Query psy5667
Match_columns 79
No_of_seqs 114 out of 1601
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:31:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.8 1.6E-20 5.3E-25 126.2 10.9 74 4-78 9-83 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.8 3.6E-19 1.2E-23 119.5 9.4 73 6-79 34-110 (293)
3 2f69_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 99.6 4.7 52 27-79 2-56 (261)
4 2f69_A Histone-lysine N-methyl 99.3 7.3E-12 2.5E-16 83.4 5.8 54 6-60 4-60 (261)
5 2eqj_A Metal-response element- 48.9 15 0.0005 19.4 2.4 39 17-55 21-59 (66)
6 2xdp_A Lysine-specific demethy 46.5 42 0.0014 19.6 4.9 30 42-71 73-102 (123)
7 2ovs_A L0044, ORF10; global re 45.1 11 0.00039 22.0 1.7 40 16-57 6-54 (118)
8 2qqr_A JMJC domain-containing 40.1 54 0.0018 19.0 5.0 13 44-56 74-86 (118)
9 3lyg_A NTF2-like protein of un 22.9 1.1E+02 0.0038 17.8 3.4 14 65-78 97-110 (120)
10 1a9x_B Carbamoyl phosphate syn 21.5 1.9E+02 0.0063 19.8 4.9 31 16-47 4-34 (379)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.84 E-value=1.6e-20 Score=126.20 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=63.8
Q ss_pred cCceEeCCeeeeeEEEcCCCCEEEEEEecCCeEeeeEEEEcCCCC-EEEEEEeCCeEEeeEEEEecCCCEEEEEEe
Q psy5667 4 KDEEEYPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDHT-RYDGTFHNGLCSGLGVMRFPDGANSTYSDI 78 (79)
Q Consensus 4 ~~~~~~~~~~g~G~~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G~-~y~G~f~~~~~~G~G~~~~~~G~~Y~G~~~ 78 (79)
.+........|.|++.++||.+|+|+| +++++||.|++++++|. +|+|+|+++++||.|+++++||++|+|+|.
T Consensus 9 ~G~~~~g~~~G~G~~~~~~G~~Y~G~~-~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~~~ 83 (293)
T 1h3i_A 9 EGYYVDDALQGQGVYTYEDGGVLQGTY-VDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGEVN 83 (293)
T ss_dssp CEEEETTEEEEEEEEECTTSCEEEEEE-ETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEECC
T ss_pred EEEEECCEeeEEEEEEECCCCEEEEEE-ECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEEEe
Confidence 333444444578999999999999999 89999999999999999 899999999999999999999999999986
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.79 E-value=3.6e-19 Score=119.53 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=66.2
Q ss_pred ceEeCCeeeeeEEEcCCCC-EEEEEEecCCeEeeeEEEEcCCCCEEEEEEe-CCeEEee-EEEEecCCC-EEEEEEeC
Q psy5667 6 EEEYPGVVQHGSFKYDDGT-LYIGDWNERGQKHGMGHMKLPDHTRYDGTFH-NGLCSGL-GVMRFPDGA-NSTYSDIR 79 (79)
Q Consensus 6 ~~~~~~~~g~G~~~~~~g~-~Y~G~~~~~~~~~G~G~~~~~~G~~y~G~f~-~~~~~G~-G~~~~~~G~-~Y~G~~~~ 79 (79)
......+.|.|++.++||. +|+|+| +++++||.|+++++||.+|+|+|+ ++++||. |+++++||. .|+|.|..
T Consensus 34 ~~~~g~~~G~G~~~~~~G~~~y~G~~-~~g~~~G~G~~~~~~G~~y~G~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~ 110 (293)
T 1h3i_A 34 TYVDGELNGPAQEYDTDGRLIFKGQY-KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFID 110 (293)
T ss_dssp EEETTEEEEEEEEECSSSCEEEEEEE-ETTEECSEEEEECTTSCEEEEECCTTSCSCEEEEEEECTTSSEEEEEEEET
T ss_pred EEECCEEEeCEEEEECCCCEEEEEEE-ECCEEEeeEEEEECCCCEEEEEEeECCeEeCCeEEEEECCCCEEEEEEEEC
Confidence 3334444489999999999 899999 999999999999999999999999 9999999 999999999 69999973
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.55 E-value=3.2e-15 Score=99.61 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=37.3
Q ss_pred EEEEecCCeEeeeEEEEcCCCCEEEEEEe-CCeEEee-EEEEecCCCE-EEEEEeC
Q psy5667 27 IGDWNERGQKHGMGHMKLPDHTRYDGTFH-NGLCSGL-GVMRFPDGAN-STYSDIR 79 (79)
Q Consensus 27 ~G~~~~~~~~~G~G~~~~~~G~~y~G~f~-~~~~~G~-G~~~~~~G~~-Y~G~~~~ 79 (79)
.|+| +++++||.|++++|||.+|+|+|. ++.+||. |+|++|||++ |+|+|+.
T Consensus 2 ~g~~-~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~ 56 (261)
T 2f69_A 2 AMGY-KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFID 56 (261)
T ss_dssp ----------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEET
T ss_pred Ccee-cCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeC
Confidence 3778 888888888888888888888888 8888888 8888888888 8888863
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.26 E-value=7.3e-12 Score=83.41 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=45.5
Q ss_pred ceEeCCeeeeeEEEcCCCCEEEEEEec-CCeEeee-EEEEcCCCCE-EEEEEeCCeEE
Q psy5667 6 EEEYPGVVQHGSFKYDDGTLYIGDWNE-RGQKHGM-GHMKLPDHTR-YDGTFHNGLCS 60 (79)
Q Consensus 6 ~~~~~~~~g~G~~~~~~g~~Y~G~~~~-~~~~~G~-G~~~~~~G~~-y~G~f~~~~~~ 60 (79)
....+...|.|++.|+||.+|+|+| . ++.+||+ |++++||+.+ |+|+|.++.+.
T Consensus 4 ~~~~~~~~G~g~~~~~dG~~y~G~~-~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 4 GYKDNIRHGVCWIYYPDGGSLVGEV-NEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp -------CCCEEEECTTSCEEEECC-CTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred eecCCceecceEEEeCCCCEEEEEE-eeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 4566778899999999999999999 8 9999999 9999999999 99999999885
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=48.88 E-value=15 Score=19.37 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=22.7
Q ss_pred EEEcCCCCEEEEEEecCCeEeeeEEEEcCCCCEEEEEEe
Q psy5667 17 SFKYDDGTLYIGDWNERGQKHGMGHMKLPDHTRYDGTFH 55 (79)
Q Consensus 17 ~~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G~~y~G~f~ 55 (79)
...|.||..|.|...+=++..|...+.+-|++++=-.|+
T Consensus 21 LA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 21 LARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp EEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 345677888887763223334666666666665544443
No 6
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=46.49 E-value=42 Score=19.60 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=15.4
Q ss_pred EEcCCCCEEEEEEeCCeEEeeEEEEecCCC
Q psy5667 42 MKLPDHTRYDGTFHNGLCSGLGVMRFPDGA 71 (79)
Q Consensus 42 ~~~~~G~~y~G~f~~~~~~G~G~~~~~~G~ 71 (79)
+.|.||..|.+.|..-...=.=+..+.||+
T Consensus 73 V~W~DG~~y~a~f~g~~~~~~YtV~FeDgs 102 (123)
T 2xdp_A 73 VKWPDGKLYGAKYFGSNIAHMYQVEFEDGS 102 (123)
T ss_dssp EECTTSCEEEEEEEEEEEEEEEEEECTTSC
T ss_pred EEcCCCCEEeEEEeeeeeEEEEEEEECCCC
Confidence 346666666666655433333334455544
No 7
>2ovs_A L0044, ORF10; global regulator protein type three secretion system, gene regulation, ligand binding protein; HET: PG4; 1.90A {Escherichia coli} PDB: 3e3c_A*
Probab=45.08 E-value=11 Score=22.00 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=26.9
Q ss_pred eEEEcCCCCEEEEEEecCC-eEeeeEEEEcCCCC--------EEEEEEeCC
Q psy5667 16 GSFKYDDGTLYIGDWNERG-QKHGMGHMKLPDHT--------RYDGTFHNG 57 (79)
Q Consensus 16 G~~~~~~g~~Y~G~~~~~~-~~~G~G~~~~~~G~--------~y~G~f~~~ 57 (79)
|.+.+.|| +|.-.| +.+ +..|.|++...+|. .|.|....+
T Consensus 6 ~~~mMkDG-iY~v~F-~t~~~~~GeGvVvv~~G~v~GGD~~~~Y~G~~~~~ 54 (118)
T 2ovs_A 6 GSMIMKDG-IYSIIF-ISNEDSCGEGILIKNGNMITGGDIASVYQGVLSED 54 (118)
T ss_dssp EGGGSCSE-EEEEEE-EETTCCEEEEEEEESSSEEEEECSSEEEEEECCSS
T ss_pred CCchhcCc-EEEEEE-ECCCcCcccEEEEEECCEEeCCCceEEEeeEeccC
Confidence 33445566 677788 666 55688888888755 577776554
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=40.13 E-value=54 Score=19.00 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.3
Q ss_pred cCCCCEEEEEEeC
Q psy5667 44 LPDHTRYDGTFHN 56 (79)
Q Consensus 44 ~~~G~~y~G~f~~ 56 (79)
|.||..|.+.|..
T Consensus 74 W~DG~~y~a~f~g 86 (118)
T 2qqr_A 74 WTDGQVYGAKFVA 86 (118)
T ss_dssp CTTSCEEEEEEEE
T ss_pred cCCCCEeeeEEec
Confidence 4445555555443
No 9
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=22.85 E-value=1.1e+02 Score=17.78 Aligned_cols=14 Identities=7% Similarity=-0.023 Sum_probs=8.3
Q ss_pred EEecCCCEEEEEEe
Q psy5667 65 MRFPDGANSTYSDI 78 (79)
Q Consensus 65 ~~~~~G~~Y~G~~~ 78 (79)
+++.+|.+|++.|.
T Consensus 97 f~f~~g~I~~er~~ 110 (120)
T 3lyg_A 97 FKFEGDQIYEERWF 110 (120)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEE
Confidence 55666666666553
No 10
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=21.49 E-value=1.9e+02 Score=19.82 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=22.9
Q ss_pred eEEEcCCCCEEEEEEecCCeEeeeEEEEcCCC
Q psy5667 16 GSFKYDDGTLYIGDWNERGQKHGMGHMKLPDH 47 (79)
Q Consensus 16 G~~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G 47 (79)
..+.+.||.+|.|.- .-....-.|.+++.++
T Consensus 4 ~~l~ledG~~~~g~~-~g~~~~~~gEvvf~T~ 34 (379)
T 1a9x_B 4 ALLVLEDGTQFHGRA-IGATGSAVGEVVFNTS 34 (379)
T ss_dssp EEEEETTSCEEEEEE-CSCSEEEEEEEEEECC
T ss_pred eEEEECCCCEEEEEE-eCCCCCEEEEEEEeCC
Confidence 567888999999987 6666666677777654
Done!