RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5660
(337 letters)
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 103 bits (258), Expect = 7e-27
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 29 KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
+ +P + + A K + N FK Y NAI Y++ +++ N NA Y NR+ +
Sbjct: 1 RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLA 56
Query: 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
+ Y L D A++L Y K R A L KF + ++K P D
Sbjct: 57 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116
Query: 149 VIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQI 187
C +K + + ++A + ++ L I
Sbjct: 117 AKMKYQEC---NKIVKQKAFERAIAGDEHKRSVVDSLDI 152
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 100 bits (251), Expect = 2e-26
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
ELA K++GN FK Y A+ +Y E +K + NA LY+NRAA L ++
Sbjct: 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQR 65
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
L DC ++L + K +R A CL ++++ ++ L+ +P++ + +C
Sbjct: 66 ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 100 bits (252), Expect = 2e-26
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 14/147 (9%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
A K++GN F KY A Y + N + A Y NRA ++
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPE 60
Query: 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
L DC+ AL+L K QC ++ +++
Sbjct: 61 QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-------- 112
Query: 157 INKHKEILRNERKQAQQVKKEEKEKER 183
+ + + + A++ + E+ R
Sbjct: 113 --NFGDDIPSALRIAKKKRWNSIEERR 137
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 100 bits (250), Expect = 6e-26
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
+ EGN FKC Y A+ YT+ L + A A L+ NRAA + L++Y
Sbjct: 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYD 82
Query: 97 SCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
T+ A++ K R +Q L L + + + P + + +
Sbjct: 83 KAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 99.8 bits (249), Expect = 1e-25
Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 6/154 (3%)
Query: 32 PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
P P + K EGN +Y AI YT+ L I N +NRAA+
Sbjct: 2 PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSA 57
Query: 92 LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
+ D ++A + P Y K R F + ++ ++ ++ +
Sbjct: 58 SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117
Query: 152 LR--TSCINKHKEILRNERKQAQQVKKEEKEKER 183
R + K +E R A V
Sbjct: 118 KRGLETTKRKIEEANRGAEPPADDVDDAAGASRG 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 98.5 bits (246), Expect = 1e-25
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 29 KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
+ + +LA K++GN F+ Y A+ +YTE +K N +A+LY+NRAA
Sbjct: 4 HHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAAC 59
Query: 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDST 148
L ++ L DC+ ++L+P + K R A L +K + + + L + +
Sbjct: 60 YTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119
Query: 149 VIDLRTSC 156
D C
Sbjct: 120 AADGYQRC 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 96.1 bits (240), Expect = 9e-25
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
A K EGN K + A+ Y + +++ N NA + NRAA+ L NY
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----NPANAVYFCNRAAAYSKLGNYAGA 65
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
+ DC+ A+ + P Y K R L L K + + L+ +P + T
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
Query: 159 KHKE 162
K +E
Sbjct: 126 KLRE 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 95.3 bits (238), Expect = 2e-24
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
E K++GN +A+ Y+E +K+ + N LY+NR+A+ +Y+
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKL----DPHNHVLYSNRSAAYAKKGDYQKA 57
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
D + LKPD+ K R A L L +FE+ +E LK + + +
Sbjct: 58 YEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 99.2 bits (247), Expect = 3e-24
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 4/168 (2%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K++GN F KY A Y + N + A Y NRA ++ L
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALA 59
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
DC+ AL+L K QC ++ +++ +
Sbjct: 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 161 KEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSD 208
+ R + +++ +E + + ++I + + + + + D
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 93.1 bits (232), Expect = 1e-23
Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A + EG F + + NA+ YTE +K +A+ Y+NRAA+ L ++ +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNRAAALAKLMSFPEAIA 59
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
DC A++ P++ + +R A +K++ D ++ +
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG----------- 108
Query: 161 KEILRNERKQAQQVKKEEKEK 181
+ R+ Q K +++
Sbjct: 109 ----SSAREIDQLYYKASQQR 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 93.6 bits (233), Expect = 2e-23
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 31/166 (18%)
Query: 35 NTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--------------KCADNDV 77
N ++ + +GN F Y+ AI Y + L +
Sbjct: 2 NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
N LY N + + + LK + K R A+ K ++
Sbjct: 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121
Query: 138 ELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
LL+ +P ++ E K + + E+K R
Sbjct: 122 LLLRNHPAA--------------ASVVAREMKIVTERRAEKKADSR 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 94.8 bits (236), Expect = 2e-23
Identities = 36/180 (20%), Positives = 59/180 (32%), Gaps = 20/180 (11%)
Query: 24 GLQQLKYDPLENTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------ 74
Q K + T EE A K+EGN FK N+ AI+ Y E L
Sbjct: 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77
Query: 75 ------NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK 128
++ N A K+Y + LK+ + K + +
Sbjct: 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 129 FEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQ-----AQQVKKEEKEKER 183
E+ + NP + + + C+NK KE + ++ + EEK+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKNSA 197
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 88.5 bits (220), Expect = 8e-22
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 26/148 (17%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+ A K+ GN +K + A+ +Y + ++ + N N+AA F +Y C
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKC 57
Query: 99 LTDCQIALKLKPDYPKVK-------LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
C+ A+++ + + R F +K++D H ++ L E+ T
Sbjct: 58 RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT------ 111
Query: 152 LRTSCINKHKEILRNERKQAQQVKKEEK 179
++L+ ++ + +K++E+
Sbjct: 112 ---------PDVLKKCQQAEKILKEQER 130
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 85.1 bits (211), Expect = 8e-21
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
K++GN FK YR A+ Y + + N Y+N+A + L Y +
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----QPQNPVGYSNKAMALIKLGEYTQAIQ 59
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
CQ L+ V +R+ + L+ + + E
Sbjct: 60 MCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEV 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 88.4 bits (219), Expect = 5e-20
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 14/166 (8%)
Query: 31 DPLENTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKI-----------KCADND 76
+ E EE +T K+ G FK KY+ A++ Y + +
Sbjct: 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQA 193
Query: 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
+ + N A + L+ + + + C AL+L + K R + + FE
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
Query: 137 DELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKE 182
++L+ P + C + + L E+K + + E+E
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE 299
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 82.7 bits (205), Expect = 1e-19
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 35 NTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKN 94
N + A KD GN +K + A ++Y + +++ + N YNN+AA F K
Sbjct: 2 NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKK 57
Query: 95 YRSCLTDCQIALKLKPD-------YPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ C+ C+ A+++ + K RA L E
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117
Query: 148 TVIDLR 153
V ++
Sbjct: 118 LVKKVK 123
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 87.8 bits (218), Expect = 1e-19
Identities = 16/139 (11%), Positives = 46/139 (33%)
Query: 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
+ + +Y +A Y +K + + + + + + C
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
L+++PD A+ + +++ + + N D + + K+
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379
Query: 164 LRNERKQAQQVKKEEKEKE 182
+ + + VK+ K++E
Sbjct: 380 QKRDYYKILGVKRNAKKQE 398
Score = 77.0 bits (190), Expect = 8e-16
Identities = 23/152 (15%), Positives = 57/152 (37%), Gaps = 10/152 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+ + G + +A+ + + + N Y RA + ++ L
Sbjct: 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 81
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
D ++LK D+ +L+ L K ++ ++LK NP+++ + + S + K
Sbjct: 82 DLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ-SQLIKS 140
Query: 161 KEILRNERKQAQQVKKEEKEK-----ERVLQI 187
E+ R + + +++L++
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Score = 58.5 bits (142), Expect = 8e-10
Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 50/226 (22%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
++ + G+ K K A ++ + LK ++N+
Sbjct: 87 IQLKM------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140
Query: 78 -NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
Q ++A + F +Y + + L++ +++ A+C +
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 137 DELLKENPTDSTVIDLR-------------TSCINK-------HKEILRNERKQAQQVKK 176
K ++ S + + HK + ++ VKK
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ----VKK 256
Query: 177 EEKEKERVLQIIRERKIKLATSGKGDLKSFS---DLEPNFPEITLR 219
K E ++IR+ + A + EP+ E T+R
Sbjct: 257 LNKLIESAEELIRDGRYTDA------TSKYESVMKTEPSIAEYTVR 296
Score = 55.1 bits (133), Expect = 1e-08
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
+K +P + E + + + K K AI +E L++ N +RA
Sbjct: 284 MKTEP--SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM----EPDNVNALKDRAE 337
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ + Y + D + A + + +++ + LK+ + + +K N
Sbjct: 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK- 396
Query: 148 TVIDLRTSCINKHKEILRNERKQAQQ 173
+EI++ RK A Q
Sbjct: 397 -------------QEIIKAYRKLALQ 409
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 85.4 bits (212), Expect = 7e-19
Identities = 15/138 (10%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
+ + +Y +A Y +K + + + + + + C
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296
Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
L+++PD A+ + +++ + + N D +
Sbjct: 297 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI-------------- 342
Query: 164 LRNERKQAQQVKKEEKEK 181
R ++AQ++ K+ +++
Sbjct: 343 -REGLEKAQRLLKQSQKR 359
Score = 72.7 bits (179), Expect = 1e-14
Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 10/152 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+ + G + +A+ + + + N Y RA + ++ L
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALP 58
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
D + LK D+ +L+ L K ++ ++LK NP++ + S + K
Sbjct: 59 DLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE-SQLVKA 117
Query: 161 KEILRNERKQAQQVKKEEKEK-----ERVLQI 187
E+ R + + +++L++
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEV 149
Score = 55.4 bits (134), Expect = 7e-09
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
+K +P + E + + + K K AI +E L+++ ++VNA +RA
Sbjct: 261 MKTEP--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNA--LKDRAE 314
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFE 130
+ + Y + D + A + + +++ + LK+ +
Sbjct: 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357
Score = 52.7 bits (127), Expect = 6e-08
Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 50/226 (22%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
+ + G+ K K A ++ + LK ++ +
Sbjct: 64 IALKM------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 78 -NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
Q ++A F +Y + +T L++ +++ A+C +
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 137 DELLKENPTDSTVIDLR-------------TSCINK-------HKEILRNERKQAQQVKK 176
K ++ S + + HK + ++ VKK
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ----VKK 233
Query: 177 EEKEKERVLQIIRERKIKLATSGKGDLKSFS---DLEPNFPEITLR 219
K E ++IR+ + A + EP+ E T+R
Sbjct: 234 LNKLIESAEELIRDGRYTDA------TSKYESVMKTEPSVAEYTVR 273
Score = 39.6 bits (93), Expect = 0.001
Identities = 7/70 (10%), Positives = 18/70 (25%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
+ + + L+ A+ PD R A + K +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 138 ELLKENPTDS 147
+++ +
Sbjct: 62 KVIALKMDFT 71
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 81.2 bits (200), Expect = 2e-17
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI-------------KCADNDVNAQLYNNRAA 87
A K +GN FK K A+ Y + + V + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
LK Y + C I L + PK R + L + + + K P D
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
Query: 148 TVIDLRTSCINKHKEILRNERKQAQ----QVKKEEKEKE 182
+ + + K + + +++ + + + +
Sbjct: 299 AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 81.3 bits (201), Expect = 3e-17
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+ A K + N FK Y NAI Y++ +++ N NA Y NR+ + + Y
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYA 59
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
L D A++L Y K R A L KF + ++K P D C
Sbjct: 60 LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-- 117
Query: 159 KHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKG 201
+I++ +K ++ ++ K V+ + + + G
Sbjct: 118 --NKIVK--QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 78.2 bits (193), Expect = 3e-16
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
++ A KD+GN F+ KY +AI Y L++ + Y+N +A + + +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKK 57
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL-LKENPTDSTVID----- 151
+ AL+LKPDY KV LR A L KF D L L + D+++
Sbjct: 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117
Query: 152 LRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSF 206
L ++K KE + A E + + ++ + TS F
Sbjct: 118 LNKQAMSKLKEKF-GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Score = 69.8 bits (171), Expect = 2e-13
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 29 KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
K + E E+LA + + G F F N A + + +++ Y A
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALI 279
Query: 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ ALKL + V Q F L+ ++ D+ + +P +
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338
Score = 60.1 bits (146), Expect = 3e-10
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 4/132 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
++ Y G NF Y A ++ + ++ + N Y A + + C
Sbjct: 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL----DPENIFPYIQLACLAYRENKFDDC 357
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
T A + P+ P+V A+ L F+ D ++ + +
Sbjct: 358 ETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
Query: 159 KHKEILRNERKQ 170
K + RN +
Sbjct: 418 KATLLTRNPTVE 429
Score = 59.8 bits (145), Expect = 4e-10
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 14/148 (9%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA---------SN 89
E N + A+ Y +++ + +Y A N
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIEL----ENKLDGIYVGIAPLVGKATLLTRN 425
Query: 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
++N+ + A KL P + K+ AQ + ++ L +E T
Sbjct: 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
Query: 150 IDLRTSC-INKHKEILRNERKQAQQVKK 176
+ T K ++ +R++ A+++++
Sbjct: 486 LQAITFAEAAKVQQRIRSDPVLAKKIQE 513
Score = 58.2 bits (141), Expect = 1e-09
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 4/107 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+Y N + + LK+ + N+ +Y +R NF L+NY
Sbjct: 270 VNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFILQNYDQAGK 325
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
D A +L P+ ++ A + KF+DC L E ++ P
Sbjct: 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372
Score = 33.9 bits (78), Expect = 0.060
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 8/111 (7%)
Query: 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYN------NRAASNFF--LKNY 95
F K NY E + + + LY ++A +F + +
Sbjct: 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219
Query: 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
L KLK F + ++ P
Sbjct: 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 76.1 bits (188), Expect = 4e-16
Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR 85
+ +P E A + EG F + + NA+ YTE +K +A+ Y+NR
Sbjct: 130 AEAYVNP------EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDARGYSNR 179
Query: 86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
AA+ L ++ + DC A++ P++ + +R A +K++ D ++
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239
Query: 146 DSTVIDLRTSCINKHKEILRNERKQAQ 172
+ + +EI + K +Q
Sbjct: 240 VNNG--------SSAREIDQLYYKASQ 258
Score = 64.5 bits (158), Expect = 4e-12
Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+A K EGN +K ++ AI +Y + ++ + NNRAA+ + Y +
Sbjct: 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----HKDITYLNNRAAAEYEKGEYETA 57
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
++ A++ + ++ +
Sbjct: 58 ISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90
Score = 45.2 bits (108), Expect = 1e-05
Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
E+ YK + + + + + ++ + + A L+N
Sbjct: 70 EMRADYKVISKSFARIGNAYHKLGDLKKTIEY-----YQKSLTEHRTADILTKLRNAEKE 124
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
L + + P+ + + F + + E++K P D+
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA 173
Score = 41.4 bits (98), Expect = 2e-04
Identities = 8/70 (11%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
A + + + + A +L D + RAA + ++E +
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAA-AEYEKGEYETAISTLN 62
Query: 138 ELLKENPTDS 147
+ +++
Sbjct: 63 DAVEQGREMR 72
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 73.9 bits (181), Expect = 8e-15
Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 15/189 (7%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKI-----------KCADNDVNAQLYNNRAA 87
E A K++G FK KY A+I Y + + A + N A
Sbjct: 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
L+ Y + C AL L K R + + +FE +++L+ NP +
Sbjct: 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 148 TVIDLRTSCINKHKEILRNERKQA----QQVKKEEKEKERVLQIIRERKIKLATSGKGDL 203
+ C K KE +R+ ++ +++ ++E + ++ + D
Sbjct: 386 AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDS 445
Query: 204 KSFSDLEPN 212
++ + +P
Sbjct: 446 QAMEEEKPE 454
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 73.6 bits (181), Expect = 1e-14
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 10/176 (5%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
+ + A K+ GN F + AI Y +++ + Y+N +A
Sbjct: 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTG 73
Query: 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID-- 151
+ + AL++KPD+ K LR A L F D L D I+
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPM 133
Query: 152 ----LRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDL 203
L + E L + + QV I + + +
Sbjct: 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189
Score = 67.1 bits (164), Expect = 2e-12
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
+ E A G F+F N +A + E + + Y A +
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYIFLALTL 286
Query: 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+N + Q A+ L P+YP Q F L+ +++ + NP +
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344
Score = 56.3 bits (136), Expect = 6e-09
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+Y + + + + + N Y +R F L++Y++
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQDYKNAKE 331
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
D Q A L P+ ++ A L+ KF + +E + PT V
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380
Score = 55.9 bits (135), Expect = 8e-09
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 4/143 (2%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
E TY G F Y+NA ++ + + N N Y A + +
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL----NPENVYPYIQLACLLYKQGKFTES 363
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
P P+V A+ L F+ D + + I
Sbjct: 364 EAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
Query: 159 KHKEILRNERKQAQQVKKEEKEK 181
K + R + Q+ +E+
Sbjct: 424 KATILARQSSQDPTQLDEEKFNA 446
Score = 52.8 bits (127), Expect = 8e-08
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
+ N + + + + A NR F KN+ + Q A++L P+ P
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 116 -KLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+A C E + L+ P S
Sbjct: 62 YSNISA-CYISTGDLEKVIEFTTKALEIKPDHS 93
Score = 46.3 bits (110), Expect = 1e-05
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 20/122 (16%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
E Y +K K+ + + E ++ A ++ +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLK----FPTLPEVPTFFAEILTDRGDFDTA 397
Query: 99 LTDCQIALKLKPDYPKV----------------KLRAAQCLFHLKKFEDCTHLCDELLKE 142
+ IA +L+ K+ + +KF L + +
Sbjct: 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457
Query: 143 NP 144
+P
Sbjct: 458 DP 459
Score = 45.9 bits (109), Expect = 1e-05
Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK------------CADNDVNAQLYNNRA 86
L + AI Y +++ +++
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435
Query: 87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + + + + A +L P + K+ AQ ++K ++ L ++ T
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495
Query: 147 S 147
Sbjct: 496 D 496
Score = 42.8 bits (101), Expect = 1e-04
Identities = 14/143 (9%), Positives = 33/143 (23%), Gaps = 20/143 (13%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLK---------------- 69
+ L ++ E L+ + + L+
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 70 ----IKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFH 125
++ + + Y S L+ + L+ + F
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 126 LKKFEDCTHLCDELLKENPTDST 148
D L E + +PT ++
Sbjct: 256 KNNLLDAQVLLQESINLHPTPNS 278
Score = 40.5 bits (95), Expect = 6e-04
Identities = 10/106 (9%), Positives = 27/106 (25%), Gaps = 13/106 (12%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+ + K+ AI T+ ++ A A ++
Sbjct: 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQA--KIGLAQLKLQMEKIDEA 481
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+ + + L + F + + + L+ +P
Sbjct: 482 IELFEDSAILARTMDE--------KLQATTFAEAAKI-QKRLRADP 518
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 64.7 bits (158), Expect = 6e-12
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 27/157 (17%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLK-----IKCADNDVNAQL-------YNNRA 86
++ K+ GN FK + AI YT+ L+ A++ A+L N
Sbjct: 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 280
Query: 87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
A + +++ + C AL++ P K R AQ LK+++ + + P D
Sbjct: 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340
Query: 147 STVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
+ + E + +Q K +K+KE+
Sbjct: 341 KAI---------------QAELLKVKQKIKAQKDKEK 362
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 57.1 bits (138), Expect = 2e-10
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 6/138 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
+ + L Y G ++ K+ +A + + + +A+ + A L
Sbjct: 11 RGLSEDTLEQLYA-LGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQSL 65
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152
Y L + + P+ AA+C L + L
Sbjct: 66 GLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 153 RTSCINKHKEILRNERKQ 170
E + + +
Sbjct: 126 AARA-GAMLEAVTARKDR 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 55.2 bits (133), Expect = 1e-09
Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 5/112 (4%)
Query: 36 TPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY 95
+ + Y + + A + + + N AA + +
Sbjct: 32 PDDMMDDIYS-YAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQF 86
Query: 96 RSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ +A L + QC LK + +++ + +
Sbjct: 87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 56.8 bits (137), Expect = 4e-09
Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 4/125 (3%)
Query: 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLY 82
+ + +L Y + +Y + + ++ L
Sbjct: 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING----LEKSSDLL 308
Query: 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKE 142
+A + F + L L++ P V L + + ++L+
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 143 NPTDS 147
+P +
Sbjct: 369 HPEKA 373
Score = 53.3 bits (128), Expect = 6e-08
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 3/116 (2%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVN---AQLYNNRAASNFFLKNYRSCLTDCQI 104
G F + + AI ++ L + A + N + LK Y + +
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKH 160
L L + V A H K E L +P + DL + ++
Sbjct: 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597
Score = 46.4 bits (110), Expect = 8e-06
Identities = 11/89 (12%), Positives = 28/89 (31%)
Query: 68 LKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLK 127
++ + + ++ D ++ + L A LF
Sbjct: 260 YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319
Query: 128 KFEDCTHLCDELLKENPTDSTVIDLRTSC 156
+F D + ++L+ +P + V L +
Sbjct: 320 RFIDVLAITTKILEIDPYNLDVYPLHLAS 348
Score = 41.4 bits (97), Expect = 3e-04
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 11/109 (10%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G + + A + + L N F + ++ + Q AL
Sbjct: 448 GMQHMQLGNILLANEYLQSSYAL----FQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 108 L-------KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
L + + LK ++ ++ L + D+ V
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
Score = 39.1 bits (91), Expect = 0.002
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
++ + A T+ + G+ K Y AI +GL + + +A ++ A
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL----STNDANVHTAIALVY 560
Query: 90 FFLKNYRSCLTDCQIALKLKPDYP 113
K +T +L + P+
Sbjct: 561 LHKKIPGLAITHLHESLAISPNEI 584
Score = 37.1 bits (86), Expect = 0.007
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 29 KYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAAS 88
Y N E+ + + + F +++ + + T+ L+I + N +Y AS
Sbjct: 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVYPLHLAS 348
Query: 89 NFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ P+ L + K +
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391
Score = 35.2 bits (81), Expect = 0.025
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 4/110 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A T+ G + NK A +++ + A + A S + ++
Sbjct: 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP--QFGPA--WIGFAHSFAIEGEHDQAIS 428
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150
A +L L L D ++
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
Score = 34.4 bits (79), Expect = 0.051
Identities = 23/185 (12%), Positives = 59/185 (31%), Gaps = 24/185 (12%)
Query: 52 FKCNKYRNAIINYTEGLKIKCADN------------DVNAQLYNNRAASNFFLKNYRSCL 99
K ++ A+ E + + + A + R L N+
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220
Query: 100 TDCQIALKLKPDYPKV--KLRAAQCLFHLKKFEDCTHLC-DELLKENPTDSTVIDLRTSC 156
+ AL + + +L + L ++++ L KE+ + + L
Sbjct: 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA--AFLRSLYMLK 278
Query: 157 INKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGD--LKSFS---DLEP 211
+NK +E ++A+ E+ ++ + L + L + +++P
Sbjct: 279 LNKTS--HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 212 NFPEI 216
++
Sbjct: 337 YNLDV 341
Score = 28.7 bits (64), Expect = 3.3
Identities = 2/66 (3%), Positives = 13/66 (19%), Gaps = 4/66 (6%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
+ + + + + + A + + +
Sbjct: 346 LASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401
Query: 108 LKPDYP 113
+ P +
Sbjct: 402 MDPQFG 407
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 53.4 bits (128), Expect = 5e-09
Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 6/141 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
E + + L Y ++ Y +A + + + +++ + A +
Sbjct: 14 NEISSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAM 68
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152
Y + + P+ AA+CL + + + +L
Sbjct: 69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128
Query: 153 RTSCINKHKEILRNERKQAQQ 173
T ++ E ++ +++ +
Sbjct: 129 STR-VSSMLEAIKLKKEMKHE 148
Score = 26.8 bits (59), Expect = 7.6
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 103 QIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ ++ D + A + +ED + L + DS
Sbjct: 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 55.8 bits (134), Expect = 7e-09
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 6/130 (4%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
+ A+ Y + K+ + N L+ NRA + + ++Y L A L P +P+
Sbjct: 235 KISQQALSAYAQAEKVDRKASS-NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
Query: 115 VKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQV 174
+ R Q L L + + + + S H + R Q+
Sbjct: 294 PQQREQQLLEFLSRLTSLLESKGKTKPKKLQ-----SMLGSLRPAHLGPCGDGRYQSASG 348
Query: 175 KKEEKEKERV 184
+K E + +
Sbjct: 349 QKMTLELKPL 358
Score = 38.5 bits (89), Expect = 0.002
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNY-RSCLTDCQIALKLKPDYP 113
+ + E L V AQ + + +Y A+KL+P+
Sbjct: 82 EEMEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV 137
Query: 114 KVKLRAAQCLFHLKKFED 131
+ + + +
Sbjct: 138 EAWNQLGEVYWKKGDVTS 155
Score = 32.3 bits (73), Expect = 0.20
Identities = 11/115 (9%), Positives = 30/115 (26%), Gaps = 18/115 (15%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
+++ A + ++ +K+ + +N + + S
Sbjct: 108 KGKALNVTPDYS------PEAEVLLSKAVKL----EPELVEAWNQLGEVYWKKGDVTSAH 157
Query: 100 TDCQIALKLKPDYP--------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
T AL + +L+ H + D ++ + D
Sbjct: 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212
Score = 29.2 bits (65), Expect = 2.3
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 20/96 (20%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRA- 86
+K +P EL + G +K +A ++ L N N +
Sbjct: 130 VKLEP------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKNKVSLQNLSM 178
Query: 87 --------ASNFFLKNYRSCLTDCQIALKLKPDYPK 114
+ + ++ + ++A+++ +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 50.4 bits (121), Expect = 3e-07
Identities = 10/69 (14%), Positives = 28/69 (40%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
N + + A +++ +++ C + ++ P + L L K + +L
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80
Query: 138 ELLKENPTD 146
+L+ P++
Sbjct: 81 KLVDLYPSN 89
Score = 43.1 bits (102), Expect = 8e-05
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Query: 25 LQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNN 84
L+++K E T ++ + G+ K KY A+ + + L + NA Y+
Sbjct: 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----IPQNASTYSA 275
Query: 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ + N+ + + AL L+ D C+ +
Sbjct: 276 IGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322
Score = 38.8 bits (91), Expect = 0.002
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 11/108 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
++ E + A+ Y ++ N +
Sbjct: 131 YGHSFAVESEHD-------QAMAAYFTAAQLM--KGCHLP--MLYIGLEYGLTNNSKLAE 179
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
AL + P+ P V F +++ + L++
Sbjct: 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227
Score = 37.7 bits (88), Expect = 0.004
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 13/111 (11%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G N + A +++ L I + + + F +++ AL+
Sbjct: 166 GLEYGLTNNSKLAERFFSQALSI----APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 108 LKPDYPKVKLRA---------AQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
LKK+ + + L P +++
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272
Score = 36.1 bits (84), Expect = 0.013
Identities = 6/52 (11%), Positives = 23/52 (44%)
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
++ + V + A+ ++ F+ C L +++++P ++ + +
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Score = 34.2 bits (79), Expect = 0.053
Identities = 7/84 (8%), Positives = 20/84 (23%), Gaps = 8/84 (9%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
D L+ + ++ ++ + ++ + +A +
Sbjct: 15 VDGLQENLD----VVVSLAERHYYNCDFKMCYKLTSVVMEK----DPFHASCLPVHIGTL 66
Query: 90 FFLKNYRSCLTDCQIALKLKPDYP 113
L + L P P
Sbjct: 67 VELNKANELFYLSHKLVDLYPSNP 90
Score = 28.4 bits (64), Expect = 2.9
Identities = 12/119 (10%), Positives = 30/119 (25%), Gaps = 6/119 (5%)
Query: 33 LENTPEELATTYKDEGN-FNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
++ P ++ G + +K +A ++ ++ + S
Sbjct: 83 VDLYPSN-PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT----YGPAWIAYGHSFAV 137
Query: 92 LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150
+ + A +L L + + L P D V+
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 50.2 bits (121), Expect = 4e-07
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A Y + GN + + + AI +Y L++K + ++ Y N AA+ + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDG--YINLAAALVAAGDMEGAVQ 122
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
AL+ PD V+ L L + E+ + ++ P +
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Score = 49.1 bits (118), Expect = 9e-07
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
+ +P + + +F+C + + T +K N + A+ Y+N
Sbjct: 26 WRQEP------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGN 75
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + + AL+LKPD+ + A L E L+ NP
Sbjct: 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Score = 46.8 bits (112), Expect = 5e-06
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 11/108 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA Y ++G AI Y ++++ Y N A + +
Sbjct: 243 LACVYYEQG-------LIDLAIDTYRRAIELQPH----FPDAYCNLANALKEKGSVAEAE 291
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
AL+L P + A E+ L + L+ P +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Score = 45.6 bits (109), Expect = 1e-05
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
L+Y+P +L D GN + A Y + ++ + + A ++N
Sbjct: 128 LQYNP------DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF---AVAWSNLGC 177
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ + A+ L P++ + L + F+ L +P +
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 148 TV 149
V
Sbjct: 238 VV 239
Score = 45.6 bits (109), Expect = 1e-05
Identities = 8/103 (7%), Positives = 28/103 (27%), Gaps = 4/103 (3%)
Query: 44 YKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQ 103
+ + ++ + A + + + N + ++ +F +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+A+K P + + ++ L+ P
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100
Score = 45.2 bits (108), Expect = 2e-05
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 11/108 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA K++G A Y L++ + A NN A N +
Sbjct: 277 LANALKEKG-------SVAEAEDCYNTALRLC-PTH---ADSLNNLANIKREQGNIEEAV 325
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ AL++ P++ A L K ++ E ++ +PT +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
Score = 42.1 bits (100), Expect = 2e-04
Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L K+ + A+ Y L + ++ A ++ N A + +
Sbjct: 209 LGNVLKEAR-------IFDRAVAAYLRALSLS-PNH---AVVHGNLACVYYEQGLIDLAI 257
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ A++L+P +P A L + + L+ PT +
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Score = 41.0 bits (97), Expect = 4e-04
Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA +++G A+ Y + L++ A ++N A+ + L
Sbjct: 311 LANIKREQG-------NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLK 127
+ A+++ P + L ++
Sbjct: 360 MHYKEAIRISPTFADAYSNMGNTLKEMQ 387
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 46.6 bits (111), Expect = 6e-07
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
A+ Y + + D A+ Y ++ L YR +K P++ +
Sbjct: 5 LEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
++ A L++L ++E L +++ E D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 48.4 bits (116), Expect = 1e-06
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+ ++ G K + AI Y + + +Y + + N+ +
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGNFPLAIQ 129
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ ++ PKV Q ++ K++ ++L+ P
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176
Score = 46.9 bits (112), Expect = 3e-06
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+F FK N Y AI + + + +YN RA + L Y
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQK 58
Query: 101 DCQI---ALKLKPDYPKVKLRAAQCLFHLKKFED 131
D + + + L +
Sbjct: 59 DIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92
Score = 45.3 bits (108), Expect = 1e-05
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
Y G++ + + AI + ++ D + + ++ K Y +
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKV--FYELGQAYYYNKEYVKADS 163
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
L+LKP+ L A+
Sbjct: 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Score = 43.4 bits (103), Expect = 5e-05
Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 7/110 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIIN---YTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
Y ++ KY A + Y + + +
Sbjct: 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA----TKAKSADFEYYGKILMKKGQDSL 92
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ Q A+ + + ++ F ++ ++ TD
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142
Score = 41.9 bits (99), Expect = 1e-04
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 77 VNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+N + A F NY + K + P + R A C + L K++
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDL 55
Score = 39.9 bits (94), Expect = 5e-04
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 8/81 (9%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIK----CADNDVNAQLYNNRAASNFFLKNY 95
A + K A Y + +++ D + A ++
Sbjct: 182 RARANAAQDPDT----KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 96 RSCLTDCQIALKLKPDYPKVK 116
+ L L P K
Sbjct: 238 VKADAAWKNILALDPTNKKAI 258
Score = 26.9 bits (60), Expect = 9.6
Identities = 5/60 (8%), Positives = 14/60 (23%), Gaps = 4/60 (6%)
Query: 27 QLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRA 86
++ +EL + + A + L + + A +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--PTNKKA--IDGLK 262
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 48.7 bits (116), Expect = 2e-06
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 11/107 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA G + GL + + + + +
Sbjct: 29 LADAELGMG-------DTTAGEMAVQRGLALHPGH----PEAVARLGRVRWTQQRHAEAA 77
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
Q A P++P + L L + E + P +
Sbjct: 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Score = 41.4 bits (97), Expect = 3e-04
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
Query: 57 YRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116
++ ++ + D + A + + + + Q L L P +P+
Sbjct: 5 GPRELLQLRAAVRHRPQD----FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
R + + ++ + L + P
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/159 (9%), Positives = 39/159 (24%), Gaps = 14/159 (8%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L + + A A + + + +
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQAS---------DAAPE--HPGIALWLGHALEDAGQAEAAA 111
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRT--SCI 157
A +L P+ P + + L + L ++ ++ S
Sbjct: 112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSED 171
Query: 158 NKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLA 196
E L R +AQ + + ++ + +++
Sbjct: 172 ASAAEQLACARTRAQAIAASVRPLAP-TRVRSKGPLRVG 209
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 44.4 bits (106), Expect = 3e-06
Identities = 7/58 (12%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112
+Y A+ Y + + +++ N ++ +A + +++ + KL+ +
Sbjct: 54 ERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 42.8 bits (102), Expect = 1e-05
Identities = 12/108 (11%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
Y EG + Y +I + + +++ + + + + + L+ Y +
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKY--WLMKGKALYNLERYEEAVD 61
Query: 101 DCQIALKLKPDYPKVK--LRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + D A L +++ E + + K
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 75 NDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
D N + Y + NY + + A++L P+ K L + L++L+++E+
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEE 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 45.6 bits (109), Expect = 7e-06
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
L+ D AT Y GN Y+ A + + L+ + + +
Sbjct: 84 LELDS------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDL--FYMLGT 133
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
L+ + L Q A++L + + + + CL + ++
Sbjct: 134 VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Score = 43.7 bits (104), Expect = 3e-05
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
+ Y A +T+ ++ N +A Y N A + L AL+
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALE 85
Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
L A + +++
Sbjct: 86 LDSSAATAYYGAGNVYVVKEMYKE 109
Score = 43.7 bits (104), Expect = 3e-05
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A Y + N N+ A+ Y + L++ + A Y + Y+
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELD--SSAATA--YYGAGNVYVVKEMYKEAKD 112
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ AL+ + + L L++ +
Sbjct: 113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKL 143
Score = 41.0 bits (97), Expect = 2e-04
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G K + + A+ +++ +ND A L+ +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELN--ENDTEA--RFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
P + A + + E
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREK 211
Score = 40.6 bits (96), Expect = 3e-04
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 11/89 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
+EG A+ + + +A + N + + +N L
Sbjct: 165 FGMCLANEG-------MLDEALSQFAAVTEQD--PGHADA--FYNAGVTYAYKENREKAL 213
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKK 128
A+ ++PD+ H
Sbjct: 214 EMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 37.1 bits (87), Expect = 0.004
Identities = 5/72 (6%), Positives = 20/72 (27%)
Query: 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
+ ++ + + + + + +Y A++ + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 120 AQCLFHLKKFED 131
A L + + E
Sbjct: 64 ANLLSSVNELER 75
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 46.7 bits (110), Expect = 8e-06
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A Y + GN + + A+ YT ++I N A ++N A+ + N +
Sbjct: 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIA 132
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+ ALKLKPD+P A CL + + D +L+
Sbjct: 133 SYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Score = 44.0 bits (103), Expect = 5e-05
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA+ + +G K + A+++Y E ++I + A Y+N + +++ + L
Sbjct: 49 LASVLQQQG-------KLQEALMHYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGAL 97
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
A+++ P + A + LK P
Sbjct: 98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 41.3 bits (96), Expect = 4e-04
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA +++G A+ Y + L++ A ++N A+ + L
Sbjct: 15 LANIKREQG-------NIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ A+++ P + L ++ + ++ NP +
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
+A NN A N + + AL++ P++ A L K ++
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 138 ELLKENPTD 146
E ++ +PT
Sbjct: 68 EAIRISPTF 76
Score = 32.5 bits (73), Expect = 0.22
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA+ +KD GN YR A+ Y N A + ++
Sbjct: 117 LASIHKDSGNIPEAIASYRTAL-----------KLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHL 135
+ + + D + + H +
Sbjct: 166 ERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF 201
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 45.1 bits (107), Expect = 8e-06
Identities = 12/109 (11%), Positives = 34/109 (31%), Gaps = 7/109 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A + +EG ++ A+ ++ + D ++++ N LKN
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFS---AV----QDPHSRICFNIGCMYTILKNMTEAEK 58
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTV 149
++ + + +K++ E L + + +
Sbjct: 59 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Score = 44.7 bits (106), Expect = 1e-05
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 19/116 (16%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDV---------- 77
+ D LA Y G ++ KY AI + E L + +
Sbjct: 64 INRDK------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117
Query: 78 --NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKL-RAAQCLFHLKKFE 130
++ N A + ++ +A +K + K+ +A +C++ K +E
Sbjct: 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYE 173
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 45.5 bits (107), Expect = 1e-05
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
D + T +LAT + + K ++A + E L N +AA
Sbjct: 157 QDQDE-DATLTQLATAW---VSLAAGGEKLQDAYYIFQEMADK----CSPTLLLLNGQAA 208
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL-KKFEDCTHLCDELLKENPTD 146
+ + + Q AL +P+ + HL K E +L + +
Sbjct: 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
Query: 147 STVIDLR 153
+ + R
Sbjct: 269 PFIKEYR 275
Score = 27.4 bits (60), Expect = 6.0
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY-PKVKLRAAQCLFHLKKFED 131
+L++ + A F++ +Y+ C+ + Q P+ + + + +K+
Sbjct: 2 ELFDVKNA--FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGV 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 45.0 bits (107), Expect = 1e-05
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
+ + + L + +D AQL R L D AL ++PD P+V
Sbjct: 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79
Score = 44.2 bits (105), Expect = 2e-05
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
+E A + G A ++++ L I+ + +N N+ +
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEV--FNYLGIYLTQAGNFDA 95
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
L+L P Y L L++ + + +++P D
Sbjct: 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144
Score = 40.4 bits (95), Expect = 5e-04
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 11/91 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L G + A + L++ A + NR + ++ +
Sbjct: 83 LGIYLTQAG-------NFDAAYEAFDSVLELD--PTYNYA--HLNRGIALYYGGRDKLAQ 131
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFE 130
D + P+ P L L + +
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162
Score = 37.7 bits (88), Expect = 0.003
Identities = 8/77 (10%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
+ T+ + + ++ L + S ++A+
Sbjct: 195 TLMERLKADATDNTSL----AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250
Query: 115 VKLRAAQCLFHLKKFED 131
A L L + +D
Sbjct: 251 EHRYALLELSLLGQDQD 267
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 45.1 bits (107), Expect = 2e-05
Identities = 11/118 (9%), Positives = 25/118 (21%), Gaps = 5/118 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TP++ G + + + + + L
Sbjct: 303 HGLTPQQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASHDGGKQAL 357
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150
+ + L A L P+ L+ + + + P I
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415
Score = 44.7 bits (106), Expect = 3e-05
Identities = 15/114 (13%), Positives = 24/114 (21%), Gaps = 5/114 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TPE+ G + + + + V A + L
Sbjct: 371 HGLTPEQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVA--IASHDGGKQAL 425
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + L A L P L+ D L D
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479
Score = 42.4 bits (100), Expect = 1e-04
Identities = 11/114 (9%), Positives = 24/114 (21%), Gaps = 5/114 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TP+ + + + + V A + L
Sbjct: 337 HGLTPQ-QVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PEQVVA--IASNGGGKQAL 391
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + L A L P+ L+ + + + P
Sbjct: 392 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445
Score = 41.3 bits (97), Expect = 3e-04
Identities = 9/99 (9%), Positives = 19/99 (19%), Gaps = 5/99 (5%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TPE+ + + + + + L
Sbjct: 133 HGLTPEQ-VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ----VVAIASNGGGKQAL 187
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ + L A L P L+ +
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 226
Score = 40.1 bits (94), Expect = 8e-04
Identities = 8/106 (7%), Positives = 20/106 (18%), Gaps = 4/106 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
G + + + + + + L+ + L
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGL---TPQ-QVVAIASNSGGKQALETVQRLLP 297
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
A L P L+ + + + P
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343
Score = 39.7 bits (93), Expect = 0.001
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 7/128 (5%)
Query: 21 LVEGLQQLKYDPLENTPEE-LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNA 79
L+ +L+ PL+ + L + + +RNA+ L +
Sbjct: 19 LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPE------QV 72
Query: 80 QLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDEL 139
+ L+ + L A L P L+ + + +
Sbjct: 73 VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132
Query: 140 LKENPTDS 147
P
Sbjct: 133 HGLTPEQV 140
Score = 38.2 bits (89), Expect = 0.003
Identities = 10/99 (10%), Positives = 20/99 (20%), Gaps = 5/99 (5%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TPE+ G + + + + + L
Sbjct: 167 HGLTPEQ-VVAIASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNGGGKQAL 221
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ + L A L P L+ +
Sbjct: 222 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 260
Score = 38.2 bits (89), Expect = 0.003
Identities = 9/110 (8%), Positives = 21/110 (19%), Gaps = 4/110 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
G + + + + + L+ + L
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGL----TPQQVVAIASNGGGKQALETVQRLLP 263
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVI 150
A L P + L+ + + + P I
Sbjct: 264 VLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAI 313
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 27/168 (16%), Positives = 51/168 (30%), Gaps = 28/168 (16%)
Query: 184 VLQIIRERKIKLATSGKGDLKSFSDLEPN------FPEITLRPVHTDDNDRLVWPVLFLY 237
+L + + + D K D+ + I + RL W L
Sbjct: 21 ILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSK 74
Query: 238 PEYRITDFVQEFHEDVTFDSMLEEMFSES--PGWDEDRKYVPGRLSIYYQDPNGKP---Q 292
E + FV+E + ++ + +E P Y+ R +Y +
Sbjct: 75 QEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRM-YIEQRDRLYNDNQVFAKYNVS 132
Query: 293 RVPTTSTLGEVLTN--P-KYVIQAGTPGF--SILVA----DSKEEAQF 331
R+ L + L P K V+ G G + + K + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Score = 41.4 bits (96), Expect = 4e-04
Identities = 50/355 (14%), Positives = 90/355 (25%), Gaps = 123/355 (34%)
Query: 16 EEMSPLVEGLQQLKYDPLENTPEE--------------LAT----TYKDEGNFNFK---- 53
+ L + L +L+ P + +A +YK + +FK
Sbjct: 135 QPYLKLRQALLELR-------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 54 ----CNKYRNAIINYTEGL--KIKCADNDVNAQLYNNRAASN---------FFLKNYRSC 98
CN ++ + L +I + N + + K Y +C
Sbjct: 188 NLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 99 L----------------TDCQI---------ALKLKPDYPK-VKLRAAQCLFHLKK---- 128
L C+I L + L +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 129 FEDCTHL-CDEL----LKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKER 183
+L L NP R S I E +R+ K +K
Sbjct: 307 LLKYLDCRPQDLPREVLTTNP-------RRLSII---AESIRDGLATWDNWKHVNCDK-- 354
Query: 184 VLQIIRERKIKLATSGKGDLKS-FSDLE--P---NFPEITLRPVHTDDNDRLVWPVLFLY 237
L I E + + + + F L P + P I L L+W +
Sbjct: 355 -LTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILL---------SLIWFDV--- 399
Query: 238 PEYRITDFVQEFHEDVTFDSMLEEMFSESPGWDEDRKYVPGRLSIYYQDPNGKPQ 292
+ + V + H+ S++E+ E +P +
Sbjct: 400 IKSDVMVVVNKLHK----YSLVEK------QPKESTISIPSIYLELKVKLENEYA 444
Score = 39.8 bits (92), Expect = 0.001
Identities = 46/292 (15%), Positives = 88/292 (30%), Gaps = 61/292 (20%)
Query: 4 HPFFMSKFPGEGEEMSPLVEGLQQLKYDPLENT---------PEELATTYKDEGNFNFKC 54
+P +S + + + + D L P E + F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--- 382
Query: 55 NKYRNAIINYTEGL------KIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108
+A I L + +D V + + K + + LK+
Sbjct: 383 ---PSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 109 KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNER 168
K + + L H + D ++ ++ + S I H L
Sbjct: 438 KLEN-EYAL-------H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH---L---- 481
Query: 169 KQAQQVKKEEKEKERVLQIIR--ERKIK---LATSGKGDLKS-FSDLEPNFPEITLRPVH 222
K + ++ V R E+KI+ A + G + + L+ P I +
Sbjct: 482 KNIEHPERMT-LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DN 537
Query: 223 TDDNDRLVWPVL-FLYP------EYRITDFVQE--FHEDVTFDSMLEEMFSE 265
+RLV +L FL + TD ++ ED +++ EE +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED---EAIFEEAHKQ 586
Score = 29.8 bits (66), Expect = 1.5
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 34/125 (27%)
Query: 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108
+F F K R+ + A + L LK Y+ + D
Sbjct: 499 DFRFLEQKIRHDSTAW-------NASGSILNTLQQ--------LKFYKPYICD------N 537
Query: 109 KPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNER 168
P Y + + + F +E L + T + LR + + + + I
Sbjct: 538 DPKY-------ERLVNAILDF---LPKIEENLICSK--YTDL-LRIALMAEDEAIFEEAH 584
Query: 169 KQAQQ 173
KQ Q+
Sbjct: 585 KQVQR 589
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 44.2 bits (104), Expect = 4e-05
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 18/177 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA N+ +NAI + +++ + + L +
Sbjct: 178 LAIASYRLDNWP----PSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINK 159
+ AL+ P V AA+ + + L + L+ P ++ +
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL---------- 283
Query: 160 HKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEI 216
H +I R + QV + + + ++L LK + N +
Sbjct: 284 HCQIGCCYRAKVFQVMNLRENGMY----GKRKLLELIGHAVAHLKKADEANDNLFRV 336
Score = 38.4 bits (89), Expect = 0.002
Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 25/187 (13%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL----------- 81
LE P + + F + ++ AI + L+ + ++ Q+
Sbjct: 240 LEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQV 298
Query: 82 ----YNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
N L+ + + A + + +V A ++E+ +
Sbjct: 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358
Query: 138 ELLKENPTDSTVIDLRTSCINKHKEILRNER------KQAQQVKKEEKEKER---VLQII 188
+ + T L N ++ E + ++ ++ +EKE+ LQ I
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418
Query: 189 RERKIKL 195
+ ++
Sbjct: 419 AKMRLSK 425
Score = 34.9 bits (80), Expect = 0.032
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR--AASNFFLKNYRS 97
A Y G + Y + + + E K + +L
Sbjct: 100 YAWVYYHMGRLS-DVQIYVDKVKHVCE--KFSSPYRIESPELDCEEGWTRLKCGGNQNER 156
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKF---EDCTHLCDELLKENPTD 146
+ AL+ KP P+ A + L + ++ + ++ NP +
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 43.7 bits (103), Expect = 4e-05
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 16 EEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADN 75
+ E L+ ++ + T + G + F +Y AI Y E K +
Sbjct: 76 GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS 135
Query: 76 DV--NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126
D A+ + A + + +K + AL + ++P +R Q LF +
Sbjct: 136 DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Score = 35.2 bits (81), Expect = 0.022
Identities = 6/84 (7%), Positives = 23/84 (27%), Gaps = 1/84 (1%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN-AQLYNN 84
L+ +A + + N + + A+ ++ + K+ ++
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266
Query: 85 RAASNFFLKNYRSCLTDCQIALKL 108
+ + + + L
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDH 290
Score = 33.6 bits (77), Expect = 0.082
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 14/109 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRS 97
+A Y D + Y A+ + L++ + A N A S + +
Sbjct: 188 IAGNYDDFKH-------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 98 CLTDCQIALKLK-----PDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141
+ Q A K+ PKV + L + + +E L
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289
Score = 33.2 bits (76), Expect = 0.099
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 3/87 (3%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN---AQLY 82
+ K P + E A + + + ++ + + L I + Q
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185
Query: 83 NNRAASNFFLKNYRSCLTDCQIALKLK 109
A + K+Y L + AL+L
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELA 212
Score = 32.1 bits (73), Expect = 0.26
Identities = 18/114 (15%), Positives = 26/114 (22%), Gaps = 9/114 (7%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
E P+ L K + + A EGL A + + Y +
Sbjct: 254 EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH---KFYKELFLFLQAVY 310
Query: 94 NYRSCLTDCQIAL------KLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLK 141
L L AA FE ++LK
Sbjct: 311 KETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 42.4 bits (101), Expect = 5e-05
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
Y+D+G + K +Y A++ + DV+ + +
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDV--ALHLGIAYVKTGAVDRGTE 63
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ +L PD KV ++K++
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDL 94
Score = 37.4 bits (88), Expect = 0.002
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G K L ++V + ++ Y + +
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADA--PDNVKV--ATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
P V+ R L +L +F++
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDE 128
Score = 36.7 bits (86), Expect = 0.004
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L TY KY A+ + + + N + L + +
Sbjct: 82 LGLTYVQVQ-------KYDLAVPLLIKVAEAN--PINFNV--RFRLGVALDNLGRFDEAI 130
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+IAL L+P+ KV A + + E+
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162
Score = 35.1 bits (82), Expect = 0.013
Identities = 6/59 (10%), Positives = 15/59 (25%)
Query: 73 ADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
++D+ Y ++ S+ Y + + V L +
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Score = 35.1 bits (82), Expect = 0.015
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L + G ++ AI ++ L ++ N+ + A S + + L
Sbjct: 116 LGVALDNLG-------RFDEAIDSFKIALGLR--PNEGKV--HRAIAFSYEQMGRHEEAL 164
Query: 100 TDCQIALKLKPDY 112
+ A +L
Sbjct: 165 PHFKKANELDEGA 177
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 42.4 bits (100), Expect = 7e-05
Identities = 11/120 (9%), Positives = 31/120 (25%), Gaps = 11/120 (9%)
Query: 28 LKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAA 87
L+ P + + ++A+ Y + L++ N
Sbjct: 81 LQKAP------NNVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGN 130
Query: 88 SNFF-LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + + L L + R ++E + +++ P+
Sbjct: 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 11/93 (11%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
ELA YK N Y A + Y E L+ N+V+ A +
Sbjct: 59 ELALAYKKNRN-------YDKAYLFYKELLQKA--PNNVDC--LEACAEMQVCRGQEKDA 107
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
L + L+L+ D + + + E
Sbjct: 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/113 (8%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 47 EGNFNFKCNKYRNAIINYTEGLKIK------------CADNDVNAQLYNNRAASNFFLKN 94
+ + + + A+ + + + + +++++++L A + +N
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN 69
Query: 95 YRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
Y + L+ P+ A+ + +D + +++L+ +
Sbjct: 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122
Score = 27.8 bits (62), Expect = 3.8
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 16/85 (18%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY----------------PKVKLRAAQ 121
+ + ++ ++ + + L D K+ A
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 122 CLFHLKKFEDCTHLCDELLKENPTD 146
+ ++ ELL++ P +
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNN 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 2/115 (1%)
Query: 14 EGEEMSPLVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--K 71
EE L + L ++ T G + +Y +AI + +
Sbjct: 76 RIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIF 135
Query: 72 CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHL 126
D A+ + + S +++K + + A ++ ++ +R QC
Sbjct: 136 VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190
Score = 37.5 bits (87), Expect = 0.005
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN---AQLY 82
+ E A + + + ++ + +I N Q +
Sbjct: 128 KAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187
Query: 83 NNRAASNFFLKNYRSCLTDCQIALKL 108
+ A + LK Y ++ Q A +
Sbjct: 188 SLFATNFLDLKQYEDAISHFQKAYSM 213
Score = 36.3 bits (84), Expect = 0.011
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 3/109 (2%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR 85
+ + N L Y ++K K A +++G+ DV
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308
Query: 86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVK---LRAAQCLFHLKKFED 131
S + + L+ K Y ++ + A+ K F+
Sbjct: 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQK 357
Score = 33.3 bits (76), Expect = 0.11
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYN 83
+ E P+ + T + G ++Y +AI + + + N + Q Y
Sbjct: 209 KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268
Query: 84 NRAASNFFLKNYRSCLTDCQIALKL 108
++ L +
Sbjct: 269 LITQIHYKLGKIDKAHEYHSKGMAY 293
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 39.7 bits (94), Expect = 2e-04
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A + + GN +K Y AI Y + L++ A + N + + +Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEA--WYNLGNAYYKQGDYDEAIE 56
Query: 101 DCQIALKLKPDYPK 114
Q AL+L P +
Sbjct: 57 YYQKALELDPRSAE 70
Score = 36.2 bits (85), Expect = 0.003
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L Y +G Y AI Y + L++ A + N + + +Y +
Sbjct: 41 LGNAYYKQG-------DYDEAIEYYQKALELD--PRSAEA--WYNLGNAYYKQGDYDEAI 89
Query: 100 TDCQIALKLKPDYPK 114
Q AL+L P +
Sbjct: 90 EYYQKALELDPRSAE 104
Score = 32.0 bits (74), Expect = 0.11
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L Y +G Y AI Y + L++ A + N + + +Y +
Sbjct: 75 LGNAYYKQG-------DYDEAIEYYQKALELD--PRSAEA--WYNLGNAYYKQGDYDEAI 123
Query: 100 TDCQIALKLKPD 111
Q AL+L P
Sbjct: 124 EYYQKALELDPR 135
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 40.2 bits (95), Expect = 4e-04
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 12/92 (13%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
Y G + A + + L ++ D ++ + A + L
Sbjct: 124 RGLVYALLG-------ERDKAEASLKQALALE----D-TPEIRSALAELYLSMGRLDEAL 171
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
AL+ P +++R A L K E+
Sbjct: 172 AQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203
Score = 37.9 bits (89), Expect = 0.002
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 33 LENTPEE---LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
++ + L G +Y A+ + LK D A A +
Sbjct: 1 MQTAEQNPLRLGVQLYALG-------RYDAALTLFERALKEN--PQDPEA--LYWLARTQ 49
Query: 90 FFLKNYRSCLTDCQIALKLKPDYP 113
L L + + + P Y
Sbjct: 50 LKLGLVNPALENGKTLVARTPRYL 73
Score = 31.4 bits (72), Expect = 0.31
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
Q + L Y + LT + ALK P P+ A+ L
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Score = 29.8 bits (68), Expect = 0.85
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 22/85 (25%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC- 98
LA T G A+ N + + Y + + L
Sbjct: 45 LARTQLKLG-------LVNPALENGKTLVART--PRYLGG--YMVLSEAYVALYRQAEDR 93
Query: 99 ----------LTDCQIALKLKPDYP 113
L+ + A ++ P Y
Sbjct: 94 ERGKGYLEQALSVLKDAERVNPRYA 118
Score = 29.8 bits (68), Expect = 1.1
Identities = 7/73 (9%), Positives = 16/73 (21%), Gaps = 4/73 (5%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
Y+ + A+ + ++ + R L
Sbjct: 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPL--HLQRGLVYALLGERDKAE 138
Query: 100 TDCQIALKLKPDY 112
+ AL L+
Sbjct: 139 ASLKQALALEDTP 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 38.1 bits (90), Expect = 7e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
P A + + GN +K Y AI Y + L++ N+ A + N + + +Y
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEA--WYNLGNAYYKQGDYD 60
Query: 97 SCLTDCQIALKLKPDYPK 114
+ Q AL+L P+ +
Sbjct: 61 EAIEYYQKALELDPNNAE 78
Score = 36.2 bits (85), Expect = 0.003
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L Y +G Y AI Y + L++ N+ A + N + + +Y +
Sbjct: 49 LGNAYYKQG-------DYDEAIEYYQKALELD--PNNAEA--WYNLGNAYYKQGDYDEAI 97
Query: 100 TDCQIALKLKPDYPK 114
Q AL+L P+ +
Sbjct: 98 EYYQKALELDPNNAE 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 38.3 bits (89), Expect = 0.001
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 21/169 (12%)
Query: 12 PGEGEEMSPLVEGLQQ-LKYDPLENTPE---ELATTYKDEGNFNFKCNKYRNAIINYTEG 67
+ ++ LQ ++ +P E L Y + + Y N+++ Y +
Sbjct: 20 FASQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQND-------YSNSLLAYRQA 70
Query: 68 LKIKCADNDVNAQLYNNRAASNFFLKNYRSC---LTDCQIALKLKPDYPKVKLRAAQCLF 124
L++ NA+LY A ++ + AL L + + A F
Sbjct: 71 LQL----RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126
Query: 125 HLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQ 173
+ L +++ N L S IN K + R +
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVES-INMAKLLQRRSDLEHHH 174
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 39.2 bits (92), Expect = 0.001
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 19/117 (16%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G + K AII + + + ++ A S+ N + L + L
Sbjct: 62 GLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117
Query: 108 LKPDYPKVKLRAAQC---------------LFHLKKFEDCTHLCDELLKENPTDSTV 149
+P Y ++ Q ++ +C L L+ NP D+ +
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Score = 38.8 bits (91), Expect = 0.002
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
L+ + + E F N+YR L++ D AQL+ +
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLY 182
Query: 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
NY S + + A++L+PD ++ + L + + ++
Sbjct: 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224
Score = 37.3 bits (87), Expect = 0.005
Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 4/102 (3%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
Y N P +EG K A + + + A + + +
Sbjct: 10 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEA--WRSLGLTQ 65
Query: 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ + A L P V A +
Sbjct: 66 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107
Score = 35.3 bits (82), Expect = 0.018
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 12/81 (14%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
N Y +A N ++++ +D AQL+N A+ + L AL + P Y
Sbjct: 186 NNYDSAAANLRRAVELR--PDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYV- 240
Query: 115 VKLRA----AQCLFHLKKFED 131
R A ++ +++
Sbjct: 241 ---RVMYNMAVSYSNMSQYDL 258
Score = 34.2 bits (79), Expect = 0.055
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113
N+ + A+ Y L I V N A S + Y A+ ++
Sbjct: 220 NRPQEALDAYNRALDIN--PGYVRV--MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 38.8 bits (91), Expect = 0.002
Identities = 13/72 (18%), Positives = 24/72 (33%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
E EG K R + + +++ D + +Y+ + F+L +Y
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 98 CLTDCQIALKLK 109
L L L
Sbjct: 66 ALEYHHHDLTLA 77
Score = 33.8 bits (78), Expect = 0.076
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNY 95
+ L+ Y GN F + Y A+ + L + D A+ N + L N+
Sbjct: 44 KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF 103
Query: 96 RSCLTDCQIALKLK 109
+ CQ L +
Sbjct: 104 DEAIVCCQRHLDIS 117
Score = 30.3 bits (69), Expect = 0.86
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRS 97
L T+ GN +R+A+I + + L I + D + Y+N + FL + +
Sbjct: 193 LGNTHYLLGN-------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245
Query: 98 CLTDCQIALKLK 109
+ L L
Sbjct: 246 ASEYYKKTLLLA 257
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNF 90
L++ E A + GN Y AI + + L I ND + + +
Sbjct: 260 LKDRAVE-AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318
Query: 91 FLKNYRSCLTDCQIALKLK 109
L N+ + + L++
Sbjct: 319 ALGNHDQAMHFAEKHLEIS 337
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKN 94
+ + A+ Y E L + D + + N +++ L N
Sbjct: 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN 202
Query: 95 YRSCLTDCQIALKLKPDY 112
+R + + L + ++
Sbjct: 203 FRDAVIAHEQRLLIAKEF 220
Score = 27.3 bits (61), Expect = 8.6
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRSC 98
Y + GN ++ A Y + L + D AQ + + L++Y
Sbjct: 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286
Query: 99 LTDCQIALKLK 109
+ L +
Sbjct: 287 IDYHLKHLAIA 297
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 19/112 (16%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G + + AI L++ N A S R + L+
Sbjct: 105 GTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLR 160
Query: 108 LKPDYPKV---------------KLRAAQCLFHLKKFEDCTHLCDELLKENP 144
P Y + R L F + L ++ +P
Sbjct: 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212
Score = 36.9 bits (86), Expect = 0.007
Identities = 8/92 (8%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L + + G+ + + + +++ ++ + Y +
Sbjct: 181 LGPSKRILGSL-LSDSLFLEVKELFLAAVRLD--PTSIDPDVQCGLGVLFNLSGEYDKAV 237
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
AL ++P+ + + L + + E+
Sbjct: 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269
Score = 35.0 bits (81), Expect = 0.027
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
E P +EG + NA++ + ++ + A + + +
Sbjct: 57 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEA--WQYLGTTQAENE 112
Query: 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
++ + L+LKPD + A + + + L+ P
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163
Score = 34.2 bits (79), Expect = 0.045
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 23 EGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRN-AIINYTEGLKIKCADNDVNAQL 81
+ + D + EL K + + + Y + Y +G + + + +
Sbjct: 7 KSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQ 66
Query: 82 YNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113
+ + + + A++ P +
Sbjct: 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98
Score = 32.3 bits (74), Expect = 0.18
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
N+ A+ Y L+++ + + N S L +R + AL ++
Sbjct: 265 NQSEEAVAAYRRALELQP--GYIRS--RYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320
Query: 115 VKLRAAQCLFHL 126
+ ++
Sbjct: 321 PRGEGGAMSENI 332
Score = 28.8 bits (65), Expect = 2.4
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 4/77 (5%)
Query: 40 LATTYKDEGNFNFKCNKYRNAII---NYTEGLKIK-CADNDVNAQLYNNRAASNFFLKNY 95
LA ++ +E C R+ + Y + S +
Sbjct: 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197
Query: 96 RSCLTDCQIALKLKPDY 112
A++L P
Sbjct: 198 LEVKELFLAAVRLDPTS 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/85 (12%), Positives = 18/85 (21%), Gaps = 4/85 (4%)
Query: 60 AIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA 119
L DN L + + + + L + AL P Y
Sbjct: 4 ITERLEAMLAQG-TDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59
Query: 120 AQCLFHLKKFEDCTHLCDELLKENP 144
+ L + L
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQ 84
Score = 27.3 bits (61), Expect = 2.9
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
L D ++ + ++F+ L +PT S
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 38.0 bits (89), Expect = 0.003
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 11/77 (14%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+L Y G A + + L+I + +A + A +
Sbjct: 42 QLGLGYLQRG-------NTEQAKVPLRKALEID--PSSADA--HAALAVVFQTEMEPKLA 90
Query: 99 LTDCQIALKLKPDYPKV 115
+ + AL +V
Sbjct: 91 DEEYRKALASDSRNARV 107
Score = 36.1 bits (84), Expect = 0.010
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA ++ E + + A Y + L + NN + K Y
Sbjct: 77 LAVVFQTEM-------EPKLADEEYRKALASD--SRNARV--LNNYGGFLYEQKRYEEAY 125
Query: 100 TDCQIALK--LKPDYPKVKLRAAQCLFHLKKFED 131
A + L P+ +V +KK
Sbjct: 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159
Score = 35.7 bits (83), Expect = 0.013
Identities = 9/105 (8%), Positives = 25/105 (23%), Gaps = 11/105 (10%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
L K A + + L++ + + A + + Y
Sbjct: 147 LGLVSLQMK-------KPAQAKEYFEKSLRLN-RNQ---PSVALEMADLLYKEREYVPAR 195
Query: 100 TDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+ + + L + + + +L + P
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240
Score = 33.0 bits (76), Expect = 0.088
Identities = 8/55 (14%), Positives = 12/55 (21%), Gaps = 4/55 (7%)
Query: 59 NAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113
N + K D Y N + AL++ P
Sbjct: 21 MGDQNPLKTDKG----RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA 71
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 35.5 bits (83), Expect = 0.003
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
P A + + GN +K Y AI Y + L++ N+ A + N + + +Y
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEA--WYNLGNAYYKQGDYD 60
Query: 97 SCLTDCQIALKLKPDYP 113
+ Q AL+L P+
Sbjct: 61 EAIEYYQKALELDPNNA 77
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+ ++G NA+ E L+ + D + Y + L +++
Sbjct: 5 KTIKELINQG-------DIENALQALEEFLQTEPVGKD---EAYYLMGNAYRKLGDWQKA 54
Query: 99 LTDCQIALKLKPDYPKVK 116
L + Q A++L PD P ++
Sbjct: 55 LNNYQSAIELNPDSPALQ 72
Score = 30.4 bits (69), Expect = 0.21
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
L+ P Y GN K ++ A+ NY +++ + A+ NF+
Sbjct: 27 LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDIL-NFYN 85
Query: 93 KNY 95
K+
Sbjct: 86 KDM 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 38.1 bits (89), Expect = 0.003
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 4/84 (4%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G + + AI+ L++ N + A S + + + +K
Sbjct: 106 GITQAENENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161
Query: 108 LKPDYPKVKLRAAQCLFHLKKFED 131
P Y + ++
Sbjct: 162 QNPKYKYLVKNKKGSPGLTRRMSK 185
Score = 36.6 bits (85), Expect = 0.008
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCL 99
LA +Y + ++A +K N L N+ S +
Sbjct: 139 LAVSYTNTS-------HQQDACEALKNWIKQ----NPKYKYLVKNKKGSPGLTRRMSKSP 187
Query: 100 TDCQIALKLKPDYPK 114
D + +K Y +
Sbjct: 188 VDSSVLEGVKELYLE 202
Score = 36.6 bits (85), Expect = 0.009
Identities = 18/160 (11%), Positives = 44/160 (27%), Gaps = 6/160 (3%)
Query: 33 LENTPEEL-ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
+ + G ++ AI + L ++ D L+N A+
Sbjct: 204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PED--YSLWNRLGATLAN 259
Query: 92 LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
+ AL+++P + + + +L + + L
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 152 LRTSCINKHKE-ILRNERKQAQQVKKEEKEKERVLQIIRE 190
+ I+ + LR Q + + L ++
Sbjct: 320 VPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLR 359
Score = 35.4 bits (82), Expect = 0.022
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 30 YDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASN 89
Y P + +EG K I+ + D A + +
Sbjct: 54 YYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEA--WQFLGITQ 109
Query: 90 FFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+N ++ + Q L+L+P+ K + A + +D +K+NP
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164
Score = 32.7 bits (75), Expect = 0.14
Identities = 4/94 (4%), Positives = 19/94 (20%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRS 97
E + + + + + +G + + +
Sbjct: 24 AEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPV 83
Query: 98 CLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ + A+ P + + +
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQA 117
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 38.1 bits (88), Expect = 0.003
Identities = 11/115 (9%), Positives = 24/115 (20%), Gaps = 4/115 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
+ + + + + + V A + L+ +
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLT--PDQVVA--IASHGGGKQALETVQRL 313
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
L A L PD L+ + + + P I
Sbjct: 314 LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 368
Score = 38.1 bits (88), Expect = 0.004
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 5/125 (4%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR 85
L PL TP + + + + + A +
Sbjct: 178 NALTGAPLNLTPAQ-VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ----VVAIASH 232
Query: 86 AASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPT 145
L+ + L A L PD L+ + + + P
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 146 DSTVI 150
I
Sbjct: 293 QVVAI 297
Score = 34.6 bits (79), Expect = 0.043
Identities = 10/114 (8%), Positives = 23/114 (20%), Gaps = 5/114 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TP++ G + + + + D + L
Sbjct: 524 HGLTPDQ-VVAIASNGGGKQALETVQRLLPVLCQAHGLT-PDQV---VAIASNGGGKQAL 578
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ + L A L L+ + + + P
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
Score = 33.9 bits (77), Expect = 0.074
Identities = 11/121 (9%), Positives = 22/121 (18%), Gaps = 5/121 (4%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TP + + + + + + L
Sbjct: 456 HGLTPAQ-VVAIASHDGGKQALETVQQLLPVLCQAHGL----TPDQVVAIASNIGGKQAL 510
Query: 93 KNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDL 152
+ L A L PD L+ + + + P I
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570
Query: 153 R 153
Sbjct: 571 N 571
Score = 30.8 bits (69), Expect = 0.86
Identities = 6/73 (8%), Positives = 13/73 (17%), Gaps = 4/73 (5%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
+ + + + + L+ + L
Sbjct: 328 VVAIASHDGGKQALETVQRLLPVLCQAHGL----TPDQVVAIASNGGGKQALETVQRLLP 383
Query: 101 DCQIALKLKPDYP 113
A L PD
Sbjct: 384 VLCQAHGLTPDQV 396
Score = 30.0 bits (67), Expect = 1.3
Identities = 6/81 (7%), Positives = 15/81 (18%), Gaps = 5/81 (6%)
Query: 33 LENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFL 92
TP + + + + + + L
Sbjct: 626 HGLTPAQ-VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ----VVAIASNGGGKQAL 680
Query: 93 KNYRSCLTDCQIALKLKPDYP 113
+ + L A L +
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQV 701
Score = 30.0 bits (67), Expect = 1.5
Identities = 8/91 (8%), Positives = 19/91 (20%), Gaps = 4/91 (4%)
Query: 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
+ + + + V + L+ + L A L P
Sbjct: 580 TVQRLLPVLCQAHGL----TQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Query: 116 KLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
L+ + + + P
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 36.1 bits (84), Expect = 0.009
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 37 PEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYR 96
+++ + YR A + + LK + A + RA +LK
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELA--WLVRAEIYQYLKVND 59
Query: 97 SCLTDCQIALKLKPDYPKV 115
+ AL +KPD ++
Sbjct: 60 KAQESFRQALSIKPDSAEI 78
Score = 32.6 bits (75), Expect = 0.11
Identities = 9/95 (9%), Positives = 26/95 (27%), Gaps = 2/95 (2%)
Query: 53 KCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDY 112
+ N+ ++ + + L A N+ + + + +L +P +
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 113 PKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
P A+ + D + +
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 36.1 bits (84), Expect = 0.012
Identities = 10/84 (11%), Positives = 25/84 (29%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNR 85
+ + + EG R + + ++ D + +Y+
Sbjct: 33 GNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQL 92
Query: 86 AASNFFLKNYRSCLTDCQIALKLK 109
+ F+L +Y + + L L
Sbjct: 93 GNAYFYLGDYNKAMQYHKHDLTLA 116
Score = 31.5 bits (72), Expect = 0.43
Identities = 10/77 (12%), Positives = 19/77 (24%), Gaps = 9/77 (11%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRS 97
L T K G ++ A I L + + D + N +
Sbjct: 132 LGNTLKVMG-------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG 184
Query: 98 CLTDCQIALKLKPDYPK 114
+ +K +
Sbjct: 185 QRNPGKFGDDVKEALTR 201
Score = 29.2 bits (66), Expect = 2.1
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRS 97
L TY G+ ++ AI ++ E L+I + D + +N S+ FL +
Sbjct: 229 LGNTYYLLGD-------FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281
Query: 98 CLTDCQIALKLK 109
+ L L
Sbjct: 282 AAEHYKRTLALA 293
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRS 97
L TY ++ AI + L I D A+ + ++ + +
Sbjct: 309 LGNTYTLLH-------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361
Query: 98 CLTDCQIALKL 108
L + L+L
Sbjct: 362 ALKYAEQHLQL 372
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 35.7 bits (83), Expect = 0.015
Identities = 12/69 (17%), Positives = 23/69 (33%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
EG K R + + +++ D + +Y+ + F+L +Y L
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Query: 101 DCQIALKLK 109
L L
Sbjct: 65 YHHHDLTLA 73
Score = 32.6 bits (75), Expect = 0.16
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFF 91
E+ + Y GN F + Y A+ + L + D A+ N +
Sbjct: 37 EDLKTL-SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95
Query: 92 LKNYRSCLTDCQIALKLK 109
L N+ + CQ L +
Sbjct: 96 LGNFDEAIVCCQRHLDIS 113
Score = 30.3 bits (69), Expect = 0.89
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVN--AQLYNNRAASNFFLKNYRS 97
L TY + Y AI + + L I D + + + L N+
Sbjct: 269 LGNTYTLLQD-------YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321
Query: 98 CLTDCQIALKLK 109
+ + L++
Sbjct: 322 AMHFAEKHLEIS 333
Score = 28.8 bits (65), Expect = 2.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRS 97
L T+ GN +R+A+I + + L I + D + Y+N + FL + +
Sbjct: 189 LGNTHYLLGN-------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241
Query: 98 CLTDCQIALKLK 109
+ L L
Sbjct: 242 ASEYYKKTLLLA 253
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 34.0 bits (78), Expect = 0.018
Identities = 13/111 (11%), Positives = 24/111 (21%), Gaps = 4/111 (3%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
N P +EG K A + + + + + + + +
Sbjct: 10 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENE 65
Query: 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+ A L P V A + L P
Sbjct: 66 KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116
Score = 31.7 bits (72), Expect = 0.10
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
G + K AII + + + ++ A S+ N + L + L
Sbjct: 58 GLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Query: 108 LKPDYP 113
+P Y
Sbjct: 114 SQPQYE 119
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 33.0 bits (76), Expect = 0.024
Identities = 8/54 (14%), Positives = 16/54 (29%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFED 131
+ A + N L + ++ PDY + L + +D
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDD 59
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 31.6 bits (72), Expect = 0.35
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 263 FSESPGWDEDRKYVPGRLSIYYQD-PNGKPQRVPTTSTLGEVLTNPKYVIQAGTP----- 316
+E P +D++ + + P G+ R+ + V+ P+ G P
Sbjct: 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQC 78
Query: 317 ---GFSILVADSK 326
+ VAD +
Sbjct: 79 DRDANQLFVADMR 91
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 29.7 bits (66), Expect = 1.1
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 26 QQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI---KCADNDVNAQLY 82
+ L + N + + I + + LK + + + ++
Sbjct: 140 KLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199
Query: 83 NNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRA------AQCLFHLKKFED 131
N A + + Y L A+++ + L +CL L+ E
Sbjct: 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 29.0 bits (66), Expect = 1.1
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 40 LATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNYRS 97
L T+ GN +R+A+I + + L I + D Y+N + FL + +
Sbjct: 15 LGNTHYLLGN-------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67
Query: 98 CLTDCQIALKLK 109
+ L L
Sbjct: 68 ASEYYKKTLLLA 79
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 28.4 bits (64), Expect = 2.5
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 12/54 (22%)
Query: 296 TTSTLGEVLTNPKYVIQAGTPGFS-----------ILVADSKEEA-QFIKDCLS 337
T + + L K V+ GT + + VA A +K L+
Sbjct: 120 TAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLA 173
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 28.5 bits (64), Expect = 2.9
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 148 TVIDLRT---SCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKG 201
TVID++ + K K L E Q +Q KK+ E+ ++L+ +I+ G
Sbjct: 98 TVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 154
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 3.3
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 162 EILR--NERKQAQQVKKEEKEKERVLQIIRERKIK 194
E +R E ++ + + + K Q RE+ K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVM-EQEWREKAKK 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 28.0 bits (63), Expect = 3.8
Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVNAQLYNNRAASNFFLKNY 95
A ++ G+ + A ++ I + D++ +L ++
Sbjct: 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 26.5 bits (58), Expect = 4.9
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 120 AQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEK 179
+ ++ + L +LL+ +P H+ N + + KE+
Sbjct: 53 SYAVYQQGDLDKALLLTKKLLELDPE--------------HQRANGNLKYFEYIMAKEKD 98
Query: 180 EKE 182
+
Sbjct: 99 VNK 101
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 27.8 bits (61), Expect = 5.2
Identities = 10/54 (18%), Positives = 22/54 (40%)
Query: 273 RKYVPGRLSIYYQDPNGKPQRVPTTSTLGEVLTNPKYVIQAGTPGFSILVADSK 326
++ +I + + ++ + GE+ + YV T GF I+ D +
Sbjct: 16 ITFIQKSAAIKAGARSAEDIKLDKVNLGGELSGSNMYVYNISTGGFVIVSGDKR 69
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 28.2 bits (62), Expect = 5.3
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 130 EDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIR 189
EDC L LLK N ++ S I + K + + ++ +LQ++R
Sbjct: 230 EDCLILLQNLLKNNNSNQNFF-KEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVR 288
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 27.7 bits (61), Expect = 5.6
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
+ + + V L ++ E L + ++ N + TV R + ++
Sbjct: 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Query: 164 LRNERK 169
L E
Sbjct: 148 LHEEMN 153
>1zsw_A Metallo protein, glyoxalase family protein; hypothetical protein
from glyoxalase family, structural GENO PSI, protein
structure initiative; 1.65A {Bacillus cereus} SCOP:
d.32.1.10 d.32.1.10
Length = 338
Score = 27.7 bits (61), Expect = 5.7
Identities = 7/66 (10%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 278 GRLSIYYQDPNGKP----QRVPTTSTLGEVLTNPKYVIQAGTPGF---SILVADSKEEAQ 330
R ++ ++D G E + + G + V + A
Sbjct: 137 NRPALQFEDAEGLRLVLLVSNGEKVEHWETWEKSEVPAKHQIQGMGSVELTVRRLDKMAS 196
Query: 331 FIKDCL 336
+ +
Sbjct: 197 TLTEIF 202
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 27.2 bits (60), Expect = 6.4
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
VKL A CL K+FE L + E
Sbjct: 32 LSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 27.4 bits (61), Expect = 6.5
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 134 HLCDELLKENPTDSTVIDLRTSCINKHKEILRNER 168
HL +L+ + +D++T ++ +++++ER
Sbjct: 39 HLSKRILETTDWEVFGMDMQT---DRLGDLVKHER 70
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis,
mutation, deletion, streisinger, slippage, transferase,
lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP:
a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A*
2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A*
1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A*
1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Length = 335
Score = 27.5 bits (60), Expect = 6.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAI 61
E LA Y +G+ ++ Y AI
Sbjct: 21 EVLAKAYSVQGD-KWRALGYAKAI 43
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA
complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP:
a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A*
1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A*
1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A*
1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Length = 335
Score = 27.6 bits (60), Expect = 7.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAI 61
ELA K+ K N YR A
Sbjct: 20 TELANFEKNVSQAIHKYNAYRKAA 43
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 27.1 bits (61), Expect = 10.0
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 67 GLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYP 113
G I A D+ N + F R+ + D ++A +L P
Sbjct: 285 GPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGY 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.403
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,218,983
Number of extensions: 316222
Number of successful extensions: 1335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 257
Length of query: 337
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 243
Effective length of database: 4,077,219
Effective search space: 990764217
Effective search space used: 990764217
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)