Query psy5667
Match_columns 79
No_of_seqs 114 out of 1601
Neff 7.9
Searched_HMMs 13730
Date Fri Aug 16 23:31:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qqra2 b.34.9.1 (A:956-1011) 73.8 3.4 0.00025 19.9 5.0 12 19-30 11-22 (56)
2 d1a9xb1 c.8.3.1 (B:1502-1652) 47.3 21 0.0015 20.1 4.9 32 15-47 3-34 (151)
3 d2f69a1 b.76.2.1 (A:116-193) H 44.9 17 0.0012 18.3 4.3 44 17-60 5-50 (78)
4 d2psba1 c.153.1.1 (A:13-308) U 17.7 29 0.0021 21.3 1.8 15 65-79 246-260 (296)
5 d2cx1a2 d.17.6.4 (A:1-90) Hypo 11.5 72 0.0052 15.6 1.9 23 49-74 55-77 (90)
6 d2jn4a1 b.173.1.1 (A:1-66) Unc 8.5 84 0.0061 15.1 1.5 11 63-73 36-46 (66)
7 d1u58a2 d.19.1.1 (A:8-144) Imm 8.4 90 0.0066 16.9 1.7 19 46-65 28-46 (137)
8 d2gc9a1 b.60.1.6 (A:1-178) P-c 8.0 1.1E+02 0.0079 17.5 2.0 13 63-75 16-28 (178)
9 d2cr5a1 d.15.1.2 (A:8-103) UBX 7.2 1.5E+02 0.011 14.2 2.7 13 65-77 21-33 (96)
10 d2g3ra1 b.34.9.1 (A:1485-1537) 6.9 1.3E+02 0.0098 13.3 3.4 27 22-49 14-40 (53)
No 1
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.78 E-value=3.4 Score=19.90 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=7.2
Q ss_pred EcCCCCEEEEEE
Q psy5667 19 KYDDGTLYIGDW 30 (79)
Q Consensus 19 ~~~~g~~Y~G~~ 30 (79)
.|+||.+|...|
T Consensus 11 rW~DG~~y~A~f 22 (56)
T d2qqra2 11 RWTDGQVYGAKF 22 (56)
T ss_dssp ECTTSCEEEEEE
T ss_pred EcCCCCEEEEEE
Confidence 456666666655
No 2
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=47.27 E-value=21 Score=20.10 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=24.6
Q ss_pred eeEEEcCCCCEEEEEEecCCeEeeeEEEEcCCC
Q psy5667 15 HGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDH 47 (79)
Q Consensus 15 ~G~~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G 47 (79)
...+.+.||.++.|.. ......-.|.+++..+
T Consensus 3 ~a~L~LedG~~f~G~~-~g~~~~~~GE~vFnT~ 34 (151)
T d1a9xb1 3 SALLVLEDGTQFHGRA-IGATGSAVGEVVFNTS 34 (151)
T ss_dssp EEEEEETTSCEEEEEE-CSCSEEEEEEEEEECC
T ss_pred cEEEEeCCCCEEEEEe-cCCCcceeEEEEEEec
Confidence 3567888999999987 6767777888887754
No 3
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.92 E-value=17 Score=18.34 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=34.0
Q ss_pred EEEcCCCCEEEEEEecCCeEeeeEE-EEcCCCC-EEEEEEeCCeEE
Q psy5667 17 SFKYDDGTLYIGDWNERGQKHGMGH-MKLPDHT-RYDGTFHNGLCS 60 (79)
Q Consensus 17 ~~~~~~g~~Y~G~~~~~~~~~G~G~-~~~~~G~-~y~G~f~~~~~~ 60 (79)
-+.+++|-.-.|+.+.++.+.|.-+ +.+||+. .+-|+|.++.+-
T Consensus 5 w~y~pdGGslvG~vne~gEmtGd~IAYvYPD~~talyGsF~dgemi 50 (78)
T d2f69a1 5 WIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 50 (78)
T ss_dssp EEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred EEEeCCCCEEEeeecCCCccccceEEEEcCCCeEEEEEEeecccee
Confidence 3578899999998866777888765 5688875 578999988764
No 4
>d2psba1 c.153.1.1 (A:13-308) Uncharacterized protein YerB {Bacillus subtilis [TaxId: 1423]}
Probab=17.70 E-value=29 Score=21.30 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=11.1
Q ss_pred EEecCCCEEEEEEeC
Q psy5667 65 MRFPDGANSTYSDIR 79 (79)
Q Consensus 65 ~~~~~G~~Y~G~~~~ 79 (79)
+.+.||..+++.|.|
T Consensus 246 ~vl~dG~~~~~tW~r 260 (296)
T d2psba1 246 LLFQHGNVIETDWKQ 260 (296)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEeCCEEEEEEEEc
Confidence 677777777777764
No 5
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525, N-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=11.54 E-value=72 Score=15.62 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=12.8
Q ss_pred EEEEEEeCCeEEeeEEEEecCCCEEE
Q psy5667 49 RYDGTFHNGLCSGLGVMRFPDGANST 74 (79)
Q Consensus 49 ~y~G~f~~~~~~G~G~~~~~~G~~Y~ 74 (79)
.|+=--.++.+ +.|.|+||.+|-
T Consensus 55 eyeiitvdgvp---clfewsdgriyp 77 (90)
T d2cx1a2 55 EYEIITVDGVP---CLFEWSDGRIYP 77 (90)
T ss_dssp EEEEEEETTEE---EEEECTTSCEEE
T ss_pred ceEEEEecCcc---EEEEecCCcCcc
Confidence 34433444433 457788887773
No 6
>d2jn4a1 b.173.1.1 (A:1-66) Uncharacterized protein FixU (NifT) {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=8.48 E-value=84 Score=15.08 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=5.5
Q ss_pred EEEEecCCCEE
Q psy5667 63 GVMRFPDGANS 73 (79)
Q Consensus 63 G~~~~~~G~~Y 73 (79)
|.++.+||..|
T Consensus 36 G~vtL~NGw~l 46 (66)
T d2jn4a1 36 GKVTLANGWQL 46 (66)
T ss_dssp SEEEETTSCEE
T ss_pred CEEEeCCccEE
Confidence 44455555544
No 7
>d1u58a2 d.19.1.1 (A:8-144) Immunomodulatory protein m144, alpha-1 and alpha-2 domains {Murine cytomegalovirus [TaxId: 10366]}
Probab=8.35 E-value=90 Score=16.93 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=11.8
Q ss_pred CCCEEEEEEeCCeEEeeEEE
Q psy5667 46 DHTRYDGTFHNGLCSGLGVM 65 (79)
Q Consensus 46 ~G~~y~G~f~~~~~~G~G~~ 65 (79)
||..|.| |.++..|+.+++
T Consensus 28 DGEsFvg-ySn~~iH~~~~W 46 (137)
T d1u58a2 28 DGEAFVG-YSNNKTHGIGRW 46 (137)
T ss_dssp TTEEEEE-EETTEEEECSSS
T ss_pred ccceeee-ecCCceeeeeEe
Confidence 6666665 466667766543
No 8
>d2gc9a1 b.60.1.6 (A:1-178) P-coumaric acid decarboxylase, pdc {Lactobacillus plantarum [TaxId: 1590]}
Probab=8.02 E-value=1.1e+02 Score=17.50 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=9.3
Q ss_pred EEEEecCCCEEEE
Q psy5667 63 GVMRFPDGANSTY 75 (79)
Q Consensus 63 G~~~~~~G~~Y~G 75 (79)
=+|++.||..||=
T Consensus 16 ~iYtYdngW~YE~ 28 (178)
T d2gc9a1 16 FIYTYDNGWEYEW 28 (178)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEccCCcEEEE
Confidence 3577778888874
No 9
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.19 E-value=1.5e+02 Score=14.23 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=8.0
Q ss_pred EEecCCCEEEEEE
Q psy5667 65 MRFPDGANSTYSD 77 (79)
Q Consensus 65 ~~~~~G~~Y~G~~ 77 (79)
++++||.+.+..|
T Consensus 21 iRlPdG~r~~r~F 33 (96)
T d2cr5a1 21 LRCPNGRVLRRRF 33 (96)
T ss_dssp EECTTSCEEEEEE
T ss_pred EECCCCCEEEEEE
Confidence 5666666666555
No 10
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.87 E-value=1.3e+02 Score=13.28 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=13.2
Q ss_pred CCCEEEEEEecCCeEeeeEEEEcCCCCE
Q psy5667 22 DGTLYIGDWNERGQKHGMGHMKLPDHTR 49 (79)
Q Consensus 22 ~g~~Y~G~~~~~~~~~G~G~~~~~~G~~ 49 (79)
|+-.|.|.. ..+.-.|.=++.+.+|..
T Consensus 14 n~yfysg~i-~rd~g~~r~rl~fdd~~e 40 (53)
T d2g3ra1 14 NGYFYSGKI-TRDVGAGKYKLLFDDGYE 40 (53)
T ss_dssp TCCEEEEEE-EEEEETTEEEEEETTSCE
T ss_pred CCEEEeeEE-ehhcCCceEEEEecCCcE
Confidence 444566655 444444444444555443
Done!