (337)
.+....+.++.+.|...+.+| +..+.....|...|..-..++ +.+.|...|+.+++..|+++....
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 333344577889999999999 444445566766676666666 699999999999999998876533
No 232
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.02 E-value=0.68 Score=38.48 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=72.5
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--h---------------
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK--L--------------- 108 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~--l--------------- 108 (337)
-.|-.++-.|.|..|+-... .++ .++..+--+.|+.++++|..|+...+..|. .
T Consensus 38 L~~I~LyyngEY~R~Lf~L~---~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLH---KLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHH---TCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred hhhhhhhhcchHhHHHHHHH---hcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 45666777788877775543 222 234444489999999999999999999982 2
Q ss_pred CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 109 KPDYPKVKL-RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152 (337)
Q Consensus 109 ~P~~~ka~~-r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 152 (337)
||.+-.-++ .+|..+..+|.-+||+.++.....++|-...+.++
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 344444444 45999999999999999999999998876665544
No 233
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.97 E-value=0.42 Score=42.57 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=40.5
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy5660 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150 (337)
Q Consensus 89 ~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~ 150 (337)
.++-|+.+.|+..+...++-+|.|.+....+.+.++-.|+++.|.+.++.+.+++|......
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 34556666666666666666666666666666666666666666666666666666654443
No 234
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.84 E-value=0.58 Score=41.65 Aligned_cols=63 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q psy5660 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115 (337)
Q Consensus 49 n~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka 115 (337)
+.+++.|+.++|+......|+.+|.|. .+...+-..+.-.|+|++|...++.+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 467889999999999999999999965 444444555556799999999999999999987654
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.31 Score=46.45 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--CCCH---
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK--PDYP--- 113 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~--P~~~--- 113 (337)
+.+..+...|..+++.|++..|+++|.++......... ...++.+...+++..++|..+...+.+|..+- ..++
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 45567789999999999999999999998876554433 55677778888889999999999999987652 1222
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy5660 114 -KVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143 (337)
Q Consensus 114 -ka~~r~a~a~~~lg~~~eA~~~~~~al~l~ 143 (337)
+.....|..++..++|.+|...|-.++.-.
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 333455777888999999999998887653
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.18 Score=51.57 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
+.-+..++..+..+|+|+.|+.+-.+|+...|. .-..|..+|.||..+|+|+.|+-..+-+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs----eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALD----SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS----CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch----hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 446778899999999999999999999999999 5699999999999999999998665543
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=92.92 E-value=0.81 Score=44.52 Aligned_cols=78 Identities=5% Similarity=-0.138 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy5660 81 LYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158 (337)
Q Consensus 81 ~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 158 (337)
++.++|........+..|...|.+|+.++|++..+|..+|.+....|+.-+|+-+|-+++......+.+...+..+-.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 444556666666778999999999999999999999999999999999999999999999876666666655555443
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.17 E-value=6.5 Score=37.80 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK-NYRSCLTDCQIALKLKPDYPKVKLR 118 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg-~~~~Al~d~~~Al~l~P~~~ka~~r 118 (337)
....+...++...+.+..+.|...|.+| . .|.. ...+|...|..-..++ +.+.|...++.+++.-|+.+..+..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~---~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV---GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC---CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC---ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3456677777777788899999999999 3 3331 3456766777777677 5999999999999999998887777
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~~a 139 (337)
.+.....+|+.+.|...|+++
T Consensus 360 yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 788888899999999999998
No 239
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.70 E-value=3.3 Score=40.08 Aligned_cols=97 Identities=5% Similarity=-0.106 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP-DYPKVKLRAAQ 121 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P-~~~ka~~r~a~ 121 (337)
.|-..-+.+.+.|++++|...+.+..+.... + +...|+.+=.++.+.|+.++|...++...+..- -+...|..+-.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-P--RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3444556667778888888887776654321 1 234555566666777888888877777665431 25566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhh
Q psy5660 122 CLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~l 142 (337)
++...|+.++|.+.+++..+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHh
Confidence 778888888888887776653
No 240
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=90.59 E-value=1.1 Score=43.55 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..+...|...--...+..|..+|.+|+.+.|+ ....|+.+|......|+.-.|+-.|.+++.....+..|.-++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~----~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS----NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCC----CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 35567888888888899999999999999999 66899999999999999999999999999988778888888777
Q ss_pred HHHh
Q psy5660 122 CLFH 125 (337)
Q Consensus 122 a~~~ 125 (337)
.+..
T Consensus 229 ~f~~ 232 (497)
T 1ya0_A 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.87 E-value=7.3 Score=37.03 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc--cCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh---hCCCC
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK---LKPDY 112 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~--p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~---l~P~~ 112 (337)
.+.|.-....+..++..|+|.+|.........-. ..+......++.--...++..++|.+|...++++.. -.+.+
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 3577778889999999999999999998865432 123334566777788889999999999999998742 23333
Q ss_pred --HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 113 --PK--VKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 113 --~k--a~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+ .+.-.|..+...++|.+|..+|..++..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 23 3345688889999999999999999864
No 242
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.73 E-value=9 Score=36.94 Aligned_cols=99 Identities=7% Similarity=0.004 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q psy5660 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK-PDYPKVKLRAAQCLFHLKKFEDCTH 134 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~-P~~~ka~~r~a~a~~~lg~~~eA~~ 134 (337)
..+.|.+.|.+....... + +...|+.+-.++.+.|++++|+..+++..+.. ..+...|-.+-.++...|+.++|.+
T Consensus 85 ~l~~A~~lf~~M~~~G~~-P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVV-P--NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHTTCC-C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 468899999887765322 1 35678888889999999999999999887753 2367888889999999999999999
Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHH
Q psy5660 135 LCDELLKE--NPTDSTVIDLRTSCI 157 (337)
Q Consensus 135 ~~~~al~l--~P~~~~~~~~l~~~~ 157 (337)
.++...+. .|+......++.-+.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99998865 466555555544443
No 243
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.62 E-value=6.4 Score=32.60 Aligned_cols=81 Identities=9% Similarity=-0.092 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQ 121 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~ 121 (337)
..++..|..+..+|+++-|..+|.++=... .+...|.-.|+-+.-....+.|...+- +.....
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------------~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~ 97 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSFD------------KLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLL 97 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------------HHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCHH------------HHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHH
Confidence 357777777777777777777777644321 123333344554443333333332221 223345
Q ss_pred HHHhcCCHHHHHHHHHHH
Q psy5660 122 CLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~a 139 (337)
+++.+|++++|++.+.+.
T Consensus 98 ~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 98 NTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHC
Confidence 677888888888877544
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.98 E-value=3.7 Score=41.20 Aligned_cols=82 Identities=10% Similarity=-0.050 Sum_probs=54.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH--------hhCCCCHHHHHH
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL--------KLKPDYPKVKLR 118 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al--------~l~P~~~ka~~r 118 (337)
+-..+...|+++.|.+.... + + ....|.++|...++.|+++.|...|.++= .....+.+.+..
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~---~--~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTD---E--S----AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTT---C--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred heehhhhcCCHHHHHHHHHh---h--C----cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHH
Confidence 34456677888888877532 1 1 23788888888888888888888887751 122445555566
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q psy5660 119 AAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 119 ~a~a~~~lg~~~eA~~~~~ 137 (337)
+|......|++..|...|.
T Consensus 729 ~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 729 LAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHH
Confidence 6666666666666665543
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.27 E-value=2.6 Score=45.22 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHcccc-CC------------------chHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLKIKC-AD------------------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-~~------------------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~A 105 (337)
.-+|..++..|++++|..+|.+|-..-. .+ ....+.+|......+.+.|.++.++..++.|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5689999999999999999998843210 00 0113456777777888899999999999999
Q ss_pred HhhCCCCH---H--HHHHHHHHHHhcCCHHHHHHHHH
Q psy5660 106 LKLKPDYP---K--VKLRAAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 106 l~l~P~~~---k--a~~r~a~a~~~lg~~~eA~~~~~ 137 (337)
|+..+... + -|.+.-++++.+|+|++|...+-
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99765432 2 46788899999999999987764
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.12 E-value=4 Score=38.01 Aligned_cols=61 Identities=7% Similarity=0.052 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
......+..+...|++.+|+.....++..+|- ...+|..+-.++...|+..+|+..|+++.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~----~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY----REPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456777788999999999999999999998 45788888899999999999999887754
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=83.83 E-value=7.2 Score=39.02 Aligned_cols=47 Identities=2% Similarity=-0.168 Sum_probs=36.1
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 88 ~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
..+.+|+++.|.+.++ ..++...|-.+|..+...++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788888887653 3356788888888888888888888888875
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.00 E-value=2.9 Score=34.71 Aligned_cols=45 Identities=9% Similarity=-0.042 Sum_probs=29.6
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy5660 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139 (337)
Q Consensus 90 ~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~a 139 (337)
+.+||++.|...++.. ++...|-++|.+.+..|+++-|..+|+++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4567777776666543 45566667777777777777777776655
No 249
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.99 E-value=6 Score=28.39 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=9.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q psy5660 124 FHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~ 141 (337)
-..|+|++|+.+|..|++
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345566666555555553
No 250
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.66 E-value=1.9 Score=31.01 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
.+.|..+..+|...=+.|+|.+|+.+|.+||+.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 366778888888888889999999999888874
No 251
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=81.45 E-value=6.5 Score=28.12 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=10.3
Q ss_pred HhcCCHHHHHHHHHHHHh
Q psy5660 124 FHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~ 141 (337)
-..|+|++|+.+|..+++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 355666666666665554
No 252
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=81.39 E-value=7.3 Score=35.44 Aligned_cols=104 Identities=21% Similarity=0.121 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCchHHHHH-------HHHHHHHHHHccCHHHHHHHHHHHHh-----
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADNDVNAQL-------YNNRAASNFFLKNYRSCLTDCQIALK----- 107 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~~~~~~-------~~nra~~~~~lg~~~~Al~d~~~Al~----- 107 (337)
....|-.++..|++.+|+..|+..|..-| ++.+....+ .--.-...+.+.+-.-.-++-.+.++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 45589999999999999999999998654 222211122 11111111122110000012233333
Q ss_pred ----hCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Q psy5660 108 ----LKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147 (337)
Q Consensus 108 ----l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~ 147 (337)
+.|.+.- ++...-...++.++|.-|....++.|++.|..+
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 3444332 333334556889999999999999999998633
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=80.62 E-value=2.5 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|...=+.|+|.+|+.+|.+||+.
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56777777888888888888888888887764
No 254
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=78.21 E-value=11 Score=34.10 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHcccc----CCch-------HHHHHHHHHHHHHHHc--cCHH-HHHHHHHHHHh-
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKC----ADND-------VNAQLYNNRAASNFFL--KNYR-SCLTDCQIALK- 107 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p----~~~~-------~~~~~~~nra~~~~~l--g~~~-~Al~d~~~Al~- 107 (337)
.-...|-.++..|++.+|+..++..|..-| ++.+ +...+.--.-...+.+ +... ...++-.+.++
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 355789999999999999999999998765 2211 1111111111112222 1110 00123344444
Q ss_pred --------hCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy5660 108 --------LKPDYPK-VKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145 (337)
Q Consensus 108 --------l~P~~~k-a~~r~a~a~~~lg~~~eA~~~~~~al~l~P~ 145 (337)
+.|.+.- ++...-...++.++|.-|....++.|++.|.
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3454443 3333344568899999999999999999876
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.03 E-value=6.3 Score=31.92 Aligned_cols=82 Identities=12% Similarity=-0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy5660 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119 (337)
Q Consensus 40 ~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~ 119 (337)
-+..+...+-. ...++.+.|.+.|+.+++.... .+-+|...|.--.+.|+...|.....+|+.+.|.... .+..
T Consensus 60 YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~ 133 (161)
T 4h7y_A 60 FARIQVRFAEL-KAIQEPDDARDYFQMARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEI 133 (161)
T ss_dssp HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHH
T ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHH
Confidence 34444444432 4447889999999999997222 4788888888888999999999999999999997543 3444
Q ss_pred HHHHHhcC
Q psy5660 120 AQCLFHLK 127 (337)
Q Consensus 120 a~a~~~lg 127 (337)
|..-+..|
T Consensus 134 a~~nl~~~ 141 (161)
T 4h7y_A 134 ALRNLNLQ 141 (161)
T ss_dssp HHHHHHTT
T ss_pred HHHhhhcC
Confidence 44444443
No 256
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=76.76 E-value=6 Score=28.97 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEG 67 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~a 67 (337)
.|...|..+--++..+.+.|+|++||++..+|
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 44555555555566666666666666555543
No 257
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=76.68 E-value=4.3 Score=29.34 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
...|..+..+|-..=+.|+|++|+.+|.+||+.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777778888888888888888888888764
No 258
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.20 E-value=22 Score=25.85 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
-.+.|..+..+|...=+.|+|++|+.+|..||+.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467888888999999999999999999998875
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.20 E-value=47 Score=32.21 Aligned_cols=68 Identities=9% Similarity=-0.065 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHcccc-CCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKC-ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP 110 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p-~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P 110 (337)
.+.-.=..|...+.|.+|..+.+++.-... ......+..++-.|.++.-.++|.+|..++..|+..-|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 333333444444445555544444432211 01111234444444444445555555444444444433
No 260
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=73.93 E-value=37 Score=28.16 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHc--cc--cC----------CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy5660 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLK--IK--CA----------DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIAL 106 (337)
Q Consensus 41 A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~--~~--p~----------~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al 106 (337)
+.+..-..-.+.+.++|+.|+.+.+..|. .+ |+ |+....-.++-+|...-+.|+-++||..+.+..
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 34445566778889999999999999993 22 21 223355677778999999999999999998877
Q ss_pred hhCC
Q psy5660 107 KLKP 110 (337)
Q Consensus 107 ~l~P 110 (337)
...|
T Consensus 142 ~~~~ 145 (242)
T 3kae_A 142 GKSF 145 (242)
T ss_dssp HHCC
T ss_pred CCcc
Confidence 6543
No 261
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=73.82 E-value=5.1 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.069 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
-.+.|..+..+|...=..|+|++|+.+|..|++.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777888888888888999999888888774
No 262
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.71 E-value=5.7 Score=27.83 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND 76 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~ 76 (337)
.-...|..+..+|+++.|+.++.+||...|+-.+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3457899999999999999999999999887443
No 263
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.48 E-value=7.3 Score=37.90 Aligned_cols=73 Identities=10% Similarity=-0.025 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKP--DY---PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 74 ~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P--~~---~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
|....+.+++-+=..|+..+.|++|.....++.--.. .| ...+|..|+++...++|.+|.+++..|++..|.+
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3344677777778889999999999999999852221 11 4566778999999999999999999999987765
No 264
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=72.05 E-value=5.3 Score=30.71 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHc
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLK 69 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~ 69 (337)
.+.|..+..+|...=..|+|.+|+.+|..|++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35566666666666666777777777766555
No 265
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=71.39 E-value=32 Score=36.54 Aligned_cols=94 Identities=7% Similarity=-0.081 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHcc-----ccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHH
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKI-----KCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL--KPDYPK 114 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-----~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l--~P~~~k 114 (337)
..|...=+.+.+.|+.++|...+.+.-+. .| +...|+-+-..+.+.|++++|+..+++..+. .| |.-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-----dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-Dvv 201 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-----TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-----CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHH
Confidence 45777778899999999999999764432 34 3467777888888999999999999988765 35 677
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q psy5660 115 VKLRAAQCLFHLKK-FEDCTHLCDELLK 141 (337)
Q Consensus 115 a~~r~a~a~~~lg~-~~eA~~~~~~al~ 141 (337)
.|-.+-.++...|+ .++|.+.++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88888888999898 4778777766653
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.66 E-value=13 Score=36.99 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=44.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
++...++.|++..|...+.+.-.-.....++.|-+|+++..+|+-++|...|+.+..
T Consensus 291 ~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333445779999999888765443345678899999999999999999999988875
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.54 E-value=29 Score=32.82 Aligned_cols=88 Identities=13% Similarity=0.056 Sum_probs=66.9
Q ss_pred hhHHHhhccccCC-CCCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHc---cccCCchHHHHHHHHHHHHHHHccCH
Q psy5660 20 PLVEGLQQLKYDP-LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLK---IKCADNDVNAQLYNNRAASNFFLKNY 95 (337)
Q Consensus 20 ~~lealqaL~~dp-~~~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~---~~p~~~~~~~~~~~nra~~~~~lg~~ 95 (337)
.+...|+.|..+- ...+..+..+.+..+...++..++|..|...++++-. ..+..+.+...++.-.|..+...++|
T Consensus 155 eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y 234 (445)
T 4b4t_P 155 EAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREY 234 (445)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 4445555554321 1245668889999999999999999999999998742 23445667888888899999999999
Q ss_pred HHHHHHHHHHHh
Q psy5660 96 RSCLTDCQIALK 107 (337)
Q Consensus 96 ~~Al~d~~~Al~ 107 (337)
.+|-.+|..++.
T Consensus 235 ~~a~~~y~e~~~ 246 (445)
T 4b4t_P 235 LEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988888765
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.89 E-value=21 Score=33.35 Aligned_cols=92 Identities=10% Similarity=-0.020 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccc---cCCchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhh-C--
Q psy5660 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK---CADNDVNAQLYNNRAASNF-FLKNYRSCLTDCQIALKL-K-- 109 (337)
Q Consensus 37 ~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~---p~~~~~~~~~~~nra~~~~-~lg~~~~Al~d~~~Al~l-~-- 109 (337)
+.-..+.+......++..|++..|...|++|.... +.++.+.+.+..--|..|+ ..++|..|..++-.|++- +
T Consensus 135 ~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~ 214 (394)
T 3txn_A 135 KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV 214 (394)
T ss_dssp THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc
Confidence 45677888889999999999999999999997664 2456778899999999999 899999999999998742 2
Q ss_pred --CCCHHHHHHHHHHHHhcCC
Q psy5660 110 --PDYPKVKLRAAQCLFHLKK 128 (337)
Q Consensus 110 --P~~~ka~~r~a~a~~~lg~ 128 (337)
|....+...++.|.+..++
T Consensus 215 ~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 215 DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHHcCC
Confidence 1122344556666666655
No 269
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=66.95 E-value=33 Score=27.79 Aligned_cols=66 Identities=6% Similarity=0.032 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHccccCC--ch--HHHHHH-HHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 42 TTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD--ND--VNAQLY-NNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 42 ~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~--~~--~~~~~~-~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
..-...|-.+|..|+|=+|=+.+..+....+.. .. +...+. .--|..|.+.||.+.|...+.+|+.
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344568889999999999999999888876543 21 223333 3344455566788888777777765
No 270
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=65.38 E-value=33 Score=24.89 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~ 91 (337)
..|......|..+|+.++|.+|+..++++..... ++.+..++-+-++.|.-+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te-n~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD-NEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc-CHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999999876543 344444443445666443
No 271
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=65.06 E-value=10 Score=29.15 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCCHHHhhcCCceEeeCCceEEEEEeC
Q psy5660 255 FDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVA 323 (337)
Q Consensus 255 ~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~l~~vl~~~~~~~~~~~~~~~v~~k 323 (337)
|.+++..+||.. ...++.++|.+.+|-+|-++...-|..+++..+ +|+++|||.-|
T Consensus 62 L~~kV~~lFp~L---------~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~----~~~lRlyVkek 117 (117)
T 2ktr_A 62 LLSRVAVLFPAL---------RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK----DDIFRIYIKEK 117 (117)
T ss_dssp HHHHHHHHCTTS---------CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC----SSEEEEEEEEC
T ss_pred HHHHHHHHcccc---------CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC----CCeEEEEEEeC
Confidence 788888899543 235799999999999999999999999998655 58999999865
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.15 E-value=18 Score=33.93 Aligned_cols=78 Identities=10% Similarity=-0.078 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKP---DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--NPTDSTVIDLRT 154 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P---~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~ 154 (337)
.++..+|.-+++.|++..|+..+.++..... .-...++...+++...+++..+...+.++..+ ...+...+..+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3556789999999999999999999887643 23578888899999999999999999999766 234455544444
Q ss_pred HHH
Q psy5660 155 SCI 157 (337)
Q Consensus 155 ~~~ 157 (337)
.+.
T Consensus 212 ~~~ 214 (429)
T 4b4t_R 212 TYY 214 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 273
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=60.12 E-value=24 Score=35.37 Aligned_cols=48 Identities=10% Similarity=0.249 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy5660 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160 (337)
Q Consensus 113 ~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~~ 160 (337)
..+....|+..+..|+|..|.+.++.++..+|+|.+++.+++.+.++.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l 496 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL 496 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999999999999999887763
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.74 E-value=17 Score=26.65 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy5660 79 AQLYNNRAASNFFLKNYRSCLTDCQI 104 (337)
Q Consensus 79 ~~~~~nra~~~~~lg~~~~Al~d~~~ 104 (337)
+-.+..||..+++-|+|++||.+.++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHH
Confidence 34444555555555555555554444
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=59.24 E-value=9.4 Score=28.16 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHccccC
Q psy5660 43 TYKDEGNFNFKCNKYRNAIINYTEGLKIKCA 73 (337)
Q Consensus 43 ~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~ 73 (337)
.-...|..++.+|+++.|+.++.+||.+.|+
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3457899999999999999999999999886
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.23 E-value=35 Score=35.67 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHHc
Q psy5660 45 KDEGNFNFKCNKYRNAIINYTEGLK 69 (337)
Q Consensus 45 k~~Gn~~~k~g~y~~Ai~~Y~~ai~ 69 (337)
.-+|..++..|++++|..++.+|-.
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 5699999999999999999998753
No 277
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.83 E-value=46 Score=23.72 Aligned_cols=20 Identities=10% Similarity=0.009 Sum_probs=11.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q psy5660 122 CLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 122 a~~~lg~~~eA~~~~~~al~ 141 (337)
-.-..|+|++|+..|..|++
T Consensus 25 e~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 25 ELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 33455666666666666654
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=58.64 E-value=30 Score=24.07 Aligned_cols=39 Identities=5% Similarity=0.097 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTS 155 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 155 (337)
..+|..+...|++++|...+-+|+.+-|.=..+...+.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 357888888899999999888899988887777665544
No 279
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=55.34 E-value=75 Score=25.36 Aligned_cols=60 Identities=18% Similarity=0.015 Sum_probs=36.0
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 82 YNNRAASNF-FLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 82 ~~nra~~~~-~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|.++|.-.+ ..|.-++--......+.-++-++.-++.+|.||..+|+..+|-+...+|-+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 444555444 334433333333333455666778888888888888888888877777664
No 280
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=54.54 E-value=20 Score=26.69 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=46.8
Q ss_pred CCHHHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCCHHHhhcCCceEeeCCceEEEEEeC
Q psy5660 253 VTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVA 323 (337)
Q Consensus 253 ~~~~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~l~~vl~~~~~~~~~~~~~~~v~~k 323 (337)
..|.+++..+|+.. ...++.++|.+.+|-+|-++-..-|..+++..+ +|+.++||.-|
T Consensus 45 ~~L~~~V~~lFp~l---------~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~----~~~lRlyVke~ 102 (102)
T 2kkc_A 45 ERLLSRVAVLFPAL---------RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK----DDIFRIYIKEK 102 (102)
T ss_dssp HHHHHHHHHHCTTS---------CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC----SSEEEEEEEEC
T ss_pred HHHHHHHHHHcccc---------CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC----CCeEEEEEEcC
Confidence 34677788888543 235799999999999999999999999998665 57889999754
No 281
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=51.02 E-value=26 Score=35.05 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy5660 82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCT 133 (337)
Q Consensus 82 ~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~ 133 (337)
...+|...+..|+|+-|...++.++..+|+|..|...+|.++.++|.-.+..
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~ 503 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA 503 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 4457777888999999999999999999999999999999999987554443
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.73 E-value=1e+02 Score=27.66 Aligned_cols=103 Identities=13% Similarity=-0.048 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc-ccCCc--------------------hHHHHHHHHHHHHHHHcc
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI-KCADN--------------------DVNAQLYNNRAASNFFLK 93 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~-~p~~~--------------------~~~~~~~~nra~~~~~lg 93 (337)
+.--|.-+.++...+-+.++++|++|++....+... -.... +.......++..++-...
T Consensus 27 G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 27 GDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 555577788889999999999999999885555432 11100 001111112222221111
Q ss_pred CHH-HHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy5660 94 NYR-SCLTDCQIALKL-------KPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137 (337)
Q Consensus 94 ~~~-~Al~d~~~Al~l-------~P~~~ka~~r~a~a~~~lg~~~eA~~~~~ 137 (337)
.-. .-....++|++- .-.++.-|...|..+..-|++.+|..++-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 100 011222333321 22467888899999999999999998874
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=50.46 E-value=13 Score=26.29 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
....|..+...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345888888899999999999999875
No 284
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=49.45 E-value=71 Score=23.04 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q psy5660 125 HLKKFEDCTHLCDELLK 141 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al~ 141 (337)
..|+|++|+..|..+++
T Consensus 27 ~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 27 AESRYQQALVCYQEGID 43 (93)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 44555555555555543
No 285
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=45.19 E-value=78 Score=30.31 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHhhCCC-----------CHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLK----------------------------NYRSCLTDCQIALKLKPD-----------YPKVKL 117 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg----------------------------~~~~Al~d~~~Al~l~P~-----------~~ka~~ 117 (337)
+.+.+++-||.+|+.|- =|+..+.|++.|+..=|. ..-|+.
T Consensus 107 ~~aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~a 186 (517)
T 3qnk_A 107 LTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSREKGRATKGAAYA 186 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCcccCcccHHHHHH
Confidence 45677778888887751 166788899999886553 125777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
.+|++++..++|++|+.+++.++..
T Consensus 187 llarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 187 LKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999853
No 286
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=44.65 E-value=27 Score=25.16 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYT 65 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~ 65 (337)
..-.+.|..|.+.|..+++.|++..|+.++.
T Consensus 29 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 29 EGFMRNIEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445678888888888888888888777654
No 287
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=42.77 E-value=58 Score=30.67 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 95 YRSCLTDCQIALKLKPD--------YPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~--------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|+..+.|++.|+.+=|. ..-|+..+|++++..|+|++|+.+++.++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 56788899999887553 235777889999999999999999988874
No 288
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=41.54 E-value=60 Score=31.01 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 95 YRSCLTDCQIALKLKPDY-----------PKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~-----------~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
|+..+.|++.|+.+=|.. .-|+..+|++++..++|++|+.++++++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 567788999998865531 347778899999999999999999999864
No 289
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=40.84 E-value=1.2e+02 Score=26.08 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=37.4
Q ss_pred CChHHHHHHHHHHHHHH-----HHhCc-----HHHHHHHHHHHHcc-----ccCCchHHHHHHHHHHHHHH-HccCHHHH
Q psy5660 35 NTPEELATTYKDEGNFN-----FKCNK-----YRNAIINYTEGLKI-----KCADNDVNAQLYNNRAASNF-FLKNYRSC 98 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~-----~k~g~-----y~~Ai~~Y~~ai~~-----~p~~~~~~~~~~~nra~~~~-~lg~~~~A 98 (337)
.+++...--+|-+|..+ |..|+ -+.|...|++|.++ .|.+| +.-.+..|-+.-|+ -+++.++|
T Consensus 117 ~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthP-irLGLaLNfSVFyyEiln~~~~A 195 (236)
T 3iqu_A 117 GDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNP-IRLGLALNFSVFHYEIANSPEEA 195 (236)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHTSSCHHHH
T ss_pred CchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-HHHHHHHHHHHHHHHHcCCHHHH
Confidence 45566666677777655 22332 24566666666543 33333 23344444554444 34666666
Q ss_pred HHHHHHHH
Q psy5660 99 LTDCQIAL 106 (337)
Q Consensus 99 l~d~~~Al 106 (337)
...+++|+
T Consensus 196 c~lAk~Af 203 (236)
T 3iqu_A 196 ISLAKTTF 203 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555543
No 290
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=40.79 E-value=60 Score=30.65 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 95 YRSCLTDCQIALKLKPDY--------PKVKLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~~--------~ka~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
|+..+.|++.|+.+=|.. .-|+..+|++++..|+|++|+.+++.++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 567888999998875532 35777889999999999999999988875
No 291
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.36 E-value=93 Score=21.79 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=10.5
Q ss_pred HhcCCHHHHHHHHHHHHh
Q psy5660 124 FHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~al~ 141 (337)
-..|+|++|+..|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 345666666666665554
No 292
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.78 E-value=97 Score=23.52 Aligned_cols=43 Identities=7% Similarity=-0.087 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy5660 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144 (337)
Q Consensus 94 ~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P 144 (337)
.|++|..+..+||.+|-. |.-..++..|..++..+.+++.+..
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 356666666666666541 2223333344455555666666654
No 293
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=39.18 E-value=87 Score=24.72 Aligned_cols=65 Identities=15% Similarity=0.019 Sum_probs=39.1
Q ss_pred CCCCCCcCCCCCCCCCChhHHHhhccccCCCCCChH----HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHc
Q psy5660 3 KHPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENTPE----ELATTYKDEGNFNFKCNKYRNAIINYTEGLK 69 (337)
Q Consensus 3 ~~PlFm~~~p~~~~~~~~~lealqaL~~dp~~~~~~----e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~ 69 (337)
.+|.-|.. |++- -....++-|.+...-++...|. ..|..+...|..+...|+.+.|--.|-+.+.
T Consensus 2 ~~~~~~~~-~k~l-yl~~sle~L~k~~~~~d~~ipl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~ 70 (144)
T 2a9u_A 2 SMPAVASV-PKEL-YLSSSLKDLNKKTEVKPEKISTKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVT 70 (144)
T ss_dssp ------CC-CCCC-CSCSSHHHHHGGGCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCccccc-Cccc-cccCCHHHHHHhcccccccCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666663 3442 2344566776665433334443 4577888899999999999999988877554
No 294
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=39.04 E-value=0.078 Score=51.44 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy5660 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCL 123 (337)
Q Consensus 44 ~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~ 123 (337)
...-|.-+|..|.|+.|.-+|+. -+ -|..+|.|+.+||+|+.|++.+++| ++++.|-....++
T Consensus 147 iq~VGDrcf~e~lYeAAKilys~----is--------N~akLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~AC 209 (624)
T 3lvg_A 147 IQQVGDRCYDEKMYDAAKLLYNN----VS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 209 (624)
T ss_dssp THHHHHHHHHSCCSTTSSTTGGG----SC--------CCTTTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHh----Cc--------cHHHHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHH
Confidence 35789999999999999988873 12 2566899999999999999988776 6777787788888
Q ss_pred HhcCCHHHHHHHHHHH
Q psy5660 124 FHLKKFEDCTHLCDEL 139 (337)
Q Consensus 124 ~~lg~~~eA~~~~~~a 139 (337)
...+.+.-|--+--..
T Consensus 210 vd~~EfrLAqicGLni 225 (624)
T 3lvg_A 210 VDGKEFRLAQMCGLHI 225 (624)
T ss_dssp HHSCTTTTTTHHHHHH
T ss_pred hCchHHHHHHHhcchh
Confidence 8888888877664433
No 295
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=38.63 E-value=1.9e+02 Score=24.77 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHHHH-----HhC-----cHHHHHHHHHHHHcc-----ccCCchHHHHHHHHHHHHHHH-ccCHHHH
Q psy5660 35 NTPEELATTYKDEGNFNF-----KCN-----KYRNAIINYTEGLKI-----KCADNDVNAQLYNNRAASNFF-LKNYRSC 98 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~-----k~g-----~y~~Ai~~Y~~ai~~-----~p~~~~~~~~~~~nra~~~~~-lg~~~~A 98 (337)
.+++...--+|-+|..+- ..| --+.|...|++|+++ .|.+| +.-.+..|.+.-|+. +++.++|
T Consensus 114 ~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthP-irLgLaLN~SVF~yEil~~~~~A 192 (234)
T 2br9_A 114 NTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP-IRLGLALNFSVFYYEILNSPDRA 192 (234)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHTSCCHHHH
T ss_pred CchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCc-HHHHHHHHHHHHHHHHcCCHHHH
Confidence 345555666666666542 111 123455566666543 23322 233344444444443 4555555
Q ss_pred HHHHHHHH
Q psy5660 99 LTDCQIAL 106 (337)
Q Consensus 99 l~d~~~Al 106 (337)
...+++|+
T Consensus 193 ~~lAk~af 200 (234)
T 2br9_A 193 CRLAKAAF 200 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.60 E-value=1.8e+02 Score=30.33 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=65.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-hC----------------
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-LK---------------- 109 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-l~---------------- 109 (337)
....+...|.|+-|.+ .+...|.++ ... +-+|.|++..|++++|...+++|-. +.
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~---~~~-yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll 887 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDP---IAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 887 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSH---HHH-HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHH
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCCh---HHH-HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhcc
Confidence 5566777788776543 334445432 233 4499999999999999999987642 11
Q ss_pred ----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHH
Q psy5660 110 ----PD--YPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN-PTDSTV 149 (337)
Q Consensus 110 ----P~--~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~-P~~~~~ 149 (337)
+. ....|...+..+...+-++-+++..+.|++.- ++++..
T Consensus 888 ~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 888 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 934 (950)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHH
T ss_pred CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccc
Confidence 11 12355667888899999999999999999754 444443
No 297
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=38.58 E-value=91 Score=30.03 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHhhCCC-------------CHHH
Q psy5660 77 VNAQLYNNRAASNFFLK----------------------------NYRSCLTDCQIALKLKPD-------------YPKV 115 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg----------------------------~~~~Al~d~~~Al~l~P~-------------~~ka 115 (337)
+.+.+++-||.+|+.|- =|+..+.|++.|+..=|. -.-|
T Consensus 121 ~~aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA 200 (528)
T 3i4g_A 121 MIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAA 200 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCccccCCcccCCcCcHHHH
Confidence 46788888888888751 156677888888876662 1247
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
+..+|++++..++|++|..+++.++.
T Consensus 201 ~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 201 LAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 77889999999999999999998875
No 298
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.38 E-value=68 Score=30.51 Aligned_cols=91 Identities=5% Similarity=-0.080 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHccccCCc---------hHHHH---HHHHHHHHHHHccCHHHHHHHHHHHHhhCC----------CCH
Q psy5660 56 KYRNAIINYTEGLKIKCADN---------DVNAQ---LYNNRAASNFFLKNYRSCLTDCQIALKLKP----------DYP 113 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p~~~---------~~~~~---~~~nra~~~~~lg~~~~Al~d~~~Al~l~P----------~~~ 113 (337)
..++|.....++....-+|. .-... +-+++-.+|+++++..-|-...+..-...+ ..+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 46778888888887643321 11222 233566789999998888776654322221 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCC
Q psy5660 114 KVKLRAAQCLFHLKKFEDCTHLCDELLKE-NPTD 146 (337)
Q Consensus 114 ka~~r~a~a~~~lg~~~eA~~~~~~al~l-~P~~ 146 (337)
..+|-+|+.++..++|.+|..++..|++. .|.+
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66788999999999999999999999998 6654
No 299
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=37.64 E-value=62 Score=26.97 Aligned_cols=61 Identities=7% Similarity=-0.039 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCch-HHHHHHHHHHHHHHHccCHH
Q psy5660 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADND-VNAQLYNNRAASNFFLKNYR 96 (337)
Q Consensus 36 ~~~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~-~~~~~~~nra~~~~~lg~~~ 96 (337)
+..+.+.-..-.|..++-+++|.+|-.++++|+...|.... ....++.-+-.|.+-+|.+.
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45578888889999999999999999999999998776431 12223333444556667743
No 300
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=36.76 E-value=49 Score=24.27 Aligned_cols=37 Identities=5% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy5660 118 RAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT 154 (337)
Q Consensus 118 r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 154 (337)
.+|..+...|+++.|+.++-+|+.+-|.=..+...+.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677777778888888877778777766555554443
No 301
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=36.30 E-value=64 Score=30.68 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHhhCCC--------CHHHHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLK----------------------------NYRSCLTDCQIALKLKPD--------YPKVKLRAA 120 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg----------------------------~~~~Al~d~~~Al~l~P~--------~~ka~~r~a 120 (337)
+.+.++.-||.+|+.|- =|+..+.|++.|+.+=|. -.-|+..+|
T Consensus 108 ~~aEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~alla 187 (481)
T 3jq1_A 108 VKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPITNKIGKPTQGAAYAALG 187 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSEECCCCCCSSCCCSCCCEECHHHHHHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeeccCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHH
Confidence 46788888888888751 177888999999886553 234777889
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q psy5660 121 QCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 121 ~a~~~lg~~~eA~~~~~~al~ 141 (337)
++++..++|++|+..++.++.
T Consensus 188 rvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 188 KIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 999999999999999988763
No 302
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=36.28 E-value=72 Score=30.17 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 95 YRSCLTDCQIALKLKPD--------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~--------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
|+..+.|++.|+.+=|. ..-|+..+|++++..|+|++|+.+++.++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 67788899999887553 2357778899999999999999999998864
No 303
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=36.25 E-value=49 Score=23.83 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHH
Q psy5660 38 EELATTYKDEGNFNFKCNKYRNAIINYT 65 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~ 65 (337)
.+.|..|.+.|..+++.|++..|+.++.
T Consensus 36 l~mA~~Y~~Da~~fl~kGD~v~Ala~is 63 (87)
T 2pmr_A 36 VERALNYRDDSVYYLEKGDHITSFGCIT 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4667788888888888888887777654
No 304
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.70 E-value=57 Score=24.82 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHhhCC
Q psy5660 95 YRSCLTDCQIALKLKP 110 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P 110 (337)
|+..|..+.++|.+..
T Consensus 45 Yk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 45 YKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhccccc
Confidence 4445555666666654
No 305
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.64 E-value=94 Score=25.83 Aligned_cols=40 Identities=5% Similarity=-0.005 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q psy5660 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL 117 (337)
Q Consensus 78 ~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~ 117 (337)
....++-+|..++..++|.+|-.++..|+...|.......
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k 52 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNK 52 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHH
Confidence 4567777999999999999999999999999887654433
No 306
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=35.18 E-value=1.2e+02 Score=32.25 Aligned_cols=92 Identities=12% Similarity=-0.031 Sum_probs=63.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------------------
Q psy5660 47 EGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL------------------ 108 (337)
Q Consensus 47 ~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l------------------ 108 (337)
....+++.+.|+-|.+.- ...+.++ ...+-+|.|++..|++++|...+.+|-.-
T Consensus 818 l~~~l~~~~~~~~~~~l~----~~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLI----GWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHH----HHSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHh----hhccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 334566677776665422 2333322 23355999999999999999999887321
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy5660 109 -----KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146 (337)
Q Consensus 109 -----~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~ 146 (337)
.......|+.....+...+-++.+++..+.|++..+.+
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~ 932 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD 932 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC
Confidence 11123556677888889999999999999999886433
No 307
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.95 E-value=72 Score=23.12 Aligned_cols=60 Identities=10% Similarity=-0.042 Sum_probs=36.0
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHccccCCch--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADND--VNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 46 ~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~--~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
..|-.+|..|+|=+|=+.+...-...+.... +...+..--|..+.+.||. |...+.+|+.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4677788888888887777777766543211 2233333334445556676 6666666655
No 308
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=34.68 E-value=60 Score=30.84 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHcc----------------------------CHH-HHHHHHHHHHhh-CCC--------CHHHHHH
Q psy5660 77 VNAQLYNNRAASNFFLK----------------------------NYR-SCLTDCQIALKL-KPD--------YPKVKLR 118 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg----------------------------~~~-~Al~d~~~Al~l-~P~--------~~ka~~r 118 (337)
+.+.++.-||.+|+.|= =|+ ..+.|++.|+.. -|. ..-|+..
T Consensus 114 ~~aEa~flRA~~Yf~L~~~~G~VPl~~~~~~~~~~~~~~r~~~~evy~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~al 193 (482)
T 3otn_A 114 YMAEVKFMRALYYFYLVRIFGDVPKITTVQSELGELQVSRAPVKEIYDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKAL 193 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSBCCCCSCGGGCSCSSCCCBCHHHHHHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcceeCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHH
Confidence 46788888888888751 166 677889999886 341 2356677
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHHHh
Q psy5660 119 AAQCLFHLK---------KFEDCTHLCDELLK 141 (337)
Q Consensus 119 ~a~a~~~lg---------~~~eA~~~~~~al~ 141 (337)
+|++++..+ +|++|+..++.++.
T Consensus 194 larvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 194 LADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 788888777 78888888888875
No 309
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=34.50 E-value=1.4e+02 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHhcC
Q psy5660 95 YRSCLTDCQIALKL-KPDYPKVKLRAAQCLFHLK 127 (337)
Q Consensus 95 ~~~Al~d~~~Al~l-~P~~~ka~~r~a~a~~~lg 127 (337)
|+.|+..++++-.- +|..++-+...++-|...|
T Consensus 455 Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 455 YKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 45555555555422 2333444444444443333
No 310
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=33.90 E-value=2.2e+02 Score=24.76 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHH-----HhC-----cHHHHHHHHHHHHccc----cCCchHHHHHHHHHHHHHHH-ccCHHHHH
Q psy5660 35 NTPEELATTYKDEGNFNF-----KCN-----KYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFF-LKNYRSCL 99 (337)
Q Consensus 35 ~~~~e~A~~~k~~Gn~~~-----k~g-----~y~~Ai~~Y~~ai~~~----p~~~~~~~~~~~nra~~~~~-lg~~~~Al 99 (337)
.+++..+--+|-+|..+- ..| --+.|...|++|+++. |.+| +.-.+..|.+.-|+. +++.++|.
T Consensus 140 ~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~L~pthP-irLGLaLNfSVFyYEiln~~~~Ac 218 (260)
T 2npm_A 140 TSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKDLEPTHP-IRLGLALNFSVFHYEILNEPRAAI 218 (260)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345566666677776542 111 1245667777776543 3322 344445555555553 56666666
Q ss_pred HHHHHHH
Q psy5660 100 TDCQIAL 106 (337)
Q Consensus 100 ~d~~~Al 106 (337)
..+++|+
T Consensus 219 ~lAk~Af 225 (260)
T 2npm_A 219 DMAKEAF 225 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 311
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=33.57 E-value=2.2e+02 Score=24.19 Aligned_cols=69 Identities=7% Similarity=-0.055 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHH-----HHhCcHHHHHHHHHHHHcc-----ccCCchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Q psy5660 38 EELATTYKDEGNFN-----FKCNKYRNAIINYTEGLKI-----KCADNDVNAQLYNNRAASNF-FLKNYRSCLTDCQIAL 106 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~-----~k~g~y~~Ai~~Y~~ai~~-----~p~~~~~~~~~~~nra~~~~-~lg~~~~Al~d~~~Al 106 (337)
+...--+|-+|..+ |..|+-+.|...|+.|.++ .|.+| +.-.+..|.+..|+ -+++.++|...+++|+
T Consensus 117 EskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthP-irLGLaLNfSVFyYEIln~p~~Ac~lAk~Af 195 (227)
T 2o8p_A 117 FSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQ-LPLGFIQNLAYILSEKYGEKKQVFNMLNSLG 195 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGG-SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56677777888765 3456778899999998864 34433 34456666776666 5788888988888886
Q ss_pred h
Q psy5660 107 K 107 (337)
Q Consensus 107 ~ 107 (337)
.
T Consensus 196 d 196 (227)
T 2o8p_A 196 K 196 (227)
T ss_dssp H
T ss_pred H
Confidence 5
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.17 E-value=2e+02 Score=23.11 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=45.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHH-HHHHH--HhcCCHHHHHHHHHHHHhh
Q psy5660 85 RAASNFFLKNYRSCLTDCQIALKLKPDY------PKVKLR-AAQCL--FHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 85 ra~~~~~lg~~~~Al~d~~~Al~l~P~~------~ka~~r-~a~a~--~~lg~~~eA~~~~~~al~l 142 (337)
.|..++..|+|-+|-+.++.+-...+.. .++++. +|.++ ...|+...|...+.+++..
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667777899999999999998876655 456666 65554 4569999999999999873
No 313
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=29.72 E-value=2.2e+02 Score=26.96 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHc----c---------------------CHHHHHHHHHHHHhhCCCC---------HHHHHHHHH
Q psy5660 76 DVNAQLYNNRAASNFFL----K---------------------NYRSCLTDCQIALKLKPDY---------PKVKLRAAQ 121 (337)
Q Consensus 76 ~~~~~~~~nra~~~~~l----g---------------------~~~~Al~d~~~Al~l~P~~---------~ka~~r~a~ 121 (337)
.+.+.++.-||.+|+.| | =|+..+.|++.|+..=|.. .-|+..+|+
T Consensus 117 ~~~aEa~flRA~~Yf~L~~~~G~VP~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allar 196 (499)
T 3jys_A 117 SYIAQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLAR 196 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCBCCCTTSCCSSCCBCCHHHHHHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceecccCCCCCCCcCCHHHHHHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHH
Confidence 35788888999998876 1 1667788999998765532 246666777
Q ss_pred HHH------hcCCHHHHHHHHHHHHh
Q psy5660 122 CLF------HLKKFEDCTHLCDELLK 141 (337)
Q Consensus 122 a~~------~lg~~~eA~~~~~~al~ 141 (337)
+++ ..++|++|+.++++++.
T Consensus 197 vyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 197 MYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHhhhhccChhHHHHHHHHHHHHHh
Confidence 777 57899999999999984
No 314
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.97 E-value=1.5e+02 Score=20.73 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy5660 117 LRAAQCLFHLKKFEDCTHLCDELLK 141 (337)
Q Consensus 117 ~r~a~a~~~lg~~~eA~~~~~~al~ 141 (337)
..+|+=+..+|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566667777788888887777764
No 315
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=28.92 E-value=56 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|+.|.+.|..++..|+..+|-+-|-+|.+.
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999888875
No 316
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=28.14 E-value=1.2e+02 Score=28.47 Aligned_cols=53 Identities=8% Similarity=0.026 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHccccCCc----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q psy5660 57 YRNAIINYTEGLKIKCADN----DVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLK 109 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~----~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l~ 109 (337)
|+..+.-++.|+..-|... --...++.-+|.+++..|+|.+|+..|+++|...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 5666677777777655321 1256788889999999999999999999999753
No 317
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=28.07 E-value=1.1e+02 Score=28.61 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHccccCCc----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 57 YRNAIINYTEGLKIKCADN----DVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~~----~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
|+..+..++.|+..-|... --...++.-+|.+++..|+|.+|+..|+.+|.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 5566666777776554321 12567888899999999999999999999985
No 318
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=28.05 E-value=40 Score=24.42 Aligned_cols=17 Identities=18% Similarity=0.081 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHcccc
Q psy5660 56 KYRNAIINYTEGLKIKC 72 (337)
Q Consensus 56 ~y~~Ai~~Y~~ai~~~p 72 (337)
.|++|..+.++||..+-
T Consensus 12 ~h~~AF~~Is~aL~~DE 28 (89)
T 3eab_A 12 FHKQAFEYISIALRIDE 28 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 45667777777766543
No 319
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=27.80 E-value=74 Score=30.05 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 95 YRSCLTDCQIALKLKPD-------------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 95 ~~~Al~d~~~Al~l~P~-------------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
|+..+.|++.|+.+=|. ..-|+..+|++++.+++|++|+.+++.++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 67788899998875332 2246778899999999999999999999853
No 320
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.67 E-value=1.2e+02 Score=28.69 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHcc----------------------------CHHHHHHHHHHHHhhCCC-----------------
Q psy5660 77 VNAQLYNNRAASNFFLK----------------------------NYRSCLTDCQIALKLKPD----------------- 111 (337)
Q Consensus 77 ~~~~~~~nra~~~~~lg----------------------------~~~~Al~d~~~Al~l~P~----------------- 111 (337)
+.+.++.-||.+|+.|= =|+..+.|++.|+.+=|.
T Consensus 110 ~~gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~ 189 (478)
T 3hdx_A 110 DIAQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQW 189 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcccccccccccc
Confidence 46788888888888751 167788899999886442
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 112 ------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 112 ------~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
..-|+..+|++++..|+|++|+.++++++..
T Consensus 190 ~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 190 QGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 1246677899999999999999999988853
No 321
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=26.95 E-value=3.8e+02 Score=24.74 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHccccCCchHHHHHHHH-HHHH--------------H-HHccCHHHHHHHH
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN-RAAS--------------N-FFLKNYRSCLTDC 102 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~n-ra~~--------------~-~~lg~~~~Al~d~ 102 (337)
+.....-..|+-+...|+...|.-||--|=.++. ...+|.. .... + ..|.++-+=+..+
T Consensus 246 ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk-----~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl 320 (399)
T 2pm7_A 246 QRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDK-----VASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVF 320 (399)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHH-----HHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHH-----HHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHH
Confidence 6667777889999999999999999987744322 3344433 1100 0 1122222222334
Q ss_pred HHHHhhCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5660 103 QIALKLKP--D---YPKVKLRAAQCLFHLKKFEDCTHLCDE 138 (337)
Q Consensus 103 ~~Al~l~P--~---~~ka~~r~a~a~~~lg~~~eA~~~~~~ 138 (337)
+.++...+ . -.+.+...|..+...|+++.|.++++.
T Consensus 321 ~~a~~~~~~~~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 321 SNFINGSSTINNEQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HTTSCC---CCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhcCCCcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44432111 1 224566779999999999999999873
No 322
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=26.62 E-value=2.4e+02 Score=22.43 Aligned_cols=53 Identities=21% Similarity=-0.103 Sum_probs=36.1
Q ss_pred HHhCcHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 52 FKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 52 ~k~g~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
..+|+-++--+.+...+.-.+ .++.+...+|.+|-++|+-++|-+...+|-+-
T Consensus 102 v~~~KkDqLdki~~~~l~n~~----~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNE----VSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHhccCC----CChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344555555555554333222 25688888999999999999999988888754
No 323
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=26.36 E-value=2e+02 Score=27.19 Aligned_cols=66 Identities=9% Similarity=0.083 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHccC------------------------HHHHHHHHHHHHhhCCC----------CHHHHHHHHH
Q psy5660 76 DVNAQLYNNRAASNFFLKN------------------------YRSCLTDCQIALKLKPD----------YPKVKLRAAQ 121 (337)
Q Consensus 76 ~~~~~~~~nra~~~~~lg~------------------------~~~Al~d~~~Al~l~P~----------~~ka~~r~a~ 121 (337)
.+.+.+++-||.+|+.|=+ |+..+.|++.|+..=|. ..-|+..+|+
T Consensus 126 ~~~gEA~flRA~~Yf~Lv~~fG~VPl~~~~~~~~~~R~s~~evy~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allAr 205 (527)
T 3ckc_A 126 RQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRAR 205 (527)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSEEEECSSCSSSCCEEEEHHHHHHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccCCccccCCCcCCHHHHHHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHH
Confidence 3568889999999987611 67788999999886542 1356667788
Q ss_pred HHHhc------CCHHHHHHHHHHHHh
Q psy5660 122 CLFHL------KKFEDCTHLCDELLK 141 (337)
Q Consensus 122 a~~~l------g~~~eA~~~~~~al~ 141 (337)
+++.. ++|++|+++++.++.
T Consensus 206 vyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 206 LYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHhhhhccCchhHHHHHHHHHHHHh
Confidence 88764 899999999999985
No 324
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=26.03 E-value=34 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCeEEcCCCCCHHHhhc
Q psy5660 279 RLSIYYQDPNGKPQRVPTTSTLGEVLT 305 (337)
Q Consensus 279 ~~~~y~e~~~~~~~~v~~~~~l~~vl~ 305 (337)
-|.+|+++.+.+-+.|++.+|-.+|++
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~ 37 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCE 37 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHH
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHH
Confidence 578999999999999999999999986
No 325
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=25.90 E-value=1.3e+02 Score=28.35 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHccccCC----chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy5660 57 YRNAIINYTEGLKIKCAD----NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~----~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~ 107 (337)
|+..+.-++.|+..-|.. .--...++.-+|.+++-.|+|.+|+..|+.+|.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455555666666554432 112567888899999999999999999999986
No 326
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=31.59 E-value=15 Score=37.01 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy5660 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159 (337)
Q Consensus 116 ~~r~a~a~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~~ 159 (337)
.+..|+..+..|+|..|.+.++.++..+|+|.+++.+++.+.++
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~ 507 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQ 507 (668)
Confidence 34444445555555555555555555555555555555555444
No 327
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=25.63 E-value=2.8e+02 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhC
Q psy5660 129 FEDCTHLCDELLKEN 143 (337)
Q Consensus 129 ~~eA~~~~~~al~l~ 143 (337)
|+.|.+.|+++...+
T Consensus 19 YE~A~~~Ye~a~~ng 33 (199)
T 3ub0_A 19 YEKARADLEEAKKND 33 (199)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 455555566555544
No 328
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.01 E-value=1.4e+02 Score=28.43 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHccccCC-------chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q psy5660 57 YRNAIINYTEGLKIKCAD-------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108 (337)
Q Consensus 57 y~~Ai~~Y~~ai~~~p~~-------~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~l 108 (337)
|+..+..++.|+..-|.. ..-...++.-+|.+++..|+|.+|+..|+++|..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344455555555544321 1125678888999999999999999999999975
No 329
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=23.60 E-value=6.1e+02 Score=27.00 Aligned_cols=75 Identities=4% Similarity=-0.191 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCHHHHHH
Q psy5660 80 QLYNNRAASNFFLKNYRSCLTDCQIALK-----LKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE--NPTDSTVIDL 152 (337)
Q Consensus 80 ~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~ 152 (337)
..|+-+=.++.+.|+.++|...+....+ ..| ++..|-.+-..+...|++++|.+.++...+. .|+-.....+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3456666788899999999999876433 344 6889999999999999999999999999864 5765555555
Q ss_pred HHH
Q psy5660 153 RTS 155 (337)
Q Consensus 153 l~~ 155 (337)
+.-
T Consensus 207 I~g 209 (1134)
T 3spa_A 207 LQC 209 (1134)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 330
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=29.07 E-value=17 Score=36.49 Aligned_cols=53 Identities=9% Similarity=0.008 Sum_probs=42.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy5660 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHL 135 (337)
Q Consensus 83 ~nra~~~~~lg~~~~Al~d~~~Al~l~P~~~ka~~r~a~a~~~lg~~~eA~~~ 135 (337)
..+|...+..|+|+-|...++.++..+|+|..|...+|.++.++|.-.+..-+
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~~~ 517 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENALW 517 (668)
Confidence 34566667778899999999998888999988888888888888877666544
No 331
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Probab=22.91 E-value=47 Score=27.98 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCceEEEEEcCCCCeEEcCCCCC
Q psy5660 256 DSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQRVPTTST 299 (337)
Q Consensus 256 ~~~l~~~f~~~~~wd~~~~y~~~~~~~y~e~~~~~~~~v~~~~~ 299 (337)
-.-|-.+++.|+ .+...++||+.|.+|.+++|+|.+.
T Consensus 59 Hq~LL~llDSpL-------Nk~G~L~VYIhT~~~~lI~V~P~~R 95 (205)
T 3bbd_A 59 HISLLNILDSPI-------NHEKKLNIYIHTYDDKVLKINPETR 95 (205)
T ss_dssp HHHHHHHHTSHH-------HHTTCEEEEEEETTSEEEEECTTCC
T ss_pred HHHHHHHhcChH-------HHCCCeEEEEEecCCEEEEECCCCC
Confidence 344555555543 2357899999999999999999765
No 332
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.74 E-value=2.4e+02 Score=26.06 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC
Q psy5660 38 EELATTYKDEGNFNFKCN---KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK-----LK 109 (337)
Q Consensus 38 ~e~A~~~k~~Gn~~~k~g---~y~~Ai~~Y~~ai~~~p~~~~~~~~~~~nra~~~~~lg~~~~Al~d~~~Al~-----l~ 109 (337)
.+.+.--.+.=..++..| +|-.|+...-..=++.|...... ++..+.+||. .+
T Consensus 232 ~El~~LQq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~gr~~-------------------~l~L~~~AI~sa~~yY~ 292 (472)
T 3re2_A 232 IQLSQLQQELLWLLYDMGHIKTYPMAIANLGDLEEISPTPGRPP-------------------AEELFKEAITVAKREYS 292 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTSCC-------------------HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhccchhhCchhhcchhhHHhcCCCCCCCC-------------------HHHHHHHHHHHHHHHhc
Confidence 344444444555555555 35566666555555555422111 3333333333 24
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy5660 110 PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142 (337)
Q Consensus 110 P~~~ka~~r~a~a~~~lg~~~eA~~~~~~al~l 142 (337)
..++-.|.-+|-.+++.+++.+|++.+..+-..
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 556777888888999999999999988777644
No 333
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.98 E-value=2.5e+02 Score=21.01 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=7.6
Q ss_pred hcCCHHHHHHHHHHHH
Q psy5660 125 HLKKFEDCTHLCDELL 140 (337)
Q Consensus 125 ~lg~~~eA~~~~~~al 140 (337)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 3345555555444444
No 334
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=21.86 E-value=19 Score=31.55 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHcc
Q psy5660 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI 70 (337)
Q Consensus 39 e~A~~~k~~Gn~~~k~g~y~~Ai~~Y~~ai~~ 70 (337)
+.|..+..+|-.+=+.|+|.+|+.+|.+||+.
T Consensus 21 ~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 21 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45666667777777888888888888888875
No 335
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=21.07 E-value=1.8e+02 Score=25.46 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=8.4
Q ss_pred cCCHHHHHHHHHHHHh
Q psy5660 126 LKKFEDCTHLCDELLK 141 (337)
Q Consensus 126 lg~~~eA~~~~~~al~ 141 (337)
+++.++|+...++++.
T Consensus 210 ln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 210 LGNPEGAMKFANRAIQ 225 (268)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4555555555555543
Done!