Query psy5665
Match_columns 344
No_of_seqs 196 out of 2605
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:29:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02962 hydroxyacylglutathion 100.0 2.6E-39 5.7E-44 285.4 24.7 237 37-337 7-246 (251)
2 KOG0814|consensus 100.0 6.6E-40 1.4E-44 260.9 16.2 235 35-338 3-237 (237)
3 PLN02469 hydroxyacylglutathion 100.0 1.2E-31 2.7E-36 238.5 20.0 192 52-315 11-239 (258)
4 PLN02398 hydroxyacylglutathion 100.0 7.6E-30 1.7E-34 232.1 19.7 201 29-313 75-307 (329)
5 TIGR03413 GSH_gloB hydroxyacyl 100.0 6.6E-29 1.4E-33 220.6 17.8 188 51-313 8-227 (248)
6 PRK10241 hydroxyacylglutathion 100.0 1.3E-28 2.8E-33 219.0 17.1 187 51-314 10-229 (251)
7 KOG0813|consensus 99.9 1E-24 2.3E-29 189.2 13.2 193 50-313 10-241 (265)
8 COG0491 GloB Zn-dependent hydr 99.8 1.4E-19 3.1E-24 160.6 17.3 183 51-281 23-211 (252)
9 PRK11921 metallo-beta-lactamas 99.8 7.6E-19 1.7E-23 166.5 18.1 131 50-196 30-165 (394)
10 PF00753 Lactamase_B: Metallo- 99.8 1.1E-18 2.5E-23 147.9 15.2 179 50-280 3-194 (194)
11 PRK05452 anaerobic nitric oxid 99.8 1.3E-18 2.9E-23 167.8 15.2 132 50-196 32-169 (479)
12 smart00849 Lactamase_B Metallo 99.8 7E-17 1.5E-21 136.5 17.6 138 51-194 4-143 (183)
13 COG0426 FpaA Uncharacterized f 99.7 1.5E-16 3.2E-21 145.8 13.7 130 50-195 33-167 (388)
14 PRK11539 ComEC family competen 99.5 2.6E-12 5.7E-17 131.1 18.9 99 51-174 509-613 (755)
15 TIGR00649 MG423 conserved hypo 99.5 1.2E-12 2.5E-17 125.6 14.5 136 51-196 12-161 (422)
16 PF14597 Lactamase_B_5: Metall 99.4 2.6E-12 5.7E-17 104.5 12.9 159 51-281 21-181 (199)
17 TIGR00361 ComEC_Rec2 DNA inter 99.4 1.5E-11 3.2E-16 124.1 18.8 100 51-171 448-553 (662)
18 COG2333 ComEC Predicted hydrol 99.3 4.1E-11 8.9E-16 107.6 14.4 183 44-300 45-234 (293)
19 COG1237 Metal-dependent hydrol 99.1 6.7E-10 1.5E-14 96.1 11.4 71 51-124 20-95 (259)
20 TIGR03675 arCOG00543 arCOG0054 99.1 2.2E-09 4.7E-14 106.9 13.7 141 50-196 185-349 (630)
21 COG0595 mRNA degradation ribon 99.0 2.3E-09 5.1E-14 104.1 10.8 139 49-196 18-169 (555)
22 PRK04286 hypothetical protein; 99.0 7.5E-09 1.6E-13 94.5 13.5 141 52-195 14-187 (298)
23 PRK11244 phnP carbon-phosphoru 99.0 4.9E-09 1.1E-13 93.5 10.5 126 51-195 35-164 (250)
24 PRK02113 putative hydrolase; P 98.9 9.4E-09 2E-13 91.8 11.2 130 51-195 33-171 (252)
25 TIGR02651 RNase_Z ribonuclease 98.9 1.8E-08 3.9E-13 92.3 13.1 121 51-184 16-147 (299)
26 PRK05184 pyrroloquinoline quin 98.9 7.6E-09 1.6E-13 94.7 10.5 138 51-194 37-199 (302)
27 COG2015 Alkyl sulfatase and re 98.9 9E-09 2E-13 95.4 10.6 218 43-283 117-350 (655)
28 PRK02126 ribonuclease Z; Provi 98.9 2E-08 4.3E-13 92.9 12.9 62 46-113 9-71 (334)
29 TIGR02649 true_RNase_BN ribonu 98.9 2.7E-08 5.9E-13 91.3 13.1 122 51-184 15-149 (303)
30 TIGR03307 PhnP phosphonate met 98.9 1.7E-08 3.6E-13 89.4 11.1 125 52-195 26-154 (238)
31 TIGR02108 PQQ_syn_pqqB coenzym 98.9 1.4E-08 2.9E-13 92.8 10.0 132 53-194 38-199 (302)
32 PRK00685 metal-dependent hydro 98.8 1.9E-08 4E-13 88.4 9.4 124 52-196 7-145 (228)
33 COG1236 YSH1 Predicted exonucl 98.8 2E-08 4.3E-13 96.0 8.3 138 50-194 11-164 (427)
34 PF12706 Lactamase_B_2: Beta-l 98.6 1.4E-07 3E-12 80.4 8.3 124 66-195 2-139 (194)
35 PRK00055 ribonuclease Z; Revie 98.6 2E-07 4.4E-12 83.9 8.3 54 53-112 20-76 (270)
36 COG1782 Predicted metal-depend 98.5 5.6E-07 1.2E-11 84.3 9.1 158 33-196 171-355 (637)
37 PF13483 Lactamase_B_3: Beta-l 98.4 1.1E-06 2.5E-11 72.9 8.2 103 52-196 6-116 (163)
38 KOG4736|consensus 98.4 1.5E-06 3.2E-11 76.5 8.2 109 54-194 96-211 (302)
39 KOG1136|consensus 98.4 1.3E-06 2.9E-11 77.8 7.9 140 49-194 13-179 (501)
40 COG2248 Predicted hydrolase (m 98.2 2.6E-05 5.6E-10 67.3 12.7 134 54-195 16-186 (304)
41 PRK11709 putative L-ascorbate 98.0 3E-05 6.4E-10 72.3 10.0 22 150-171 161-182 (355)
42 TIGR02650 RNase_Z_T_toga ribon 98.0 3.2E-05 6.9E-10 68.9 8.7 51 54-111 11-62 (277)
43 COG1234 ElaC Metal-dependent h 98.0 2.4E-05 5.2E-10 71.2 7.8 54 53-112 20-76 (292)
44 COG2220 Predicted Zn-dependent 97.9 0.00018 3.8E-09 64.5 12.1 57 51-109 12-72 (258)
45 COG1235 PhnP Metal-dependent h 97.8 4.3E-05 9.4E-10 68.9 6.7 52 66-121 42-94 (269)
46 KOG1137|consensus 97.8 2.5E-05 5.4E-10 74.1 4.5 152 29-194 11-182 (668)
47 PLN02469 hydroxyacylglutathion 97.5 4E-05 8.7E-10 68.5 1.2 26 112-137 48-73 (258)
48 PLN02398 hydroxyacylglutathion 97.4 0.0001 2.2E-09 67.9 2.5 23 112-134 123-145 (329)
49 KOG1135|consensus 97.3 0.0018 4E-08 63.3 9.9 144 49-194 11-172 (764)
50 COG0491 GloB Zn-dependent hydr 97.1 0.00023 5.1E-09 62.6 1.7 48 149-196 123-170 (252)
51 PRK05452 anaerobic nitric oxid 96.8 0.001 2.2E-08 64.9 3.7 134 112-283 73-230 (479)
52 KOG0813|consensus 96.5 0.0015 3.2E-08 57.7 2.4 120 205-332 102-228 (265)
53 TIGR03413 GSH_gloB hydroxyacyl 96.3 0.007 1.5E-07 53.8 5.4 103 220-332 103-214 (248)
54 PRK11921 metallo-beta-lactamas 96.2 0.0017 3.8E-08 61.8 1.0 93 112-241 71-164 (394)
55 KOG2121|consensus 96.0 0.0033 7.1E-08 62.2 1.9 59 53-112 461-524 (746)
56 PLN02962 hydroxyacylglutathion 95.8 0.0069 1.5E-07 53.9 3.1 26 205-230 110-135 (251)
57 COG0426 FpaA Uncharacterized f 94.7 0.066 1.4E-06 50.1 5.6 130 112-281 74-223 (388)
58 PRK10241 hydroxyacylglutathion 94.6 0.024 5.3E-07 50.5 2.7 103 220-332 106-215 (251)
59 PF02112 PDEase_II: cAMP phosp 93.5 0.11 2.4E-06 48.0 4.8 56 51-106 15-96 (335)
60 KOG0814|consensus 93.5 0.045 9.8E-07 44.9 1.9 25 204-228 105-129 (237)
61 TIGR00649 MG423 conserved hypo 92.9 0.06 1.3E-06 51.8 2.2 39 205-243 121-162 (422)
62 PF13691 Lactamase_B_4: tRNase 92.1 0.75 1.6E-05 31.4 6.0 46 54-105 13-63 (63)
63 KOG1361|consensus 91.3 0.33 7.1E-06 46.7 5.0 93 89-196 112-207 (481)
64 smart00849 Lactamase_B Metallo 89.3 0.3 6.6E-06 40.3 2.7 75 204-280 107-183 (183)
65 COG5212 PDE1 Low-affinity cAMP 74.9 1.1 2.5E-05 39.6 0.5 18 89-106 112-129 (356)
66 PF14234 DUF4336: Domain of un 68.1 32 0.0007 31.1 8.1 58 54-113 21-81 (285)
67 KOG3592|consensus 65.0 7.8 0.00017 39.1 3.8 51 64-115 57-107 (934)
68 COG0595 mRNA degradation ribon 63.4 4.3 9.4E-05 40.3 1.8 101 112-243 68-170 (555)
69 PF14572 Pribosyl_synth: Phosp 57.1 16 0.00034 30.8 3.8 32 68-100 92-123 (184)
70 PRK02269 ribose-phosphate pyro 41.0 46 0.001 30.8 4.7 35 63-98 217-255 (320)
71 COG0462 PrsA Phosphoribosylpyr 37.3 91 0.002 28.7 5.8 43 55-98 206-252 (314)
72 KOG4736|consensus 37.0 39 0.00084 30.6 3.3 36 205-241 173-212 (302)
73 PRK11627 hypothetical protein; 36.5 2.7E+02 0.0058 23.7 8.4 20 5-24 1-22 (192)
74 PRK04923 ribose-phosphate pyro 35.2 55 0.0012 30.2 4.2 37 63-100 217-257 (319)
75 COG1236 YSH1 Predicted exonucl 33.7 29 0.00063 33.5 2.2 25 216-240 138-164 (427)
76 PRK00553 ribose-phosphate pyro 30.2 67 0.0014 29.9 3.9 37 62-98 217-256 (332)
77 PLN02297 ribose-phosphate pyro 29.9 68 0.0015 29.7 3.8 35 63-98 230-268 (326)
78 PF07355 GRDB: Glycine/sarcosi 29.2 73 0.0016 29.7 3.8 38 233-281 52-89 (349)
79 COG0052 RpsB Ribosomal protein 28.4 83 0.0018 27.8 3.9 39 64-104 158-196 (252)
80 PRK07199 phosphoribosylpyropho 28.2 49 0.0011 30.3 2.6 35 63-98 211-249 (301)
81 KOG3798|consensus 27.9 98 0.0021 27.5 4.2 16 90-105 133-148 (343)
82 cd01833 XynB_like SGNH_hydrola 27.2 1.1E+02 0.0023 24.3 4.2 41 234-274 3-43 (157)
83 TIGR03675 arCOG00543 arCOG0054 25.4 55 0.0012 33.4 2.6 32 210-242 314-349 (630)
84 PF05582 Peptidase_U57: YabG p 23.4 81 0.0018 28.4 3.0 25 257-281 140-164 (287)
85 PRK02458 ribose-phosphate pyro 22.0 89 0.0019 28.9 3.1 36 62-98 217-256 (323)
86 TIGR01917 gly_red_sel_B glycin 20.6 1.3E+02 0.0028 28.9 3.9 38 233-281 48-85 (431)
87 TIGR01918 various_sel_PB selen 20.2 1.3E+02 0.0029 28.8 3.8 38 233-281 48-85 (431)
No 1
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=2.6e-39 Score=285.45 Aligned_cols=237 Identities=60% Similarity=0.954 Sum_probs=185.2
Q ss_pred ccCCeeEEEEEecCcceEEEEEEeCC--CCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhh-
Q psy5665 37 FSNGFLFRQLFDSISYTHTYILADKL--SKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMY- 113 (344)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~- 113 (344)
.+..|+++|++.+..++|||++.+++ +++++|||||....+.+++.+++.+.+|++|++||.|.||++|+..+++++
T Consensus 7 ~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~ 86 (251)
T PLN02962 7 SSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLP 86 (251)
T ss_pred CCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCC
Confidence 34458999999999999999998752 468999999965568888999999999999999999999999977776543
Q ss_pred eeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecc
Q psy5665 114 VINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGD 193 (344)
Q Consensus 114 ~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD 193 (344)
.+.++. ........+..+.+++.+.+|+..++++++||||+++++++.++.. |
T Consensus 87 ~a~v~~----------------------~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~-----~ 139 (251)
T PLN02962 87 GVKSII----------------------SKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGP-----D 139 (251)
T ss_pred CCeEEe----------------------ccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCC-----C
Confidence 222221 1111111233344555555555555555555555555555443200 0
Q ss_pred eeeeccCCCccccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCc
Q psy5665 194 TLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDH 273 (344)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~ 273 (344)
.+..+++|+||++|.++++++++++++..++++|+++++..++++
T Consensus 140 -----------------------------------~~~~~~lftGD~Lf~~g~Gr~d~~~g~~~~l~~Sl~~~l~~L~~~ 184 (251)
T PLN02962 140 -----------------------------------QPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQIFTLPKD 184 (251)
T ss_pred -----------------------------------CCccceEEECCeeccCCcCCCCCCCCCHHHHHHHHHHHHHcCCCC
Confidence 012468999999999999999999999999999997789999999
Q ss_pred eEEeeCCCCCCCccccHHHHHHcCCCCCCCCCHHHHHHHhhhCCCCCCcccchhhHhhhhcCCC
Q psy5665 274 FRVYPAHDYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPANMKCGLQ 337 (344)
Q Consensus 274 ~~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~ 337 (344)
++|+|||||...+.++++++++.|+++.. +.++|++.+.+..++.|+.+...++.||.+|++
T Consensus 185 ~~i~PGHg~~~~~~tti~~e~~~n~~l~~--~~~~fv~~~~~~~~~~p~~~~~~~~~n~~~~~~ 246 (251)
T PLN02962 185 TLIYPAHDYKGFTVSTVGEEMLYNPRLTK--DEETFKTIMENLNLPYPKMIDVAVPANMVCGLQ 246 (251)
T ss_pred eEEECCCCCCCCCCcCHHHHHhhCcccCC--CHHHHHHHHhhCCCCCchHHHHHHHHHHHcCCC
Confidence 88999999987788999999999999986 999999999999999999999999999999987
No 2
>KOG0814|consensus
Probab=100.00 E-value=6.6e-40 Score=260.91 Aligned_cols=235 Identities=60% Similarity=0.970 Sum_probs=216.9
Q ss_pred ecccCCeeEEEEEecCcceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe
Q psy5665 35 NAFSNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV 114 (344)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~ 114 (344)
.|++...+++|+|...++..+|++.+-.++++++|||-.....+..+.++++|+++.+-++||.|+||+-|
T Consensus 3 ~pfs~~~~frqlfe~~SsTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTG--------- 73 (237)
T KOG0814|consen 3 APFSNAPIFRQLFEFESSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITG--------- 73 (237)
T ss_pred CCccccHHHHHHhccccceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccc---------
Confidence 35666677899999999999999999888999999999776788888999999999999999999999999
Q ss_pred eccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecce
Q psy5665 115 INTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDT 194 (344)
Q Consensus 115 v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~ 194 (344)
...++..+|+.+..+++......+..+++|+.+++|+..+++..+||||+|++.++..+
T Consensus 74 ------------tg~Lkt~~pg~kSVis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d--------- 132 (237)
T KOG0814|consen 74 ------------TGLLKTLLPGCKSVISSASGAKADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHD--------- 132 (237)
T ss_pred ------------cchHHHhcccHHHHhhhccccccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecC---------
Confidence 88888889999999999999999999999999999999998888888888887777765
Q ss_pred eeeccCCCccccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCce
Q psy5665 195 LLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHF 274 (344)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~ 274 (344)
.+..|+||+++...||+++|..+.++..++|..+++..|+.+.
T Consensus 133 -------------------------------------~~~aFTGDalLIRgCGRTDFQqG~~~~LyesVH~kIFTLP~d~ 175 (237)
T KOG0814|consen 133 -------------------------------------LRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLPEDY 175 (237)
T ss_pred -------------------------------------cceeeecceeEEeccCccchhccChHHHHHHHhHHheeCCCce
Confidence 5678888888888999999999999999999999999999999
Q ss_pred EEeeCCCCCCCccccHHHHHHcCCCCCCCCCHHHHHHHhhhCCCCCCcccchhhHhhhhcCCCC
Q psy5665 275 RVYPAHDYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPANMKCGLQD 338 (344)
Q Consensus 275 ~v~pgHg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 338 (344)
+|+|+|.|.+...+++.+++.+||.|+. +.++|++.|.++.++.|++++.++++||.||.+.
T Consensus 176 ~iYpaHdY~G~~~stV~EEk~~NPRLTk--~~eeFv~IM~NLnL~yPk~Id~aVpanm~~g~~~ 237 (237)
T KOG0814|consen 176 LIYPAHDYKGFLVSTVWEEKNLNPRLTK--SKEEFVKIMKNLNLPYPKQIDKAVPANMVCGKQH 237 (237)
T ss_pred EEeeccccCceEeeehhhhhccCccccc--CHHHHHHHHHhcCCCChhhhCcccchhhccccCC
Confidence 9999999999999999999999999999 9999999999999999999999999999999873
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.2e-31 Score=238.47 Aligned_cols=192 Identities=30% Similarity=0.458 Sum_probs=139.0
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhh-eeccccccccccchhHH
Q psy5665 52 YTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMY-VINTHVHADHITGTGKI 130 (344)
Q Consensus 52 ~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~-~v~~~~~~d~~~~~~~l 130 (344)
.+++|+|.++++++++|||||. .+.+++.+++.+.+|++|++||.|.||+||+..+.+.+ .+.++++...
T Consensus 11 dNy~Yli~d~~~~~~vlIDp~~--~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~------- 81 (258)
T PLN02469 11 DNYAYLIIDESTKDAAVVDPVD--PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLD------- 81 (258)
T ss_pred ceEEEEEEeCCCCeEEEECCCC--hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechh-------
Confidence 3459999987667899999994 58889999999999999999999999999977776653 2333322110
Q ss_pred HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCccccCCCC
Q psy5665 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~~~~~ 210 (344)
. .......+.+++.+.+|+ +.
T Consensus 82 --~------------~~~~~~~v~~gd~i~lg~---------------------------------------------~~ 102 (258)
T PLN02469 82 --N------------VKGCTHPVENGDKLSLGK---------------------------------------------DV 102 (258)
T ss_pred --c------------CCCCCeEeCCCCEEEECC---------------------------------------------ce
Confidence 0 000122334444444442 12
Q ss_pred CceeecCCCCCCCceeeeecC----cceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCCCCCC-
Q psy5665 211 GVPVRATPGHTDGCVTYVNQG----EGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGF- 285 (344)
Q Consensus 211 ~~~~~~~pGHt~g~~~~~~~~----~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg~~~~- 285 (344)
.+++++|||||+||++|+.+. ++++|+||++|.+++|+. ++++..++++|+++++..++++++|+|||||+..
T Consensus 103 ~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~--~~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~n 180 (258)
T PLN02469 103 NILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKF--FEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKN 180 (258)
T ss_pred EEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCC--CCCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhH
Confidence 345555555555555555432 358999999999888884 6789999999997678889988889999998743
Q ss_pred -----------------------------c--cccHHHHHHcCCCCCCCCCHHHHHHHhhh
Q psy5665 286 -----------------------------S--HSTVGEEKLYNPRLGEQISEEKFVEIMNN 315 (344)
Q Consensus 286 -----------------------------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 315 (344)
+ ++++++|+++||||+. +..++.+.+..
T Consensus 181 l~Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~--~~~~~~~~~~~ 239 (258)
T PLN02469 181 LKFALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRV--DLPEIQEKVGC 239 (258)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecC--CCHHHHHHhcC
Confidence 2 7899999999999998 77788877753
No 4
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.97 E-value=7.6e-30 Score=232.10 Aligned_cols=201 Identities=30% Similarity=0.443 Sum_probs=142.9
Q ss_pred cceeeeecccCCeeEEEEEecCcceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhh
Q psy5665 29 SVHILENAFSNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGK 108 (344)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~ 108 (344)
.+++..+|.- ..+++|+|.+++++.+++||||. .+.+++.+++.+.+|++|++||.|.||+||+..
T Consensus 75 ~~~i~~ip~l------------~dNy~Yli~d~~t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~ 140 (329)
T PLN02398 75 SLQIELVPCL------------KDNYAYLLHDEDTGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLE 140 (329)
T ss_pred CcEEEEEeee------------CceEEEEEEECCCCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHH
Confidence 4556666654 44689999887677899999985 578899999999999999999999999999888
Q ss_pred hhhhheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCce
Q psy5665 109 IKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGM 188 (344)
Q Consensus 109 ~~~~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~i 188 (344)
+.+.+.+.++++.... ...+ ..+..+.+|+.+.+|+.
T Consensus 141 L~~~~ga~V~g~~~~~-------~~i~------------~~d~~v~dGd~i~lgg~------------------------ 177 (329)
T PLN02398 141 LKARYGAKVIGSAVDK-------DRIP------------GIDIVLKDGDKWMFAGH------------------------ 177 (329)
T ss_pred HHHhcCCEEEEehHHh-------hhcc------------CCcEEeCCCCEEEECCe------------------------
Confidence 8887655555443210 0000 12233444444444444
Q ss_pred eeecceeeeccCCCccccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHh
Q psy5665 189 AFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIF 268 (344)
Q Consensus 189 L~~GD~~~~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~ 268 (344)
.++++++||||+||++|+.++.+++|+||++|.+++++. +.++.+++++|+ ++|.
T Consensus 178 ----------------------~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~--feg~~~~~~~SL-~rL~ 232 (329)
T PLN02398 178 ----------------------EVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKL--FEGTPEQMLSSL-QKII 232 (329)
T ss_pred ----------------------EEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCC--CCCCHHHHHHHH-HHHH
Confidence 445555556666666665555678899999998878774 577899999999 6999
Q ss_pred cCCCceEEeeCCCCCCC--------------------------------ccccHHHHHHcCCCCCCCCCHHHHHHHh
Q psy5665 269 SLPDHFRVYPAHDYHGF--------------------------------SHSTVGEEKLYNPRLGEQISEEKFVEIM 313 (344)
Q Consensus 269 ~l~~~~~v~pgHg~~~~--------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 313 (344)
.+++++.|+|||||+.. .+++++.|+++||||+. +..++.+.+
T Consensus 233 ~L~~~t~VypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~--~~~~v~~~~ 307 (329)
T PLN02398 233 SLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRT--SSTDIRKSL 307 (329)
T ss_pred cCCCCeEEECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCcCCccHHHHHhhCCeecC--CCHHHHHHh
Confidence 99998889999998632 26677777777777776 555555554
No 5
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.96 E-value=6.6e-29 Score=220.60 Aligned_cols=188 Identities=29% Similarity=0.469 Sum_probs=131.5
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccchhHH
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l 130 (344)
..+++|+|.+++ ++++|||||.. +.+++.+++.+.++++|++||.|.||+||+..+.+.+.+.++++...
T Consensus 8 ~dN~~yli~~~~-~~~ilID~g~~--~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~~~V~~~~~~------- 77 (248)
T TIGR03413 8 SDNYIWLLHDPD-GQAAVVDPGEA--EPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFPAPVYGPAEE------- 77 (248)
T ss_pred ccEEEEEEEcCC-CCEEEEcCCCh--HHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCCCeEEecccc-------
Confidence 457999998864 57999999963 67889999999999999999999999999888776654333332211
Q ss_pred HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCccccCCCC
Q psy5665 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~~~~~ 210 (344)
.. ......+.+++.+.+|+..+
T Consensus 78 --~~------------~~~~~~v~~g~~~~~g~~~i-------------------------------------------- 99 (248)
T TIGR03413 78 --RI------------PGITHPVKDGDTVTLGGLEF-------------------------------------------- 99 (248)
T ss_pred --cC------------CCCcEEeCCCCEEEECCEEE--------------------------------------------
Confidence 00 00123344444444444444
Q ss_pred CceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCCCCCC-----
Q psy5665 211 GVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGF----- 285 (344)
Q Consensus 211 ~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg~~~~----- 285 (344)
+++.+||||+||++|+.++++++|+||+++.+.+++. ..++..++++|+ ++++.++++++|+|||||+..
T Consensus 100 --~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~--~~~~~~~~~~Sl-~~l~~l~~~~~i~pGH~~~~~n~~fa 174 (248)
T TIGR03413 100 --EVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRL--FEGTPEQMYDSL-QRLAALPDDTLVYCAHEYTLSNLRFA 174 (248)
T ss_pred --EEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCC--CCCCHHHHHHHH-HHHHcCCCCeEEECCCCchHHHHHHH
Confidence 4455555555555555555678888888887777764 567899999999 699999999889999996541
Q ss_pred ---------------------------ccccHHHHHHcCCCCCCCCCHHHHHHHh
Q psy5665 286 ---------------------------SHSTVGEEKLYNPRLGEQISEEKFVEIM 313 (344)
Q Consensus 286 ---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 313 (344)
.+++++.|+++||||+. +..++.+.+
T Consensus 175 ~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~--~~~~~~~~~ 227 (248)
T TIGR03413 175 LTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRA--DDPAVRAAL 227 (248)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecC--CCHHHHHHh
Confidence 26677777777777776 555555554
No 6
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.96 E-value=1.3e-28 Score=219.04 Aligned_cols=187 Identities=28% Similarity=0.439 Sum_probs=133.0
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccchhHH
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l 130 (344)
..+++|++.++ +++++|||||. .+.+++.+++.+.++++|++||.|.||+||+..+.+.+
T Consensus 10 ~dNy~~li~~~-~~~~ilIDpg~--~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~----------------- 69 (251)
T PRK10241 10 DDNYIWVLNDE-AGRCLIVDPGE--AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKF----------------- 69 (251)
T ss_pred cceEEEEEEcC-CCcEEEECCCC--hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHC-----------------
Confidence 34788999875 36799999996 47889999999999999999999999999966665543
Q ss_pred HhhhhhhHHhhhcccc-cccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCccccCCC
Q psy5665 131 KTMVNNVQSIISKESG-AQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGG 209 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~~~~ 209 (344)
+..+.+.+.... ......+.+++. +.+++
T Consensus 70 ----~~~~V~~~~~~~~~~~~~~v~~g~~----------------------------------------------i~ig~ 99 (251)
T PRK10241 70 ----PQIVVYGPQETQDKGTTQVVKDGET----------------------------------------------AFVLG 99 (251)
T ss_pred ----CCCEEEecccccccCCceEeCCCCE----------------------------------------------EEeCC
Confidence 221111110000 000111122222 33445
Q ss_pred CCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCCCCCC----
Q psy5665 210 SGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGF---- 285 (344)
Q Consensus 210 ~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg~~~~---- 285 (344)
..++++.+||||+||++|+. ++.+|+||++|.+++++. +.++..++++|+ +++..++++++|+|||+|+-.
T Consensus 100 ~~~~vi~tPGHT~ghi~~~~--~~~lFtGDtlf~~g~gr~--f~g~~~~~~~Sl-~kl~~l~~~t~i~pgH~y~~~n~~f 174 (251)
T PRK10241 100 HEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRL--FEGTASQMYQSL-KKINALPDDTLICCAHEYTLSNMKF 174 (251)
T ss_pred cEEEEEEcCCCCccceeeec--CCcEEEcCeeccCCcCCC--CCCCHHHHHHHH-HHHHcCCCCEEEECCCCChhhhHHH
Confidence 56777777788888888765 368999999998888875 578899999999 599999999989999997631
Q ss_pred ----------------------------ccccHHHHHHcCCCCCCCCCHHHHHHHhh
Q psy5665 286 ----------------------------SHSTVGEEKLYNPRLGEQISEEKFVEIMN 314 (344)
Q Consensus 286 ----------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 314 (344)
.+++++.|++.||||+. +..++.+.++
T Consensus 175 a~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~--~~~~~~~~~~ 229 (251)
T PRK10241 175 ALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRT--EDIDLINVIN 229 (251)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecC--CCHHHHHHhc
Confidence 36677788888888876 5556666554
No 7
>KOG0813|consensus
Probab=99.92 E-value=1e-24 Score=189.22 Aligned_cols=193 Identities=32% Similarity=0.526 Sum_probs=131.4
Q ss_pred CcceEEEEEEe-CCCCeEEEEeCCCCChHHHHHHHHH---cCCcccEEEecCCchhhhcChhhhhhhh--eecccccccc
Q psy5665 50 ISYTHTYILAD-KLSKECVIIDPVLEQADRDVTLINQ---LGLTLKYVINTHVHADHITGTGKIKTMY--VINTHVHADH 123 (344)
Q Consensus 50 ~~~~~~~li~~-~~~~~~iLIDtG~~~~~~~~~~l~~---~~~~i~~Vi~TH~H~DH~gg~~~~~~~~--~v~~~~~~d~ 123 (344)
...+|+||+.+ +....+.++||..+ +.+...+++ .+.++.+|+.||.|+||+||+..+.+.. .+.++.+.
T Consensus 10 ~~~Ny~YLl~~~~~~~~a~~vDP~~p--e~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~-- 85 (265)
T KOG0813|consen 10 LQDNYMYLLGDGDKTIDADLVDPAEP--EYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA-- 85 (265)
T ss_pred cCCceEEEEecccceeeeeeecCcch--HHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCC--
Confidence 36689999998 54555666666643 666666665 6788999999999999999977776542 22222221
Q ss_pred ccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCc
Q psy5665 124 ITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRT 203 (344)
Q Consensus 124 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~ 203 (344)
+.........+++++.+.+++..++.++|||||.+++++++.+ .
T Consensus 86 -------------------~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~----~------------- 129 (265)
T KOG0813|consen 86 -------------------DDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTE----S------------- 129 (265)
T ss_pred -------------------hhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeec----C-------------
Confidence 0111112233566677777776776666666666666666653 1
Q ss_pred cccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCCCC
Q psy5665 204 DFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYH 283 (344)
Q Consensus 204 ~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg~~ 283 (344)
.+++.+|+||++|..+||+ ++++.++++..++. .+..+++++.|+|||+|+
T Consensus 130 --------------------------~~e~~iFtGDtlf~~GcG~--~FEgt~~~M~~sl~-~l~~L~~~t~iypGHeYt 180 (265)
T KOG0813|consen 130 --------------------------TGERAIFTGDTLFGAGCGR--FFEGTAEQMDSSLN-ELIALPDDTRIYPGHEYT 180 (265)
T ss_pred --------------------------CCCCeEEeCCceeecCccc--hhcCCHHHHHHhHH-HhhcCCCCceEccCcccc
Confidence 1267899999999888885 47788888888885 599999998899999977
Q ss_pred CC---------------------------------ccccHHHHHHcCCCCCCCCCHHHHHHHh
Q psy5665 284 GF---------------------------------SHSTVGEEKLYNPRLGEQISEEKFVEIM 313 (344)
Q Consensus 284 ~~---------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 313 (344)
.. .++++++++.+|++++- ..+.+-++.
T Consensus 181 ~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~--~~~~v~k~~ 241 (265)
T KOG0813|consen 181 KSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRL--KKEKVQKAL 241 (265)
T ss_pred cccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhc--chHhhhhhh
Confidence 52 24677777778887776 334444343
No 8
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=160.60 Aligned_cols=183 Identities=30% Similarity=0.458 Sum_probs=107.4
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCC--hHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe-eccccccccccch
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQ--ADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV-INTHVHADHITGT 127 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~--~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~-v~~~~~~d~~~~~ 127 (344)
..++++++..++ ++.+|||||... .+.+.+.+++.+.+|++|++||.|.||+||+..|.+... ..+..+... .
T Consensus 23 ~~~~~~~~~~~~-~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~---~ 98 (252)
T COG0491 23 SGNSVYLLVDGE-GGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEV---P 98 (252)
T ss_pred ccccEEEEEcCC-CceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchh---h
Confidence 445666666642 379999999764 477888888888899999999999999999988887653 222111111 0
Q ss_pred hHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCccccC
Q psy5665 128 GKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQ 207 (344)
Q Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~~ 207 (344)
....... .............+...+ ..... .|+ .+.+
T Consensus 99 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~---~~~~~------~~~----------~~~~ 135 (252)
T COG0491 99 LLLREEI------------------------LRKAGVTAEAYAAPGASP---LRALE------DGD----------ELDL 135 (252)
T ss_pred hhhhccc------------------------ccccccccccCCCCcccc---ceecC------CCC----------EEEe
Confidence 0000000 000000000001110000 00000 111 1333
Q ss_pred CCCCceeecCCCCCCCceeeeecCcceeEecceeeccC--cccccCCCCCHHHHHHHHHHHHhcCCCc-eEEeeCCC
Q psy5665 208 GGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRG--CGRTDFQQGDSHKLFQSVRKEIFSLPDH-FRVYPAHD 281 (344)
Q Consensus 208 ~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~--~~~~~~~~~~~~~~~~sl~~~l~~l~~~-~~v~pgHg 281 (344)
++..++++.|||||+||++|+.++++++|+||+++... .+.......+...++++++ ++.....+ ..++||||
T Consensus 136 ~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~v~pgHg 211 (252)
T COG0491 136 GGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRLDLPGGDAAQLLASLR-RLLLLLLPDTLVLPGHG 211 (252)
T ss_pred cCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccccCCCCCHHHHHHHHH-HHHhccCCCCEEECCCC
Confidence 44567777777888888888877777899999888764 3334333444788889995 55554443 45999999
No 9
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.81 E-value=7.6e-19 Score=166.52 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=92.0
Q ss_pred CcceEEEEEEeCCCCeEEEEeCCC-CChHHHHHHHHHc-CC-cccEEEecCCchhhhcChhhhhhhh-eecccccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPVL-EQADRDVTLINQL-GL-TLKYVINTHVHADHITGTGKIKTMY-VINTHVHADHIT 125 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG~-~~~~~~~~~l~~~-~~-~i~~Vi~TH~H~DH~gg~~~~~~~~-~v~~~~~~d~~~ 125 (344)
+...|||+|.+ ++.+|||||. ...+.+++.+++. +. +|++|++||.|.||+||+..+.+.+ .+.++++...
T Consensus 30 g~~~NsyLI~~---~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~-- 104 (394)
T PRK11921 30 GSSYNSYLIKD---EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTKNG-- 104 (394)
T ss_pred ceEEEEEEEeC---CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHH--
Confidence 45679999975 4589999994 3456777777763 44 5999999999999999999887764 3444444332
Q ss_pred chhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCC-CCCCceEEEeCCCceeeecceee
Q psy5665 126 GTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPG-HTDGCVTYVNQGEGMAFTGDTLL 196 (344)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-ht~~~~~~~~~~~~iL~~GD~~~ 196 (344)
...+...+ . .......+.+++.+++|+..++++++|+ |+|++++++.++.++||+||+..
T Consensus 105 -~~~l~~~~-------~---~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~~~vLFsgD~fG 165 (394)
T PRK11921 105 -AKSLKGHY-------H---QDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLTGDNILFSNDAFG 165 (394)
T ss_pred -HHHHHHHh-------C---CCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEcCCCEEEecCccc
Confidence 11111110 0 0112345677888888888888888887 88888888888878888888643
No 10
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.80 E-value=1.1e-18 Score=147.93 Aligned_cols=179 Identities=19% Similarity=0.217 Sum_probs=103.5
Q ss_pred CcceEEEEEEeCCCCeEEEEeCCCCChHHHHH---HHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPVLEQADRDVT---LINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITG 126 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~---~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~ 126 (344)
...+|||+|+++ ++.+|||||......... .....+.+|++||+||.|.||+||+..|.+...............
T Consensus 3 ~~~~n~~li~~~--~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~ 80 (194)
T PF00753_consen 3 EGGSNSYLIEGG--DGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSADAAK 80 (194)
T ss_dssp SEEEEEEEEEET--TEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHHHHH
T ss_pred CeeEEEEEEEEC--CEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeeccccccc
Confidence 466899999986 889999999763333222 233346679999999999999999999999876554443322111
Q ss_pred hhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceeeeccCCCcccc
Q psy5665 127 TGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQ 206 (344)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~ 206 (344)
....... ..........................+.........++|++.++.++.++.+
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 139 (194)
T PF00753_consen 81 AIRPPDR--DSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGK------------------- 139 (194)
T ss_dssp HHHHHHH--HHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTT-------------------
T ss_pred ccccccc--ccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCc-------------------
Confidence 1111100 0000000000011111222233333444555555666666666666666544
Q ss_pred CCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccC----------CCCCHHHHHHHHHHHHhcCCCceEE
Q psy5665 207 QGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF----------QQGDSHKLFQSVRKEIFSLPDHFRV 276 (344)
Q Consensus 207 ~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~----------~~~~~~~~~~sl~~~l~~l~~~~~v 276 (344)
++|+||+++......... ...+...+.+++ +++..++++. +
T Consensus 140 ---------------------------vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~-i 190 (194)
T PF00753_consen 140 ---------------------------VLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEESIEAL-RRLEALDPEV-I 190 (194)
T ss_dssp ---------------------------EEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHHHHHHH-HHHHTSTTSE-E
T ss_pred ---------------------------EEEeeeEeccCCccccccccccccccccCcHHHHHHHHHH-HHHHCCCCCE-E
Confidence 555555444333333222 234567777788 6999999998 9
Q ss_pred eeCC
Q psy5665 277 YPAH 280 (344)
Q Consensus 277 ~pgH 280 (344)
+|||
T Consensus 191 i~gH 194 (194)
T PF00753_consen 191 IPGH 194 (194)
T ss_dssp EESS
T ss_pred EeCc
Confidence 9999
No 11
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.79 E-value=1.3e-18 Score=167.82 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=93.7
Q ss_pred CcceEEEEEEeCCCCeEEEEeCCC-CChHHHHHHHHHc-CC-cccEEEecCCchhhhcChhhhhhhh-eecccccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPVL-EQADRDVTLINQL-GL-TLKYVINTHVHADHITGTGKIKTMY-VINTHVHADHIT 125 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG~-~~~~~~~~~l~~~-~~-~i~~Vi~TH~H~DH~gg~~~~~~~~-~v~~~~~~d~~~ 125 (344)
+...|||+|.+ ++.+|||||. ...+.+++.+++. +. +|++|++||.|.||+||+..+.+.+ .+.++.+...
T Consensus 32 G~t~NsYLI~~---~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~-- 106 (479)
T PRK05452 32 GSSYNSYLIRE---EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTANA-- 106 (479)
T ss_pred CcEEEEEEEEC---CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECHHH--
Confidence 35679999985 4589999994 3456777777653 43 6999999999999999999888764 4445544332
Q ss_pred chhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCC-eeEEEEeCCC-CCCCceEEEeCCCceeeecceee
Q psy5665 126 GTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGD-QQLEVRATPG-HTDGCVTYVNQGEGMAFTGDTLL 196 (344)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~~~~~pg-ht~~~~~~~~~~~~iL~~GD~~~ 196 (344)
...+...+. ........+.+++.+.+|+ ..++++++|+ |+|++++++.++.++||+||...
T Consensus 107 -~~~l~~~~~---------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~~~vLFsgD~fG 169 (479)
T PRK05452 107 -IDSINGHHH---------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFG 169 (479)
T ss_pred -HHHHHHhhc---------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEcCCCEEEeccccc
Confidence 111111100 0011234577889999984 7899999996 99999999999888888888643
No 12
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.75 E-value=7e-17 Score=136.49 Aligned_cols=138 Identities=23% Similarity=0.373 Sum_probs=81.4
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCC-cccEEEecCCchhhhcChhhhhhhheeccccccccccchhH
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGL-TLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGK 129 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~-~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~ 129 (344)
..+||++|..+ ++.+|||+|.+......+.+++.+. ++++|++||.|.||++|+..+.....+.++.+... ...
T Consensus 4 ~~~~~~li~~~--~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~~~~i~~~~~~---~~~ 78 (183)
T smart00849 4 VGVNSYLVEGD--GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAPGAPVYAPEGT---AEL 78 (183)
T ss_pred cceeEEEEEeC--CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCCCCcEEEchhh---hHH
Confidence 45799999986 6799999996544466666777653 69999999999999999988877644444443332 111
Q ss_pred HHhhhhhhHHhhhc-ccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecce
Q psy5665 130 IKTMVNNVQSIISK-ESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDT 194 (344)
Q Consensus 130 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~ 194 (344)
+.... ........ .........+..++.+.+++..++++++++|+++++++++++.+++|+||+
T Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~ 143 (183)
T smart00849 79 LKDLL-KLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDL 143 (183)
T ss_pred Hhccc-hhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCe
Confidence 11110 00000000 000112233455566666666666666666666666666655444444443
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.71 E-value=1.5e-16 Score=145.78 Aligned_cols=130 Identities=17% Similarity=0.230 Sum_probs=95.1
Q ss_pred CcceEEEEEEeCCCCeEEEEeCC-CCChHHHHHHHHHc-CC-cccEEEecCCchhhhcChhhhhhhh-eecccccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPV-LEQADRDVTLINQL-GL-TLKYVINTHVHADHITGTGKIKTMY-VINTHVHADHIT 125 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG-~~~~~~~~~~l~~~-~~-~i~~Vi~TH~H~DH~gg~~~~~~~~-~v~~~~~~d~~~ 125 (344)
+...|+|||.+ ++.+||||+ ....+.+++.+++. +. +|++||++|..+||+|.++.+.+.+ .+.+.++...
T Consensus 33 GttyNSYLI~~---~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~-- 107 (388)
T COG0426 33 GTTYNSYLIVG---DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSKLA-- 107 (388)
T ss_pred CceeeeEEEeC---CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHH--
Confidence 56679999994 678999998 55668888888875 43 4999999999999999977777543 2222211111
Q ss_pred chhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCC-CCCCceEEEeCCCceeeeccee
Q psy5665 126 GTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPG-HTDGCVTYVNQGEGMAFTGDTL 195 (344)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-ht~~~~~~~~~~~~iL~~GD~~ 195 (344)
...+.. +..... ....++.|+++++|+.+++++.+|- |.|++++.+.+.+++||++|..
T Consensus 108 -~~~L~~-------~~~~~~---~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd~~~kILFS~D~f 167 (388)
T COG0426 108 -ARFLKG-------FYHDPE---WFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYDPEDKILFSCDAF 167 (388)
T ss_pred -HHHHHH-------hcCCcc---ceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEeecCCcEEEccccc
Confidence 111111 111110 1456788999999999999999975 9999999999999999999973
No 14
>PRK11539 ComEC family competence protein; Provisional
Probab=99.47 E-value=2.6e-12 Score=131.12 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=67.7
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCC------ChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLE------QADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHI 124 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~------~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~ 124 (344)
+++.+.+|+++ ++++|||||.. ..+.+..+|++.|+++|++++||.|.||+||+..+.+.+.+.
T Consensus 509 GqG~a~li~~~--~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~-------- 578 (755)
T PRK11539 509 GHGLAVVIERN--GKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMA-------- 578 (755)
T ss_pred cCceEEEEEEC--CEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcc--------
Confidence 33578888874 78999999942 125677899999999999999999999999977776653211
Q ss_pred cchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCC
Q psy5665 125 TGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGH 174 (344)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgh 174 (344)
..+.+.. .........|+.+++++.++++++.+++
T Consensus 579 -------------~i~~~~~--~~~~~~~~~g~~~~~~~~~~~vL~P~~~ 613 (755)
T PRK11539 579 -------------WIRSPLN--WANHLPCVRGEQWQWQGLTFSVHWPLEQ 613 (755)
T ss_pred -------------eeeccCc--ccCcccccCCCeEeECCEEEEEEecCcc
Confidence 1111100 0001123457788888888888877654
No 15
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.45 E-value=1.2e-12 Score=125.58 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=94.3
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCCh-HHH---------HHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe-ecccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQA-DRD---------VTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV-INTHV 119 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~-~~~---------~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~-v~~~~ 119 (344)
.+.|||+++.+ +..+|||+|.... ..+ .+++++...++++|++||.|.||+||++.+..... ..+++
T Consensus 12 iG~n~~ll~~~--~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~Vy~ 89 (422)
T TIGR00649 12 IGKNMYVVEID--DDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPPIYG 89 (422)
T ss_pred cCCeEEEEEEC--CeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCeEEe
Confidence 37899999975 7799999995321 111 34566666679999999999999999999887653 34555
Q ss_pred ccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeC-CeeEEEEeCCCCCCCceEEEeC--CCceeeecceee
Q psy5665 120 HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFG-DQQLEVRATPGHTDGCVTYVNQ--GEGMAFTGDTLL 196 (344)
Q Consensus 120 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~~~~~pght~~~~~~~~~--~~~iL~~GD~~~ 196 (344)
+... ...+...+.. ...........+..++.+++| +..++++.+++|.|+++++.+. +.+++|+||...
T Consensus 90 ~~~t---~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~ 161 (422)
T TIGR00649 90 TPLT---IALIKSKIKE-----NKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKF 161 (422)
T ss_pred CHHH---HHHHHHHHHh-----cCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCC
Confidence 5443 1222221110 000011223557778899997 4899999999999999988774 567999999855
No 16
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.43 E-value=2.6e-12 Score=104.45 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=94.1
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccchhHH
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l 130 (344)
..-|+++...+ ++.|||||-+- .....+.+++.| .+++|++||. ||+-.+..+++.+.+.++.|.....
T Consensus 21 ~dfng~~~~~p--~GnilIDP~~l-s~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~~~~a~i~~p~~d~~----- 89 (199)
T PF14597_consen 21 LDFNGHAWRRP--EGNILIDPPPL-SAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAEQTGAKIYGPAADAA----- 89 (199)
T ss_dssp EEEEEEEE--T--T--EEES------HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHHHS--EEEEEGGGCC-----
T ss_pred cCceeEEEEcC--CCCEEecCccc-cHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHHHhCCeeeccHHHHh-----
Confidence 33478888887 66899999854 456667787765 5899999987 9999999999888888887766521
Q ss_pred HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCC-CCCCceEEEeCCCceeeecceeeeccCCCccccCCC
Q psy5665 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPG-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGG 209 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-ht~~~~~~~~~~~~iL~~GD~~~~~~~~~~~~~~~~ 209 (344)
.+ +..++.++.+|+.+ .++ +.++..+| ||||.++++.++ .+|++||.+..
T Consensus 90 --~~-----------p~~~D~~l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~------------ 140 (199)
T PF14597_consen 90 --QF-----------PLACDRWLADGEEI-VPG--LWVIHLPGSKTPGELALLLED-RVLITGDLLRS------------ 140 (199)
T ss_dssp --C------------SS--SEEE-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEB------------
T ss_pred --hC-----------CCCCccccccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-ceEEecceeee------------
Confidence 11 12367788888855 444 88899999 899999999876 46666665431
Q ss_pred CCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcC-CCceEEeeCCC
Q psy5665 210 SGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSL-PDHFRVYPAHD 281 (344)
Q Consensus 210 ~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l-~~~~~v~pgHg 281 (344)
|-+|+++++ .|. .-.+..+..+|+ .+|..+ +-+. +++|||
T Consensus 141 ----------~~~g~l~lL---------pd~-----------k~~d~~~a~~sl-~RLa~~~~fe~-lLvGdG 181 (199)
T PF14597_consen 141 ----------HPAGSLSLL---------PDE-----------KLYDPTEARASL-RRLAAYPDFEW-LLVGDG 181 (199)
T ss_dssp ----------SSTTS-EE-----------GG-----------G-S-HHHHHHHH-HHHHT-TT--E-EEESBB
T ss_pred ----------cCCCCeEEC---------ChH-----------HcCCHHHHHHHH-HHHhccccccE-EeecCC
Confidence 112222221 111 124688889999 599999 4776 999999
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.40 E-value=1.5e-11 Score=124.06 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=69.0
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCC------hHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQ------ADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHI 124 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~------~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~ 124 (344)
+++.+.+|+++ ++.+|||||... ...+..+|++.|+++|++++||.|.||+||+..+.+.+.+........
T Consensus 448 GqGdaili~~~--~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~~~~- 524 (662)
T TIGR00361 448 GQGLAMFIGAN--GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVIPKG- 524 (662)
T ss_pred CCceEEEEEEC--CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEeccc-
Confidence 44578899886 579999999531 245778999999999999999999999999888877653321111000
Q ss_pred cchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeC
Q psy5665 125 TGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT 171 (344)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~ 171 (344)
. . ...........|+.+++++..+++++.
T Consensus 525 ------~-~-----------~~~~~~~~~~~G~~~~~~~~~~~vL~P 553 (662)
T TIGR00361 525 ------F-V-----------EEGVAIEECKRGDVWQWQGLQFHVLSP 553 (662)
T ss_pred ------h-h-----------hCCCceEecCCCCEEeECCEEEEEECC
Confidence 0 0 001122346678888888888888764
No 18
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.32 E-value=4.1e-11 Score=107.59 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=114.3
Q ss_pred EEEEecCcceEEEEEEeCCCCeEEEEeCCC-CChHHHHHHHHHcCCc-ccEEEecCCchhhhcChhhhhhhheecccccc
Q psy5665 44 RQLFDSISYTHTYILADKLSKECVIIDPVL-EQADRDVTLINQLGLT-LKYVINTHVHADHITGTGKIKTMYVINTHVHA 121 (344)
Q Consensus 44 ~~~~~~~~~~~~~li~~~~~~~~iLIDtG~-~~~~~~~~~l~~~~~~-i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~ 121 (344)
...+...++..+.+|+.+ +..+++|||. ...+.++.+|+++|++ |+.+|+||.|.||+||++.+.+.+.+...--.
T Consensus 45 ~~~~lDvGqg~a~li~~~--~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~ 122 (293)
T COG2333 45 KVHMLDVGQGLATLIRSE--GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIY 122 (293)
T ss_pred eEEEEEcCCCeEEEEeeC--CceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEe
Confidence 344445566678888886 5599999996 3357888999999998 99999999999999998888775422211100
Q ss_pred ccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCC-----CCCceEEEeCCCceeeecceee
Q psy5665 122 DHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGH-----TDGCVTYVNQGEGMAFTGDTLL 196 (344)
Q Consensus 122 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgh-----t~~~~~~~~~~~~iL~~GD~~~ 196 (344)
.......... .............|+.+.+++..+++...++. ...++++.+..
T Consensus 123 ~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~----------- 180 (293)
T COG2333 123 AGSDSTSTFV-----------LRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF----------- 180 (293)
T ss_pred CCCCccchhh-----------hhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe-----------
Confidence 0000000000 01112234556678999999999998876543 22344444432
Q ss_pred eccCCCccccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEE
Q psy5665 197 IRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRV 276 (344)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v 276 (344)
....+||+||. +. ..+ +.+.+.-..+..+++.
T Consensus 181 ---------------------------------g~~s~LlTGD~------------e~-~~E--~~l~~~~~~l~~dVLk 212 (293)
T COG2333 181 ---------------------------------GGNSFLLTGDL------------EE-KGE--KLLKKYGPDLRADVLK 212 (293)
T ss_pred ---------------------------------CCeeEEEecCC------------Cc-hhH--HHHHhhCCCccceEEE
Confidence 12467888885 11 122 3333344457788888
Q ss_pred eeCCCCCCCccccHHHHHHcCCCC
Q psy5665 277 YPAHDYHGFSHSTVGEEKLYNPRL 300 (344)
Q Consensus 277 ~pgHg~~~~~~~~~~~~~~~~~~l 300 (344)
+++||. ...++.....+.+|.+
T Consensus 213 V~HHGS--~tSss~~Fl~~v~Pk~ 234 (293)
T COG2333 213 VGHHGS--KTSSSLAFLEAVKPKV 234 (293)
T ss_pred eccCCc--cccCcHHHHHhcCCcE
Confidence 999993 2356666677777755
No 19
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.12 E-value=6.7e-10 Score=96.09 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=57.8
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCc---ccEEEecCCchhhhcChhhhhhhh--eeccccccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMY--VINTHVHADHI 124 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~---i~~Vi~TH~H~DH~gg~~~~~~~~--~v~~~~~~d~~ 124 (344)
..+-|++|+++ ...+|+|||.. ...++..++.+|++ +++|++||.|+||+||+.++.+.. .+.+++|++.+
T Consensus 20 ~hGfS~LVE~~--~~riLFDtG~~-~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af 95 (259)
T COG1237 20 EHGFSALVEDE--GTRILFDTGTD-SDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAF 95 (259)
T ss_pred cCceEEEEEcC--CeEEEEeCCCC-cHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHH
Confidence 34578999986 57999999954 57888889988875 999999999999999999987754 55577777654
No 20
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.06 E-value=2.2e-09 Score=106.88 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=81.0
Q ss_pred CcceEEEEEEeCCCCeEEEEeCCCCCh---HHHHHHHHHcC---CcccEEEecCCchhhhcChhhhhhh-heeccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPVLEQA---DRDVTLINQLG---LTLKYVINTHVHADHITGTGKIKTM-YVINTHVHAD 122 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG~~~~---~~~~~~l~~~~---~~i~~Vi~TH~H~DH~gg~~~~~~~-~~v~~~~~~d 122 (344)
..+.+||+|.++ +..+|||||.... ......+...+ .+|++|++||+|.||+|+++.+... +...++++..
T Consensus 185 eVG~Sc~Ll~~~--~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~T~p 262 (630)
T TIGR03675 185 EVGRSALLLSTP--ESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYCTPP 262 (630)
T ss_pred ccCCCEEEEEEC--CCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceeecHH
Confidence 345699999986 6689999995422 11122222222 2499999999999999999998753 3344555443
Q ss_pred cccchhHHHhhhhhhHHhhhccc--c----------cccceEccCCCeeEeC-CeeEEEEeCCCCCCCceEEEeC--C--
Q psy5665 123 HITGTGKIKTMVNNVQSIISKES--G----------AQADIHVTHGDTIDFG-DQQLEVRATPGHTDGCVTYVNQ--G-- 185 (344)
Q Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~g-~~~i~~~~~pght~~~~~~~~~--~-- 185 (344)
...-...+.. +......... . ......+..++.++++ +..++++. .||++|+..+.+. +
T Consensus 263 T~~l~~~ll~---D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~-AGHilGsa~~~~~i~dg~ 338 (630)
T TIGR03675 263 TRDLMTLLQL---DYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYN-AGHILGSAIAHLHIGDGL 338 (630)
T ss_pred HHHHHHHHHH---HHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEec-CccccCceEEEEEECCCC
Confidence 2110111111 0000000000 0 0112345567777774 56666554 4999999876543 3
Q ss_pred Cceeeecceee
Q psy5665 186 EGMAFTGDTLL 196 (344)
Q Consensus 186 ~~iL~~GD~~~ 196 (344)
.+++|+||.-.
T Consensus 339 ~~IvYTGD~~~ 349 (630)
T TIGR03675 339 YNIVYTGDFKY 349 (630)
T ss_pred EEEEEeCCCCC
Confidence 37999999643
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.99 E-value=2.3e-09 Score=104.08 Aligned_cols=139 Identities=18% Similarity=0.206 Sum_probs=97.6
Q ss_pred cCcceEEEEEEeCCCCeEEEEeCCC--CCh-----H---HHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe-ecc
Q psy5665 49 SISYTHTYILADKLSKECVIIDPVL--EQA-----D---RDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV-INT 117 (344)
Q Consensus 49 ~~~~~~~~li~~~~~~~~iLIDtG~--~~~-----~---~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~-v~~ 117 (344)
+..+.|+|+++.. ++.+++|+|. +.. + ....++.+...+|++||+||.|.||+|+++++..... +++
T Consensus 18 ~EiGkN~~vve~~--~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~pi 95 (555)
T COG0595 18 GEIGKNMYVVEYG--DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFAPI 95 (555)
T ss_pred hhhccceEEEEEC--CcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcCce
Confidence 3356899999986 7799999993 211 1 1224567766689999999999999999999998765 666
Q ss_pred ccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeC--CCceeeeccee
Q psy5665 118 HVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQ--GEGMAFTGDTL 195 (344)
Q Consensus 118 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~--~~~iL~~GD~~ 195 (344)
++.+-. ...++...... ...........++.+..++++++.++++.+..-.|+++.+.+. ...|+++||--
T Consensus 96 y~s~lt---~~Li~~k~~~~----~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk 168 (555)
T COG0595 96 YASPLT---AALIKEKLKEH----GLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFK 168 (555)
T ss_pred ecCHhh---HHHHHHHHHHh----ccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEE
Confidence 644322 22222221100 0011123456788889999999999999999889999888776 45699999965
Q ss_pred e
Q psy5665 196 L 196 (344)
Q Consensus 196 ~ 196 (344)
+
T Consensus 169 ~ 169 (555)
T COG0595 169 F 169 (555)
T ss_pred e
Confidence 4
No 22
>PRK04286 hypothetical protein; Provisional
Probab=98.99 E-value=7.5e-09 Score=94.50 Aligned_cols=141 Identities=17% Similarity=0.188 Sum_probs=75.9
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCCCh-------------HHHHHHHHH---cCCcccEEEecCCchhhhcChhhhh-----
Q psy5665 52 YTHTYILADKLSKECVIIDPVLEQA-------------DRDVTLINQ---LGLTLKYVINTHVHADHITGTGKIK----- 110 (344)
Q Consensus 52 ~~~~~li~~~~~~~~iLIDtG~~~~-------------~~~~~~l~~---~~~~i~~Vi~TH~H~DH~gg~~~~~----- 110 (344)
.+||++|.++ +..+|||+|.... +.+.+.+.+ .-.++++||+||.|.||++|...+.
T Consensus 14 ~~~~~~I~~~--~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~ 91 (298)
T PRK04286 14 RSMATFVETK--DVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSD 91 (298)
T ss_pred eeeEEEEEEC--CeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccccccc
Confidence 3599999986 7799999994310 333333333 2335999999999999998866541
Q ss_pred hhheeccccccccccchh-H-H--HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCC--ceEEE--
Q psy5665 111 TMYVINTHVHADHITGTG-K-I--KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDG--CVTYV-- 182 (344)
Q Consensus 111 ~~~~v~~~~~~d~~~~~~-~-l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~--~~~~~-- 182 (344)
..+.+.++.......... . + ...+ ....+............+..++.+.+|+..+++.....|... .+.+.
T Consensus 92 ~~~~i~iy~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~ 170 (298)
T PRK04286 92 EEIPKEIYKGKIVLIKDPTENINWSQRR-RAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIM 170 (298)
T ss_pred ccchHHHhcCceecccCHHHHcCHHHHh-hHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEE
Confidence 122233333322211100 0 0 0000 000111111111123445667889999988886643345432 33322
Q ss_pred ----eCCCceeeeccee
Q psy5665 183 ----NQGEGMAFTGDTL 195 (344)
Q Consensus 183 ----~~~~~iL~~GD~~ 195 (344)
..+.+++|+||+.
T Consensus 171 ~ri~~gg~~~~~~gDt~ 187 (298)
T PRK04286 171 VRISDGDESFVFASDVQ 187 (298)
T ss_pred EEEEeCCEEEEEECCCC
Confidence 2345799999984
No 23
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.95 E-value=4.9e-09 Score=93.50 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=77.1
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhh--heeccccccccccchh
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTM--YVINTHVHADHITGTG 128 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~--~~v~~~~~~d~~~~~~ 128 (344)
....|++|..+ +..+|||+|... +.+.+ ...++++|++||.|.||++|+..+... ..+.++......
T Consensus 35 r~~~s~li~~~--~~~iLiD~G~~~---~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~---- 103 (250)
T PRK11244 35 RRPCSALIEFN--GARTLIDAGLPD---LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPE---- 103 (250)
T ss_pred cceeEEEEEEC--CCEEEEECCChH---HhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchh----
Confidence 34578888875 568999999531 11111 123599999999999999998766432 223333332210
Q ss_pred HHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeC--CCceeeeccee
Q psy5665 129 KIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQ--GEGMAFTGDTL 195 (344)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~--~~~iL~~GD~~ 195 (344)
.+...+. ..........+..++.+++++..+..+.+ .|+..++.+.+. +.+++|+||+.
T Consensus 104 ~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~~~~~i~ysgDt~ 164 (250)
T PRK11244 104 GCDDLFK-------HPGILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLETAHSRVAYLTDTV 164 (250)
T ss_pred hHHHHhc-------CccccccccccCCCCCeeECCEEEEEEee-CCCcceeEEEEecCCeEEEEEcCCC
Confidence 0111100 00000111235677889999988887777 477778888775 34799999984
No 24
>PRK02113 putative hydrolase; Provisional
Probab=98.92 E-value=9.4e-09 Score=91.79 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=76.9
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCC-cccEEEecCCchhhhcChhhhhhh---heeccccccccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGL-TLKYVINTHVHADHITGTGKIKTM---YVINTHVHADHITG 126 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~-~i~~Vi~TH~H~DH~gg~~~~~~~---~~v~~~~~~d~~~~ 126 (344)
-.+.|++|+.+ +..+|||+|.+...+ +.+.+. ++++|++||.|.||++|+..+... ..+.+++....
T Consensus 33 R~~~s~li~~~--~~~iLiD~G~g~~~~----l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~--- 103 (252)
T PRK02113 33 RLRTSALVETE--GARILIDCGPDFREQ----MLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYV--- 103 (252)
T ss_pred ceeeEEEEEEC--CeEEEEECCchHHHH----HHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHH---
Confidence 34588999875 678999999763332 222343 599999999999999999877532 12223322211
Q ss_pred hhHHHhhhhhhHHhhhccccc----ccceEccCCCeeEeCCeeEEEEeCCCCC-CCceEEEeCCCceeeeccee
Q psy5665 127 TGKIKTMVNNVQSIISKESGA----QADIHVTHGDTIDFGDQQLEVRATPGHT-DGCVTYVNQGEGMAFTGDTL 195 (344)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~i~~~~~pght-~~~~~~~~~~~~iL~~GD~~ 195 (344)
...+....+ ......... .....+..++.+++++..++.+.+. |. .....+.+ .+++|+||+.
T Consensus 104 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~ 171 (252)
T PRK02113 104 AERLRSRMP---YCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDML 171 (252)
T ss_pred HHHHHhhCC---eeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCC
Confidence 111111110 000000000 1123456678899999888888775 43 33566666 5789999973
No 25
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.92 E-value=1.8e-08 Score=92.26 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=70.4
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCC---cccEEEecCCchhhhcChhhhhhhh-------eeccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGL---TLKYVINTHVHADHITGTGKIKTMY-------VINTHVH 120 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~---~i~~Vi~TH~H~DH~gg~~~~~~~~-------~v~~~~~ 120 (344)
..++|++|..+ +..+|||+|.+ ....+.+.+. ++++|++||.|.||++|+..+.... .+.++..
T Consensus 16 r~~~~~~v~~~--~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p 89 (299)
T TIGR02651 16 RNLPSIALKLN--GELWLFDCGEG----TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGP 89 (299)
T ss_pred CCCceEEEEEC--CeEEEEECCHH----HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECC
Confidence 34688999875 66899999965 2334444443 3899999999999999999876532 2333433
Q ss_pred cccccchhHHHhhhhhhHHhhhcccccccceEccCCC-eeEeCCeeEEEEeCCCCCCCceEEEeC
Q psy5665 121 ADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGD-TIDFGDQQLEVRATPGHTDGCVTYVNQ 184 (344)
Q Consensus 121 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~i~~~~~pght~~~~~~~~~ 184 (344)
... ...+..... ..............+.+++ .+..++..++.+.+. |...++.+.+.
T Consensus 90 ~~~---~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 90 PGI---KEFIETSLR---VSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred ccH---HHHHHHHHH---HcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 221 111111110 0000000011123355565 577888888877775 55556666654
No 26
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.91 E-value=7.6e-09 Score=94.66 Aligned_cols=138 Identities=9% Similarity=0.099 Sum_probs=80.3
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHHH--HHH-cCC---cccEEEecCCchhhhcChhhhhhhheeccccccccc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVTL--INQ-LGL---TLKYVINTHVHADHITGTGKIKTMYVINTHVHADHI 124 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~--l~~-~~~---~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~ 124 (344)
..+.|++|... ++..+|||+|.+...++.+. +.. .|. ++++|++||.|+||+.|+..|.....+.+|.....
T Consensus 37 R~~ss~li~~~-g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~~l~Vyg~~~~- 114 (302)
T PRK05184 37 RTQSSIAVSAD-GEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQPFPVYATPAV- 114 (302)
T ss_pred ccccEEEEEcC-CCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCCCeEEEeCHHH-
Confidence 33578888754 33579999997644443332 111 122 49999999999999999999876556666655442
Q ss_pred cchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeC---CeeEEEEeCCC------------CCCCceEEEeC---C-
Q psy5665 125 TGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFG---DQQLEVRATPG------------HTDGCVTYVNQ---G- 185 (344)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~i~~~~~pg------------ht~~~~~~~~~---~- 185 (344)
...+...++.... .... .......+..++.++++ +.+++.+.++. |...++.+.+. +
T Consensus 115 --~~~l~~~~~~f~~-~~~~-~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g 190 (302)
T PRK05184 115 --LEDLSTGFPIFNV-LDHY-GGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATG 190 (302)
T ss_pred --HHHHHhcCCcccc-cccc-cceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCC
Confidence 2222222111100 0000 00112345556677776 67788877751 44557777772 2
Q ss_pred Cceeeecce
Q psy5665 186 EGMAFTGDT 194 (344)
Q Consensus 186 ~~iL~~GD~ 194 (344)
.+++|+.|.
T Consensus 191 ~~~~y~tD~ 199 (302)
T PRK05184 191 KRLFYAPGL 199 (302)
T ss_pred cEEEEECCC
Confidence 358888665
No 27
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.91 E-value=9e-09 Score=95.44 Aligned_cols=218 Identities=15% Similarity=0.176 Sum_probs=114.8
Q ss_pred EEEEEecCcceEEEEEEeCCCCeEEEEeCCCC--ChHHHHHHHH-HcC-CcccEEEecCCchhhhcChhhhhhhhee---
Q psy5665 43 FRQLFDSISYTHTYILADKLSKECVIIDPVLE--QADRDVTLIN-QLG-LTLKYVINTHVHADHITGTGKIKTMYVI--- 115 (344)
Q Consensus 43 ~~~~~~~~~~~~~~li~~~~~~~~iLIDtG~~--~~~~~~~~l~-~~~-~~i~~Vi~TH~H~DH~gg~~~~~~~~~v--- 115 (344)
++|+.+-..++-+| |+++ .+.|+|||-.. .++.-++... .++ .+|++||+||.|.||.||+.-+.....+
T Consensus 117 iYQVRG~DisNITf-veGd--tg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG 193 (655)
T COG2015 117 IYQVRGFDISNITF-VEGD--TGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG 193 (655)
T ss_pred eeEeecccccceEE-EcCC--cceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccC
Confidence 67777777665555 5544 56999999732 3344444443 344 5699999999999999998887765422
Q ss_pred --ccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecc
Q psy5665 116 --NTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGD 193 (344)
Q Consensus 116 --~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD 193 (344)
.+.+..-.+. ....+.--+...++.....+.-..+..|..=+++ .-+ --.-+.|.+.++.|...|--+|
T Consensus 194 kV~iiAP~GFme---~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~---~gi--Gk~la~G~vsLiaPT~~I~~~g- 264 (655)
T COG2015 194 KVQIIAPAGFME---EAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVG---CGI--GKTLATGEVSLIAPTKIIEETG- 264 (655)
T ss_pred ceeEecchhHHH---HHHHHhhhhhhhHhhhhhhhhccccCCCccCccc---ccc--ccccccCceeeecceEEeeccC-
Confidence 2222211100 0000000000111111001111111111100000 000 0011223344444432222233
Q ss_pred eeeeccCCCccccCCCCCceeecCCC-CCCCceeeeecCcceeEecceeeccCccccc-CCC---CCHHHHHHHHHHHHh
Q psy5665 194 TLLIRGCGRTDFQQGGSGVPVRATPG-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTD-FQQ---GDSHKLFQSVRKEIF 268 (344)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~pG-Ht~g~~~~~~~~~~~lf~GD~l~~~~~~~~~-~~~---~~~~~~~~sl~~~l~ 268 (344)
..+++++.++++..||| .+|..|-||.|..++|+.....-. ...+.. +.+ -|...|-+-+.+.+.
T Consensus 265 ---------E~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~-~lHNlytlRGa~vRD~~~Ws~ylneal~ 334 (655)
T COG2015 265 ---------ETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATH-TLHNLYTLRGAEVRDAKAWSKYLNEALD 334 (655)
T ss_pred ---------ceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccc-cceeeeecccceecchHHHHHHHHHHHH
Confidence 34667788999999999 899999999999998887654321 122211 122 367777777766666
Q ss_pred cC--CCceEEeeCCCCC
Q psy5665 269 SL--PDHFRVYPAHDYH 283 (344)
Q Consensus 269 ~l--~~~~~v~pgHg~~ 283 (344)
.. +.++ ++..|+-+
T Consensus 335 ~fg~~adV-mfa~H~WP 350 (655)
T COG2015 335 MFGDDADV-MFASHTWP 350 (655)
T ss_pred HhcccccE-EEeecCCC
Confidence 54 5666 78888843
No 28
>PRK02126 ribonuclease Z; Provisional
Probab=98.90 E-value=2e-08 Score=92.91 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=47.5
Q ss_pred EEecCcceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcC-CcccEEEecCCchhhhcChhhhhhhh
Q psy5665 46 LFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLG-LTLKYVINTHVHADHITGTGKIKTMY 113 (344)
Q Consensus 46 ~~~~~~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~-~~i~~Vi~TH~H~DH~gg~~~~~~~~ 113 (344)
+..+....|||++..+.++..+|||+|. +.+ +.+.+ .+|++|++||.|.||++|+..+....
T Consensus 9 ~~~g~~~dn~~~l~~~~~~~~iLiD~G~-----~~~-l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 9 LVNGPFDDPGLYVDFLFERRALLFDLGD-----LHH-LPPRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred EecCCCCCcEEEEEECCCCeEEEEcCCC-----HHH-HhhcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 4445566799999876567899999996 222 33334 56999999999999999999998653
No 29
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.89 E-value=2.7e-08 Score=91.30 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=68.8
Q ss_pred cceEEEEEEeCC--CCeEEEEeCCCCChHHHHHHHHHcCC---cccEEEecCCchhhhcChhhhhhhh-------eeccc
Q psy5665 51 SYTHTYILADKL--SKECVIIDPVLEQADRDVTLINQLGL---TLKYVINTHVHADHITGTGKIKTMY-------VINTH 118 (344)
Q Consensus 51 ~~~~~~li~~~~--~~~~iLIDtG~~~~~~~~~~l~~~~~---~i~~Vi~TH~H~DH~gg~~~~~~~~-------~v~~~ 118 (344)
...+||+|...+ .+..+|||+|.+.. ..+.+.++ +|++|++||.|.||++|+..|.... .+.++
T Consensus 15 r~~s~~lv~~~~~~~~~~iLiD~G~g~~----~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iy 90 (303)
T TIGR02649 15 RNVTAILLNLQHPTQSGLWLFDCGEGTQ----HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIY 90 (303)
T ss_pred CCccEEEEEccCCCCCCEEEEECCccHH----HHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEE
Confidence 446789997531 13589999997632 34444443 4999999999999999999875432 12233
Q ss_pred cccccccchhHHHhhhhhhHHhhhcccc-cccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeC
Q psy5665 119 VHADHITGTGKIKTMVNNVQSIISKESG-AQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQ 184 (344)
Q Consensus 119 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~ 184 (344)
.... ..+.......+...... ......+..+..+..++..++.+.+. |...++.+.+.
T Consensus 91 gp~~-------~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 91 GPQG-------IREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred echh-------HHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 3322 22111111111111110 11123345566677777677766664 55566777664
No 30
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.88 E-value=1.7e-08 Score=89.44 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=74.7
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhh--heeccccccccccchhH
Q psy5665 52 YTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTM--YVINTHVHADHITGTGK 129 (344)
Q Consensus 52 ~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~--~~v~~~~~~d~~~~~~~ 129 (344)
...|++|..+ +..+|||+|... +.+.+ ...+|++|++||.|.||++|+..+... ..+.++..... ..
T Consensus 26 ~~~s~~i~~~--~~~iliD~G~~~---~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~----~~ 94 (238)
T TIGR03307 26 QPCSAVIEFN--GARTLIDAGLTD---LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDE----EG 94 (238)
T ss_pred cceEEEEEEC--CcEEEEECCChh---Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchH----hh
Confidence 3467888775 568999999542 11111 123589999999999999998655332 12333332211 00
Q ss_pred HHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeC--CCceeeeccee
Q psy5665 130 IKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQ--GEGMAFTGDTL 195 (344)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~--~~~iL~~GD~~ 195 (344)
+.... ...........+..++.+.+++.+++.+.+. |..+++.+.+. +.+++|+||+.
T Consensus 95 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 95 CDDLF-------KHPGILDFSKPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred HHHHh-------cCcccccccccccCCceEEECCEEEEEEecC-CCCcceEEEEecCCcEEEEEecCC
Confidence 11110 0000001112355678888998888877664 77777877775 44799999974
No 31
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.86 E-value=1.4e-08 Score=92.75 Aligned_cols=132 Identities=11% Similarity=0.140 Sum_probs=79.2
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHc----CC---cccEEEecCCchhhhcChhhhhhhheecccccccccc
Q psy5665 53 THTYILADKLSKECVIIDPVLEQADRDVTLINQL----GL---TLKYVINTHVHADHITGTGKIKTMYVINTHVHADHIT 125 (344)
Q Consensus 53 ~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~----~~---~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~ 125 (344)
..|++|... ++..+|||+|++...++ ..+++. ++ .|++||+||.|.||+.|+..+.....+.+|+....
T Consensus 38 rss~ll~~~-g~~~iLID~Gpd~r~ql-~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~~lpVya~~~t-- 113 (302)
T TIGR02108 38 QSSIAVSAD-GERWVLLNASPDIRQQI-QATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQPFTLYATEMV-- 113 (302)
T ss_pred ccEEEEEeC-CCEEEEEECCHHHHHHH-HhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCCCceEEECHHH--
Confidence 467888653 35689999997522222 222222 33 39999999999999999999987777777777654
Q ss_pred chhHHHhhhhhhHHhhhccccccc-ceEccCCCeeEeC-----CeeEEEEeCCC-------C------CCCceEEEeCC-
Q psy5665 126 GTGKIKTMVNNVQSIISKESGAQA-DIHVTHGDTIDFG-----DQQLEVRATPG-------H------TDGCVTYVNQG- 185 (344)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-----~~~i~~~~~pg-------h------t~~~~~~~~~~- 185 (344)
...+.. ++....+ ..... ...+..++.+.++ +..++.+.++. | ..+.+.|.+..
T Consensus 114 -~~~L~~-~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~ 187 (302)
T TIGR02108 114 -LQDLSD-NPIFNVL----DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDG 187 (302)
T ss_pred -HHHHHh-CCCcccc----chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeC
Confidence 223322 2211110 00111 1233445555553 47777777761 3 23566777753
Q ss_pred ---Cceeeecce
Q psy5665 186 ---EGMAFTGDT 194 (344)
Q Consensus 186 ---~~iL~~GD~ 194 (344)
.+++|++|+
T Consensus 188 ~~g~~~~y~tD~ 199 (302)
T TIGR02108 188 TTGKRLFYIPGC 199 (302)
T ss_pred CCCcEEEEECCC
Confidence 358899996
No 32
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.82 E-value=1.9e-08 Score=88.43 Aligned_cols=124 Identities=19% Similarity=0.363 Sum_probs=72.7
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCC-ChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccchhHH
Q psy5665 52 YTHTYILADKLSKECVIIDPVLE-QADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130 (344)
Q Consensus 52 ~~~~~li~~~~~~~~iLIDtG~~-~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l 130 (344)
+++||+|+.+ +..+||||+.. .... .++....++++|++||.|.||+++...+.....+.++.... .
T Consensus 7 G~s~~li~~~--~~~iLiDP~~~~~~~~---~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~~~~v~~~~~-------~ 74 (228)
T PRK00685 7 GHSAFLIETG--GKKILIDPFITGNPLA---DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRTGATVIANAE-------L 74 (228)
T ss_pred cceEEEEEEC--CEEEEECCCCCCCCCC---CCChhcCcccEEEeCCCCccccccHHHHHHhCCCEEEEeHH-------H
Confidence 3589999975 77999998632 1110 11112337999999999999999977654433322222211 1
Q ss_pred HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCC------------ceEEEe--CCCceeeecceee
Q psy5665 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDG------------CVTYVN--QGEGMAFTGDTLL 196 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~------------~~~~~~--~~~~iL~~GD~~~ 196 (344)
... +... .......++.++.+++++.+++++++. |.+. ...+.+ ++.+++|+||+..
T Consensus 75 ~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~ 145 (228)
T PRK00685 75 ANY-------LSEK-GVEKTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGL 145 (228)
T ss_pred HHH-------HHhc-CCCceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccc
Confidence 111 1110 011234566778889998877766542 2221 244444 4568999999854
No 33
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2e-08 Score=95.99 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred CcceEEEEEEeCCCCeEEEEeCCCCChHHH--HHHHHHcCCcccEEEecCCchhhhcChhhhhhhh-eeccccccccccc
Q psy5665 50 ISYTHTYILADKLSKECVIIDPVLEQADRD--VTLINQLGLTLKYVINTHVHADHITGTGKIKTMY-VINTHVHADHITG 126 (344)
Q Consensus 50 ~~~~~~~li~~~~~~~~iLIDtG~~~~~~~--~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~-~v~~~~~~d~~~~ 126 (344)
..+..|.++... +..+++|+|....... ........ ++|++++||+|.||+|+++.+.... .-.+++......-
T Consensus 11 evg~s~~~l~~~--~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l 87 (427)
T COG1236 11 EVGRSCVLLETG--GTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAAL 87 (427)
T ss_pred CcCcEEEEEEEC--CceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCceeeccCHHHH
Confidence 356689999875 5799999995422221 11111112 5899999999999999999988742 1223333222111
Q ss_pred hhHHHhhhhhhHHhhh-----cc------cccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeC--CCceeeecc
Q psy5665 127 TGKIKTMVNNVQSIIS-----KE------SGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQ--GEGMAFTGD 193 (344)
Q Consensus 127 ~~~l~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~--~~~iL~~GD 193 (344)
...+.. +...... .. ........+.-++.+.++++.++++++ ||.+|+..+.+. +.+++|+||
T Consensus 88 ~~~~l~---d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~~~~~ilytGD 163 (427)
T COG1236 88 LKVLLG---DSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEVDGGRILYTGD 163 (427)
T ss_pred HHHHHH---HHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEeCCceEEEEec
Confidence 121111 1111110 00 000112347778999999877776666 999999988887 557999999
Q ss_pred e
Q psy5665 194 T 194 (344)
Q Consensus 194 ~ 194 (344)
.
T Consensus 164 ~ 164 (427)
T COG1236 164 V 164 (427)
T ss_pred c
Confidence 6
No 34
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.62 E-value=1.4e-07 Score=80.44 Aligned_cols=124 Identities=20% Similarity=0.244 Sum_probs=67.3
Q ss_pred EEEEeCCCCChH-HHHHHHHHcCC---cccEEEecCCchhhhcChhhhhhhhe-e--ccccccccccchhHHHh-hhhhh
Q psy5665 66 CVIIDPVLEQAD-RDVTLINQLGL---TLKYVINTHVHADHITGTGKIKTMYV-I--NTHVHADHITGTGKIKT-MVNNV 137 (344)
Q Consensus 66 ~iLIDtG~~~~~-~~~~~l~~~~~---~i~~Vi~TH~H~DH~gg~~~~~~~~~-v--~~~~~~d~~~~~~~l~~-~~~~~ 137 (344)
.+|||+|.+..+ ++..++..... .+++|++||.|.||+.|+..+..... . .+++.... ...+.. .+ ..
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~---~~~l~~~~~-~~ 77 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPET---KEFLREYKF-GI 77 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHH---HHHHHHHHH-TH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHH---HHHHHhhhc-cc
Confidence 589999976321 12223332211 69999999999999999777766431 1 22222211 111110 00 00
Q ss_pred HHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceE----EEeC--CCceeeeccee
Q psy5665 138 QSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVT----YVNQ--GEGMAFTGDTL 195 (344)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~----~~~~--~~~iL~~GD~~ 195 (344)
.. ...............+..+++++..++.++++ |...... +.+. +.+++|+||+.
T Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~ 139 (194)
T PF12706_consen 78 LD-LYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTN 139 (194)
T ss_dssp HT-TCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSS
T ss_pred cc-ccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccc
Confidence 00 00001111234566677899999888888775 5555443 4444 56899999973
No 35
>PRK00055 ribonuclease Z; Reviewed
Probab=98.57 E-value=2e-07 Score=83.88 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=41.9
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCC---cccEEEecCCchhhhcChhhhhhh
Q psy5665 53 THTYILADKLSKECVIIDPVLEQADRDVTLINQLGL---TLKYVINTHVHADHITGTGKIKTM 112 (344)
Q Consensus 53 ~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~---~i~~Vi~TH~H~DH~gg~~~~~~~ 112 (344)
++|++|..+ +..+|||+|.+. ...+.+.+. ++++|++||.|.||++|++.+...
T Consensus 20 ~~~~li~~~--~~~iLiD~G~g~----~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~ 76 (270)
T PRK00055 20 VSSILLRLG--GELFLFDCGEGT----QRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLST 76 (270)
T ss_pred CCEEEEEEC--CcEEEEECCHHH----HHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHH
Confidence 789999875 568999999652 234444444 389999999999999999887643
No 36
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.49 E-value=5.6e-07 Score=84.29 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=82.9
Q ss_pred eeecccCCeeEEEEEecC---cceEEEEEEeCCCCeEEEEeCCCCChH---HHHHHHH--H-cCCcccEEEecCCchhhh
Q psy5665 33 LENAFSNGFLFRQLFDSI---SYTHTYILADKLSKECVIIDPVLEQAD---RDVTLIN--Q-LGLTLKYVINTHVHADHI 103 (344)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~iLIDtG~~~~~---~~~~~l~--~-~~~~i~~Vi~TH~H~DH~ 103 (344)
..-+.-.+-|++.-+.++ .+.+|+++.++ ++.||+|||...+. .....+. + .-..+|+|++||+|.||+
T Consensus 171 hr~~~~~~~wvRvt~LGg~~EVGRSa~lv~T~--eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~ 248 (637)
T COG1782 171 HREPLVKDRWVRVTALGGFREVGRSALLVSTP--ESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHC 248 (637)
T ss_pred cCCccccCceEEEEeeccchhccceeEEEecC--CceEEEeccccCCCCccccCcccccccccccccceEEEeecccccc
Confidence 333333334444444332 46799999998 55899999944222 2222222 1 111599999999999999
Q ss_pred cChhhhhh-hheeccccccccccchhHHHhhhhhhHHhhhcccccc------------cceEccCCCeeEeC-CeeEEEE
Q psy5665 104 TGTGKIKT-MYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQ------------ADIHVTHGDTIDFG-DQQLEVR 169 (344)
Q Consensus 104 gg~~~~~~-~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g-~~~i~~~ 169 (344)
|-++.+=. .|.=++|+.+..-...-.+.. +.-....+..... ....+..|+.-++. +..+.++
T Consensus 249 G~lP~LfkYgy~GPVY~T~PTRDlm~LLq~---Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~ 325 (637)
T COG1782 249 GFLPLLFKYGYDGPVYCTPPTRDLMVLLQL---DYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFY 325 (637)
T ss_pred cchhhhhhcCCCCCeeeCCCcHHHHHHHHH---HHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEe
Confidence 99998644 344445554432110111111 1111111111111 11233344444433 2344444
Q ss_pred eCCCCCCCceEEEeC--C--Cceeeecceee
Q psy5665 170 ATPGHTDGCVTYVNQ--G--EGMAFTGDTLL 196 (344)
Q Consensus 170 ~~pght~~~~~~~~~--~--~~iL~~GD~~~ 196 (344)
. .||.-||.+..+. + .+++|+||-=+
T Consensus 326 N-AGHILGSA~~HlHIGdGlyNi~yTGDfk~ 355 (637)
T COG1782 326 N-AGHILGSAMAHLHIGDGLYNIVYTGDFKF 355 (637)
T ss_pred c-ccchhcceeeEEEecCCceeEEEeccccc
Confidence 4 4899887655443 3 37999999633
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.41 E-value=1.1e-06 Score=72.93 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=56.5
Q ss_pred ceEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhheeccccccccccchhHHH
Q psy5665 52 YTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIK 131 (344)
Q Consensus 52 ~~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l~ 131 (344)
+.+||+|+++ +..||+||.... ........++++|++||.|.||+.--. + ..+
T Consensus 6 gha~~~ie~~--g~~iliDP~~~~-----~~~~~~~~~~D~IlisH~H~DH~~~~~-l------------------~~~- 58 (163)
T PF13483_consen 6 GHASFLIETG--GKRILIDPWFSS-----VGYAPPPPKADAILISHSHPDHFDPET-L------------------KRL- 58 (163)
T ss_dssp ETTEEEEEET--TEEEEES--TTT-------T-TSS-B-SEEEESSSSTTT-CCCC-C------------------CCH-
T ss_pred EeeEEEEEEC--CEEEEECCCCCc-----cCcccccCCCCEEEECCCccccCChhH-h------------------hhc-
Confidence 4589999986 789999998430 011111256999999999999998811 0 000
Q ss_pred hhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCC-----CCCCC-ceEEEeC--CCceeeecceee
Q psy5665 132 TMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP-----GHTDG-CVTYVNQ--GEGMAFTGDTLL 196 (344)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~p-----ght~~-~~~~~~~--~~~iL~~GD~~~ 196 (344)
......+..++.+++++..++.+... ++..+ .+.+++. +.++++.||+..
T Consensus 59 ---------------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 59 ---------------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGF 116 (163)
T ss_dssp ---------------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S
T ss_pred ---------------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCcc
Confidence 11223444577788888887776542 33333 3444444 446777777643
No 38
>KOG4736|consensus
Probab=98.37 E-value=1.5e-06 Score=76.50 Aligned_cols=109 Identities=20% Similarity=0.343 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCCc---ccEEEecCCchhhhcChhhhhhhheeccccccccccchhHH
Q psy5665 54 HTYILADKLSKECVIIDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130 (344)
Q Consensus 54 ~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~~---i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l 130 (344)
+.-++.+ +..++++|+|.+ .|++.+++ |+.|++||.|++|.|++..|+.... +
T Consensus 96 ~~tl~~d--~~~v~v~~~gls-------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~sp~---------------l 151 (302)
T KOG4736|consen 96 QITLVVD--GGDVVVVDTGLS-------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQSPI---------------L 151 (302)
T ss_pred ccceeec--CCceEEEecCCc-------hhhhcCcChhhcceeEEeccCcccccccccccCCHH---------------H
Confidence 3444544 377999999965 56666654 8999999999999999877765421 1
Q ss_pred HhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCC----Cceeeecce
Q psy5665 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQG----EGMAFTGDT 194 (344)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~----~~iL~~GD~ 194 (344)
.... .+.. .......+.+...+.++ ..+++..+|||+..++.+++.. ..+.++||.
T Consensus 152 ~~s~----e~~g---r~~~pt~l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDL 211 (302)
T KOG4736|consen 152 YHSM----EYIG---RHVTPTELDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDL 211 (302)
T ss_pred hhhh----hhcC---CccChhhhccCCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeec
Confidence 1100 0000 00112234445556666 4677888999999988777763 234455554
No 39
>KOG1136|consensus
Probab=98.37 E-value=1.3e-06 Score=77.79 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=80.8
Q ss_pred cCcceEEEEEEeCCCCeEEEEeCCC--C--ChHHHH--HHHHHcC---CcccEEEecCCchhhhcChhhhhhhh--eecc
Q psy5665 49 SISYTHTYILADKLSKECVIIDPVL--E--QADRDV--TLINQLG---LTLKYVINTHVHADHITGTGKIKTMY--VINT 117 (344)
Q Consensus 49 ~~~~~~~~li~~~~~~~~iLIDtG~--~--~~~~~~--~~l~~~~---~~i~~Vi~TH~H~DH~gg~~~~~~~~--~v~~ 117 (344)
...+.+|.++.-. ++.|++|+|. + ...++. .++.+.| .-|+.|++||+|.||+|.+++|.+.- .=++
T Consensus 13 QdvGrSCilvsi~--Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPI 90 (501)
T KOG1136|consen 13 QDVGRSCILVSIG--GKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPI 90 (501)
T ss_pred cccCceEEEEEEC--CcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCce
Confidence 4467789998874 7899999993 2 222222 2333332 22899999999999999999999853 2223
Q ss_pred ccccccccchhHHHhhhhhhHHhhhcccccc-------------cceEccCCCeeEeCC-eeEEEEeCCCCCCCceEEEe
Q psy5665 118 HVHADHITGTGKIKTMVNNVQSIISKESGAQ-------------ADIHVTHGDTIDFGD-QQLEVRATPGHTDGCVTYVN 183 (344)
Q Consensus 118 ~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~-~~i~~~~~pght~~~~~~~~ 183 (344)
|.......-...+.+-|... ........ ....+.-.+.+++.. ..++.+.. ||.-|..++++
T Consensus 91 YMt~PTkaicPvlLeDyRkv---~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLGAaMf~i 166 (501)
T KOG1136|consen 91 YMTYPTKAICPVLLEDYRKV---AVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLGAAMFYI 166 (501)
T ss_pred EEecchhhhchHHHHHHHHH---hccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccceeEEEE
Confidence 33322211133333333221 11100000 111223344555543 44555554 89999888877
Q ss_pred C--CCceeeecce
Q psy5665 184 Q--GEGMAFTGDT 194 (344)
Q Consensus 184 ~--~~~iL~~GD~ 194 (344)
. +..++++||-
T Consensus 167 kvGd~svvYTGDY 179 (501)
T KOG1136|consen 167 KVGDQSVVYTGDY 179 (501)
T ss_pred EecceeEEEecCc
Confidence 6 5679999996
No 40
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.25 E-value=2.6e-05 Score=67.26 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=74.9
Q ss_pred EEEEEEeCCCCeEEEEeCCCC----------------ChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe---
Q psy5665 54 HTYILADKLSKECVIIDPVLE----------------QADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV--- 114 (344)
Q Consensus 54 ~~~li~~~~~~~~iLIDtG~~----------------~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~--- 114 (344)
-+.+|++. +-.||||+|-+ ..++..+.+++.-.+.+-|.+||.|.||.-- .|...|.
T Consensus 16 mAt~vet~--dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtP--f~~~~y~~s~ 91 (304)
T COG2248 16 MATFVETK--DVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTP--FFDGIYEASG 91 (304)
T ss_pred hhheeecC--CeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCc--cccchhhhcc
Confidence 34566664 77899999932 1133334455555668899999999999864 2222221
Q ss_pred ----------eccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCC-c-----
Q psy5665 115 ----------INTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDG-C----- 178 (344)
Q Consensus 115 ----------v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~-~----- 178 (344)
....-|+...-... ++ ..+..++........+..+.||..|++|+..+++...--|-++ +
T Consensus 92 e~~~eiY~gK~lLlKhPte~IN~S---Q~-~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyV 167 (304)
T COG2248 92 ETAKEIYKGKLLLLKHPTENINRS---QR-RRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYV 167 (304)
T ss_pred cchHHHhcCcEEEecCchhhhCHH---HH-HHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceE
Confidence 11111221111011 11 1122233333344457889999999999999998766445554 2
Q ss_pred eEEEeC--CCceeeeccee
Q psy5665 179 VTYVNQ--GEGMAFTGDTL 195 (344)
Q Consensus 179 ~~~~~~--~~~iL~~GD~~ 195 (344)
+.+.+. +..++|+-|.-
T Consensus 168 l~v~V~dg~~~i~faSDvq 186 (304)
T COG2248 168 LMVAVTDGKSSIVFASDVQ 186 (304)
T ss_pred EEEEEecCCeEEEEccccc
Confidence 223333 34577777763
No 41
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.04 E-value=3e-05 Score=72.34 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.2
Q ss_pred ceEccCCCeeEeCCeeEEEEeC
Q psy5665 150 DIHVTHGDTIDFGDQQLEVRAT 171 (344)
Q Consensus 150 ~~~~~~~~~~~~g~~~i~~~~~ 171 (344)
...+..++.+.+++.++.++..
T Consensus 161 v~~v~~Ge~i~ig~v~It~lpa 182 (355)
T PRK11709 161 CIVVKPGDVVKVKDIKIHALDS 182 (355)
T ss_pred EEEecCCCcEEECCEEEEEEec
Confidence 3467788999999988887755
No 42
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=97.99 E-value=3.2e-05 Score=68.92 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.0
Q ss_pred EEEEEEeCCCCeEEEEe-CCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhh
Q psy5665 54 HTYILADKLSKECVIID-PVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKT 111 (344)
Q Consensus 54 ~~~li~~~~~~~~iLID-tG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~ 111 (344)
.+|++..+ ..+|+| .|.+....+.+.+. .+++|++||.|.||++|+..+..
T Consensus 11 ~t~~~~~~---~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~ 62 (277)
T TIGR02650 11 FSTIIYSP---EEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNI 62 (277)
T ss_pred eEEEEECc---hhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHh
Confidence 45666543 359999 88765555555444 37999999999999999965544
No 43
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=97.97 E-value=2.4e-05 Score=71.21 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=40.2
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHcCC---cccEEEecCCchhhhcChhhhhhh
Q psy5665 53 THTYILADKLSKECVIIDPVLEQADRDVTLINQLGL---TLKYVINTHVHADHITGTGKIKTM 112 (344)
Q Consensus 53 ~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~~~---~i~~Vi~TH~H~DH~gg~~~~~~~ 112 (344)
..++++..+ ++..|||||.+ .+.++...+. +|++|++||.|.||+.|+..+...
T Consensus 20 ~~s~ll~~~--~~~~L~DcGeG----t~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~ 76 (292)
T COG1234 20 VSSILLRLE--GEKFLFDCGEG----TQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVS 76 (292)
T ss_pred cceeEEEeC--CeeEEEECCHh----HHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHH
Confidence 467788764 67889999954 2344444433 489999999999999998876654
No 44
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.90 E-value=0.00018 Score=64.47 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=37.9
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCCChHHHHH----HHHHcCCcccEEEecCCchhhhcChhhh
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLEQADRDVT----LINQLGLTLKYVINTHVHADHITGTGKI 109 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~~~~~~~~----~l~~~~~~i~~Vi~TH~H~DH~gg~~~~ 109 (344)
.+.+|++|+.. +..+||||.......... .....-.++++|++||.|.||++-....
T Consensus 12 lGha~~lie~~--~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~ 72 (258)
T COG2220 12 LGHAAFLIETG--GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLI 72 (258)
T ss_pred ecceEEEEEEC--CEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHH
Confidence 45789999986 679999998431111000 0011223489999999999999985433
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.82 E-value=4.3e-05 Score=68.88 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=36.1
Q ss_pred EEEEeCCCCChHHHHHHHHHcC-CcccEEEecCCchhhhcChhhhhhhheecccccc
Q psy5665 66 CVIIDPVLEQADRDVTLINQLG-LTLKYVINTHVHADHITGTGKIKTMYVINTHVHA 121 (344)
Q Consensus 66 ~iLIDtG~~~~~~~~~~l~~~~-~~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~ 121 (344)
.++||+|.+ +..+..+.+ ..+++||+||.|.||+.|+..|...+....+...
T Consensus 42 ~~lid~g~~----~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~~~~~~~~ 94 (269)
T COG1235 42 TLLIDAGPD----LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYTLPIYVNP 94 (269)
T ss_pred eEEEecChh----HHhhhhcccccccCeEEEecccHHhhcChHHHHHHhcCCccccc
Confidence 456777743 122222222 2499999999999999999999998766655543
No 46
>KOG1137|consensus
Probab=97.78 E-value=2.5e-05 Score=74.07 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=86.7
Q ss_pred cceeeeecccCCeeEEEEEecCcceEEEEEEeCCCCeEEEEeCCC--CC-hHHHHHHHHHcCCc-ccEEEecCCchhhhc
Q psy5665 29 SVHILENAFSNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVL--EQ-ADRDVTLINQLGLT-LKYVINTHVHADHIT 104 (344)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~iLIDtG~--~~-~~~~~~~l~~~~~~-i~~Vi~TH~H~DH~g 104 (344)
+-+++..|++. +...+.+|.+++-+ ++.|+.|||. +. .-+-+........+ ++.+++||+|.||++
T Consensus 11 ~d~l~~~pLGa--------g~EVGRSC~ile~k--Gk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~a 80 (668)
T KOG1137|consen 11 SDQLKFTPLGA--------GNEVGRSCHILEYK--GKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAA 80 (668)
T ss_pred CCcEEEEECCC--------CcccCceEEEEEec--CeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcc
Confidence 34555566654 35577899999986 7899999993 21 11112233333333 899999999999999
Q ss_pred Chhhhhhhh-----eeccccccccccchhHHHhhhhhhHHhhhccccc-------c--cceEccCCCeeEeCCeeEEEEe
Q psy5665 105 GTGKIKTMY-----VINTHVHADHITGTGKIKTMVNNVQSIISKESGA-------Q--ADIHVTHGDTIDFGDQQLEVRA 170 (344)
Q Consensus 105 g~~~~~~~~-----~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~g~~~i~~~~ 170 (344)
.++++.++. .+.+|....- .+++..-|-....+.....-. . ....+.--+..++.+.++..++
T Consensus 81 slp~~~qkTsf~grvfmth~TkAi---~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~ 157 (668)
T KOG1137|consen 81 SLPFTLQKTSFIGRVFMTHPTKAI---YKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH 157 (668)
T ss_pred cccceeeeccccceeEEecchHHH---HHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec
Confidence 999998764 3334433322 222222221111111100000 0 0011122234445554555555
Q ss_pred CCCCCCCceEEEeC--CCceeeecce
Q psy5665 171 TPGHTDGCVTYVNQ--GEGMAFTGDT 194 (344)
Q Consensus 171 ~pght~~~~~~~~~--~~~iL~~GD~ 194 (344)
.||.-+.+++.+. +-++||+||-
T Consensus 158 -aGhVlgacMf~veiagv~lLyTGd~ 182 (668)
T KOG1137|consen 158 -AGHVLGACMFMVEIAGVRLLYTGDY 182 (668)
T ss_pred -cchhhhheeeeeeeceEEEEecccc
Confidence 6999999888877 4579999996
No 47
>PLN02469 hydroxyacylglutathione hydrolase
Probab=97.47 E-value=4e-05 Score=68.50 Aligned_cols=26 Identities=42% Similarity=0.623 Sum_probs=21.9
Q ss_pred hheeccccccccccchhHHHhhhhhh
Q psy5665 112 MYVINTHVHADHITGTGKIKTMVNNV 137 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~~~~ 137 (344)
.+++.||.|.||++|...+++.++++
T Consensus 48 ~~Il~TH~H~DH~gG~~~l~~~~~~~ 73 (258)
T PLN02469 48 KLVLTTHHHWDHAGGNEKIKKLVPGI 73 (258)
T ss_pred cEEEecCCCCccccCHHHHHHHCCCC
Confidence 46899999999999999998877544
No 48
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.36 E-value=0.0001 Score=67.88 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.1
Q ss_pred hheeccccccccccchhHHHhhh
Q psy5665 112 MYVINTHVHADHITGTGKIKTMV 134 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~ 134 (344)
.+++.+|.|.||++|...+.+.+
T Consensus 123 ~~ILlTH~H~DH~GG~~~L~~~~ 145 (329)
T PLN02398 123 TYILNTHHHYDHTGGNLELKARY 145 (329)
T ss_pred eEEEECCCCchhhCCHHHHHHhc
Confidence 46889999999999999988775
No 49
>KOG1135|consensus
Probab=97.27 E-value=0.0018 Score=63.30 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=83.7
Q ss_pred cCcceEEEEEEeCCCCeEEEEeCCCCCh--HHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhe--eccccccccc
Q psy5665 49 SISYTHTYILADKLSKECVIIDPVLEQA--DRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYV--INTHVHADHI 124 (344)
Q Consensus 49 ~~~~~~~~li~~~~~~~~iLIDtG~~~~--~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~--v~~~~~~d~~ 124 (344)
...+.-||+++-+ +-.+|||||++.. ..+...++..-.+|++|++||...=|+||+++...... +.+|+...-+
T Consensus 11 ~de~~~cyllqiD--~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~ 88 (764)
T KOG1135|consen 11 TDEGPLCYLLQID--GVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVI 88 (764)
T ss_pred cCCCcceEEEEEc--CeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchh
Confidence 3455689999986 6689999997622 34444455444569999999999999999999888754 3456554332
Q ss_pred c-chhHHHhhhhhhHH--hhhccc------ccccceEccCCCeeEeCC--eeEEEEeC-CCCCCCceEEEeC--CCceee
Q psy5665 125 T-GTGKIKTMVNNVQS--IISKES------GAQADIHVTHGDTIDFGD--QQLEVRAT-PGHTDGCVTYVNQ--GEGMAF 190 (344)
Q Consensus 125 ~-~~~~l~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~~~g~--~~i~~~~~-pght~~~~~~~~~--~~~iL~ 190 (344)
. |.-...+.+..... .+.... .......++..+...+-+ ..+.+-+. .||..|...+-+. .+++++
T Consensus 89 ~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~~E~ivY 168 (764)
T KOG1135|consen 89 KMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKVGEDIVY 168 (764)
T ss_pred hhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEecCceEEE
Confidence 2 22223333322111 000000 001112344445444433 23444333 4899998877665 457888
Q ss_pred ecce
Q psy5665 191 TGDT 194 (344)
Q Consensus 191 ~GD~ 194 (344)
+-|-
T Consensus 169 avd~ 172 (764)
T KOG1135|consen 169 AVDF 172 (764)
T ss_pred EEec
Confidence 7764
No 50
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=97.08 E-value=0.00023 Score=62.59 Aligned_cols=48 Identities=42% Similarity=0.728 Sum_probs=42.9
Q ss_pred cceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeeecceee
Q psy5665 149 ADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLL 196 (344)
Q Consensus 149 ~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~GD~~~ 196 (344)
......+++.+.+++..++++++||||++++++++++.++||+||.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~ 170 (252)
T COG0491 123 PLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLF 170 (252)
T ss_pred cceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceec
Confidence 455666789999999999999999999999999999988999999854
No 51
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=96.82 E-value=0.001 Score=64.92 Aligned_cols=134 Identities=18% Similarity=0.276 Sum_probs=79.4
Q ss_pred hheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeee
Q psy5665 112 MYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFT 191 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~ 191 (344)
.+++.+|.|.||+++...+.+.+|+.+.+.++..... +... . ..+......+.+
T Consensus 73 d~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~~~~~~----l~~~------------~----~~~~~~~~~v~~------ 126 (479)
T PRK05452 73 DYIVINHAEEDHAGALTELMAQIPDTPIYCTANAIDS----INGH------------H----HHPEWNFNVVKT------ 126 (479)
T ss_pred CEEEeCCCCcchhchHHHHHHHCCCCEEEECHHHHHH----HHHh------------h----cCCcCeEEEeCC------
Confidence 4688999999999988888877766665554321110 0000 0 000000011111
Q ss_pred cceeeeccCCCccccCC-CCCceeecCCC-CCCCceeeeecCcceeEecceeeccCcccccCCCC---------------
Q psy5665 192 GDTLLIRGCGRTDFQQG-GSGVPVRATPG-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQG--------------- 254 (344)
Q Consensus 192 GD~~~~~~~~~~~~~~~-~~~~~~~~~pG-Ht~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~--------------- 254 (344)
|| .+.+| +..++++.||| ||||++++|.+++++||+||++-...+....+...
T Consensus 127 G~----------~l~lG~~~~l~~i~tP~~H~pgs~~~y~~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~ 196 (479)
T PRK05452 127 GD----------TLDIGNGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYA 196 (479)
T ss_pred CC----------EEecCCCcEEEEEECCCCCCCCceEEEEcCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHH
Confidence 22 35566 46899999997 99999999999999999999732211111111110
Q ss_pred ----C-HHHHHHHHHHHHh--cCCCceEEeeCCCCC
Q psy5665 255 ----D-SHKLFQSVRKEIF--SLPDHFRVYPAHDYH 283 (344)
Q Consensus 255 ----~-~~~~~~sl~~~l~--~l~~~~~v~pgHg~~ 283 (344)
. ...+.+++ ++++ .++.++ |+||||+.
T Consensus 197 ~i~~p~~~~v~~~l-~~~~~l~l~~~~-i~p~HG~i 230 (479)
T PRK05452 197 NILTPFSRLVTPKI-TEILGFNLPVDM-IATSHGVV 230 (479)
T ss_pred HhhhhhHHHHHHHH-HHHhhcCCCCCE-EECCCCce
Confidence 1 11223455 5666 457887 99999944
No 52
>KOG0813|consensus
Probab=96.54 E-value=0.0015 Score=57.70 Aligned_cols=120 Identities=26% Similarity=0.367 Sum_probs=65.9
Q ss_pred ccCCCCCceeecCCCCCCCceeeeecCcceeEecc-eeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC--
Q psy5665 205 FQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGD-TLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD-- 281 (344)
Q Consensus 205 ~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD-~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg-- 281 (344)
+.+++..++|++|||||.||++||..+ .+|+ ++| .|++.|..+.. ..++.+.+.|.......+-+|.-.
T Consensus 102 ~~~~g~~v~~l~TPgHT~~hi~~~~~~----~~~e~~iF---tGDtlf~~GcG-~~FEgt~~~M~~sl~~l~~L~~~t~i 173 (265)
T KOG0813|consen 102 VTVGGLEVRCLHTPGHTAGHICYYVTE----STGERAIF---TGDTLFGAGCG-RFFEGTAEQMDSSLNELIALPDDTRI 173 (265)
T ss_pred EEECCEEEEEEeCCCccCCcEEEEeec----CCCCCeEE---eCCceeecCcc-chhcCCHHHHHHhHHHhhcCCCCceE
Confidence 667788999999999999999999875 6677 556 56665555544 356666566644333333444221
Q ss_pred CCCCc--cccHHHHHHcCCCCC-CCCCHHHHHHHhhhCCCC-CCcccchhhHhhh
Q psy5665 282 YHGFS--HSTVGEEKLYNPRLG-EQISEEKFVEIMNNLKLS-LPKKIDVAVPANM 332 (344)
Q Consensus 282 ~~~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~ 332 (344)
|++.- ...++..+...+.-. .+.....+.+......+. .|.++..+...|.
T Consensus 174 ypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Np 228 (265)
T KOG0813|consen 174 YPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNP 228 (265)
T ss_pred ccCcccccccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCc
Confidence 22211 111111111111000 011233344444455555 7777777776665
No 53
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=96.30 E-value=0.007 Score=53.83 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=51.8
Q ss_pred CCCCceeeeecCcceeEec-c-eeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC--CCCC--ccccHHHH
Q psy5665 220 HTDGCVTYVNQGEGMAFTG-D-TLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD--YHGF--SHSTVGEE 293 (344)
Q Consensus 220 Ht~g~~~~~~~~~~~lf~G-D-~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg--~~~~--~~~~~~~~ 293 (344)
|+|||.. ..-.++.. + .+| +|++.+..+...-+-.+..+.+.++. .+.-+|... +++. ....+...
T Consensus 103 ~tpGHT~----g~i~~~~~~~~~lf---tGDtl~~~g~g~~~~~~~~~~~~Sl~-~l~~l~~~~~i~pGH~~~~~n~~fa 174 (248)
T TIGR03413 103 AVPGHTL----GHIAYYLPDSPALF---CGDTLFSAGCGRLFEGTPEQMYDSLQ-RLAALPDDTLVYCAHEYTLSNLRFA 174 (248)
T ss_pred ECCCCCc----ccEEEEECCCCEEE---EcCccccCCcCCCCCCCHHHHHHHHH-HHHcCCCCeEEECCCCchHHHHHHH
Confidence 7777753 22233332 2 455 45554443322211123333444454 233455543 3332 23333333
Q ss_pred HHc---CCCCCCCCCHHHHHHHhhhCCCCCCcccchhhHhhh
Q psy5665 294 KLY---NPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPANM 332 (344)
Q Consensus 294 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 332 (344)
... |++++. ..+...+..++..++.|.++..+...|-
T Consensus 175 ~~~~p~~~~l~~--~~~~~~~~~~~~~~t~pstl~~E~~~Np 214 (248)
T TIGR03413 175 LTVEPDNPALQE--RLKEVEALRAQGQPTLPSTLGLERATNP 214 (248)
T ss_pred HHhCCCCHHHHH--HHHHHHHHHHCCCCCCCccHHHHHhhCC
Confidence 332 334443 3444555566788999999999998885
No 54
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=96.20 E-value=0.0017 Score=61.80 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=62.7
Q ss_pred hheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeee
Q psy5665 112 MYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFT 191 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~ 191 (344)
.+++.+|.|.||+++...+.+.+|+.+.+.++..... +.. . +.. ..+ ...+.+
T Consensus 71 d~IilTH~H~DHiggl~~l~~~~p~a~V~~~~~~~~~----l~~--~--~~~-~~~------------~~~v~~------ 123 (394)
T PRK11921 71 DYIVANHGEIDHSGALPELMKEIPDTPIYCTKNGAKS----LKG--H--YHQ-DWN------------FVVVKT------ 123 (394)
T ss_pred CEEEeCCCCCchhhHHHHHHHHCCCCEEEECHHHHHH----HHH--H--hCC-CCc------------eEEeCC------
Confidence 3588999999999999888877776655554421110 000 0 000 000 011111
Q ss_pred cceeeeccCCCccccCCCCCceeecCCC-CCCCceeeeecCcceeEeccee
Q psy5665 192 GDTLLIRGCGRTDFQQGGSGVPVRATPG-HTDGCVTYVNQGEGMAFTGDTL 241 (344)
Q Consensus 192 GD~~~~~~~~~~~~~~~~~~~~~~~~pG-Ht~g~~~~~~~~~~~lf~GD~l 241 (344)
| ..+++|+..++++.+|| |||||+++|.+++++||+||++
T Consensus 124 g----------~~l~lG~~~l~~i~tP~~H~p~~~~~y~~~~~vLFsgD~f 164 (394)
T PRK11921 124 G----------DRLEIGSNELIFIEAPMLHWPDSMFTYLTGDNILFSNDAF 164 (394)
T ss_pred C----------CEEeeCCeEEEEEeCCCCCCCCceEEEEcCCCEEEecCcc
Confidence 2 23667888999999999 9999999999999999999974
No 55
>KOG2121|consensus
Probab=96.01 E-value=0.0033 Score=62.24 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=40.0
Q ss_pred eEEEEEEeCCCCeEEEEeCCCCChHHHHHHHH-----HcCCcccEEEecCCchhhhcChhhhhhh
Q psy5665 53 THTYILADKLSKECVIIDPVLEQADRDVTLIN-----QLGLTLKYVINTHVHADHITGTGKIKTM 112 (344)
Q Consensus 53 ~~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~-----~~~~~i~~Vi~TH~H~DH~gg~~~~~~~ 112 (344)
..+++|..+ .+..||.|||.+..-++.+.-- ..-.++++|++||.|+||..|+....++
T Consensus 461 VSS~lv~i~-~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121|consen 461 VSSILVRID-SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred eEEEEEecc-CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHH
Confidence 467888775 4557999999663333322211 1112478999999999999998877654
No 56
>PLN02962 hydroxyacylglutathione hydrolase
Probab=95.85 E-value=0.0069 Score=53.87 Aligned_cols=26 Identities=58% Similarity=0.880 Sum_probs=22.9
Q ss_pred ccCCCCCceeecCCCCCCCceeeeec
Q psy5665 205 FQQGGSGVPVRATPGHTDGCVTYVNQ 230 (344)
Q Consensus 205 ~~~~~~~~~~~~~pGHt~g~~~~~~~ 230 (344)
+.+|+..+++++|||||+||++|+.+
T Consensus 110 i~~g~~~l~vi~tPGHT~g~v~~~~~ 135 (251)
T PLN02962 110 IYFGDLYLEVRATPGHTAGCVTYVTG 135 (251)
T ss_pred EEECCEEEEEEECCCCCcCcEEEEec
Confidence 66678899999999999999999853
No 57
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=94.66 E-value=0.066 Score=50.11 Aligned_cols=130 Identities=22% Similarity=0.253 Sum_probs=84.5
Q ss_pred hheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeee
Q psy5665 112 MYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFT 191 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~ 191 (344)
.|++..|.++||.+....+.+.+|+++.++++...... ..-++.+.. +.. .-.
T Consensus 74 DYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~~~~~~L--------------------~~~~~~~~~--~~i-----vk~ 126 (388)
T COG0426 74 DYIIVNHTEPDHSGSLPELLELAPNAKIICSKLAARFL--------------------KGFYHDPEW--FKI-----VKT 126 (388)
T ss_pred eEEEECCCCcchhhhHHHHHHhCCCCEEEeeHHHHHHH--------------------HHhcCCccc--eee-----cCC
Confidence 46788999999999999998888887776665321111 111122221 111 113
Q ss_pred cceeeeccCCCccccCCCCCceeecCCC-CCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHH----------
Q psy5665 192 GDTLLIRGCGRTDFQQGGSGVPVRATPG-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLF---------- 260 (344)
Q Consensus 192 GD~~~~~~~~~~~~~~~~~~~~~~~~pG-Ht~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~---------- 260 (344)
||. +++|+.+++++.+|= |+||+++.|.+.+++||++|+.-.-.+... .+..+...+.
T Consensus 127 Gd~----------ldlGg~tL~Fi~ap~LHWPd~m~TYd~~~kILFS~D~fG~h~~~~~-~fded~~~~~~~~~~Y~~~l 195 (388)
T COG0426 127 GDT----------LDLGGHTLKFIPAPFLHWPDTMFTYDPEDKILFSCDAFGAHVCDDY-RFDEDIEELLPDMRKYYANL 195 (388)
T ss_pred CCE----------eccCCcEEEEEeCCCCCCCCceeEeecCCcEEEccccccccccchh-ccccCHHHHHHHHHHHHHHh
Confidence 444 788999999999887 999999999999999999997543334431 2222222221
Q ss_pred ---------HHHHHHHhcCCCceEEeeCCC
Q psy5665 261 ---------QSVRKEIFSLPDHFRVYPAHD 281 (344)
Q Consensus 261 ---------~sl~~~l~~l~~~~~v~pgHg 281 (344)
..+ +++..++.+. |+|+||
T Consensus 196 m~p~~~~v~~~l-~~~~~l~i~~-IaP~HG 223 (388)
T COG0426 196 MAPNARLVLWAL-KKIKLLKIEM-IAPSHG 223 (388)
T ss_pred hcccHHHHHHHH-hhhcccCccE-EEcCCC
Confidence 222 4455566776 999999
No 58
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=94.64 E-value=0.024 Score=50.45 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCCceeeeecCcceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC----CCCCccccHHHHHH
Q psy5665 220 HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD----YHGFSHSTVGEEKL 295 (344)
Q Consensus 220 Ht~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg----~~~~~~~~~~~~~~ 295 (344)
|+|||+. +.-+++..+.+| +|++.+.++..+-+-.+..+.+.++. .+.-+|... .++.....+.....
T Consensus 106 ~tPGHT~----ghi~~~~~~~lF---tGDtlf~~g~gr~f~g~~~~~~~Sl~-kl~~l~~~t~i~pgH~y~~~n~~fa~~ 177 (251)
T PRK10241 106 ATPGHTL----GHICYFSKPYLF---CGDTLFSGGCGRLFEGTASQMYQSLK-KINALPDDTLICCAHEYTLSNMKFALS 177 (251)
T ss_pred EcCCCCc----cceeeecCCcEE---EcCeeccCCcCCCCCCCHHHHHHHHH-HHHcCCCCEEEECCCCChhhhHHHHHH
Confidence 5677663 233444445566 56665554433222223334444554 222355544 23333455555444
Q ss_pred ---cCCCCCCCCCHHHHHHHhhhCCCCCCcccchhhHhhh
Q psy5665 296 ---YNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPANM 332 (344)
Q Consensus 296 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 332 (344)
.|+.++. ..++..+...+..+++|.++..+...|-
T Consensus 178 ~~p~n~~l~~--~~~~~~~~~~~~~~t~pstl~~E~~~Np 215 (251)
T PRK10241 178 ILPHDLSIND--YYRKVKELRAKNQITLPVILKNERQINL 215 (251)
T ss_pred hCCCCHHHHH--HHHHHHHHHHCCCCcCCccHHHHHhhCC
Confidence 3334443 3444555567788999999999998886
No 59
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=93.51 E-value=0.11 Score=47.98 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=36.4
Q ss_pred cceEEEEEEeCCCCeEEEEeCCCC--ChHHHHHH---------------------HHH---cCCcccEEEecCCchhhhc
Q psy5665 51 SYTHTYILADKLSKECVIIDPVLE--QADRDVTL---------------------INQ---LGLTLKYVINTHVHADHIT 104 (344)
Q Consensus 51 ~~~~~~li~~~~~~~~iLIDtG~~--~~~~~~~~---------------------l~~---~~~~i~~Vi~TH~H~DH~g 104 (344)
+..++|++.....+..+-+|+|.- ....+... .++ .-..|...++||.|.||+.
T Consensus 15 ~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLDHi~ 94 (335)
T PF02112_consen 15 GNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLDHIA 94 (335)
T ss_pred CCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchhhHH
Confidence 456889999876778999999832 11111000 000 0113789999999999999
Q ss_pred Ch
Q psy5665 105 GT 106 (344)
Q Consensus 105 g~ 106 (344)
|+
T Consensus 95 gL 96 (335)
T PF02112_consen 95 GL 96 (335)
T ss_pred HH
Confidence 95
No 60
>KOG0814|consensus
Probab=93.48 E-value=0.045 Score=44.93 Aligned_cols=25 Identities=64% Similarity=1.084 Sum_probs=22.7
Q ss_pred cccCCCCCceeecCCCCCCCceeee
Q psy5665 204 DFQQGGSGVPVRATPGHTDGCVTYV 228 (344)
Q Consensus 204 ~~~~~~~~~~~~~~pGHt~g~~~~~ 228 (344)
.+.+|+..+++.+|||||+||+.|.
T Consensus 105 ~i~~G~~~le~ratPGHT~GC~TyV 129 (237)
T KOG0814|consen 105 IIEIGGLKLEVRATPGHTNGCVTYV 129 (237)
T ss_pred EEEEccEEEEEecCCCCCCceEEEE
Confidence 3778899999999999999999995
No 61
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=92.93 E-value=0.06 Score=51.81 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=31.6
Q ss_pred ccCC-CCCceeecCCCCCCCceeeee--cCcceeEecceeec
Q psy5665 205 FQQG-GSGVPVRATPGHTDGCVTYVN--QGEGMAFTGDTLLI 243 (344)
Q Consensus 205 ~~~~-~~~~~~~~~pGHt~g~~~~~~--~~~~~lf~GD~l~~ 243 (344)
+++| +..++++.+++|+||+++|.. +..+++|+||+.+.
T Consensus 121 ~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 121 IETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred EEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 5554 478999999999999999986 45679999998764
No 62
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=92.07 E-value=0.75 Score=31.38 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=33.6
Q ss_pred EEEEEEeCCCCeEEEE-eCCCCChHHHHHHHHHcCC---cccEEEecCCc-hhhhcC
Q psy5665 54 HTYILADKLSKECVII-DPVLEQADRDVTLINQLGL---TLKYVINTHVH-ADHITG 105 (344)
Q Consensus 54 ~~~li~~~~~~~~iLI-DtG~~~~~~~~~~l~~~~~---~i~~Vi~TH~H-~DH~gg 105 (344)
.|.++..+ ++..|+ ++|.+ . .+.+.+.++ ++..|++|+.. +|++||
T Consensus 13 p~l~l~~d--~~rYlFGn~gEG-t---QR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFD--SRRYLFGNCGEG-T---QRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeC--CceEEeccCCcH-H---HHHHHHcCCCccccceEEECCCCcccccCC
Confidence 57777775 568999 99865 2 233333433 48999999999 999987
No 63
>KOG1361|consensus
Probab=91.35 E-value=0.33 Score=46.73 Aligned_cols=93 Identities=16% Similarity=0.125 Sum_probs=49.5
Q ss_pred cccEEEecCCchhhhcChhhhhhhheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEE
Q psy5665 89 TLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEV 168 (344)
Q Consensus 89 ~i~~Vi~TH~H~DH~gg~~~~~~~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~ 168 (344)
.+.+=++||+|.||..|+.--=...+ .|...-. +..+..... .....-..+.-++.+...+..+.+
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~p~--lYCS~it---a~Lv~~~~~---------v~~~~i~~l~l~~~~~i~~~~vt~ 177 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWSHPP--LYCSPIT---ARLVPLKVS---------VTKQSIQALDLNQPLEIPGIQVTL 177 (481)
T ss_pred ccceeeeecccccccccccccccCCc--ccccccc---hhhhhhhcc---------cChhhceeecCCCceeecceEEEE
Confidence 58899999999999988331100000 1111100 111111110 001122233445556565544544
Q ss_pred EeCCCCCCCceEEEeCC---Cceeeecceee
Q psy5665 169 RATPGHTDGCVTYVNQG---EGMAFTGDTLL 196 (344)
Q Consensus 169 ~~~pght~~~~~~~~~~---~~iL~~GD~~~ 196 (344)
+.. -|.||.++++++. ..+|++||--.
T Consensus 178 ldA-nHCPGa~mf~F~~~~~~~~lhtGDFR~ 207 (481)
T KOG1361|consen 178 LDA-NHCPGAVMFLFELSFGPCILHTGDFRA 207 (481)
T ss_pred ecc-ccCCCceEEEeecCCCceEEecCCccc
Confidence 444 5999999988873 37999999644
No 64
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=89.30 E-value=0.3 Score=40.34 Aligned_cols=75 Identities=32% Similarity=0.538 Sum_probs=56.3
Q ss_pred cccCCCCCceeecCCCCCCCceeeeecCcceeEecceeeccCcccccC--CCCCHHHHHHHHHHHHhcCCCceEEeeCC
Q psy5665 204 DFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF--QQGDSHKLFQSVRKEIFSLPDHFRVYPAH 280 (344)
Q Consensus 204 ~~~~~~~~~~~~~~pGHt~g~~~~~~~~~~~lf~GD~l~~~~~~~~~~--~~~~~~~~~~sl~~~l~~l~~~~~v~pgH 280 (344)
.+.+++.+++++.+|||++++++++.++.+++|+||..+......... .......+.+++ .++....... ++|+|
T Consensus 107 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-i~~~H 183 (183)
T smart00849 107 ELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESL-LKLLALDPEL-VVPGH 183 (183)
T ss_pred EEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCCCCccHHHHHHHH-HHhhcCCccE-eecCC
Confidence 356677889999999999999999999999999999987655222211 234556667777 4666777776 99998
No 65
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=74.93 E-value=1.1 Score=39.64 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=16.1
Q ss_pred cccEEEecCCchhhhcCh
Q psy5665 89 TLKYVINTHVHADHITGT 106 (344)
Q Consensus 89 ~i~~Vi~TH~H~DH~gg~ 106 (344)
.|+.-++||.|.||+.|+
T Consensus 112 ~I~~y~ITH~HLDHIsGl 129 (356)
T COG5212 112 SINSYFITHAHLDHISGL 129 (356)
T ss_pred hhhheEeccccccchhce
Confidence 488899999999999993
No 66
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=68.10 E-value=32 Score=31.10 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=38.4
Q ss_pred EEEEEEeCCCCeEEEEeCCCCChHHHHHHHHHc---CCcccEEEecCCchhhhcChhhhhhhh
Q psy5665 54 HTYILADKLSKECVIIDPVLEQADRDVTLINQL---GLTLKYVINTHVHADHITGTGKIKTMY 113 (344)
Q Consensus 54 ~~~li~~~~~~~~iLIDtG~~~~~~~~~~l~~~---~~~i~~Vi~TH~H~DH~gg~~~~~~~~ 113 (344)
-+.+|.-. +++..|..|-.. .+++.+.++++ +-+|++|+.--....|..-+..+.++|
T Consensus 21 RMTVVrL~-~G~L~VhSPvap-T~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~af 81 (285)
T PF14234_consen 21 RMTVVRLS-DGGLWVHSPVAP-TPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAF 81 (285)
T ss_pred eEEEEEEC-CCCEEEECCCCC-CHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHC
Confidence 45566654 355777777643 46777777776 668999998766556877755555544
No 67
>KOG3592|consensus
Probab=65.02 E-value=7.8 Score=39.11 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=35.8
Q ss_pred CeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhcChhhhhhhhee
Q psy5665 64 KECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVI 115 (344)
Q Consensus 64 ~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~~~~~~~v 115 (344)
+=.|||+-|...-..+...++.+. +|+.|++||.-.|..+|+..+..+.+.
T Consensus 57 Gf~iLv~GgserKS~fwklVrHld-rVdaVLLthpg~dNLpginsllqrkla 107 (934)
T KOG3592|consen 57 GFNILVNGGSERKSCFWKLVRHLD-RVDAVLLTHPGADNLPGINSLLQRKLA 107 (934)
T ss_pred ceEEeecCCcccccchHHHHHHHh-hhhhhhhcccccCccccchHHHHHHHH
Confidence 556788777553344444444332 589999999999999998888765543
No 68
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=63.41 E-value=4.3 Score=40.33 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=57.4
Q ss_pred hheeccccccccccchhHHHhhhhhhHHhhhcccccccceEccCCCeeEeCCeeEEEEeCCCCCCCceEEEeCCCceeee
Q psy5665 112 MYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFT 191 (344)
Q Consensus 112 ~~~v~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pght~~~~~~~~~~~~iL~~ 191 (344)
+.++.+|+|.||+++...+..+...++.|.++........-+.+.. ......++... -++
T Consensus 68 kgI~lTHgHeDHIGaip~ll~~~~~~piy~s~lt~~Li~~k~~~~~---~~~~~~~~~ev-----------~~~------ 127 (555)
T COG0595 68 KGIFLTHGHEDHIGALPYLLKQVLFAPIYASPLTAALIKEKLKEHG---LFKNENELHEV-----------KPG------ 127 (555)
T ss_pred eEEEecCCchhhccchHHHHhcCCcCceecCHhhHHHHHHHHHHhc---cccccCceEEe-----------CCC------
Confidence 3588999999999999999887655666655432222211111100 00000111111 011
Q ss_pred cceeeeccCCCccccCCCCCceeecCCCCCCCceeeee--cCcceeEecceeec
Q psy5665 192 GDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVN--QGEGMAFTGDTLLI 243 (344)
Q Consensus 192 GD~~~~~~~~~~~~~~~~~~~~~~~~pGHt~g~~~~~~--~~~~~lf~GD~l~~ 243 (344)
..+.+++..++.+.+.---|+++.+.. +...++++||.-|-
T Consensus 128 -----------~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d 170 (555)
T COG0595 128 -----------SEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFD 170 (555)
T ss_pred -----------CeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEec
Confidence 123345666777777777788888874 34449999998663
No 69
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=57.07 E-value=16 Score=30.81 Aligned_cols=32 Identities=25% Similarity=0.196 Sum_probs=20.9
Q ss_pred EEeCCCCChHHHHHHHHHcCCcccEEEecCCch
Q psy5665 68 IIDPVLEQADRDVTLINQLGLTLKYVINTHVHA 100 (344)
Q Consensus 68 LIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~ 100 (344)
+||||.. .-...+.|++.|..=-+++.||+-.
T Consensus 92 iIdtg~T-l~~aA~~Lk~~GA~~V~~~aTHgvf 123 (184)
T PF14572_consen 92 IIDTGGT-LIKAAELLKERGAKKVYACATHGVF 123 (184)
T ss_dssp EESSTHH-HHHHHHHHHHTTESEEEEEEEEE--
T ss_pred cccchHH-HHHHHHHHHHcCCCEEEEEEeCccc
Confidence 4556643 3344467788888878899999755
No 70
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.03 E-value=46 Score=30.75 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCeEEEEe----CCCCChHHHHHHHHHcCCcccEEEecCC
Q psy5665 63 SKECVIID----PVLEQADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 63 ~~~~iLID----tG~~~~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
++.++||| ||.. .....+.|++.|..--+++.||+
T Consensus 217 Gr~viIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~tHg 255 (320)
T PRK02269 217 GKKCILIDDMIDTAGT-ICHAADALAEAGATEVYASCTHP 255 (320)
T ss_pred CCEEEEEeeecCcHHH-HHHHHHHHHHCCCCEEEEEEECc
Confidence 45566666 5643 45666778888888778999995
No 71
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=37.30 E-value=91 Score=28.65 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=27.7
Q ss_pred EEEEEeCCCCeEEEEe----CCCCChHHHHHHHHHcCCcccEEEecCC
Q psy5665 55 TYILADKLSKECVIID----PVLEQADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 55 ~~li~~~~~~~~iLID----tG~~~~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
..++.+-+++.++||| ||.. ...-.+.|++.|.+=-++..||.
T Consensus 206 ~~~~gdV~gk~~iiVDDiIdTgGT-i~~Aa~~Lk~~GAk~V~a~~tH~ 252 (314)
T COG0462 206 MNLIGDVEGKDVVIVDDIIDTGGT-IAKAAKALKERGAKKVYAAATHG 252 (314)
T ss_pred eecccccCCCEEEEEeccccccHH-HHHHHHHHHHCCCCeEEEEEEch
Confidence 3344444455566655 6643 34445678888988778999996
No 72
>KOG4736|consensus
Probab=37.03 E-value=39 Score=30.58 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=27.5
Q ss_pred ccCCCCCceeecCCCCCCCceeeeec----CcceeEeccee
Q psy5665 205 FQQGGSGVPVRATPGHTDGCVTYVNQ----GEGMAFTGDTL 241 (344)
Q Consensus 205 ~~~~~~~~~~~~~pGHt~g~~~~~~~----~~~~lf~GD~l 241 (344)
+.++ ..+++..|||||.-++++++. -..+.++||.+
T Consensus 173 ~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf 212 (302)
T KOG4736|consen 173 LKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLF 212 (302)
T ss_pred cccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecc
Confidence 4444 678899999999999998865 23478889964
No 73
>PRK11627 hypothetical protein; Provisional
Probab=36.46 E-value=2.7e+02 Score=23.66 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=12.6
Q ss_pred hHHHHHHHHH--HHhhhccccc
Q psy5665 5 TLKKVQWTIT--FALAHCVSSA 24 (344)
Q Consensus 5 ~~~~~~~~~~--~~~~~~~~~~ 24 (344)
||||+++.+. +.+.-|..+|
T Consensus 1 mlkklll~l~a~~~L~gCA~~p 22 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATPS 22 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCCC
Confidence 5899986554 4455566544
No 74
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.16 E-value=55 Score=30.24 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCeEEEEe----CCCCChHHHHHHHHHcCCcccEEEecCCch
Q psy5665 63 SKECVIID----PVLEQADRDVTLINQLGLTLKYVINTHVHA 100 (344)
Q Consensus 63 ~~~~iLID----tG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~ 100 (344)
++.+++|| ||.. .....+.|++.|..--+++.||+-.
T Consensus 217 Gr~viIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~THgvf 257 (319)
T PRK04923 217 GKTCVLVDDLVDTAGT-LCAAAAALKQRGALKVVAYITHPVL 257 (319)
T ss_pred CCEEEEEecccCchHH-HHHHHHHHHHCCCCEEEEEEECccc
Confidence 45566666 5543 4555677888888878899999643
No 75
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=33.74 E-value=29 Score=33.49 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.3
Q ss_pred cCCCCCCCceeeeec--CcceeEecce
Q psy5665 216 ATPGHTDGCVTYVNQ--GEGMAFTGDT 240 (344)
Q Consensus 216 ~~pGHt~g~~~~~~~--~~~~lf~GD~ 240 (344)
.-.||.+|+.+|..+ +.+++|+||.
T Consensus 138 ~~AGHilGsa~~~le~~~~~ilytGD~ 164 (427)
T COG1236 138 YNAGHILGSAAILLEVDGGRILYTGDV 164 (427)
T ss_pred ecCCCccceeEEEEEeCCceEEEEecc
Confidence 368999999999965 6669999996
No 76
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=30.21 E-value=67 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=25.6
Q ss_pred CCCeEEEEeCCCCC---hHHHHHHHHHcCCcccEEEecCC
Q psy5665 62 LSKECVIIDPVLEQ---ADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 62 ~~~~~iLIDtG~~~---~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
.++.++|||--.+. .....+.+++.|...-+++.||+
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHg 256 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHG 256 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEee
Confidence 35667887754221 34555678888888888999996
No 77
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=29.90 E-value=68 Score=29.75 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=25.2
Q ss_pred CCeEEEEe----CCCCChHHHHHHHHHcCCcccEEEecCC
Q psy5665 63 SKECVIID----PVLEQADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 63 ~~~~iLID----tG~~~~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
++.++||| ||.. .....+.|++.|...-+++.||+
T Consensus 230 gr~vlIVDDIidTG~T-l~~aa~~L~~~Ga~~V~~~~THg 268 (326)
T PLN02297 230 GRHVVIVDDLVQSGGT-LIECQKVLAAHGAAKVSAYVTHG 268 (326)
T ss_pred CCeEEEEecccCcHHH-HHHHHHHHHHCCCcEEEEEEECc
Confidence 45566666 5543 45666778888888888999995
No 78
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=29.17 E-value=73 Score=29.69 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=30.7
Q ss_pred ceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC
Q psy5665 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD 281 (344)
Q Consensus 233 ~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg 281 (344)
..++|||..| ..+.++..+.+.+.++.++++. +++|=.
T Consensus 52 ~TiiCGDnyf----------~en~eea~~~i~~mv~~~~pD~-viaGPa 89 (349)
T PF07355_consen 52 ATIICGDNYF----------NENKEEALKKILEMVKKLKPDV-VIAGPA 89 (349)
T ss_pred EEEEECcchh----------hhCHHHHHHHHHHHHHhcCCCE-EEEcCC
Confidence 3788999754 4677888888889999999998 888765
No 79
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.44 E-value=83 Score=27.83 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCChHHHHHHHHHcCCcccEEEecCCchhhhc
Q psy5665 64 KECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHIT 104 (344)
Q Consensus 64 ~~~iLIDtG~~~~~~~~~~l~~~~~~i~~Vi~TH~H~DH~g 104 (344)
+-.+++||..+ ...+...+++|+||-+++-|-+.+|.+-
T Consensus 158 d~l~ViDp~~e--~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 158 DVLFVIDPRKE--KIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred CEEEEeCCcHh--HHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 56789999864 3334556678999999999999999874
No 80
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.24 E-value=49 Score=30.27 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCeEEEEeC----CCCChHHHHHHHHHcCCcccEEEecCC
Q psy5665 63 SKECVIIDP----VLEQADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 63 ~~~~iLIDt----G~~~~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
++.++|||- |.. .....+.|++.|..--+++.||.
T Consensus 211 Gr~vIIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~tHg 249 (301)
T PRK07199 211 GRTPVLVDDIVSTGRT-LIEAARQLRAAGAASPDCVVVHA 249 (301)
T ss_pred CCEEEEEecccCcHHH-HHHHHHHHHHCCCcEEEEEEEee
Confidence 456777774 432 34555778888888788999996
No 81
>KOG3798|consensus
Probab=27.94 E-value=98 Score=27.53 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=14.5
Q ss_pred ccEEEecCCchhhhcC
Q psy5665 90 LKYVINTHVHADHITG 105 (344)
Q Consensus 90 i~~Vi~TH~H~DH~gg 105 (344)
++.++.+|.|.||.-.
T Consensus 133 ~d~~~vsh~h~dhld~ 148 (343)
T KOG3798|consen 133 LDFAVVSHDHYDHLDA 148 (343)
T ss_pred Cceeccccccccccch
Confidence 8999999999999765
No 82
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.16 E-value=1.1e+02 Score=24.34 Aligned_cols=41 Identities=5% Similarity=-0.008 Sum_probs=19.2
Q ss_pred eeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCce
Q psy5665 234 MAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHF 274 (344)
Q Consensus 234 ~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~ 274 (344)
+++.||.+-.+..-+..+.+.....+.+.+.+.+...++++
T Consensus 3 ~~~~Gds~~~g~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~ 43 (157)
T cd01833 3 IMPLGDSITWGDKDHEGHSGYLIDQIAAAAADWVLAAKPDV 43 (157)
T ss_pred eeecCCceeecCCCCCCCCCccHHHHHHHhhhccccCCCCE
Confidence 55666666555333333334444444444433444445554
No 83
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=25.44 E-value=55 Score=33.37 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=22.0
Q ss_pred CCceeecCCCCCCCceeeeec----CcceeEecceee
Q psy5665 210 SGVPVRATPGHTDGCVTYVNQ----GEGMAFTGDTLL 242 (344)
Q Consensus 210 ~~~~~~~~pGHt~g~~~~~~~----~~~~lf~GD~l~ 242 (344)
..++++ .+||++|++++... ..+++|+||.-+
T Consensus 314 i~vt~~-~AGHilGsa~~~~~i~dg~~~IvYTGD~~~ 349 (630)
T TIGR03675 314 IKLTFY-NAGHILGSAIAHLHIGDGLYNIVYTGDFKY 349 (630)
T ss_pred EEEEEe-cCccccCceEEEEEECCCCEEEEEeCCCCC
Confidence 344433 57999999887632 247999999643
No 84
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.35 E-value=81 Score=28.44 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCceEEeeCCC
Q psy5665 257 HKLFQSVRKEIFSLPDHFRVYPAHD 281 (344)
Q Consensus 257 ~~~~~sl~~~l~~l~~~~~v~pgHg 281 (344)
.+.-+.+.+.|....|+++|+.||.
T Consensus 140 ~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeCch
Confidence 3445666677788999999999999
No 85
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.00 E-value=89 Score=28.94 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCeEEEEeC----CCCChHHHHHHHHHcCCcccEEEecCC
Q psy5665 62 LSKECVIIDP----VLEQADRDVTLINQLGLTLKYVINTHV 98 (344)
Q Consensus 62 ~~~~~iLIDt----G~~~~~~~~~~l~~~~~~i~~Vi~TH~ 98 (344)
.++.++|||- |.. .....+.|++.|..--+++.||+
T Consensus 217 ~gk~viIVDDIidTG~T-l~~aa~~Lk~~GA~~V~~~~tHg 256 (323)
T PRK02458 217 AGKKAILIDDILNTGKT-FAEAAKIVEREGATEIYAVASHG 256 (323)
T ss_pred CCCEEEEEcceeCcHHH-HHHHHHHHHhCCCCcEEEEEECh
Confidence 3456777774 432 34555677778887677899997
No 86
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.56 E-value=1.3e+02 Score=28.88 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=30.2
Q ss_pred ceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC
Q psy5665 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD 281 (344)
Q Consensus 233 ~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg 281 (344)
..++|||..| ..+.++..+.+.+.++.+++|. +++|=.
T Consensus 48 aTiiCGDnYf----------~en~eea~~~i~~mv~k~~pDv-~iaGPa 85 (431)
T TIGR01917 48 ATVVCGDSFF----------GENLEEAKAKVLEMIKGANPDI-FIAGPA 85 (431)
T ss_pred EEEEECchhh----------hhCHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 3788999754 4667778788888999999998 888765
No 87
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.18 E-value=1.3e+02 Score=28.81 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=30.2
Q ss_pred ceeEecceeeccCcccccCCCCCHHHHHHHHHHHHhcCCCceEEeeCCC
Q psy5665 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHD 281 (344)
Q Consensus 233 ~~lf~GD~l~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~pgHg 281 (344)
..++|||..| ..+.++..+.+.+.++.+.+|. +++|=.
T Consensus 48 aTiiCGDnYf----------~en~eea~~~i~~mv~k~~pDv-~iaGPa 85 (431)
T TIGR01918 48 HTVVCGDSFF----------GENLEEAVARVLEMLKDKEPDI-FIAGPA 85 (431)
T ss_pred EEEEECchhh----------hhCHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 3788999754 4667778788888999999998 888765
Done!