RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5665
(344 letters)
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 320 bits (823), Expect = e-110
Identities = 141/299 (47%), Positives = 174/299 (58%), Gaps = 65/299 (21%)
Query: 42 LFRQLFDSISYTHTYILAD--KLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVH 99
LFRQLF++ S T TY+LAD K ++IDPV + DRD+ LI++LGL L Y +NTHVH
Sbjct: 4 LFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVH 63
Query: 100 ADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTI 159
A DH+TGTG +KT + V+S+ISK SG++AD+ + GD +
Sbjct: 64 A---------------------DHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKV 102
Query: 160 DFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPG 219
GD LEVRATPGHT GCVTYV TG+
Sbjct: 103 SIGDIYLEVRATPGHTAGCVTYV--------TGEGAD----------------------- 131
Query: 220 HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPA 279
MAFTGD +LIRGCGRTDFQ+G S +L++SV +IF+LP +YPA
Sbjct: 132 ---------QPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPA 182
Query: 280 HDYHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPANMKCGLQD 338
HDY GF STVGEE +NPRL + +E F IM+NL LS PK IDVAVPANM CGLQD
Sbjct: 183 HDYKGFEVSTVGEEMQHNPRLTK--DKETFKTIMSNLNLSYPKMIDVAVPANMVCGLQD 239
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.60A {Burkholderia pseudomallei}
Length = 298
Score = 265 bits (678), Expect = 1e-87
Identities = 85/314 (27%), Positives = 129/314 (41%), Gaps = 61/314 (19%)
Query: 42 LFRQLFDSISYTHTYILADKLSKECVIIDPVLE-----------QADRDVTLINQLGLTL 90
FD + T +Y+L D S EC +ID VL+ AD+ + + LG +
Sbjct: 6 TVEGFFDPATCTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARV 65
Query: 91 KYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQAD 150
++++ THVHADH++ +KT + H+T + + N G+Q D
Sbjct: 66 RWLLETHVHADHLSAAPYLKTRVGGEIAIGR-HVTRVQDVFGKLFNAG-PAFAHDGSQFD 123
Query: 151 IHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
+ GDT+ G + TPGHT C+TYV T+
Sbjct: 124 RLLDDGDTLALGALSIRAMHTPGHTPACMTYVV-------------------TEAHAAHD 164
Query: 211 GVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLI--RGCGRTDFQQGDSHKLFQSVRKEIF 268
AF GDTL + G R DF GD+ L++S+RK +
Sbjct: 165 ARD-------------------AAAFVGDTLFMPDYGTARCDFPGGDARSLYRSIRK-VL 204
Query: 269 SLPDHFRVYPAHDYHGFS-----HSTVGEEKLYNPRLGEQISEEKFVEIM--NNLKLSLP 321
SLP R+Y HDY STV +E N + E ++E+ FV + + L +P
Sbjct: 205 SLPPATRLYMCHDYQPNGRAIQYASTVADELRENVHIREGVTEDDFVAMRTARDATLDMP 264
Query: 322 KKIDVAVPANMKCG 335
+ +V NM+ G
Sbjct: 265 VLMLPSVQVNMRAG 278
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 186 bits (475), Expect = 2e-58
Identities = 47/262 (17%), Positives = 99/262 (37%), Gaps = 54/262 (20%)
Query: 42 LFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHAD 101
+R + + + ++ + ++ ++DP + A++ ++ G+TL ++ TH H D
Sbjct: 2 NYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGD-AEKIKQEVDASGVTLMQILLTHGHLD 60
Query: 102 HITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSI-ISKESGAQADIHVTHGDTID 160
H+ ++ Y + ++ + + + + D + GD +
Sbjct: 61 HVGAASELAQHYGVPVIGP--EKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVS 118
Query: 161 FGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGH 220
G+ L+V PGHT
Sbjct: 119 VGNVTLQVLHCPGHTP-------------------------------------------- 134
Query: 221 TDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAH 280
G V + ++ + +GD + G GR+DF +GD +L ++++++ L D P H
Sbjct: 135 --GHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGH 192
Query: 281 DYHGFSHSTVGEEKLYNPRLGE 302
ST+G E+L+NP L +
Sbjct: 193 GP----LSTLGYERLHNPFLQD 210
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 189 bits (480), Expect = 2e-56
Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 68/312 (21%)
Query: 38 SNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTH 97
SN F+Q +D +Y++ + + E +IIDP+ + + + ++ GLT+ + TH
Sbjct: 22 SNAMFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRD-LSSYIRVADEEGLTITHAAETH 80
Query: 98 VHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGD 157
+HAD +G + N +V + ++ V H D
Sbjct: 81 IHADFASGIRDVAIKLNANIYVSG--------------ESDDTLGYKNMPNHTHFVQHND 126
Query: 158 TIDFGDQQLEVRATPGHTDGCVTYV-------NQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
I G+ +L+V TPGHT ++++ Q F+GD + + GR D +
Sbjct: 127 DIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAV 186
Query: 211 GVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSL 270
V + G ++F+S+ I L
Sbjct: 187 KVEGSSEIGA------------------------------------KQMFKSIES-IKDL 209
Query: 271 PDHFRVYPAHDY--------HGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPK 322
PD+ +++P H ST+G EK N + +E F++ + + + + P
Sbjct: 210 PDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAF-SENNEATFIDKLISDQPAPPH 268
Query: 323 KIDVAVPANMKC 334
N
Sbjct: 269 HFAQMKKINQFG 280
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 182 bits (462), Expect = 1e-53
Identities = 66/322 (20%), Positives = 110/322 (34%), Gaps = 67/322 (20%)
Query: 38 SNGFLFRQLFDSISYTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTH 97
SN R+ +D +Y++ + + E +IDP + + + + GL + + TH
Sbjct: 1 SNAMYLRRFYDEGLAHASYLVGCQETGEACVIDPARD-VEPYLLTAKREGLRIVAALETH 59
Query: 98 VHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGD 157
+HAD ++G ++ V S+ A + GD
Sbjct: 60 IHADFVSGAREMADRAGAAICVSD-------------EGPPEWKSEYVKAYPHRLLKDGD 106
Query: 158 TIDFGDQQLEVRATPGHTDGCVTYV-------NQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
+ FG+ ++ V TPGHT V+Y+ F+GD + + GR D + +
Sbjct: 107 ELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVGDVGRPDLLERVA 166
Query: 211 GVPVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSL 270
G + ++F+S+RK +L
Sbjct: 167 GESGSSEALA------------------------------------RQMFRSLRK-FEAL 189
Query: 271 PDHFRVYPAHDYHGF--------SHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPK 322
PDH +V PAH STVG EKL N L + E+ FV+ + + P
Sbjct: 190 PDHVQVLPAHGAGSACGKALGAVPSSTVGYEKLVNWAL-QHKDEDAFVQALLAGQPEAPI 248
Query: 323 KIDVAVPANMKCGLQDGVPIEP 344
N P
Sbjct: 249 YFARMKLVNKVGPRLLAELGAP 270
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 136 bits (345), Expect = 4e-39
Identities = 46/246 (18%), Positives = 80/246 (32%), Gaps = 60/246 (24%)
Query: 53 THTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTM 112
+ Y++ + V+IDP E ++ + L GL ++ TH H DH+ +
Sbjct: 13 ENAYLVET--GEGPVLIDPGDE-PEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEA 69
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
+ ++H + + ++ G ++ G + +
Sbjct: 70 LDLPVYLHPLD-------LPLYEGAD-LAARAWGLAIPKPPLPVRPLEEGMRLFGFQ--- 118
Query: 173 GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGE 232
V PGH+ G V + +
Sbjct: 119 -----------------------------------------VLHLPGHSPGHVAFYDPEG 137
Query: 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGFSHSTVGE 292
F+GD L GR D D LF S+++ + SLP RV+P H +T+G
Sbjct: 138 AQVFSGDLLFRGSVGRYDLPGADPKALFASLKR-LLSLPPETRVHPGHGP----GTTLGL 192
Query: 293 EKLYNP 298
E NP
Sbjct: 193 EARTNP 198
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 115 bits (291), Expect = 1e-30
Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 76/230 (33%)
Query: 56 YILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMY-- 113
YIL D+ + ++DP +A+ + + + G L Y++NTH H DH G ++K Y
Sbjct: 15 YILHDEDTGTVGVVDPS--EAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGA 72
Query: 114 -VINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
VI + + D I G D+ + GD F ++ V TP
Sbjct: 73 KVIGSAMDKDRIPG----------------------IDMALKDGDKWMFAGHEVHVMDTP 110
Query: 173 GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGE 232
GHT G ++ G FTGDT+ CG+
Sbjct: 111 GHTKGHISLYFPGSRAIFTGDTMFSLSCGKL----------------------------- 141
Query: 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDY 282
F G +Q + S++K I SLPD +Y H+Y
Sbjct: 142 ---FEG-----------TPKQ-----MLASLQK-ITSLPDDTSIYCGHEY 171
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 113 bits (286), Expect = 9e-30
Identities = 50/227 (22%), Positives = 81/227 (35%), Gaps = 66/227 (29%)
Query: 56 YILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVI 115
Y++ D +KE I+DPV Q + V + G+ L V+ TH H DH G K+ +
Sbjct: 15 YLVIDDETKEAAIVDPV--QPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLE-- 70
Query: 116 NTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHT 175
+ ++ + +TH T+ G ++ ATP HT
Sbjct: 71 -------------------SGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHT 111
Query: 176 DGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMA 235
G + Y G
Sbjct: 112 SGHICYFVSKPG-----------------------------------------GSEPPAV 130
Query: 236 FTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDY 282
FTGDTL + GCG+ F +G + ++ +++ + + LP RVY H+Y
Sbjct: 131 FTGDTLFVAGCGK--FYEGTADEMCKALLEVLGRLPPDTRVYCGHEY 175
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 113 bits (283), Expect = 3e-29
Identities = 53/303 (17%), Positives = 91/303 (30%), Gaps = 65/303 (21%)
Query: 45 QLFDSISY-----THTYILADKLSKECVIIDPVLEQ-ADRDVTLINQLGLT---LKYVIN 95
QL D+I Y Y++ S+ +++D + Q I +LG +K ++N
Sbjct: 42 QLIDNIYYVGTDGIAVYVIKT--SQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILN 99
Query: 96 THVHADHITGTGKIKTMYVINTHVH---ADHITGTGKIKTMVNNVQSIISKESGAQADIH 152
TH H DH G +IK + G ++ + D
Sbjct: 100 THAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDE----KNEDLAFPAVKVDRA 155
Query: 153 VTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGV 212
V GD + GD L ATPGH+ GC ++ + + L
Sbjct: 156 VKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLF---------------- 199
Query: 213 PVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPD 272
+G L R G+ + G + K ++
Sbjct: 200 ----------------------FCSGTVALNRLVGQPTY-AGIVDDYRATFAK-AKAMKI 235
Query: 273 HFRVYPAHD--YHGFSHSTVGEEKLYNPRLGEQISEEKFVEIMNNLKLSLPKKIDVAVPA 330
+ H Y + ++ NP + + V +L K++ A
Sbjct: 236 D-VLLGPHPEVYGMQAKRAEMKDGAPNPFI----KPGELVTYATSLSEDFDKQLAKQTAA 290
Query: 331 NMK 333
K
Sbjct: 291 LEK 293
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 106 bits (268), Expect = 3e-27
Identities = 54/230 (23%), Positives = 75/230 (32%), Gaps = 80/230 (34%)
Query: 56 YILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVI 115
++L + CVI+DP +A + I + + + TH H DH+ G ++ +
Sbjct: 22 WVLTND-EGRCVIVDPG--EAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFP- 77
Query: 116 NTHV---HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
V G A V GDTI ++ + ATP
Sbjct: 78 QMTVYGPAETQDKG----------------------ATHLVGDGDTIRVLGEKFTLFATP 115
Query: 173 GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGE 232
GHT G V Y F GDTL GCGR
Sbjct: 116 GHTLGHVCYF--SRPYLFCGDTLFSGGCGRL----------------------------- 144
Query: 233 GMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDY 282
F G Q ++QS+ K I SLPD + AH+Y
Sbjct: 145 ---FEG-----------TPSQ-----MYQSLMK-INSLPDDTLICCAHEY 174
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 104 bits (260), Expect = 3e-26
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 16/176 (9%)
Query: 45 QLFDSISY-----THTYILADKLSKECVIIDPVLEQ-ADRDVTLINQLGLTL---KYVIN 95
++ ++ Y +Y++ + ++I+ LE I +LG K ++
Sbjct: 12 RIAGNLYYVGTDDLASYLIVT--PRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLI 69
Query: 96 THVHADHITGTGKIKTMY---VINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIH 152
+H H DH G+ IK + I GK N S + D
Sbjct: 70 SHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFT--QSTVDKV 127
Query: 153 VTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQG 208
+ G+ ++ G L TPGHT GC T+ + + ++I G +
Sbjct: 128 LHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKL 183
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 104 bits (262), Expect = 5e-26
Identities = 43/240 (17%), Positives = 70/240 (29%), Gaps = 67/240 (27%)
Query: 56 YILADKLSKECVIID------PVLE--QADRDVTLINQLGLTLKYVINTHVHADHITGTG 107
Y++ D + +D P+L + + T +++TH H DH G
Sbjct: 43 YLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNA 102
Query: 108 KIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLE 167
K+K + G + +S V GD + GD +E
Sbjct: 103 KLKAEL--EAMNSTVPVVVVGG------------ANDSIPAVTKPVREGDRVQVGDLSVE 148
Query: 168 VRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTY 227
V P HT G V Y Q
Sbjct: 149 VIDAPCHTRGHVLYKVQHPQHP-------------------------------------- 170
Query: 228 VNQGEGMAFTGDTLLIRGCGR----TDFQQGDS-HKLFQSVRKEIFSLPDHFRVYPAHDY 282
FTGDT+ I G G + + K++ + ++L ++P H+Y
Sbjct: 171 --NDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEY 228
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 88.3 bits (219), Expect = 3e-20
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 15/153 (9%)
Query: 52 YTHTYILADKLSKECVIIDP----VLEQADRDVTLINQLGLTLKYVINTHVHADHITGTG 107
T+TY++ ++ID + E + + ++ ++ TH H DH G G
Sbjct: 31 GTNTYLVGT--GPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIG 88
Query: 108 KIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLE 167
I +T + + + +G Q +++ GD I L
Sbjct: 89 DICKSINNDTTYCIKKLPRNPQRE---------EIIGNGEQQYVYLKDGDVIKTEGATLR 139
Query: 168 VRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGC 200
V TPGHTD + + + E F+GD +L G
Sbjct: 140 VLYTPGHTDDHMALLLEEENAIFSGDCILGEGT 172
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 86.7 bits (215), Expect = 7e-20
Identities = 30/160 (18%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 52 YTHTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKT 111
Y++ K V+ID + + D + +++L Y++ TH+H DHI ++
Sbjct: 19 IATVYVMCG--EKLTVMIDAGVSNSIADFSFLDKL----DYIVLTHLHIDHIGLLPELLQ 72
Query: 112 MYVINTHVH---ADHITGTGKIKTMVNNVQSIISKESG----------AQADIHVTHGDT 158
+Y V ++T +K + + + ++ I V +
Sbjct: 73 VYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEE 132
Query: 159 IDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIR 198
D G ++ + TPGH ++ + + FTGD+
Sbjct: 133 FDLGGYRMRLIYTPGHARHHMSVLV--DDFLFTGDSAGAY 170
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 83.1 bits (205), Expect = 2e-18
Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 18/181 (9%)
Query: 45 QLFDSISY-----THTYILADKLSKECVIIDPVLE-QADRDVTLINQLGLT---LKYVIN 95
Q+ D ++ V++D + A + + G+T L+ ++
Sbjct: 25 QIADHTWQIGTEDLTALLVQT--PDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILL 82
Query: 96 THVHADHITGTGKIKTMYVINTHVH---ADHITGTGKIKTMVNNVQSIISKESGAQADIH 152
+H HADH ++K + A + G + + A AD
Sbjct: 83 SHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYP----PANADRI 138
Query: 153 VTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGV 212
V G+ I G GHT G + +Q G+
Sbjct: 139 VMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPR 198
Query: 213 P 213
Sbjct: 199 Y 199
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 78.3 bits (193), Expect = 1e-16
Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 18/167 (10%)
Query: 56 YILADKLSKECVIIDPVLE-QADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIKT 111
++L +++ + A+ + + + Y + TH H DH +
Sbjct: 27 FLLRLG-EASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCP 85
Query: 112 MY----VINTHVHADHITGTGKIKTMVNNVQSIISKESG--------AQADIHVTHGDTI 159
V+ + ++ + + ++ E A V G+ +
Sbjct: 86 RLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWL 145
Query: 160 DFGDQ-QLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF 205
+ G + +L+V GH+D V + + F GD L +
Sbjct: 146 ELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGVW 192
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 74.1 bits (182), Expect = 7e-16
Identities = 36/244 (14%), Positives = 69/244 (28%), Gaps = 75/244 (30%)
Query: 53 THTYILADKLSKECVIIDPVLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTM 112
+ + + ++IDPV ++ D + LG + +++ T+ +DH+ +I
Sbjct: 24 FNGFAWIR--PEGNILIDPV-ALSNHDWKHLESLG-GVVWIVLTN--SDHVRSAKEIADQ 77
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
D ++ GD + G L+V
Sbjct: 78 TYTKIAGPVAEKENFP------------------IYCDRWLSDGDELVPG---LKVMELQ 116
Query: 173 G-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQG 231
G T G + + E TGD + G +
Sbjct: 117 GSKTPGELALLL-EETTLITGDLVRAYRAGGLE--------------------------- 148
Query: 232 EGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGFSHSTVG 291
D + + K+ SVR+ + +L V G+S G
Sbjct: 149 ---------------ILPDEKLMNKQKVVASVRR-LAALEKVEAVLVG---DGWSVFRDG 189
Query: 292 EEKL 295
++L
Sbjct: 190 RDRL 193
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 71.0 bits (174), Expect = 2e-14
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 23/147 (15%)
Query: 63 SKECVIIDP--VLEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIK--TMYVINTH 118
+ E +ID + ++ VT + G +K I++H H+D G + ++ +
Sbjct: 41 NAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASE 100
Query: 119 VHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRA-TPGHTDG 177
+ + + K+ G + G ++EV PGHT
Sbjct: 101 LTNELL------------------KKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPD 142
Query: 178 CVTYVNQGEGMAFTGDTLLIRGCGRTD 204
V + F G + G G
Sbjct: 143 NVVVWLPERKILFGGCFIKPYGLGNLG 169
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 71.2 bits (174), Expect = 4e-14
Identities = 24/177 (13%), Positives = 53/177 (29%), Gaps = 17/177 (9%)
Query: 44 RQLFDSISY---THTYILADKLSKECVIIDPVL-EQADRDVTLINQLGLTL---KYVINT 96
+++ + Y L +++D + + + I LG + ++ +
Sbjct: 44 LKVYGNTWYVGTCGISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFS 103
Query: 97 HVHADHITGTGKIKTMY---VINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHV 153
H H DH +++ V D + +T N + + + +
Sbjct: 104 HEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDPN--FEVAEPVAPVANIVTL 161
Query: 154 THGDTIDFGDQQLEVRATPGHTDGCVTYV-----NQGEGMAFTGDTLLIRGCGRTDF 205
+ G L A+PGHT G ++ D+L +
Sbjct: 162 ADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRY 218
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 67.1 bits (164), Expect = 8e-13
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 44/184 (23%)
Query: 52 YTHTYILADKLSKECVIIDP---------VLEQADRDVTLINQLGLTLK---YVINTHVH 99
+ Y+L E ++D LE + +LGL + ++ TH H
Sbjct: 21 TVNLYLLQGA--GEVALVDTALGTRAARGALELH------LAELGLCFQDVKTILLTHHH 72
Query: 100 ADHITGTGKIK----------------TMYVINTHVHADHITGT--------GKIKTMVN 135
DH +G + + A+ G ++ +
Sbjct: 73 PDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRE 132
Query: 136 NVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTL 195
V+ + Q + + G+ ++ ++L V TPGH DG + + EG+ GD L
Sbjct: 133 TVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDAL 192
Query: 196 LIRG 199
L +
Sbjct: 193 LEKV 196
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 64.0 bits (156), Expect = 3e-12
Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 19/152 (12%)
Query: 63 SKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKIKTMYVINTHV 119
K V+ID ++ I + G + I TH H D G
Sbjct: 35 DKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGG-------------- 80
Query: 120 HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT-PGHTDGC 178
++ G SI++KE+ +A + + G + +V GHT
Sbjct: 81 -LEYFGKIGAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADN 139
Query: 179 VTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
V E + G + +
Sbjct: 140 VVVWFPKEKVLVGGCIIKSADSKDLGYIGEAY 171
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 64.0 bits (156), Expect = 4e-12
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 19/152 (12%)
Query: 63 SKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKIKTMYVINTHV 119
K V+ D Q + I + L + V TH H D + T+
Sbjct: 39 KKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIK-TYA 97
Query: 120 HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT-PGHTDGC 178
A + K+ A + + G G ++ V GHT
Sbjct: 98 TA--------------KTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADN 143
Query: 179 VTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
V + G + + + +
Sbjct: 144 VVVWFPKYNVLDGGCLVKSNSATDLGYIKEAN 175
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 61.7 bits (150), Expect = 3e-11
Identities = 22/162 (13%), Positives = 45/162 (27%), Gaps = 21/162 (12%)
Query: 53 THTYILADKLSKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKI 109
++ I+ + + ++D Q + V + + I H H D I G G +
Sbjct: 37 SNGMIVINN--HQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYL 94
Query: 110 KTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVR 169
+ +A+ +T + ++ + T T+ L+
Sbjct: 95 QRK---GVQSYANQMTI------------DLAKEKGLPVPEHGFTDSLTVSLDGMPLQCY 139
Query: 170 AT-PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
GH + E + F G L
Sbjct: 140 YLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDAD 181
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 59.4 bits (144), Expect = 2e-10
Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 27/166 (16%)
Query: 53 THTYILADKLSKECVIIDP--VLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKI 109
++ I+ D E ++ID + + I + GL + I+TH H D + G
Sbjct: 68 SNGLIVRDA--DELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGG---- 121
Query: 110 KTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQA-----DIHVTHGDTIDFGDQ 164
+ A + T + + +++ +G + + GD + FG
Sbjct: 122 ------VDVLRAAG------VATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGPV 169
Query: 165 QLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
++ H+ + + F G + +
Sbjct: 170 EV-FYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADAN 214
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 58.6 bits (142), Expect = 3e-10
Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 19/152 (12%)
Query: 63 SKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKIKTMYVINTHV 119
SK V++D + + ++ + + VI TH HAD I G +K + H
Sbjct: 49 SKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIK-AHS 107
Query: 120 HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT-PGHTDGC 178
A + K + + + FG+ ++E GHT+
Sbjct: 108 TA--------------LTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDN 153
Query: 179 VTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
+ + G +
Sbjct: 154 IVVWLPQYNILVGGCLVKSTSAKDLGNVADAY 185
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 53.2 bits (128), Expect = 2e-08
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 83 INQLGLT---LKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQS 139
++LG++ + V+ THVH DHI + + N + + T + V
Sbjct: 64 FSELGISPDDITDVLFTHVHLDHIFNSVLFE-----NATFYVHEVYKTKNYLSFGTIVGR 118
Query: 140 IISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYVNQGEG---MAFTGDTL 195
I SK + ++ + G+ D++++V TP H ++++ E + TGD
Sbjct: 119 IYSKVISSWKNVVLLKGEE-SLFDEKVKVFHTPWHAREHLSFLLDTENAGRVLITGDIT 176
Score = 43.9 bits (104), Expect = 2e-05
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 34/132 (25%)
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
V+ THVH DHI + + A +V ++
Sbjct: 76 DVLFTHVHLDHIFNSVLFE----------------NATFYV----------HEVYKTKNY 109
Query: 173 GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGE 232
+ G + + ++ + +L++G + V V TP H ++++ E
Sbjct: 110 -LSFGTIVGRIYSKVISSWKNVVLLKG----EESLFDEKVKVFHTPWHAREHLSFLLDTE 164
Query: 233 G---MAFTGDTL 241
+ TGD
Sbjct: 165 NAGRVLITGDIT 176
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 53.4 bits (128), Expect = 2e-08
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 53 THTYILADKLSKECVIIDP--VLEQADRDVTLI-NQLGLTLKYVINTHVHADHITGTGKI 109
++ I+ D +++D +Q + + I ++ L + + TH H D + G +
Sbjct: 75 SNGLIVRDG--GRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDAL 132
Query: 110 KTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVR 169
I T+ +A + A+ V +FG ++
Sbjct: 133 HAA-GIATYANA------LSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKV-FY 184
Query: 170 ATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
PGHT +T G +AF G +
Sbjct: 185 PGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDAD 225
Score = 41.9 bits (98), Expect = 1e-04
Identities = 28/182 (15%), Positives = 46/182 (25%), Gaps = 34/182 (18%)
Query: 100 ADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTI 159
+ I + + TH H D + G + A + + +
Sbjct: 102 LNWIKQEINLPVALAVVTHAHQDKMGGMDALH--------------AAGIATYA-NALSN 146
Query: 160 DFGDQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPG 219
Q+ V A T +V F + G PG
Sbjct: 147 QLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPG------------------PG 188
Query: 220 HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQ-GDSHKLFQSVRKEIFSLPDHFRVYP 278
HT +T G +AF G + D+ S R + P +
Sbjct: 189 HTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVM 248
Query: 279 AH 280
+H
Sbjct: 249 SH 250
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 49.4 bits (118), Expect = 4e-07
Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 12/156 (7%)
Query: 63 SKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKIKTM--YVINT 117
+ II E A+ I ++ L + VINT+ H D G KT+ ++ T
Sbjct: 34 TDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVAT 93
Query: 118 HVHADHIT-GTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT-PGHT 175
+ D G I + + D + + + HT
Sbjct: 94 QMTYDLQKSQWGSIVNFTRQGNNKYPNLEKSLPDT--VFPGDFNLQNGSIRAMYLGEAHT 151
Query: 176 DG-CVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS 210
Y E + + +L G F
Sbjct: 152 KDGIFVYFPA-ERVLYGNC-ILKENLGNMSFANRTE 185
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 49.4 bits (118), Expect = 5e-07
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 91 KYVINTHVHADHITGTGKIKTMYV-INTHVHADHITGTGKIKTMVNNVQSIISKESGAQA 149
INTH H D G K M + + K + + +++ +
Sbjct: 70 VVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRI 129
Query: 150 D----------IHVTHGDTIDFGDQQLEVRAT-PGHTDGCVTYVNQGEGMAFTGDTL 195
+ G F ++ +EV P H+ V + + F G +
Sbjct: 130 LSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMI 186
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 49.5 bits (118), Expect = 8e-07
Identities = 28/194 (14%), Positives = 60/194 (30%), Gaps = 37/194 (19%)
Query: 26 NYSSVHILENAFSNGFL--FRQLFDS-----ISYTHTYILADKLSKECVIIDPVLEQADR 78
++ I + + G L + + +Y + Y++ + +ID
Sbjct: 2 KAAAKRISDGVYWTGVLDWDLRNYHGYTLQGTTY-NAYLVCGD--EGVALIDNS------ 52
Query: 79 DVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQ 138
++L ++ + G ++ Y+I HV DH ++
Sbjct: 53 YPGTFDELMARVEDALQQ-------VGMERVD--YIIQNHVEKDHSGVLVELHRRFPEAP 103
Query: 139 SIISK-----------ESGAQADIHVTHGDTIDFGDQQLEVRATP-GHTDGCVTYVNQGE 186
++ + V GD +D G + L TP H + + +
Sbjct: 104 IYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDED 163
Query: 187 GMAFTGDTLLIRGC 200
G+ F+ D C
Sbjct: 164 GILFSNDAFGQHLC 177
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 45.8 bits (109), Expect = 6e-06
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 5/138 (3%)
Query: 63 SKECVIID--PVLEQADRDVTLINQL-GLTLKYVINTHVHADHITGTGKIKTMYV-INTH 118
+K ++ + A LI ++ + VINT+ H D G K++ + +
Sbjct: 31 AKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVST 90
Query: 119 VHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVR-ATPGHTDG 177
+ + + + + + +V H + ++ A P HT
Sbjct: 91 RQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPD 150
Query: 178 CVTYVNQGEGMAFTGDTL 195
+ E + + G L
Sbjct: 151 GIFVYFPDEQVLYGGCIL 168
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 46.0 bits (109), Expect = 9e-06
Identities = 20/172 (11%), Positives = 51/172 (29%), Gaps = 24/172 (13%)
Query: 44 RQLFDSISYTH------TYILADKLSKECVIIDPVLEQADRDV--TLINQLGL-TLKYVI 94
+ F + + Y++ D+ + + D V + ++ + + + + Y++
Sbjct: 20 SRDFHGYTLSPMGTTYNAYLVEDE---KTTLFDTVKAEYKGELLCGIASVIDPKKIDYLV 76
Query: 95 NTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVT 154
H+ DH + + I + + + + V
Sbjct: 77 IQHLELDHAGALPALIEAC------QPEKIFTSSLGQKAMESHFHYKDWPV-----QVVK 125
Query: 155 HGDTIDFGDQQLEVRATPG-HTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF 205
HG+T+ G + + T H + E + + D F
Sbjct: 126 HGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERF 177
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 45.6 bits (108), Expect = 1e-05
Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 25/172 (14%)
Query: 44 RQLFDS------ISYTHTYILADKLSKECVIIDPVLEQADRDV--TLINQLGL-TLKYVI 94
++F SY ++Y + D+ +ID V + + L +KYV+
Sbjct: 27 VRIFHGYHTDEGSSY-NSYFIDDE---CPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVV 82
Query: 95 NTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVT 154
H DH +K Y T+ T K + + + + + V
Sbjct: 83 MNHAEGDHA---SSLKDHYHKFTNAT---FVCTKKCQEHLKILYGMEKATW-----LIVD 131
Query: 155 HGDTIDFGDQQLEVRATP-GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDF 205
T+ G + L+ P H + + F+ D +
Sbjct: 132 DKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRW 183
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 43.7 bits (103), Expect = 4e-05
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 12/129 (9%)
Query: 77 DRDVTLINQL---GLT---LKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130
+ L +L GL+ + V+ +H+H DH +I
Sbjct: 85 ASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFAT 144
Query: 131 KTMVN-NVQSIISK--ESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDG-CVTYVN--Q 184
+ + I + D+ + + GH G V +
Sbjct: 145 GDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEK 204
Query: 185 GEGMAFTGD 193
G D
Sbjct: 205 QPGFLLVSD 213
Score = 37.5 bits (87), Expect = 0.004
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 27/131 (20%)
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATP 172
V+ +H+H DH + I ++ A A F
Sbjct: 106 TVVLSHLHNDHAGCV----EYFGKSRLIAHEDEFATA--------VRYFATGDHSSPYIV 153
Query: 173 GHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPV-RATPGHTDG-CVTYVN- 229
+ + + + + GV + GH G V
Sbjct: 154 KDIEAWLATPRNWDLVGRDEREREL-----------APGVNLLNFGTGHASGMLGLAVRL 202
Query: 230 -QGEGMAFTGD 239
+ G D
Sbjct: 203 EKQPGFLLVSD 213
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 42.0 bits (99), Expect = 1e-04
Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 18/155 (11%)
Query: 59 ADKLSKECVIIDPVLEQADRDVTLINQLGLT---LKYVINTHVHADHITGTGKIK--TMY 113
D + K P+ E+ + LGL + V+N+H H DH G
Sbjct: 55 YDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYFPHAKKI 114
Query: 114 VINTHV----------HADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGD 163
+ V H + + + + E +A+ D
Sbjct: 115 CHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTFEGIDGDVDLA 174
Query: 164 QQLEVRATPGHTDG-CVTYVNQGEG--MAFTGDTL 195
+ +++ +TPGH+ G V + FT D
Sbjct: 175 RGVKLISTPGHSIGHYSLLVEFPRRKPILFTIDAA 209
Score = 40.0 bits (94), Expect = 6e-04
Identities = 34/185 (18%), Positives = 55/185 (29%), Gaps = 30/185 (16%)
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKE-----SGAQADIHVTHGDTIDFGDQQLE 167
V+N+H H DH G + + I + Q H+ + D +
Sbjct: 91 VVVNSHFHFDHCGGN----KYFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEA 146
Query: 168 VRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDG-CVT 226
AT +G + E GD GV + +TPGH+ G
Sbjct: 147 RGATAQLLEGTTRANSTFE--GIDGDV------------DLARGVKLISTPGHSIGHYSL 192
Query: 227 YVNQGEG--MAFTGDTLLIRGCGRTDFQQG--DSHKLFQSVRKEIFSL--PDHFRVYPAH 280
V + FT D + T Q + +++ L + +H
Sbjct: 193 LVEFPRRKPILFTIDAAYTQKSLETLCQAAFHIDPVAGVNSMRKVKKLAEDHGAELMYSH 252
Query: 281 DYHGF 285
D F
Sbjct: 253 DMDNF 257
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 41.7 bits (98), Expect = 2e-04
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 25/161 (15%)
Query: 44 RQLFDSISYTH-------TYILADKLSKECVIIDPVLEQADRDV--TLINQLGL-TLKYV 93
+ F +++ Y++ D + ++D V E ++ L L Y+
Sbjct: 20 IRYFHGPAFSTHRGTTYNAYLIVDD---KTALVDTVYEPFKEELIAKLKQIKDPVKLDYL 76
Query: 94 INTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHV 153
+ H +DH I + H+ T + + S I V
Sbjct: 77 VVNHTESDHAGAFPAIMELC------PDAHVLCTQRAFDSLKAHYSHIDFNY-----TIV 125
Query: 154 THGDTIDFGDQQLEVRATPG-HTDGCVTYVNQGEGMAFTGD 193
G ++ G + L P H + E + D
Sbjct: 126 KTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPND 166
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 40.9 bits (96), Expect = 3e-04
Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 27/136 (19%)
Query: 113 YVINTHVHADHITG-TGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRAT 171
+ TH+H DH+ G + N A + + + Q +A
Sbjct: 142 EIYITHMHPDHVGGLMVGEQLAFPN------------AVVRADQKEADFWLSQTNLDKAP 189
Query: 172 PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGS----GVPVRATPGHTDGCVTY 227
++G G+ G + G+ A+ GHT G TY
Sbjct: 190 DDE--------SKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALASHGHTPGHTTY 241
Query: 228 V--NQGEGMAFTGDTL 241
V +QG+ +A GD +
Sbjct: 242 VVESQGQKLALLGDLI 257
Score = 40.1 bits (94), Expect = 7e-04
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 92 YVINTHVHADHI---TGTGKI---KTMYVINTHVHADHITGTGKIKTMVNNVQSIISKES 145
+ TH+H DH+ ++ + + AD + ++ K +
Sbjct: 142 EIYITHMHPDHVGGLMVGEQLAFPNAVVRAD-QKEADFWLSQTNLDKAPDDESKGFFKGA 200
Query: 146 GAQADIHVTHG--DTIDFGDQ---QLEVRATPGHTDGCVTYV--NQGEGMAFTGDTL 195
A + +V G ++ A+ GHT G TYV +QG+ +A GD +
Sbjct: 201 MASLNPYVKAGKFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLI 257
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 40.6 bits (95), Expect = 5e-04
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 28/161 (17%)
Query: 44 RQLFDSISYTH------TYILADKLSKECVIIDPVLEQADRDV--TLINQLGL-TLKYVI 94
+ F+++ Y++ KL+ V+ID ++ L + + ++I
Sbjct: 37 IRYFEAVWEIPEGISYNAYLV--KLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHII 94
Query: 95 NTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVT 154
H DH + + A + ++ + K+
Sbjct: 95 VNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRL-LEGFYGIKDVTVVKD---------- 143
Query: 155 HGDTIDFGDQQLEVRATPG--HTDGCVTYVNQGEGMAFTGD 193
G+ + G ++ + TP D VTY+ +G+ F+ D
Sbjct: 144 -GEEREIGGKKFKFVMTPWLHWPDTMVTYL---DGILFSCD 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 7e-04
Identities = 49/314 (15%), Positives = 86/314 (27%), Gaps = 109/314 (34%)
Query: 72 VLEQADRDVTLINQLGLTLKYVI--NTHVHADHITGTG--KIKTMY-VINTHVHADHITG 126
V +AD + G ++ ++ N H G +I+ Y + D
Sbjct: 1645 VWNRADN--HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 127 TGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQ----------LEV-RA---TP 172
T KI +N + + + + T F Q E ++ P
Sbjct: 1703 TEKIFKEINEHSTSYTFR-SEKGLLSATQ-----F--TQPALTLMEKAAFEDLKSKGLIP 1754
Query: 173 ------GHTDG------CVTYVNQGEGMAFTGDTLLI---RGCGRTDFQQGGSGVPVRAT 217
GH+ G + + M+ + + RG Q A
Sbjct: 1755 ADATFAGHSLGEYAALASL-----ADVMSIE-SLVEVVFYRG----MTMQ-------VAV 1797
Query: 218 PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVY 277
P G Y GM + + Q + + V K L V
Sbjct: 1798 PRDELGRSNY-----GMIAINPGRVAASFSQEALQY-----VVERVGKRTGWL-----VE 1842
Query: 278 PAHDYHGFSHSTVGEEKLYNPRLGEQI-------SEEKFVEIMNNLKLSLPKKIDVAVPA 330
+ YN +Q + + ++N +KL +KID+
Sbjct: 1843 IVN---------------YNVE-NQQYVAAGDLRALDTVTNVLNFIKL---QKIDII--- 1880
Query: 331 NMKCGLQDGVPIEP 344
LQ + +E
Sbjct: 1881 ----ELQKSLSLEE 1890
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 38.2 bits (89), Expect = 0.002
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 77 DRDVTLINQL---GLT---LKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKI 130
+ ++N L G L Y+I++H+H DH G G + I +
Sbjct: 82 TEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFT---------NTPIIVQRTEY 132
Query: 131 KTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDG-CVTYVNQGEG-- 187
+ ++ + + + + + GD +++ TPGH+ G ++ +
Sbjct: 133 EAALHR-EEYMKECILPHLNYKIIEGDYEVVPG--VQLLYTPGHSPGHQSLFIETEQSGS 189
Query: 188 MAFTGD 193
+ T D
Sbjct: 190 VLLTID 195
Score = 35.1 bits (81), Expect = 0.020
Identities = 27/184 (14%), Positives = 50/184 (27%), Gaps = 49/184 (26%)
Query: 113 YVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVR-AT 171
Y+I++H+H DH G G I V Q+ E A
Sbjct: 103 YIISSHLHFDHAGGNGAFT----------------NTPIIV----------QRTEYEAAL 136
Query: 172 PGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDG-CVTYVNQ 230
+ GD ++ GV + TPGH+ G ++
Sbjct: 137 HREEYMKECILPHLNYKIIEGDYEVV------------PGVQLLYTPGHSPGHQSLFIET 184
Query: 231 GEG--MAFTGDTL-----LIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYH 283
+ + T D F + + +++ + + ++ HD
Sbjct: 185 EQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKK--EKPIIFFGHDIE 242
Query: 284 GFSH 287
Sbjct: 243 QEKS 246
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 37.7 bits (88), Expect = 0.003
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 23/106 (21%)
Query: 113 YVINTHVHADHITG--TGKIKTMVNNVQSIISKE--------------SGAQADIHVTHG 156
YV+ TH+H DH G + N ++ ++ + +
Sbjct: 103 YVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSN 162
Query: 157 --DTIDFGDQ---QLEVRATPGHTDGCVTYV--NQGEGMAFTGDTL 195
+ + ++++ + GH+ G +QG+ GD
Sbjct: 163 KLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIF 208
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase
fold; 2.70A {Pseudomonas SP}
Length = 668
Score = 37.7 bits (86), Expect = 0.005
Identities = 30/257 (11%), Positives = 57/257 (22%), Gaps = 22/257 (8%)
Query: 67 VIIDPVL--EQADRDVTLINQ--LGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHAD 122
V+ID + E A + L Q + V+ +H H DH G I +
Sbjct: 145 VLIDTLTTAETARAALDLYFQHRPKKPIVAVVYSHSHIDHFGGARGIIDEADVKAGKVKV 204
Query: 123 --HITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVT 180
+ + +++ Q+ + V G T+ T
Sbjct: 205 FAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGL----FKTTATNATNT 260
Query: 181 YVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDT 240
V + + G + + T D
Sbjct: 261 LVAPNVLIEKPYERH---------TVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADN 311
Query: 241 LLIRGCGRTDF---QQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGFSHSTVGEEKLYN 297
+ D+ + + D V L +
Sbjct: 312 APPAMHNLLTPRGAEVRDAKAWAGYIDASLEKYGDRTDVLIQQHNWPVWGGDKVRTYLAD 371
Query: 298 PRLGEQISEEKFVEIMN 314
R + + +MN
Sbjct: 372 QRDMYAFLNNRALNLMN 388
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 34.7 bits (80), Expect = 0.028
Identities = 32/205 (15%), Positives = 54/205 (26%), Gaps = 43/205 (20%)
Query: 22 SSARNYSSVHILENAFSNGFL--FRQLFDSISYTH---TY----ILADKLSKECVIIDPV 72
S R+ + I N R F+ T I DK IIDP
Sbjct: 4 SKPRDVQVLPIATNTKVLRARSWSRLRFEIEYALERGTTSNSYVIEGDKT----AIIDPP 59
Query: 73 LEQADRDVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKT 132
+ + L+ +N K+ YVI H + I +
Sbjct: 60 ------VESFMKIYLEALQQTVNLK----------KLD--YVILGHFSPNRIPTFKALLE 101
Query: 133 MVNNVQSIISKESGAQADIH----------VTHGDTIDFGD-QQLEVRATPG-HTDGCVT 180
+ + + S + + +T+D G L+ P +
Sbjct: 102 LAPQITFVCSLPAAGDLRAAFPDDNLNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLC 161
Query: 181 YVNQGEGMAFTGDTLLIRGCGRTDF 205
+ + +T CG F
Sbjct: 162 TYDVQTQILYTDKIFGAHICGDDVF 186
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 34.6 bits (80), Expect = 0.032
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 90 LKYVINTHVHADHITGTGKIKTMYVINTHVHAD----HITGTGKIKTMVNNVQSIISKES 145
+ V+ +H H DH+ G ++ +I + I G + +++ +
Sbjct: 76 IDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTHEPHTK- 134
Query: 146 GAQADIHVTHGDTIDFGDQQLEVRATP-GHTDGCVTYV--NQGEGMAFTGDT 194
I +T+ G + H C + + ++ D+
Sbjct: 135 ----GIPYNPEETLQIGP--FSISFLKTVHPVTCFAMRITAGNDIVVYSADS 180
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 33.8 bits (76), Expect = 0.092
Identities = 29/256 (11%), Positives = 71/256 (27%), Gaps = 19/256 (7%)
Query: 67 VIIDP--VLEQADRDVTLINQL--GLTLKYVINTHVHADHITGTGKIKTMYVINTHVHAD 122
+++D A L+++ ++ VI +H HADH G + + +
Sbjct: 135 IVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQI 194
Query: 123 HITGTGKIKTMVNNVQSIISKESGAQADIHVTHGDTIDFGDQQLEVRATPGHTDGCVTYV 182
+ NV + + A Q+++ G G ++ +
Sbjct: 195 IAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLP---KGPQGQVDMAIGKGLARGPLSLL 251
Query: 183 NQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTDGCVTYVNQGEGMAFTGDTLL 242
+ G+ L++ G FQ + + + + ++
Sbjct: 252 APTRLIEGEGEDLVLDGV-PFTFQNTP--------GTESPAEMNIWLPRQKALLMAENVV 302
Query: 243 IRGCGRTDF---QQGDSHKLFQSVRKEIFSLPDHFRVYPAHDYHGFSHSTVGEEKLYNPR 299
+ D+ + + + + V A + E L R
Sbjct: 303 GTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPRWGNAEIVEVLEKQR 362
Query: 300 LGEQISEEKFVEIMNN 315
++ + + N
Sbjct: 363 DLYGYLHDQTLHLANQ 378
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 33.2 bits (76), Expect = 0.11
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 96 THVHADHITGT-GKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIHVT 154
TH+H DH+ G G + + + G IK + ++ I
Sbjct: 62 THMHGDHVYGLPGLLGSRSFQGGE-DELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEI 120
Query: 155 HGDTIDFGDQQLEVRATP 172
+ F D Q V A
Sbjct: 121 EEGIV-FEDDQFIVTAVS 137
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 32.0 bits (72), Expect = 0.28
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 64 KECVIIDPVLEQADRDVTLINQLGLT-LKYVINTHVHADHITGTGKIKTMYVINTHVHAD 122
+E + DR + +L + L +++ TH H+DHI ++ + Y ++
Sbjct: 51 REGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKK 110
Query: 123 HITGTGKIKTMVNNVQSI------ISKESGAQADIHVTHGDT-IDFGDQQLEVRATPGHT 175
+ + + + E+G ++T GD FGD +++ T
Sbjct: 111 YSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENET 170
Query: 176 DG 177
D
Sbjct: 171 DS 172
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 96 THVHADHITGT-GKIKTMYVINTHVHADHITGTGKIKTMVNNVQSIISKESGAQADIH-V 153
+H+H DH+ G G + + + + I G I+ V I + +I +
Sbjct: 64 SHLHGDHLFGLPGLLCSRSMSGI-IQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEI 122
Query: 154 THGDTIDFGDQQLEVRATP 172
G+ +D G +V A P
Sbjct: 123 GAGEILDDGL--RKVTAYP 139
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin,
tetramer, montreal- bacterial structural genomics
initiative, BSGI; 2.41A {Escherichia coli} SCOP:
b.82.1.23
Length = 354
Score = 29.7 bits (66), Expect = 1.6
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 35/134 (26%)
Query: 163 DQQLEVRATPGHTDGCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGGSGVPVRATPGHTD 222
+ + YVN G G + G +G + R TD
Sbjct: 237 HDLTRLGDADEWDGYKMRYVNPVTG----GYPMPSMGAFLQLLPKGFASRVAR----TTD 288
Query: 223 GCVTYVNQGEGMAFTGDTLLIRGCGRTDFQQGDSHKLFQSVRKEIFSLPDHFRVYPAHDY 282
+ +V +G G G+ F D IF +P +
Sbjct: 289 STIYHVVEGSGQVIIGNE-------TFSFSAKD-----------IFVVP---------TW 321
Query: 283 HGFSHSTVGEEKLY 296
HG S T + L+
Sbjct: 322 HGVSFQTTQDSVLF 335
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 28.3 bits (64), Expect = 2.9
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GG+L + W +T A AHCV SAR +
Sbjct: 31 GGSLIRQGWVMT-A-AHCVDSARTW 53
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 28.5 bits (64), Expect = 3.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 114 VINTHVHADHITGTGKIKTMVNNVQSII 141
+ TH HADHI G ++T V + ++
Sbjct: 103 AVYTHPHADHIHGIDDLRTYVVDNGRLM 130
Score = 28.1 bits (63), Expect = 4.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 93 VINTHVHADHITG 105
+ TH HADHI G
Sbjct: 103 AVYTHPHADHIHG 115
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI,
protein struc initiative, midwest center for structural
genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens
str} SCOP: d.90.1.1
Length = 200
Score = 28.1 bits (63), Expect = 3.2
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 265 KEIFSLPDHFRV-------YPAHDYHGFSHSTVGEEKLYNPR--LGEQISEEKF 309
E +PD F+V + E ++ + R L + E +F
Sbjct: 144 VEKLDIPDGFKVEAGVAIGTLTDK--SILPDDLAEREVPSKRVPLADVAFEGRF 195
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 28.0 bits (63), Expect = 3.6
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 81 TLINQLGLT-LKYVINTHVHADHITG 105
L ++ + + TH H DH+ G
Sbjct: 59 DLADRWSPGSFQQFLLTHYHMDHVQG 84
Score = 27.3 bits (61), Expect = 6.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 114 VINTHVHADHITG 126
+ TH H DH+ G
Sbjct: 72 FLLTHYHMDHVQG 84
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 28.7 bits (64), Expect = 3.6
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 283 HGFSHSTVGEEKLYNPRLGEQISEEKFV 310
HG+ G E +YN G+++ + F
Sbjct: 1062 HGYQSR--GFEVMYNGHTGKKLMAQIFF 1087
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 27.9 bits (63), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GGTL W +T A AHC+SS+R Y
Sbjct: 31 GGTLVDQSWVLT-A-AHCISSSRTY 53
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GG+L W +T A HC+S++R Y
Sbjct: 29 GGSLIAPDWVVT-A-GHCISTSRTY 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 5.1
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 8 KVQWTITFALAHCVSS------ARNYSSVHILENAFSNGFLFRQLFDSISYTHTYILADK 61
K+ W + + + Y + + + SI +L K
Sbjct: 183 KIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 62 LSKECVII-DPVLEQADRDVTLINQLGLTLKYVINT 96
+ C+++ V ++ N L+ K ++ T
Sbjct: 242 PYENCLLVLLNV-----QNAKAWNAFNLSCKILLTT 272
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.3 bits (63), Expect = 5.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 303 QISEEKFVEIMNNL 316
+ E F+E MN L
Sbjct: 1714 NVLESSFLERMNTL 1727
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 27.6 bits (62), Expect = 5.2
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 107 GKIKTMYVINTHVHADHITG 126
K +++ TH H DHI G
Sbjct: 39 YAFKYVFL--THGHVDHIAG 56
Score = 27.6 bits (62), Expect = 5.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 96 THVHADHITG 105
TH H DHI G
Sbjct: 47 THGHVDHIAG 56
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 27.5 bits (62), Expect = 5.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GGTL + W +T A AHCV +
Sbjct: 31 GGTLIRQNWVMT-A-AHCVDRELTF 53
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 27.4 bits (61), Expect = 6.5
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNYSSVHIL 33
GG + + + +T A C RN +
Sbjct: 80 GGVIIRENFVLT-T-AKCSLLHRNITVKTYF 108
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 27.4 bits (61), Expect = 6.7
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNYSSVHIL 33
GG + + + +T A C RN +
Sbjct: 121 GGVIIRENFVLT-T-AKCSLLHRNITVKTYF 149
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen),
serine proteinase, C-terminal peptidase; 2.35A {Bos
taurus} SCOP: b.47.1.2
Length = 251
Score = 27.2 bits (61), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GGTL +T A AHC+S+ Y
Sbjct: 44 GGTLITPNHVLT-A-AHCISNTLTY 66
>1azz_A Collagenase; complex (serine protease/inhibitor), serine
protease, inhibitor, complex, protease-substrate
interactions, collagen; 2.30A {Celuca pugilator} SCOP:
b.47.1.2
Length = 226
Score = 27.1 bits (61), Expect = 7.0
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GG+L +W +T A AHC+ A
Sbjct: 27 GGSLISPEWILT-A-AHCMDGAGFV 49
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 27.4 bits (60), Expect = 7.1
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 93 VINTHVHADHITGTGKIKTMYVINTHVHADHI 124
++ DH TG ++
Sbjct: 86 IVLLDSQIDHTTGLLSLREGCPHQVWCTDMVH 117
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1210
Score = 27.5 bits (61), Expect = 7.5
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 283 HGFSHSTVGEEKLYNPRLGEQISEEKFV 310
HGF G E +Y+ G ++ + F+
Sbjct: 1051 HGFQSR--GFEVMYHGHTGRKLVAQVFL 1076
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 27.5 bits (61), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 96 THVHADHITG 105
TH+H DH G
Sbjct: 59 THLHGDHFFG 68
Score = 27.5 bits (61), Expect = 7.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 117 THVHADHITG 126
TH+H DH G
Sbjct: 59 THLHGDHFFG 68
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.5 bits (61), Expect = 8.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 303 QISEEKFVEIMNNL 316
I E F+E MN L
Sbjct: 1677 NILETAFLERMNTL 1690
>3m8l_A Capsid protein; FCV-5 capsid, icosahedral virus; 3.40A {Feline
calicivirus} PDB: 3m8l_B
Length = 534
Score = 27.4 bits (60), Expect = 9.1
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 79 DVTLINQLGLTLKYVINTHVHADHITGTGKIKTMYVINTHVHADHITGTGKIKTMV 134
D + + T+ + +T H T T + M + + + + V
Sbjct: 129 DARQVEPVIFTIPDLRSTLYHLMSDTDTTSLVIMIYNDLINPYANDSNSSGCIVTV 184
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease
FO endonuclease, DNA, DNA-packaging motor, hydrolase;
2.02A {Enterobacteria phage P22}
Length = 211
Score = 26.6 bits (58), Expect = 9.2
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 268 FSLPDHFRVYPAHDYHGFSHSTVGEEKLYNP 298
F PDHF V A D+ G++H + ++
Sbjct: 20 FECPDHFYVIDAQDF-GWNHPQAHIQLWWDK 49
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 26.7 bits (60), Expect = 9.3
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 3 GGTLKKVQWTITFALAHCVSSARNY 27
GGT+ + +T A AHC+ A+ +
Sbjct: 28 GGTILSEFYILT-A-AHCLYQAKRF 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.411
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,350,697
Number of extensions: 322790
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 128
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)