BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5665
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 174/307 (56%), Gaps = 79/307 (25%)
Query: 41 FLFRQLFDSISYTHTYILAD--KLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHV 98
LFRQLF++ S T TY+LAD K ++IDPV + DRD+ LI++LGL
Sbjct: 3 LLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGL---------- 52
Query: 99 HADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDT 158
K +Y +NTHVHADH+TGTG +KT + V+S+ISK SG++AD+ + GD
Sbjct: 53 -----------KLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDK 101
Query: 159 IDFGDQQLEVRATPGHTDGCVTYVNQGEG-------MAFTGDTLLIRGCGRTDFQQGGSG 211
+ GD LEVRATPGHT GCVTYV GEG MAFTGD +LIRGCGRTDFQ+G
Sbjct: 102 VSIGDIYLEVRATPGHTAGCVTYVT-GEGADQPQPRMAFTGDAVLIRGCGRTDFQEGS-- 158
Query: 212 VPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLP 271
S +L++SV +IF+LP
Sbjct: 159 --------------------------------------------SDQLYESVHSQIFTLP 174
Query: 272 DHFRVYPAHDYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPAN 331
+YPAHDY GF STVGEE +NPRL + +E F IM+NL LS PK IDVAVPAN
Sbjct: 175 KDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKD--KETFKTIMSNLNLSYPKMIDVAVPAN 232
Query: 332 MKCGLQD 338
M GLQD
Sbjct: 233 MVXGLQD 239
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 135/319 (42%), Gaps = 79/319 (24%)
Query: 46 LFDSISYTHTYILADKLSKECVIIDPVLE-----------QADRDVTLINQLGLTLKYVI 94
FD + T +Y+L D S EC +ID VL+ AD+ + + LG +++++
Sbjct: 10 FFDPATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLL 69
Query: 95 NTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVT 154
THVH ADH++ +KT V +I HVT
Sbjct: 70 ETHVH---------------------ADHLSAAPYLKTRVGGEIAIGR---------HVT 99
Query: 155 HGDTIDFGDQQLEVRATPGHT-DGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVP 213
+ FG A P DG +Q + + GDTL + G +
Sbjct: 100 RVQDV-FGKL---FNAGPAFAHDG-----SQFDRLLDDGDTLAL----------GALSIR 140
Query: 214 VRATPGHTDGCVTYV--------NQGEGMAFTGDTLLIR--GCGRTDFQQGDSHKLFQSV 263
TPGHT C+TYV + + AF GDTL + G R DF GD+ L++S+
Sbjct: 141 AMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFMPDYGTARCDFPGGDARSLYRSI 200
Query: 264 RKEIFSLPDHFRVYPAHDYHGFSH-----STVGEEKLYNPRLGEQISEEKFVEI--MNNL 316
RK + SLP R+Y HDY STV +E N + E ++E+ FV + +
Sbjct: 201 RK-VLSLPPATRLYMCHDYQPNGRAIQYASTVADELRENVHIREGVTEDDFVAMRTARDA 259
Query: 317 KLSLPKKIDVAVPANMKCG 335
L +P + +V NM+ G
Sbjct: 260 TLDMPVLMLPSVQVNMRAG 278
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 119/295 (40%), Gaps = 70/295 (23%)
Query: 34 ENAF--SNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLK 91
EN + SN F+Q +D +Y++ + + E +IIDP+ + + + + ++ GLT+
Sbjct: 16 ENLYFQSNAMFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSY-IRVADEEGLTIT 74
Query: 92 YVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADI 151
+ TH+HAD +G + N +V + G K M N+
Sbjct: 75 HAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLG-YKNMPNHTH------------- 120
Query: 152 HVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMA-------FTGDTLLIRGCGRTD 204
V H D I G+ +L+V TPGHT ++++ EG F+GD + + GR D
Sbjct: 121 FVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPD 180
Query: 205 FQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVR 264
+ V EG + G + ++F+S+
Sbjct: 181 LLEKAVKV-------------------EGSSEIG-----------------AKQMFKSI- 203
Query: 265 KEIFSLPDHFRVYPAH--------DYHGFSHSTVGEEKLYNPRLGEQISEEKFVE 311
+ I LPD+ +++P H ST+G EK N E +E F++
Sbjct: 204 ESIKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSEN-NEATFID 257
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 27/161 (16%)
Query: 45 QLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHIT 104
+L + + YIL D+ + ++DP +A+ + + + G L Y++NTH H DH
Sbjct: 4 ELVPCLKDNYAYILHDEDTGTVGVVDP--SEAEPIIDSLKRSGRNLTYILNTHHHYDHTG 61
Query: 105 GTGKIKTMY---VINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDF 161
G ++K Y VI + + D I G D+ + GD F
Sbjct: 62 GNLELKDRYGAKVIGSAMDKDRIPGI----------------------DMALKDGDKWMF 99
Query: 162 GDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGR 202
++ V TPGHT G ++ G FTGDT+ CG+
Sbjct: 100 AGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK 140
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 208 GGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEI 267
G V V TPGHT G ++ G FTGDT+ CG+ +G ++ S++K I
Sbjct: 100 AGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGK--LFEGTPKQMLASLQK-I 156
Query: 268 FSLPDHFRVYPAHDY 282
SLPD +Y H+Y
Sbjct: 157 TSLPDDTSIYCGHEY 171
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 110/293 (37%), Gaps = 71/293 (24%)
Query: 38 SNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTH 97
SN R+ +D +Y++ + + E +IDP + +T + GL + + TH
Sbjct: 1 SNAXYLRRFYDEGLAHASYLVGCQETGEACVIDPARDVEPYLLTAKRE-GLRIVAALETH 59
Query: 98 VHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIH--VTH 155
+HAD ++G A V++ K +A H +
Sbjct: 60 IHADFVSG---------------AREXADRAGAAICVSDEGPPEWKSEYVKAYPHRLLKD 104
Query: 156 GDTIDFGDQQLEVRATPGHTDGCVTYV-------NQGEGMAFTGDTLLIRGCGRTDFQQG 208
GD + FG+ ++ V TPGHT V+Y+ F+GD + + GR D
Sbjct: 105 GDELHFGNVRIVVXHTPGHTPEHVSYLLYDGKTSPDVPXALFSGDFVFVGDVGRPD---- 160
Query: 209 GSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIF 268
LL R G + + + + F+S+RK
Sbjct: 161 --------------------------------LLERVAGESGSSEALARQXFRSLRK-FE 187
Query: 269 SLPDHFRVYPAH--------DYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIM 313
+LPDH +V PAH STVG EKL N L + E+ FV+ +
Sbjct: 188 ALPDHVQVLPAHGAGSACGKALGAVPSSTVGYEKLVNWAL-QHKDEDAFVQAL 239
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 30/169 (17%)
Query: 45 QLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHIT 104
++ +++ + Y++ D +KE I+DPV Q + V + G+ L V+ TH H DH
Sbjct: 4 EVLPALTDNYMYLVIDDETKEAAIVDPV--QPQKVVDAARKHGVKLTTVLTTHHHWDHAG 61
Query: 105 GTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQ 164
G K+ + G +I + + + TH T+ G
Sbjct: 62 GNEKL-----VKLESGLKVYGGDDRIGALTHKI----------------THLSTLQVGSL 100
Query: 165 QLEVRATPGHTDGCVTYVNQGEG-----MAFTGDTLLIRGCGRTDFQQG 208
++ ATP HT G + Y G FTGDTL + GCG+ F +G
Sbjct: 101 NVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGK--FYEG 147
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 218 PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVY 277
PGHT G V + ++ + +GD + G GR+DF +GD +L ++++++ L D
Sbjct: 130 PGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDVTFI 189
Query: 278 PAHDYHGFSHSTVGEEKLYNPRL 300
P H ST+G E+L+NP L
Sbjct: 190 PGHG----PLSTLGYERLHNPFL 208
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 107/285 (37%), Gaps = 70/285 (24%)
Query: 80 VTLINQLGLTLKYVINTH---------VHAD----------HITGTGKIKTMY----VIN 116
VT++ L Y+IN H V+AD H+ G Y +++
Sbjct: 31 VTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILS 90
Query: 117 THVHADHITGTGKIKTMVNNVQSII-------SKESGAQADIHVTHGDTIDFGDQQLEVR 169
TH H DH G K+K + + S + + +S V GD + GD +EV
Sbjct: 91 THKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVI 150
Query: 170 ATPGHTDGCVTYVNQ-----GEGMA-FTGDTLLIRGCGRTDFQQGGSGVPVRATP----- 218
P HT G V Y Q +G+A FTGDT+ I G G F +G RA
Sbjct: 151 DAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGA--FFEGDEKDMCRAMEKVYHI 208
Query: 219 ----GHTDGCVTYVNQGEG-----MAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFS 269
+ VT++ G M F+ T R F Q K +V+ S
Sbjct: 209 HKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDPS 268
Query: 270 LPDHFRVYPAHDYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMN 314
+P S++ EEK N L ++++ FV MN
Sbjct: 269 VP----------------SSLAEEKRQN--LFLRVADPAFVAKMN 295
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 218 PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVY 277
PGH+ G V + + F+GD L GR D D LF S+++ + SLP RV+
Sbjct: 123 PGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKR-LLSLPPETRVH 181
Query: 278 PAHDYHGFSHSTVGEEKLYNPRL 300
P H +T+G E NP L
Sbjct: 182 PGHG----PGTTLGLEARTNPFL 200
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 15/91 (16%)
Query: 192 GDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF 251
GDT+ + G T F ATPGHT G V Y ++ F GDTL GCGR
Sbjct: 99 GDTIRVLGEKFTLF----------ATPGHTLGHVCYFSRP--YLFCGDTLFSGGCGR--L 144
Query: 252 QQGDSHKLFQSVRKEIFSLPDHFRVYPAHDY 282
+G +++QS+ K I SLPD + AH+Y
Sbjct: 145 FEGTPSQMYQSLMK-INSLPDDTLICCAHEY 174
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 128 GKIKTMVNNVQSIISKESGAQADIHVTH----GDTIDFGDQQLEVRATPGHTDGCVTYVN 183
G +K ++ + + D TH GDTI ++ + ATPGHT G V Y +
Sbjct: 67 GGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS 126
Query: 184 QGEGMAFTGDTLLIRGCGR----TDFQQGGSGVPVRATPGHTDGCVTY 227
+ F GDTL GCGR T Q S + + + P T C +
Sbjct: 127 R--PYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAH 172
>pdb|2GMN|A Chain A, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
pdb|2GMN|B Chain B, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
Length = 274
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 45 QLFDSISYTHT-----YILADKLSKECVIIDPVLEQADRDVT-LINQLGLT---LKYVIN 95
QL D+I Y T Y++ K S+ +++D + Q+ + I +LG +K ++N
Sbjct: 22 QLIDNIYYVGTDGIAVYVI--KTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 79
Query: 96 THVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKES-----GAQAD 150
TH H DH G +IK A + G + K + D
Sbjct: 80 THAHLDHTGGFAEIKK------ETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVD 133
Query: 151 IHVTHGDTIDFGDQQLEVRATPGHTDGCVTY 181
V GD + GD L ATPGH+ GC ++
Sbjct: 134 RAVKEGDRVTLGDTTLTAHATPGHSPGCTSW 164
>pdb|3LVZ|A Chain A, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3LVZ|B Chain B, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3M8T|A Chain A, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
pdb|3M8T|B Chain B, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
Length = 294
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 45 QLFDSISYTHT-----YILADKLSKECVIIDPVLEQADRDVT-LINQLGLT---LKYVIN 95
QL D+I Y T Y++ K S+ +++D + Q+ + I +LG +K ++N
Sbjct: 42 QLIDNIYYVGTDGIAVYVI--KTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 99
Query: 96 THVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKES-----GAQAD 150
TH H DH G +IK A + G + K + D
Sbjct: 100 THAHLDHTGGFAEIKK------ETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVD 153
Query: 151 IHVTHGDTIDFGDQQLEVRATPGHTDGCVTY 181
V GD + GD L ATPGH+ GC ++
Sbjct: 154 RAVKEGDRVTLGDTTLTAHATPGHSPGCTSW 184
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 114 VINTHVHADHITGTGKIKTMVNNVQSIISKE------------SGAQADIHVTHGDTIDF 161
++ TH H DH G G I +NN + K+ +G Q +++ GD I
Sbjct: 74 IVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKT 133
Query: 162 GDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQ 206
L V TPGHTD + + + E F+GD +L G G T F+
Sbjct: 134 EGATLRVLYTPGHTDDHMALLLEEENAIFSGDCIL--GEGTTVFE 176
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 122 DHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTY 181
DH T G ++ + V+ + Q + + G+ ++ ++L V TPGH DG +
Sbjct: 119 DHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAF 178
Query: 182 VNQGEGMAFTGDTLL 196
+ EG+ GD LL
Sbjct: 179 YLEEEGVLLAGDALL 193
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 205 FQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLL 242
+ G + V TPGH DG + + EG+ GD LL
Sbjct: 156 LEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALL 193
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 67 VIIDPVLEQADRDVTL-INQLGLTL---KYVINTHVHADHITGTGKIKTMYVINTHVHAD 122
+++D E+ + V I +G L KY+++TH H DH G ++ + A
Sbjct: 38 ILVDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGGISAMQKL------TGAT 91
Query: 123 HITGTGKIKTMVNNVQSIISKESGAQADI-------HVTHGDTIDFGDQQLEVRATPGHT 175
+ G + T+ V + G+ ++ V G+ + G ++ ATPGHT
Sbjct: 92 VLAGAANVDTLRTGVSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHT 151
Query: 176 DGCVTYVNQ 184
+G +T+ Q
Sbjct: 152 EGGITWTWQ 160
>pdb|1P9E|A Chain A, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
pdb|1P9E|B Chain B, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
Length = 331
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 31/144 (21%)
Query: 108 KIKTMYVINTHVHADHITG--TGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQ 165
++ +Y+ TH+H DH+ G G+ N V KE AD ++ + D +
Sbjct: 139 QVDEIYI--THMHPDHVGGLMVGEQLAFPNAVVRADQKE----ADFWLSQTNLDKAPDDE 192
Query: 166 LEVRATPGHTDGCVT----YVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHT 221
+ G G + YV G+ F+G+T L+ G+ A+ GHT
Sbjct: 193 -----SKGFFKGAMASLNPYVKAGKFKPFSGNTDLV------------PGIKALASHGHT 235
Query: 222 DGCVTYV--NQGEGMAFTGDTLLI 243
G TYV +QG+ +A GD +L+
Sbjct: 236 PGHTTYVVESQGQKLALLGDLILV 259
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 22/93 (23%)
Query: 111 TMYVINTHVHADHITGTGKIKTMVNNVQSIISKE-----SGAQADIHVTH---------- 155
T ++ +H H DH G+ IK ++ ++ SG ++D H +
Sbjct: 64 TKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQST 123
Query: 156 -------GDTIDFGDQQLEVRATPGHTDGCVTY 181
G+ ++ G L TPGHT GC T+
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRGCTTW 156
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4
(Gcp4)
Length = 677
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 9 VQWTITFALAHCVSSARNYSSVHILENAFSNGFLFRQL-----FDSISYTHTYILADKLS 63
++W + +A V + + Y V +LE+ FS L Q+ F+SI H + L++ L+
Sbjct: 512 IKWRLRNHMAFLVDNLQYYLQVDVLESQFSQ--LLHQINSTRDFESIRLAHDHFLSNLLA 569
Query: 64 KECVIIDPVL 73
+ +++ PV
Sbjct: 570 QSFILLKPVF 579
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 22/93 (23%)
Query: 111 TMYVINTHVHADHITGTGKIKTMVNNVQSIISKE-----SGAQADIHVTH---------- 155
T ++ +H H DH G+ IK ++ ++ SG ++D H +
Sbjct: 64 TKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQST 123
Query: 156 -------GDTIDFGDQQLEVRATPGHTDGCVTY 181
G+ ++ G L TPGHT GC T+
Sbjct: 124 VDKVLHDGERVELGGTVLTAHLTPGHTRGCTTW 156
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 69 IDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMYVI 115
I P + + DR V ++ ++G L Y+I++H+H DH G G +I
Sbjct: 77 ILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPII 126
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 69 IDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMYVI 115
I P + + DR V ++ ++G L Y+I++H+H DH G G +I
Sbjct: 73 ILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPII 122
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 69 IDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMYVI 115
I P + + DR V ++ ++G L Y+I++H+H DH G G +I
Sbjct: 75 ILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPII 124
>pdb|1B35|B Chain B, Cricket Paralysis Virus (Crpv)
Length = 255
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 75 QADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMV 134
+ D ++++ ++ + + YV + H++ + ITG G ++YV+ D ++GTG I+ V
Sbjct: 157 RTDLELSVGTEVEMRIPYV-SPHLYYNLITGQGSFGSIYVVVYSQLHDQVSGTGSIEYTV 215
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 63 SKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHA- 121
K V ID + + D + +++L Y++ TH+H DHI ++ +Y V +
Sbjct: 28 EKLTVXIDAGVSNSIADFSFLDKL----DYIVLTHLHIDHIGLLPELLQVYKAKVLVKSG 83
Query: 122 --DHITGTGKIKTMVNNVQSI----------ISKESGAQADIHVTHGDTIDFGDQQLEVR 169
++T +K + + + + + K+ I V + D G + +
Sbjct: 84 FKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRXRLI 143
Query: 170 ATPGHTDGCVTYVNQGEGMAFTGDT 194
TPGH + + + FTGD+
Sbjct: 144 YTPGHARHHXSVLV--DDFLFTGDS 166
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 77 DRDVTLINQLGL-TLKYVINTHVHADHITGTGKIKTMYVINT---HVHAD-HITGTGKIK 131
DR + +L + L +++ TH H+DHI ++ + Y ++ ++D IT + ++
Sbjct: 64 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 123
Query: 132 TMVNNVQSII--SKESGAQADIHVTHGDT-IDFGDQQLEVRATPGHTDGC 178
+ ++ + E+G ++T GD FGD +++ TD
Sbjct: 124 DNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSS 173
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 186 EGMAFTGDTLLIRG------CGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGD 239
+G T +TLL R G T FQ + V + TPGH D G
Sbjct: 37 KGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLS--VLDGA 94
Query: 240 TLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGFSHSTVGEEKLYNPR 299
LLI D Q + LF ++RK +P F + D +G STV ++ +
Sbjct: 95 ILLISA---KDGVQAQTRILFHALRK--MGIPTIFFINKI-DQNGIDLSTVYQD--IKEK 146
Query: 300 LGEQISEEKFVEIMNNL 316
L +I ++ VE+ N+
Sbjct: 147 LSAEIVIKQKVELYPNV 163
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 76 ADRDVTLINQLGL-TLKYVINTHVHADHITGTGKIKTMYVINT---HVHAD-HITGTGKI 130
DR + +L + L +++ TH H+DHI ++ + Y ++ ++D IT + ++
Sbjct: 62 TDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERL 121
Query: 131 KTMVNNVQSII--SKESGAQADIHVTHGDT-IDFGDQQLEVRATPGHTDGC 178
+ ++ + E+G ++T GD FGD +++ TD
Sbjct: 122 WDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSS 172
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 67 VIIDP-VLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMYVINTHVHAD 122
+IIDP L D ++LG++ + V+ THVH DHI ++ N +
Sbjct: 47 IIIDPGNLSSXDELEEKFSELGISPDDITDVLFTHVHLDHI-----FNSVLFENATFYVH 101
Query: 123 HITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYV 182
+ T + V I SK + ++ + G+ F D++++V TP H ++++
Sbjct: 102 EVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLF-DEKVKVFHTPWHAREHLSFL 160
Query: 183 NQGEG---MAFTGD 193
E + TGD
Sbjct: 161 LDTENAGRVLITGD 174
>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With
The Elastase Inhibitor Gr143783
Length = 241
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNYSSV 30
GGTL W +T AHC+SS+R Y V
Sbjct: 31 GGTLVDQSWVLT--AAHCISSSRTYRVV 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,225,798
Number of Sequences: 62578
Number of extensions: 492910
Number of successful extensions: 1268
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 78
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)