RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5667
(79 letters)
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A*
1muf_A
Length = 293
Score = 47.0 bits (112), Expect = 5e-08
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 15 HGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDHTR-YDGTFHNGLCSGLGVMRFPDG 70
G + Y+DG + G + + G+ +G D + G + + + G+ + +PDG
Sbjct: 20 QGVYTYEDGGVLQGTYVD-GELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDG 75
Score = 45.1 bits (107), Expect = 2e-07
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 20 YDDGTLYIGDWNERGQKHGMGHMKLPDHTRYDGTFHNGLCSGLGVMRFPDG 70
+ DG+ G + G G D GT+ +G +G DG
Sbjct: 2 FFDGSTLEGYY-VDDALQGQGVYTYEDGGVLQGTYVDGELNGPAQEYDTDG 51
Score = 37.8 bits (88), Expect = 9e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 15 HGSFKYDDGTL-YIGDWNERGQKHGMGHMKLPDHTRYDGTFH-NGLCSGLGVMRFPDGAN 72
DG L + G + + +HG+ + PD G + +G +G +
Sbjct: 43 PAQEYDTDGRLIFKGQY-KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDER 101
Query: 73 STY 75
+
Sbjct: 102 TAL 104
Score = 37.8 bits (88), Expect = 1e-04
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 15 HGSFKYDDGTLYIGDWNERGQKHGMGHMKL--PDHTRYDGTFHNG 57
Y DG +G+ NE G+ G + + T G F +G
Sbjct: 67 VCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDG 111
Score = 29.3 bits (66), Expect = 0.073
Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 5/74 (6%)
Query: 9 YPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMK---LPDHTRYDGTFHNGLCSGLGVM 65
YP K+ DG + G G +P ++ Y C +
Sbjct: 97 YPDERTALYGKFIDGEMIEGKLAT-LMSTEEGRPHFELMPGNSVYHFDKSTSSCISTNAL 155
Query: 66 RFPDGANSTYSDIR 79
PD S +
Sbjct: 156 -LPDPYESERVYVA 168
Score = 28.9 bits (65), Expect = 0.10
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 4/61 (6%)
Query: 15 HGSFKYD---DGTLYIGDWNERGQKHGMGHMKLPDHTRYDGTFHNGLCSGLGVMRFPDGA 71
G ++ ++Y D + + + L S G F A
Sbjct: 126 EGRPHFELMPGNSVYHFDKST-SSCISTNALLPDPYESERVYVAESLISSAGEGLFSKVA 184
Query: 72 N 72
Sbjct: 185 V 185
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7;
SET domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 30.5 bits (68), Expect = 0.034
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 15 HGSFKYDDGTLYIGDWNERGQKHGMGHM-KLPDH-TRYDGTFHNGLC 59
Y DG +G+ NE G+ G PD T G F +G
Sbjct: 13 VCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGEM 59
Score = 23.9 bits (51), Expect = 6.2
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 34 GQKHGMGHMKLPDHTRYDGTFH-NGLCSGLGVM-RFPDG 70
+HG+ + PD G + +G +G + +PD
Sbjct: 8 NIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDE 46
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 27.2 bits (61), Expect = 0.50
Identities = 3/12 (25%), Positives = 7/12 (58%), Gaps = 1/12 (8%)
Query: 59 CSGLGVM-RFPD 69
C+ G + + P+
Sbjct: 340 CTSSGTIGKNPE 351
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine
biosynthesis, structural genomics, NYSGXRC, PSI; HET:
LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP:
b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Length = 434
Score = 26.3 bits (59), Expect = 0.85
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 14 QHGSFKYDDGTLYIGD 29
+ + + DG +I
Sbjct: 3 GNDTVEIKDGRFFIDG 18
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 26.0 bits (58), Expect = 1.2
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 59 CSGLGVMR 66
CS GV+R
Sbjct: 325 CSATGVIR 332
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein;
enolase, Mg ION, PSI-2, NYSGXRC, structural genomics;
2.90A {Rubrobacter xylanophilus dsm 9941}
Length = 410
Score = 25.3 bits (56), Expect = 2.5
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 12 VVQHGSFKYDDGTLYIGD-------WNERG-QKHGMGHMKLPDHTRYDGTFHN 56
V G +G + + + +E +H +P R +G H+
Sbjct: 356 VRYPGGPVIREGHIELTEEPGLGLELDEEAAFEHRHEKGGVPFFGRTEGHHHH 408
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 25.1 bits (55), Expect = 2.5
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 17 SFKYDDGTLY--IGDWNERGQKHGMGHM 42
++DDG + G +E G G G
Sbjct: 247 LHRHDDGNFFPGSGAVDEVGAGSGEGFN 274
>1sp8_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase; 2.00A {Zea
mays} SCOP: d.32.1.3 d.32.1.3
Length = 418
Score = 25.3 bits (54), Expect = 2.6
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 6 EEEYPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDHTRYD 51
+ VQH + DD + + R G M P YD
Sbjct: 275 DHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYD 320
>1no7_A Major capsid protein; novel fold, alpha plus beta, viral capsid
protein, folding nucleus, viral protein; 2.90A {Human
herpesvirus 1} SCOP: e.48.1.1
Length = 604
Score = 24.6 bits (53), Expect = 4.2
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 37 HGMGHMKLPDHTRYDGTFHNGLCSGLGVMRFPDGANSTY 75
G + +DG H G+ N Y
Sbjct: 466 AGANTASTTNMRIFDGALHAGILLMAPQHLDHTIQNGDY 504
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 24.7 bits (53), Expect = 4.7
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 51 DGTFHNGLCSGLGVMRFP 68
+ LC GV +P
Sbjct: 172 NCGDDRMLCRMKGVNSYP 189
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct
genomics, riken spring-8 center; 1.99A {Aquifex
aeolicus}
Length = 420
Score = 24.0 bits (53), Expect = 7.0
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 15 HGSFKYDDGTLYIGD 29
+ +Y DG L+I
Sbjct: 8 NPYLEYRDGELFIEG 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.139 0.447
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,346,918
Number of extensions: 69301
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 26
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)