RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5660
(337 letters)
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 53.8 bits (128), Expect = 2e-09
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKC-----------ADNDVNAQLYNNRAA 87
E A K++G FK KY A+I Y + + A + N A
Sbjct: 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
L+ Y + C AL L K R + + +FE +++L+ NP +
Sbjct: 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132
Query: 148 TVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKE 182
C K KE +R+ + K+ E++
Sbjct: 133 AARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQD 167
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 52.7 bits (125), Expect = 8e-09
Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 7/179 (3%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K++GN F KY A Y + N + A Y NRA ++ L
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALA 59
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC---I 157
DC+ AL+L K QC ++ +++ I
Sbjct: 60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Query: 158 NKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPEI 216
K K E ++ Q + R++ RER+++ + + I
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI 178
Score = 28.0 bits (61), Expect = 1.4
Identities = 11/69 (15%), Positives = 20/69 (28%)
Query: 78 NAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCD 137
+AQ + F + Y A+ P A C +++ E C
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 138 ELLKENPTD 146
L+ +
Sbjct: 63 RALELDGQS 71
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 48.9 bits (115), Expect = 9e-08
Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 16/159 (10%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD-----------NDVNAQLYNNRAA 87
E +T K+ G FK KY+ A++ Y + + + + + N A
Sbjct: 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70
Query: 88 SNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ L+ + + + C AL+L + K R + + FE ++L+ P +
Sbjct: 71 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130
Query: 148 TVIDLRTSCINKHKEILRNERKQAQQV-----KKEEKEK 181
C + + L E+K + ++E K K
Sbjct: 131 AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAK 169
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 46.9 bits (110), Expect = 4e-07
Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 12/136 (8%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLK------------IKCADNDVNAQLYNNRA 86
+ A K+EGN FK N+ AI+ Y E L + ++ N A
Sbjct: 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74
Query: 87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
K+Y + LK+ + K + + E+ + NP +
Sbjct: 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134
Query: 147 STVIDLRTSCINKHKE 162
+ + C+NK KE
Sbjct: 135 LDIRNSYELCVNKLKE 150
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 46.2 bits (108), Expect = 7e-07
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 12/143 (8%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCAD------------NDVNAQLYNNRA 86
++ K+ GN FK + AI YT+ L+ V N
Sbjct: 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84
Query: 87 ASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
A + +++ + C AL++ P K R AQ LK+++ + + P D
Sbjct: 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144
Query: 147 STVIDLRTSCINKHKEILRNERK 169
+ K K E+
Sbjct: 145 KAIQAELLKVKQKIKAQKDKEKA 167
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 47.4 bits (111), Expect = 1e-06
Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
Y + GN + + A+ Y L + +A ++ N A +
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP----NHAVVHGNLACVYYEQGLIDLA 256
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCIN 158
+ + A++L+P +P A L + + L+ PT + ++ +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316
Query: 159 KHKEI 163
+ I
Sbjct: 317 EQGNI 321
Score = 47.0 bits (110), Expect = 1e-06
Identities = 6/91 (6%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 46 DEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIA 105
+ + ++ + A + + + N + ++ +F + +A
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Query: 106 LKLKPDYPKVKLRAAQCLFHLKKFEDCTHLC 136
+K P + + ++
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90
Score = 45.0 bits (105), Expect = 6e-06
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALK 107
N + A+ Y + L++ A ++N A+ + L + A++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 108 LKPDYPKVKLRAAQCLFHLK 127
+ P + L ++
Sbjct: 368 ISPTFADAYSNMGNTLKEMQ 387
Score = 42.0 bits (97), Expect = 6e-05
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
Y + N + A Y L++ D NN A N
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS----LNNLANIKREQGNIEEA 324
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
+ + AL++ P++ A L K ++ E ++ +PT +
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
Score = 40.0 bits (92), Expect = 2e-04
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 84 NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
A + ++ + C + +PD V L + F ++ + H +K+N
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 144 PTDS 147
P +
Sbjct: 64 PLLA 67
Score = 26.2 bits (56), Expect = 6.4
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 117 LRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSC 156
+ A + FE C +L ++ P ++ V+ L +S
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI 42
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 45.0 bits (105), Expect = 2e-06
Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 4/146 (2%)
Query: 32 PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFF 91
P + + A K + N FK Y NAI Y+ N NA Y NR+ +
Sbjct: 1 PPADGALKRAEELKTQANDYFKAKDYENAIKFYS----QAIELNPSNAIYYGNRSLAYLR 56
Query: 92 LKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVID 151
+ Y L D A++L Y K R A L KF + ++K P D
Sbjct: 57 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116
Query: 152 LRTSCINKHKEILRNERKQAQQVKKE 177
C K+ + K+
Sbjct: 117 KYQECNKIVKQKAFERAIAGDEHKRS 142
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 45.2 bits (106), Expect = 2e-06
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A + +EG ++ A+ ++ D ++++ N LKN
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSA-------VQDPHSRICFNIGCMYTILKNMTEAEK 57
Query: 101 DCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
++ + + +K++ E L +
Sbjct: 58 AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 101
Score = 27.5 bits (60), Expect = 1.9
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVN------------AQLYNNRAASNFFLKNYR 96
++ KY AI + E L + ++ ++ N A + ++
Sbjct: 78 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137
Query: 97 SCLTDCQIALKLKPDYPKVKLRAA 120
+A +K + K+ A
Sbjct: 138 KAEEQLALATSMKSEPRHSKIDKA 161
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 42.5 bits (99), Expect = 7e-06
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 41 ATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLT 100
A K+ GN +K + A+ +Y + ++ + N N+AA F +Y C
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL----DPTNMTYITNQAAVYFEKGDYNKCRE 59
Query: 101 DCQIALKLKPDYP-------KVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
C+ A+++ + K R F +K++D H ++ L E+ T + +
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 40.6 bits (93), Expect = 1e-04
Identities = 16/81 (19%), Positives = 25/81 (30%)
Query: 56 KYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKV 115
+ + + L + +D AQL R L D AL ++PD P+V
Sbjct: 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73
Query: 116 KLRAAQCLFHLKKFEDCTHLC 136
L F+
Sbjct: 74 FNYLGIYLTQAGNFDAAYEAF 94
Score = 27.1 bits (58), Expect = 3.4
Identities = 4/64 (6%), Positives = 14/64 (21%)
Query: 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108
F + + + + ++ L + S ++A+
Sbjct: 179 EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238
Query: 109 KPDY 112
Sbjct: 239 NVHN 242
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 40.2 bits (92), Expect = 2e-04
Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 4/153 (2%)
Query: 34 ENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLK 93
E P +EG + NA++ + ++ + + + + + +
Sbjct: 12 EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENE 67
Query: 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLR 153
++ + L+LKPD + A + + + L+ P + ++
Sbjct: 68 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 127
Query: 154 TSCINKHKEILRNERKQAQQVKKEEKEKERVLQ 186
+ E + +
Sbjct: 128 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 160
Score = 32.5 bits (72), Expect = 0.064
Identities = 5/79 (6%), Positives = 21/79 (26%)
Query: 63 NYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQC 122
Y +G + + + + + + + + A++ P + +
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 123 LFHLKKFEDCTHLCDELLK 141
++ L+
Sbjct: 63 QAENEQELLAISALRRCLE 81
Score = 29.4 bits (64), Expect = 0.65
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108
N+ A+ Y L+++ + N S L +R + AL +
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPG----YIRSRYNLGISCINLGAHREAVEHFLEALNM 269
Query: 109 KPDYPKVKLRAAQCLFHL 126
+ + ++
Sbjct: 270 QRKSRGPRGEGGAMSENI 287
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 36.6 bits (83), Expect = 0.001
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 27/172 (15%)
Query: 32 PLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--------CADNDVNAQLYN 83
PL+ A + +Y A N ++I +A +
Sbjct: 2 PLKEVVG--AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA 59
Query: 84 NRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
A + L+++ L AL ++ +
Sbjct: 60 GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL--------- 110
Query: 144 PTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKIKL 195
K E+ ++ K E KER++++ +R +L
Sbjct: 111 -DGLGRGAEAMPEFKKVVEM-------IEERKGETPGKERMMEVAIDRIAQL 154
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 36.3 bits (83), Expect = 0.005
Identities = 7/106 (6%), Positives = 18/106 (16%), Gaps = 6/106 (5%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
G + K + + C + +
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH------CLVHLGDIARYRNQTSQA 171
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+ + A +L P + + A +
Sbjct: 172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Score = 33.2 bits (75), Expect = 0.038
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 5/113 (4%)
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEIL 164
A LK D KL A+ + +D ++L + + + N +
Sbjct: 12 AEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQ 68
Query: 165 RNERKQAQQVKK--EEKEKERVLQIIRERKIKLATSGKGDLKSFSDLEPNFPE 215
+ + + E + L + E T +L + +++
Sbjct: 69 ITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121
Score = 33.2 bits (75), Expect = 0.040
Identities = 12/109 (11%), Positives = 19/109 (17%), Gaps = 3/109 (2%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSC 98
E A K E + ++N I K + N Q N Y
Sbjct: 49 EYALDKKVEQDLWNHA--FKNQITTLQGQAKNRANPNRSEVQA-NLSLFLEAASGFYTQL 105
Query: 99 LTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDS 147
L + + +
Sbjct: 106 LQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHC 154
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 32.9 bits (74), Expect = 0.011
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 48 GNFNFKCNKYRNAIINYTEGLKIKCADNDVNAQL---YNNRAASNFFLKNYRSCLTDCQI 104
G + Y + + + L+ + + + + + L +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 105 ALKLKPDYPKVKLRAAQCLFHLKK 128
L+L P++ + + + K
Sbjct: 72 LLELDPEHQRANGNLKYFEYIMAK 95
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 31.9 bits (72), Expect = 0.081
Identities = 9/53 (16%), Positives = 16/53 (30%)
Query: 94 NYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTD 146
+ L A+K P ++ + L FE + +K P
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63
Score = 30.8 bits (69), Expect = 0.21
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 55 NKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPK 114
+ + A+ E +K + +A L ++ ++ ++KL P+Y
Sbjct: 10 GQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 115 VKLRAAQCLFHLKKFEDC 132
+ + + +D
Sbjct: 66 GASQLRHLVKAAQARKDF 83
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 29.1 bits (63), Expect = 0.73
Identities = 13/105 (12%), Positives = 28/105 (26%), Gaps = 5/105 (4%)
Query: 74 DNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAA-----QCLFHLKK 128
++ ++A+ RA N ++AL+ P A + L +
Sbjct: 7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE 66
Query: 129 FEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQ 173
L + + S I + + + Q
Sbjct: 67 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 111
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 27.8 bits (61), Expect = 1.00
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 49 NFNFKCNKYRNAIINYTEGLKIKCADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKL 108
+ R I+ E + + A N+ LK Y L + L+
Sbjct: 44 VRTRYNDDIRKGIVLLEE--LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
Query: 109 KPDYPKVK 116
+P + K
Sbjct: 102 EPQNNQAK 109
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 28.4 bits (62), Expect = 1.3
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 104 IALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENPTDSTVIDLRTSCINKHKEI 163
+ + + V L ++ E L + ++ N + TV R + ++
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 93
Query: 164 LRNE 167
L E
Sbjct: 94 LHEE 97
Score = 28.4 bits (62), Expect = 1.3
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Query: 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKK-FEDCTHLCD 137
+Y+ A + + A++L V L L+K + +
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 102
Query: 138 ELLKENPTDSTVIDLRTSCINKH 160
+++E P + V R +
Sbjct: 103 AIIEEQPKNYQVWHHRRVLVEWL 125
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 26.9 bits (58), Expect = 1.8
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 30/108 (27%)
Query: 39 ELATTYKDEGNFNFKCNKYRNAIINYTEGLKIK--------------------------- 71
E K++GN +A+ Y+E +K+
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60
Query: 72 ---CADNDVNAQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVK 116
+ Y+ +AA+ FL + + LK + + P++K
Sbjct: 61 CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 108
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.9 bits (57), Expect = 2.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 38 EELATTYKDEGNFNFKCNKYRNAI 61
ELA K+ K N YR A
Sbjct: 11 TELANFEKNVSQAIHKYNAYRKAA 34
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 27.2 bits (59), Expect = 2.8
Identities = 9/107 (8%), Positives = 22/107 (20%), Gaps = 6/107 (5%)
Query: 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKL------KPDYPKVKLRAAQCLFHLKKFEDC 132
A L A K A + + + A +C +
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 133 THLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEK 179
+ ++ + + + A+ + E
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143
Score = 26.5 bits (57), Expect = 4.5
Identities = 14/142 (9%), Positives = 32/142 (22%), Gaps = 12/142 (8%)
Query: 21 LVEGLQQLKYDPLENTPEELATTYKDEGNFNFKCNKYRNAIINYTEGLKI--KCADNDVN 78
L G K++ + + AT Y+ A ++ + K + D
Sbjct: 24 LFSGSDSYKFEEAADLCVQAATIYRLRKE-------LNLAGDSFLKAADYQKKAGNEDEA 76
Query: 79 AQLYNNRAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDE 138
Y N + + + + F + E + +
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLE---NAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 139 LLKENPTDSTVIDLRTSCINKH 160
K + +
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVA 155
>d1d4m3_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 238
Score = 27.1 bits (60), Expect = 2.9
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 270 DEDRKYVPGRLSIYYQDPNGKPQRVPTTST-LGEV----------LTNPKYVIQAG 314
+D G ++ +YQ P P +S+ + L + ++ Q
Sbjct: 180 QQDEYTSAGYVTCWYQTGMIVPPGTPNSSSIMCFASACNDFSVRMLRDTPFISQDN 235
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 27.0 bits (59), Expect = 3.7
Identities = 7/60 (11%), Positives = 18/60 (30%)
Query: 134 HLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKI 193
+ ++K ID T N +E + + + + +I + +
Sbjct: 15 AVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQP 74
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 26.8 bits (58), Expect = 3.8
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 272 DRKYVPGRLSIYYQDPNGKPQRVPTTS 298
+ + I ++ P G + V T
Sbjct: 222 GQTF-ARTFEIKFETPEGDHEYVHQTC 247
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 26.8 bits (57), Expect = 4.1
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 133 THLCDELLKENPTDSTVIDLRTSCINKHKE 162
HL + LL+E+ + +D+ + I++
Sbjct: 14 NHLTERLLREDHYEVYGLDIGSDAISRFLN 43
>d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus
subtilis [TaxId: 1423]}
Length = 155
Score = 25.8 bits (55), Expect = 5.1
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 10/78 (12%)
Query: 216 ITLRPVHTDDNDRLVWPVLFLYPEYRITDFVQEFHEDVTF--DSMLEEMFSESPGWDEDR 273
I L P+ T++ + Y + +E + T+ +
Sbjct: 2 IMLTPMQTEEFRSYL--------TYTTKHYAEEKVKAGTWLPEDAQLLSKQVFTDLLPRG 53
Query: 274 KYVPGRLSIYYQDPNGKP 291
P +
Sbjct: 54 LETPHHHLWSLKLNEKDI 71
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 26.2 bits (57), Expect = 5.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 146 DSTVIDLRTSCINKHKEILRNERKQAQQVKKE--EKE---KERVLQIIRE 190
D V + T+C + KEI+R RKQ + + EKE + + +I+ E
Sbjct: 144 DEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSE 193
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 26.4 bits (56), Expect = 5.7
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 85 RAASNFFLKNYRSCLTDCQIALKLKPDYPKVKLRAAQCLFHLKKFEDCTHLCDELLKENP 144
+A+ + L N L D ++ L ++ +A+ L + + +N
Sbjct: 5 KASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNY 64
>d1ev13_ b.121.4.1 (3:) Human enterovirus B coat proteins {Human
echovirus 1 [TaxId: 46633]}
Length = 239
Score = 25.9 bits (57), Expect = 6.4
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 270 DEDRKYVPGRLSIYYQDPNGKPQRVPTTSTL 300
++D G ++ +YQ P +
Sbjct: 181 EKDPYTNAGFVTCWYQTSVVSPASNQPKCYM 211
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 26.2 bits (56), Expect = 6.5
Identities = 8/61 (13%), Positives = 24/61 (39%)
Query: 133 THLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERK 192
+H EL++ +L S + + + + + +++ + ++ +E K
Sbjct: 15 SHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYK 74
Query: 193 I 193
I
Sbjct: 75 I 75
>d1umha_ b.18.1.21 (A:) F-box only protein 2 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 184
Score = 25.6 bits (56), Expect = 7.9
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 21/115 (18%)
Query: 50 FNFKCNKYRNAIIN---------------YTEGLKIKCADNDVNAQLYNNRAASNFFLKN 94
F F + RN + N +G K++ D + + + +F +
Sbjct: 4 FYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDSVKKYFASS 63
Query: 95 YRSCLTDCQIALKLKP------DYPKVKLRAAQCLFHLKKFEDCTHLCDELLKEN 143
+ C I L+ + D + + L LL EN
Sbjct: 64 FEWCRKAQVIDLQAEGYWEELLDTTQPAIVVKDWYSGRTDAGSLYELTVRLLSEN 118
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 25.9 bits (55), Expect = 7.9
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 134 HLCDELLKENPTDSTVIDLRTSCINKHKEILRNERKQAQQVKKEEKEKERVLQIIRERKI 193
H LL++ ++D K + E V ++ ++ + +R
Sbjct: 17 HFVRALLRDTNHSVVIVDSLVGTHGKSDHVETREN-----VARKLQQSDGPKPPWADRYA 71
Query: 194 KLATSGKGDLKSFSDLEP 211
L GD+++ L
Sbjct: 72 ALE---VGDVRNEDFLNG 86
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 25.6 bits (56), Expect = 9.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 270 DEDRKYVPGRLSIYYQDPNGKPQRVPTTSTL 300
+D G +S++YQ P P + ++
Sbjct: 180 TQDSFTEGGYISMFYQTRIVVPLSTPKSMSM 210
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.403
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,305,947
Number of extensions: 65260
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 73
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)