Query psy5669
Match_columns 116
No_of_seqs 119 out of 1066
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:33:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iir_A Glycosyltransferase GTF 97.4 0.00022 7.4E-09 55.1 5.1 52 2-56 357-408 (415)
2 2p6p_A Glycosyl transferase; X 97.1 0.00086 2.9E-08 50.8 6.1 47 2-50 335-381 (384)
3 1rrv_A Glycosyltransferase GTF 97.0 0.00039 1.3E-08 53.6 3.2 50 2-55 358-408 (416)
4 4amg_A Snogd; transferase, pol 96.6 0.0018 6.3E-08 48.9 4.2 41 4-46 358-398 (400)
5 2iya_A OLEI, oleandomycin glyc 96.3 0.0087 3E-07 45.9 6.6 48 2-51 377-424 (424)
6 3h4t_A Glycosyltransferase GTF 96.2 0.0054 1.8E-07 47.3 4.8 46 2-51 340-385 (404)
7 3rsc_A CALG2; TDP, enediyne, s 94.5 0.093 3.2E-06 39.8 6.5 45 2-48 369-413 (415)
8 2vch_A Hydroquinone glucosyltr 94.5 0.021 7.1E-07 45.5 2.9 56 2-59 417-478 (480)
9 2yjn_A ERYCIII, glycosyltransf 94.2 0.09 3.1E-06 40.6 6.0 46 2-49 391-436 (441)
10 3tsa_A SPNG, NDP-rhamnosyltran 93.8 0.087 3E-06 39.6 5.0 45 2-48 344-388 (391)
11 3ia7_A CALG4; glycosysltransfe 93.5 0.19 6.5E-06 37.5 6.4 45 2-48 354-398 (402)
12 4fzr_A SSFS6; structural genom 91.2 0.23 8E-06 37.4 4.4 41 2-44 356-396 (398)
13 2iyf_A OLED, oleandomycin glyc 89.8 0.45 1.5E-05 36.2 4.9 47 2-50 355-401 (430)
14 3oti_A CALG3; calicheamicin, T 88.2 0.78 2.7E-05 34.5 5.2 42 5-48 356-397 (398)
15 3otg_A CALG1; calicheamicin, T 88.2 0.58 2E-05 35.1 4.4 44 2-47 364-407 (412)
16 2c1x_A UDP-glucose flavonoid 3 86.9 0.51 1.7E-05 37.2 3.6 31 2-32 400-433 (456)
17 2pq6_A UDP-glucuronosyl/UDP-gl 86.6 0.62 2.1E-05 36.8 3.9 30 2-31 427-459 (482)
18 2acv_A Triterpene UDP-glucosyl 84.5 1.3 4.5E-05 34.8 4.9 29 2-30 413-442 (463)
19 3hbf_A Flavonoid 3-O-glucosylt 84.5 0.9 3.1E-05 36.1 3.9 31 2-32 402-435 (454)
20 2jo1_A Phospholemman; FXYD1, N 81.5 3.8 0.00013 24.8 5.0 30 64-93 10-39 (72)
21 2jp3_A FXYD domain-containing 79.8 3.1 0.00011 24.9 4.1 30 64-93 11-40 (67)
22 3s2u_A UDP-N-acetylglucosamine 71.4 6.1 0.00021 29.7 4.9 46 2-49 312-357 (365)
23 2hac_A T-cell surface glycopro 63.7 9.8 0.00033 19.6 3.2 19 67-85 5-23 (33)
24 2dvz_A BUGE, putative exported 57.9 21 0.0007 26.7 5.5 45 2-48 257-301 (314)
25 2zxe_G FXYD10, phospholemman-l 57.0 3.5 0.00012 25.1 0.9 26 65-90 14-39 (74)
26 4g9j_C Synthetic peptide, seri 48.8 5.4 0.00018 19.0 0.6 10 106-115 2-11 (26)
27 2b7e_A PRE-mRNA processing pro 45.9 10 0.00035 22.0 1.6 17 3-19 23-40 (59)
28 2qpq_A Protein BUG27; alpha/be 45.8 23 0.00079 26.2 4.1 40 2-43 244-283 (301)
29 2gek_A Phosphatidylinositol ma 44.8 51 0.0017 23.9 5.8 47 2-49 337-383 (406)
30 2jp3_A FXYD domain-containing 44.4 47 0.0016 19.7 4.4 31 67-98 11-41 (67)
31 2f5x_A BUGD; periplasmic bindi 43.5 29 0.001 25.8 4.4 40 2-43 253-294 (312)
32 3oy2_A Glycosyltransferase B73 40.9 89 0.003 22.8 6.7 47 2-49 344-390 (413)
33 2izx_A CAMP-dependent protein 40.0 39 0.0013 17.4 3.8 24 25-48 16-39 (41)
34 2kqz_A Proteasomal ubiquitin r 39.9 18 0.00061 24.8 2.4 23 8-30 75-97 (155)
35 2jjm_A Glycosyl transferase, g 37.3 57 0.0019 23.8 5.1 47 2-48 338-384 (394)
36 2kog_A Vesicle-associated memb 36.3 87 0.003 20.2 6.1 27 36-62 46-73 (119)
37 3okp_A GDP-mannose-dependent a 35.8 63 0.0021 23.2 5.0 49 2-50 332-380 (394)
38 2kyg_A CAMP-dependent protein 35.2 56 0.0019 17.7 3.8 25 25-49 24-48 (50)
39 2k7r_A Primosomal protein DNAI 33.7 3.1 0.00011 26.5 -2.2 31 1-31 1-31 (106)
40 2v8i_A Pectate lyase; periplas 33.1 42 0.0014 27.5 3.8 28 4-31 66-93 (543)
41 1v4v_A UDP-N-acetylglucosamine 32.0 38 0.0013 24.6 3.3 46 2-49 322-367 (376)
42 3m48_A General control protein 31.6 56 0.0019 16.6 3.0 30 1-30 2-32 (33)
43 3c48_A Predicted glycosyltrans 30.4 61 0.0021 23.9 4.2 43 2-45 379-421 (438)
44 3g36_A Protein DPY-30 homolog; 30.4 62 0.0021 18.2 3.3 27 21-50 22-48 (55)
45 1eum_A Ferritin 1; ECFTNA, met 28.9 78 0.0027 20.9 4.2 55 3-57 5-72 (165)
46 2hy6_A General control protein 28.6 65 0.0022 16.5 3.3 30 1-30 3-33 (34)
47 2iw1_A Lipopolysaccharide core 28.5 1E+02 0.0035 21.9 5.1 21 2-22 325-345 (374)
48 2x6q_A Trehalose-synthase TRET 27.9 83 0.0028 23.1 4.6 45 2-46 367-411 (416)
49 1uo4_A General control protein 24.7 79 0.0027 16.2 3.0 30 1-30 3-33 (34)
50 4f9k_A CAMP-dependent protein 24.6 92 0.0032 19.6 3.6 26 24-49 57-82 (95)
51 2izy_A CAMP-dependent protein 24.6 97 0.0033 17.1 3.6 24 25-48 19-42 (54)
52 2lnm_A Protein TIC 40, chlorop 24.5 53 0.0018 18.6 2.4 18 10-27 39-56 (62)
53 3c3g_A Alpha/beta peptide with 24.2 66 0.0022 16.4 2.3 30 1-30 2-32 (33)
54 2oxj_A Hybrid alpha/beta pepti 24.1 76 0.0026 16.2 2.6 30 1-30 3-33 (34)
55 2r60_A Glycosyl transferase, g 21.8 1.5E+02 0.0051 22.4 5.1 45 2-46 412-456 (499)
56 3aql_A Poly(A) polymerase; tra 21.5 99 0.0034 24.1 4.1 39 8-46 361-400 (415)
57 3c3f_A Alpha/beta peptide with 21.2 81 0.0028 16.1 2.3 30 1-30 3-33 (34)
58 2bni_A General control protein 21.0 97 0.0033 15.8 2.8 30 1-30 3-33 (34)
59 2kr0_A Proteasomal ubiquitin r 20.5 64 0.0022 25.5 2.8 46 6-51 299-355 (411)
60 3hd7_A Vesicle-associated memb 20.3 79 0.0027 19.3 2.7 7 64-70 64-70 (91)
61 2k21_A Potassium voltage-gated 20.1 1.8E+02 0.0061 19.4 4.5 18 38-55 22-39 (138)
No 1
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.36 E-value=0.00022 Score=55.15 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=41.2
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCc
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRGAPHLK 56 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~g~~~l~ 56 (116)
+.+.++|.++ +|++|++++.+++..+.+ .++.+.+++|+|.+++++|++|+-
T Consensus 357 ~~l~~~i~~l-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~ 408 (415)
T 1iir_A 357 DSLSAALATA-LTPETHARATAVAGTIRT--DGAAVAARLLLDAVSREKPTVSAL 408 (415)
T ss_dssp HHHHHHHHHH-TSHHHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHH-cCHHHHHHHHHHHHHHhh--cChHHHHHHHHHHHHhcccHHHHh
Confidence 4688999999 999999999999998864 579999999999999999988753
No 2
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=97.12 E-value=0.00086 Score=50.77 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHR 50 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~ 50 (116)
+.+.++|.++++|++|++++.+++..+++.| +.+.+++|+|..+.|.
T Consensus 335 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 381 (384)
T 2p6p_A 335 EAIADSCQELQAKDTYARRAQDLSREISGMP--LPATVVTALEQLAHHH 381 (384)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHhhhc
Confidence 4688999999999999999999999999987 8999999999998773
No 3
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.00 E-value=0.00039 Score=53.60 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=38.5
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHhCCCCCC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSI-EYVIAHRGAPHL 55 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wi-E~v~r~~g~~~l 55 (116)
+.+.++|.++ +|++|++++.+++..+.+ .++. .+++|+ |++++++|++|+
T Consensus 358 ~~l~~~i~~l-~~~~~~~~~~~~~~~~~~--~~~~-~~~~~i~e~~~~~~~~~~~ 408 (416)
T 1rrv_A 358 ESLSAALTTV-LAPETRARAEAVAGMVLT--DGAA-AAADLVLAAVGREKPAVPA 408 (416)
T ss_dssp HHHHHHHHHH-TSHHHHHHHHHHTTTCCC--CHHH-HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHh-hCHHHHHHHHHHHHHHhh--cCcH-HHHHHHHHHHhccCCCCcc
Confidence 4688999999 999999999999998886 3566 999999 999999998875
No 4
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=96.61 E-value=0.0018 Score=48.92 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5669 4 SRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYV 46 (116)
Q Consensus 4 l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v 46 (116)
..++|+++|+||+|+++|++++..++++| +|.+ ++.++|-+
T Consensus 358 ~~~al~~lL~d~~~r~~a~~l~~~~~~~~-~~~~-~a~~le~l 398 (400)
T 4amg_A 358 GAEQCRRLLDDAGLREAALRVRQEMSEMP-PPAE-TAAXLVAL 398 (400)
T ss_dssp SHHHHHHHHHCHHHHHHHHHHHHHHHTSC-CHHH-HHHHHHHH
T ss_pred hHHHHHHHHcCHHHHHHHHHHHHHHHcCC-CHHH-HHHHHHHh
Confidence 45799999999999999999999999999 6655 56777754
No 5
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=96.34 E-value=0.0087 Score=45.92 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=42.2
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG 51 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~g 51 (116)
+.+.++|.++++|++|++++.+++..+++. .+.+.++.++|.+++..|
T Consensus 377 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~ 424 (424)
T 2iya_A 377 EKLREAVLAVASDPGVAERLAAVRQEIREA--GGARAAADILEGILAEAG 424 (424)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhccC
Confidence 468899999999999999999999999875 689999999999887654
No 6
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=96.20 E-value=0.0054 Score=47.27 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=40.9
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG 51 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~g 51 (116)
+.|.++|.++++ |+|++++.+++..+.+ ++.+.+++|+|.+++.+.
T Consensus 340 ~~l~~ai~~ll~-~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~ 385 (404)
T 3h4t_A 340 ESLSAALATALT-PGIRARAAAVAGTIRT---DGTTVAAKLLLEAISRQR 385 (404)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhCC
Confidence 468899999998 9999999999999988 799999999999998653
No 7
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=94.53 E-value=0.093 Score=39.75 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=40.1
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
+.|.++|.++++|++|++++.+++..+.+. .+.+.++.++|-+++
T Consensus 369 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 369 DTLLAAVGAVAADPALLARVEAMRGHVRRA--GGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh
Confidence 468899999999999999999999999887 588999999988764
No 8
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=94.46 E-value=0.021 Score=45.53 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=39.2
Q ss_pred chHHHHHHHHhc---CHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhCCCCCCcccC
Q psy5669 2 RSSRRKVQPACM---SPQYKTNVQRLSTIFRS---EPLHPLQKAIRSIEYVIAHRGAPHLKTKA 59 (116)
Q Consensus 2 ~~l~~aI~~vl~---n~~Yk~na~~ls~~~~d---~p~~P~~~av~wiE~v~r~~g~~~l~~~~ 59 (116)
+.|.++|+++++ |++|+++|++++..++. .-=+........+|.+.+ ++.++++++
T Consensus 417 ~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~~~~--~~~~~~~~~ 478 (480)
T 2vch_A 417 EEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKA--HKKELEQNG 478 (480)
T ss_dssp HHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHHH--HHHHHHC--
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hHHHhhhcC
Confidence 578999999998 88999999999999987 333334455556666544 444555544
No 9
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=94.24 E-value=0.09 Score=40.60 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=40.0
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+.|.++|.++++|++|++++.+++..+.+.+ ..+.++..+|-+++.
T Consensus 391 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 391 DQLRESVKRVLDDPAHRAGAARMRDDMLAEP--SPAEVVGICEELAAG 436 (441)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999864 577888999987764
No 10
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=93.82 E-value=0.087 Score=39.59 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=37.3
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
+.|.++|.++++||+|++++.+++..+.+.+ ..+.++.++|-+++
T Consensus 344 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 344 EQFTDSIATVLGDTGFAAAAIKLSDEITAMP--HPAALVRTLENTAA 388 (391)
T ss_dssp HHHHHHHHHHHTCTHHHHHHHHHHHHHHTSC--CHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 4688999999999999999999999999876 45778888886654
No 11
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=93.49 E-value=0.19 Score=37.52 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=39.7
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
+.|.++|.++++|++|++++.+++..+.+. .+.+.++..+|-+++
T Consensus 354 ~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 354 ASIREAVERLAADSAVRERVRRMQRDILSS--GGPARAADEVEAYLG 398 (402)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHhhC--ChHHHHHHHHHHHHh
Confidence 468899999999999999999999999876 488889999987765
No 12
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=91.23 E-value=0.23 Score=37.41 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=33.1
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIE 44 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE 44 (116)
+.|.++|.++++||+|++++.+.+..+.+.+ ..+.++..+|
T Consensus 356 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ 396 (398)
T 4fzr_A 356 ESVLAACARIRDDSSYVGNARRLAAEMATLP--TPADIVRLIE 396 (398)
T ss_dssp -CHHHHHHHHHHCTHHHHHHHHHHHHHTTSC--CHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHcCC--CHHHHHHHHh
Confidence 4688999999999999999999999999887 3445555544
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=89.82 E-value=0.45 Score=36.16 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=39.1
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHR 50 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~ 50 (116)
+.|.++|.++++|+++++++.+.+..+.+. .+.+.++.++|.+++..
T Consensus 355 ~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 401 (430)
T 2iyf_A 355 DLLRETALALVDDPEVARRLRRIQAEMAQE--GGTRRAADLIEAELPAR 401 (430)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--CHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHhhcc
Confidence 468899999999999999999999988875 37888888888766543
No 14
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=88.24 E-value=0.78 Score=34.53 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=34.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 5 RRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 5 ~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
.+++.++++||+|++++.+++..+.+.+ ..+.++.++|-+++
T Consensus 356 ~~~l~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~ 397 (398)
T 3oti_A 356 ADLLRRLIGDESLRTAAREVREEMVALP--TPAETVRRIVERIS 397 (398)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHhc
Confidence 3566699999999999999999999886 45678888887653
No 15
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=88.16 E-value=0.58 Score=35.10 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=35.4
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVI 47 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~ 47 (116)
+.|.++|.++++||++++++.+.+..+.+.+ +.+.++..+|-++
T Consensus 364 ~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 407 (412)
T 3otg_A 364 DSVSGAAKRLLAEESYRAGARAVAAEIAAMP--GPDEVVRLLPGFA 407 (412)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHSC--CHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHh
Confidence 4688999999999999999999999998876 4555666555554
No 16
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=86.90 E-value=0.51 Score=37.17 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=27.7
Q ss_pred chHHHHHHHHhcCH---HHHHHHHHHHHHHhcCC
Q psy5669 2 RSSRRKVQPACMSP---QYKTNVQRLSTIFRSEP 32 (116)
Q Consensus 2 ~~l~~aI~~vl~n~---~Yk~na~~ls~~~~d~p 32 (116)
+.|.++|+++++|+ +|++||++++..+++..
T Consensus 400 ~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~ 433 (456)
T 2c1x_A 400 SGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433 (456)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhh
Confidence 46889999999998 89999999999998754
No 17
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=86.58 E-value=0.62 Score=36.76 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=27.0
Q ss_pred chHHHHHHHHhcCH---HHHHHHHHHHHHHhcC
Q psy5669 2 RSSRRKVQPACMSP---QYKTNVQRLSTIFRSE 31 (116)
Q Consensus 2 ~~l~~aI~~vl~n~---~Yk~na~~ls~~~~d~ 31 (116)
+.|.++|+++++|+ +|++||++++..+++.
T Consensus 427 ~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a 459 (482)
T 2pq6_A 427 EELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459 (482)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 46899999999999 6999999999999864
No 18
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=84.52 E-value=1.3 Score=34.79 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=25.9
Q ss_pred chHHHHHHHHhc-CHHHHHHHHHHHHHHhc
Q psy5669 2 RSSRRKVQPACM-SPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 2 ~~l~~aI~~vl~-n~~Yk~na~~ls~~~~d 30 (116)
+.|.++|+++++ +++|++||++++..+++
T Consensus 413 ~~l~~ai~~ll~~~~~~r~~a~~l~~~~~~ 442 (463)
T 2acv_A 413 EEIEKGLKDLMDKDSIVHKKVQEMKEMSRN 442 (463)
T ss_dssp HHHHHHHHHHTCTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 468899999997 58999999999999886
No 19
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=84.47 E-value=0.9 Score=36.14 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=27.6
Q ss_pred chHHHHHHHHhcCH---HHHHHHHHHHHHHhcCC
Q psy5669 2 RSSRRKVQPACMSP---QYKTNVQRLSTIFRSEP 32 (116)
Q Consensus 2 ~~l~~aI~~vl~n~---~Yk~na~~ls~~~~d~p 32 (116)
+.|.++|+++++|+ +|++||++++..+++..
T Consensus 402 ~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~ 435 (454)
T 3hbf_A 402 ESIKKALELTMSSEKGGIMRQKIVKLKESAFKAV 435 (454)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhh
Confidence 46899999999998 89999999999998664
No 20
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=81.46 E-value=3.8 Score=24.79 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5669 64 WYQTSQLDVIASCTLGLGLVLYTLARIGTS 93 (116)
Q Consensus 64 ~~q~~~lDV~~~l~~v~~~~~~~~~~~~~~ 93 (116)
+|.|..|-+-.++++.+++++.++..+.+.
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 367888888877777777777766666554
No 21
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=79.77 E-value=3.1 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5669 64 WYQTSQLDVIASCTLGLGLVLYTLARIGTS 93 (116)
Q Consensus 64 ~~q~~~lDV~~~l~~v~~~~~~~~~~~~~~ 93 (116)
+|.|+.|-+-.+++..+++++.++..+.+.
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 478888888877777776666665555443
No 22
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=71.37 E-value=6.1 Score=29.71 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=33.2
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+.|.++|.++++||+.++.+.+-+.-+. +| ++.+..+..+|-++|-
T Consensus 312 ~~L~~~i~~ll~d~~~~~~m~~~a~~~~-~~-~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 312 AELAAQLSEVLMHPETLRSMADQARSLA-KP-EATRTVVDACLEVARG 357 (365)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHTC-CT-THHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHhcC-Cc-cHHHHHHHHHHHHHcc
Confidence 4688999999999988777666555443 34 5788888888877653
No 23
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=63.69 E-value=9.8 Score=19.56 Aligned_cols=19 Identities=21% Similarity=-0.050 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5669 67 TSQLDVIASCTLGLGLVLY 85 (116)
Q Consensus 67 ~~~lDV~~~l~~v~~~~~~ 85 (116)
.|.||.++++..++++.++
T Consensus 5 CYiLDgiL~iYgii~T~Ly 23 (33)
T 2hac_A 5 CYLLDGILFIYGVILTALF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHH
Confidence 4778998777666555444
No 24
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=57.94 E-value=21 Score=26.72 Aligned_cols=45 Identities=13% Similarity=-0.059 Sum_probs=32.6
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
+.|.+++.++++||.|++.+++.. +.-.+.+|.|...+.-+-..+
T Consensus 257 ~~l~~al~~~~~~p~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~ 301 (314)
T 2dvz_A 257 NKLRDAAVVALKDPKVIKALDDQG--SAPSGNTPEEFAKEIKEQYDW 301 (314)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--EEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHCC--CcCCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999988764 344567888765554444333
No 25
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=56.97 E-value=3.5 Score=25.13 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5669 65 YQTSQLDVIASCTLGLGLVLYTLARI 90 (116)
Q Consensus 65 ~q~~~lDV~~~l~~v~~~~~~~~~~~ 90 (116)
|.|..|-+-.+++..+++++.++..+
T Consensus 14 YDY~tLRigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 14 YDYYRLRVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHheeccchhHHHHHHHHHHHHH
Confidence 77888888877776666665554433
No 26
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=48.79 E-value=5.4 Score=18.98 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=6.9
Q ss_pred cCCCcccccC
Q psy5669 106 ATKPDRNKKN 115 (116)
Q Consensus 106 ~~~~~~~~~~ 115 (116)
.|+|.||.||
T Consensus 2 rkrpkrkrkn 11 (26)
T 4g9j_C 2 RKRPKRKRKN 11 (26)
T ss_pred Cccccccccc
Confidence 4567777776
No 27
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.86 E-value=10 Score=22.02 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=13.2
Q ss_pred hHHHHHHHH-hcCHHHHH
Q psy5669 3 SSRRKVQPA-CMSPQYKT 19 (116)
Q Consensus 3 ~l~~aI~~v-l~n~~Yk~ 19 (116)
+...|++.+ +.||.|..
T Consensus 23 sweqamr~i~i~DPrY~a 40 (59)
T 2b7e_A 23 SFSRIISELGTRDPRYWM 40 (59)
T ss_dssp CHHHHHHHHHHHCTHHHH
T ss_pred cHHHHHHHhccCCCcccc
Confidence 356788888 88999874
No 28
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=45.78 E-value=23 Score=26.16 Aligned_cols=40 Identities=5% Similarity=-0.018 Sum_probs=29.3
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSI 43 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wi 43 (116)
+.|.+++.+++.||.|++.+++.. +.-.+.+|.|...+.-
T Consensus 244 ~~l~~al~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 283 (301)
T 2qpq_A 244 QKLYDGIAKVMQRDDVQKKLADLG--YSTASDGPEVFQKMVE 283 (301)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--CEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHCC--CcCCCCCHHHHHHHHH
Confidence 468899999999999999988764 3334567777554443
No 29
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=44.79 E-value=51 Score=23.92 Aligned_cols=47 Identities=2% Similarity=-0.194 Sum_probs=33.7
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+++.++|.++++|+..++.+.+-+..... ..+....+-.|.+...+.
T Consensus 337 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~ 383 (406)
T 2gek_A 337 DGMAAALIGILEDDQLRAGYVARASERVH-RYDWSVVSAQIMRVYETV 383 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GGBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 56889999999999866665554444444 578888777777766554
No 30
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=44.45 E-value=47 Score=19.69 Aligned_cols=31 Identities=13% Similarity=0.051 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5669 67 TSQLDVIASCTLGLGLVLYTLARIGTSFAEFT 98 (116)
Q Consensus 67 ~~~lDV~~~l~~v~~~~~~~~~~~~~~~~~~~ 98 (116)
+|+..-+=+-.+++..+++++ -++-++.++|
T Consensus 11 ~YDY~tLRigGLifA~vLfi~-GI~iilS~kc 41 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIA-GIALALSGKC 41 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHH-HHHHHHTTHH
T ss_pred ccchHHheecchhhHHHHHHH-HHHHHHcCcc
Confidence 455555655555655555543 3334444444
No 31
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=43.50 E-value=29 Score=25.82 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=28.6
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPL--HPLQKAIRSI 43 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~--~P~~~av~wi 43 (116)
+.|.+++.+++.||.|++.+++.. +.-.+. +|.|...+.-
T Consensus 253 ~~l~~al~~~~~~p~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 294 (312)
T 2f5x_A 253 DKLVKSLQAGLADPKFQERMKQLG--AEVLTNEANPEALQAKVK 294 (312)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT--CEECGGGCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHCC--CcccCCCCCHHHHHHHHH
Confidence 468899999999999999887654 333455 7776444433
No 32
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=40.89 E-value=89 Score=22.83 Aligned_cols=47 Identities=4% Similarity=-0.094 Sum_probs=35.1
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+.+.++| ++++|+..++.+.+-+...-.+.+++...+-.|.+..-+-
T Consensus 344 ~~la~~i-~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 390 (413)
T 3oy2_A 344 DDLVEAF-TFFKDEKNRKEYGKRVQDFVKTKPTWDDISSDIIDFFNSL 390 (413)
T ss_dssp HHHHHHH-HHTTSHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4688999 9999998877666655555556678888888887766544
No 33
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=39.97 E-value=39 Score=17.36 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=19.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 25 STIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 25 s~~~~d~p~~P~~~av~wiE~v~r 48 (116)
..+++++|-++.+=++.|.+-..+
T Consensus 16 ~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 16 VEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhh
Confidence 567889999999999888876654
No 34
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=39.91 E-value=18 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=10.1
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhc
Q psy5669 8 VQPACMSPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 8 I~~vl~n~~Yk~na~~ls~~~~d 30 (116)
|++++..|.|++.+..|+..+++
T Consensus 75 L~~~l~SPQF~Qal~~fs~AL~s 97 (155)
T 2kqz_A 75 IQNTLTSPQFQQALGMFSAALAS 97 (155)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHh
Confidence 44444444444444444444443
No 35
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=37.31 E-value=57 Score=23.80 Aligned_cols=47 Identities=4% Similarity=-0.102 Sum_probs=31.3
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r 48 (116)
+.+.++|.++++|+..++.+.+-+.....+.++....+..|.+..-+
T Consensus 338 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 338 TGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999765554443333333446777777777766544
No 36
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=36.28 E-value=87 Score=20.24 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhCC-CCCCcccCCCC
Q psy5669 36 LQKAIRSIEYVIAHRG-APHLKTKATSL 62 (116)
Q Consensus 36 ~~~av~wiE~v~r~~g-~~~l~~~~~~l 62 (116)
.+....-||-+++.|+ .+.|...+.+|
T Consensus 46 k~IM~~NIdkvLeRGEkLd~L~~KTe~L 73 (119)
T 2kog_A 46 VDIMRVNVDKVLERDQKLSELDDRADAL 73 (119)
T ss_dssp HHHHHHHHHHHHCCCCSSCCCCSCCSCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4556667888888875 34555555544
No 37
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=35.80 E-value=63 Score=23.23 Aligned_cols=49 Identities=4% Similarity=-0.125 Sum_probs=33.9
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHR 50 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~~ 50 (116)
+.+.++|.++++|+..++.+.+-+...-.+-+++...+-.|.+..-+..
T Consensus 332 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 380 (394)
T 3okp_A 332 DKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSEP 380 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 5788999999999986665554444333344677888888877765544
No 38
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=35.23 E-value=56 Score=17.73 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 25 STIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 25 s~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
..+++++|-++.+-++.|.+-..+.
T Consensus 24 ~evlr~qP~Di~~Faa~yF~~l~~~ 48 (50)
T 2kyg_A 24 VEVLRQQPPDLVEFAVEYFTRLREA 48 (50)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHc
Confidence 5678899999999999998866553
No 39
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=33.74 E-value=3.1 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=20.7
Q ss_pred CchHHHHHHHHhcCHHHHHHHHHHHHHHhcC
Q psy5669 1 MRSSRRKVQPACMSPQYKTNVQRLSTIFRSE 31 (116)
Q Consensus 1 ~~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~ 31 (116)
|+++.++|.++..+++++++.+++..-+.+.
T Consensus 1 Me~i~~~l~~~~~~~~~~~~~~~~~~~vl~d 31 (106)
T 2k7r_A 1 MEPIGRSLQGVTGRPDFQKRLEQMKEKVMKD 31 (106)
T ss_dssp CCCTTCSCCCCSCCCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHhcccHHHHHHHHHHHHHcC
Confidence 6777777777777777777776655544444
No 40
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=33.07 E-value=42 Score=27.46 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcC
Q psy5669 4 SRRKVQPACMSPQYKTNVQRLSTIFRSE 31 (116)
Q Consensus 4 l~~aI~~vl~n~~Yk~na~~ls~~~~d~ 31 (116)
..-++..|.+||+|++.|...+.-+-|.
T Consensus 66 ~L~~LS~lTgd~~Y~q~A~~~~~yf~dh 93 (543)
T 2v8i_A 66 VMSGLSQLSGDPRYQKRAEDIVRYHFQN 93 (543)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHc
Confidence 4568899999999999988877766655
No 41
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=31.97 E-value=38 Score=24.57 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=28.2
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+.|.++|.++++|+.-++.+.+.+..+. . -...+..+..++-.+..
T Consensus 322 ~~la~~i~~ll~d~~~~~~~~~~~~~~~-~-~~~~~~i~~~i~~~~~~ 367 (376)
T 1v4v_A 322 EGVYRVVKGLLENPEELSRMRKAKNPYG-D-GKAGLMVARGVAWRLGL 367 (376)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHSCCSSC-C-SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhChHhhhhhcccCCCCC-C-ChHHHHHHHHHHHHhcc
Confidence 4688999999999976655554222221 1 14566666666655543
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.60 E-value=56 Score=16.65 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=21.5
Q ss_pred CchHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPAC-MSPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl-~n~~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++ .|..-...+.++.+++..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 667788888877 445577788888887754
No 43
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=30.39 E-value=61 Score=23.93 Aligned_cols=43 Identities=2% Similarity=-0.118 Sum_probs=25.2
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEY 45 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~ 45 (116)
+.+.++|.++++|+..++.+.+-+.....+ ++....+-.+.+.
T Consensus 379 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~~ 421 (438)
T 3c48_A 379 HAWADALATLLDDDETRIRMGEDAVEHART-FSWAATAAQLSSL 421 (438)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 468899999999997655443333322223 4555544444443
No 44
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=30.37 E-value=62 Score=18.21 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Q psy5669 21 VQRLSTIFRSEPLHPLQKAIRSIEYVIAHR 50 (116)
Q Consensus 21 a~~ls~~~~d~p~~P~~~av~wiE~v~r~~ 50 (116)
++-+..+-+.+|.+|.+-.+ ||.+++.
T Consensus 22 ~~GL~~lak~rP~DPi~~LA---~~Ll~~~ 48 (55)
T 3g36_A 22 LQGMAVLAKERPPNPIEFLA---SYLLKNK 48 (55)
T ss_dssp HHHHHHHHHHCCSCHHHHHH---HHHHHHG
T ss_pred HHHHHHHHHhCCCCHHHHHH---HHHHHhC
Confidence 44566777789999987554 4555553
No 45
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=28.92 E-value=78 Score=20.95 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=37.7
Q ss_pred hHHHHHHHHhcCHHHHH-----HH--------HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q psy5669 3 SSRRKVQPACMSPQYKT-----NV--------QRLSTIFRSEPLHPLQKAIRSIEYVIAHRGAPHLKT 57 (116)
Q Consensus 3 ~l~~aI~~vl~n~~Yk~-----na--------~~ls~~~~d~p~~P~~~av~wiE~v~r~~g~~~l~~ 57 (116)
.+.++|++.++.+.+.. -+ ..++..|+.+-..-.+.|...++|+...||.+.+++
T Consensus 5 ~~~~~LN~~i~~El~A~~~Yl~~a~~~~~~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~l~~ 72 (165)
T 1eum_A 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINT 72 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 46677777775553222 22 344556666655677889999999999999887755
No 46
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.64 E-value=65 Score=16.48 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=21.3
Q ss_pred CchHHHHHHHHhcCH-HHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPACMSP-QYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl~n~-~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++... .-...+.++.+++..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 677888899888443 356677778777654
No 47
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=28.48 E-value=1e+02 Score=21.94 Aligned_cols=21 Identities=5% Similarity=0.001 Sum_probs=15.8
Q ss_pred chHHHHHHHHhcCHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQ 22 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~ 22 (116)
+++.++|.++++|+..++.+.
T Consensus 325 ~~l~~~i~~l~~~~~~~~~~~ 345 (374)
T 2iw1_A 325 EQLNEVLRKALTQSPLRMAWA 345 (374)
T ss_dssp HHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHH
Confidence 468899999999987554443
No 48
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=27.91 E-value=83 Score=23.08 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=27.3
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYV 46 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v 46 (116)
+.+.++|.++++|+..++.+.+-+...-.+.++....+-.|.+..
T Consensus 367 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 411 (416)
T 2x6q_A 367 NEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 468899999999987655544333322223356666666665543
No 49
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.74 E-value=79 Score=16.16 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=21.1
Q ss_pred CchHHHHHHHHhc-CHHHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPACM-SPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl~-n~~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++. |..-...+.++.+++..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 6677888888873 34466677888777654
No 50
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=24.65 E-value=92 Score=19.64 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy5669 24 LSTIFRSEPLHPLQKAIRSIEYVIAH 49 (116)
Q Consensus 24 ls~~~~d~p~~P~~~av~wiE~v~r~ 49 (116)
+..++..||-+|.+=++.+.+.+.+.
T Consensus 57 tv~Ll~~RPeDPv~FLaeYF~kL~~~ 82 (95)
T 4f9k_A 57 IVHLCISKPERPMKFLREHFEKLEKE 82 (95)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 35667889999999999998877654
No 51
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=24.64 E-value=97 Score=17.13 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHH
Q psy5669 25 STIFRSEPLHPLQKAIRSIEYVIA 48 (116)
Q Consensus 25 s~~~~d~p~~P~~~av~wiE~v~r 48 (116)
..+++++|-++.+=++.|.+-..+
T Consensus 19 ~evlr~qP~Di~~Faa~YF~~L~~ 42 (54)
T 2izy_A 19 VEVLRQQPPDLVDFAVEYFTRLRE 42 (54)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHH
Confidence 567889999999998888886654
No 52
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=24.52 E-value=53 Score=18.56 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=8.2
Q ss_pred HHhcCHHHHHHHHHHHHH
Q psy5669 10 PACMSPQYKTNVQRLSTI 27 (116)
Q Consensus 10 ~vl~n~~Yk~na~~ls~~ 27 (116)
+.++||+..+-+.++..+
T Consensus 39 ~~~~dP~v~~~~~~L~~~ 56 (62)
T 2lnm_A 39 KYQNDKEVMDVFNKISQL 56 (62)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHH
Confidence 334444444444444444
No 53
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.19 E-value=66 Score=16.36 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=20.2
Q ss_pred CchHHHHHHHHhc-CHHHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPACM-SPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl~-n~~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++. |..-...+.++.+++..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 5667778888874 33466777888877654
No 54
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.05 E-value=76 Score=16.23 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.2
Q ss_pred CchHHHHHHHHh-cCHHHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPAC-MSPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl-~n~~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++ .|..-...+.++..++..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 456677777777 455677788888887754
No 55
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=21.76 E-value=1.5e+02 Score=22.40 Aligned_cols=45 Identities=16% Similarity=-0.019 Sum_probs=26.8
Q ss_pred chHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5669 2 RSSRRKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYV 46 (116)
Q Consensus 2 ~~l~~aI~~vl~n~~Yk~na~~ls~~~~d~p~~P~~~av~wiE~v 46 (116)
+.+.++|.++++|+..++.+.+-+.....+-++....+-.|.+..
T Consensus 412 ~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y 456 (499)
T 2r60_A 412 EDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456 (499)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 468899999999997655444333333323345555555555433
No 56
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=21.47 E-value=99 Score=24.09 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=26.9
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q psy5669 8 VQPACMSPQYKTNVQRLSTIFRSEPL-HPLQKAIRSIEYV 46 (116)
Q Consensus 8 I~~vl~n~~Yk~na~~ls~~~~d~p~-~P~~~av~wiE~v 46 (116)
..++++.|.|+.+-.-+..-.....- ...+.+.||.+|.
T Consensus 361 ~~~l~~~~~f~~~~d~l~~r~~~~~~~~~~~~~~ww~~~~ 400 (415)
T 3aql_A 361 AWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQ 400 (415)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHHHHHHhhCCCcccchHHHHHHHHH
Confidence 34677788888877666555544432 3477899999985
No 57
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.18 E-value=81 Score=16.09 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=19.9
Q ss_pred CchHHHHHHHHhc-CHHHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPACM-SPQYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl~-n~~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++. +..-...+.++.+++..
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 5567777888774 33466677888777654
No 58
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.02 E-value=97 Score=15.82 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=20.0
Q ss_pred CchHHHHHHHHhcCH-HHHHHHHHHHHHHhc
Q psy5669 1 MRSSRRKVQPACMSP-QYKTNVQRLSTIFRS 30 (116)
Q Consensus 1 ~~~l~~aI~~vl~n~-~Yk~na~~ls~~~~d 30 (116)
|..|.+.+.+++... .-...+.++.+++..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 677888888888443 466677777776643
No 59
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=20.55 E-value=64 Score=25.53 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHhcCHHHHHHHHHH----------HHHHhcCCCCH-HHHHHHHHHHHHHhCC
Q psy5669 6 RKVQPACMSPQYKTNVQRL----------STIFRSEPLHP-LQKAIRSIEYVIAHRG 51 (116)
Q Consensus 6 ~aI~~vl~n~~Yk~na~~l----------s~~~~d~p~~P-~~~av~wiE~v~r~~g 51 (116)
+++..+|.|+.|.++.... ...+++...+| ...++.-..++++.|+
T Consensus 299 e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sGq 355 (411)
T 2kr0_A 299 EIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQ 355 (411)
T ss_dssp HHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcCC
Confidence 4566666777665543321 22333333333 3455566666766654
No 60
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.30 E-value=79 Score=19.32 Aligned_cols=7 Identities=14% Similarity=1.070 Sum_probs=3.4
Q ss_pred HHHHHHH
Q psy5669 64 WYQTSQL 70 (116)
Q Consensus 64 ~~q~~~l 70 (116)
||+-+-+
T Consensus 64 wwkn~K~ 70 (91)
T 3hd7_A 64 WWKNLKM 70 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 61
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=20.13 E-value=1.8e+02 Score=19.44 Aligned_cols=18 Identities=17% Similarity=-0.140 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy5669 38 KAIRSIEYVIAHRGAPHL 55 (116)
Q Consensus 38 ~av~wiE~v~r~~g~~~l 55 (116)
..--|-|++-+-+.++-+
T Consensus 22 L~~l~~e~~~~g~n~S~l 39 (138)
T 2k21_A 22 LTKLWQETVQQGGNMSGL 39 (138)
T ss_dssp HHHHHHHHHHTCCTTSSG
T ss_pred HHHHHHHHHhcCCCCCCc
Confidence 455688988755444333
Done!