RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5669
         (116 letters)



>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase. 
          Length = 500

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 15  PQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRGAPHLKTKATSLPWYQTSQLDVIA 74
           P YK N+ RLS+I   +P+ PL +A+  IE+V+ H+GA HL+  A  L WYQ   LDVI 
Sbjct: 410 PSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAHDLTWYQYHSLDVIG 469


>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
          Length = 507

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 6   RKVQPACMSPQYKTNVQRLSTIFRSEPLHPLQKAIRSIEYVIAHRG-APHLKTKATSLPW 64
             +     +P+Y+ N++ L  + R +P+ PL KAI   E+VI ++     LKTKA ++ +
Sbjct: 424 LAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSY 483

Query: 65  Y 65
            
Sbjct: 484 S 484


>gnl|CDD|116804 pfam08218, Citrate_ly_lig, Citrate lyase ligase C-terminal domain. 
           This family is composed of the C-terminal domain of
           citrate lyase ligase EC:6.2.1.22.
          Length = 182

 Score = 27.2 bits (61), Expect = 1.5
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 37  QKAIRSIEYVIAHRGAPHLKTKATSLPWYQTSQLDVIAS-CTLGLGLVLYTLA 88
           ++  + ++ V  H G  ++ ++AT   ++   Q  VI S  T+ L +    +A
Sbjct: 51  KQGTKDLDNVTVHSGGDYIISRATFPSYFIKEQDVVIKSQTTIDLRIFREYIA 103


>gnl|CDD|219508 pfam07672, MFS_Mycoplasma, Mycoplasma MFS transporter.  These
           proteins share some similarity with members of the Major
           Facilitator Superfamily (MFS).
          Length = 265

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 63  PWYQTSQLDVIASCTLGLGLVLYTLARIGTS 93
             Y+ +++ +      G G VLYT+  I  S
Sbjct: 231 KGYKPNEVGIQFGLIWGFGYVLYTIFDILLS 261


>gnl|CDD|225595 COG3053, CitC, Citrate lyase synthetase [Energy production and
           conversion].
          Length = 352

 Score = 26.6 bits (59), Expect = 3.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 36  LQKAIRSIEYVIAHRGAPHLKTKATSLPWYQTSQLDVIASCTL 78
           ++K    +  V  H G+ ++ ++AT   ++   Q  V  S T 
Sbjct: 196 VKKGTADLPNVTVHSGSDYIISRATFPAYFIKEQSVVNDSQTE 238


>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1066

 Score = 25.8 bits (58), Expect = 5.6
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 36  LQKAIRSIEYVIAHRGAPHLK 56
           LQKA+RS+E  +        +
Sbjct: 394 LQKALRSLEIGVTGLDEDLFE 414


>gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as
          found in prokaryota and eukaryota, and similar
          proteins.  The typical glycerophosphodiester
          phosphodiesterase domain (GDPD) consists of a TIM
          barrel and a small insertion domain named the
          GDPD-insertion (GDPD-I) domain, which is specific for
          GDPD proteins. This family corresponds to both typical
          GDPD domain and GDPD-like domain which lacks the GDPD-I
          region. Members in this family mainly consist of a
          large family of prokaryotic and eukaryotic
          glycerophosphodiester phosphodiesterases (GP-GDEs, EC
          3.1.4.46), and a number of uncharacterized homologs.
          Sphingomyelinases D (SMases D) (sphingomyelin
          phosphodiesterase D, EC 3.1.4.41) from spider venom,
          SMases D-like proteins, and phospholipase D (PLD) from
          several pathogenic bacteria are also included in this
          family. GDPD plays an essential role in glycerol
          metabolism and catalyzes the hydrolysis of
          glycerophosphodiesters to sn-glycerol-3-phosphate (G3P)
          and the corresponding alcohols are major sources of
          carbon and phosphate. Its catalytic mechanism is based
          on the metal ion-dependent acid-base reaction, which is
          similar to that of phosphoinositide-specific
          phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD
          related proteins and PI-PLCs, belong to the superfamily
          of PI-PLC-like phosphodiesterases.
          Length = 189

 Score = 25.3 bits (56), Expect = 8.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 46 VIAHRGAPHL 55
          +IAHRGA   
Sbjct: 1  IIAHRGASGE 10


>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope
           biogenesis, outer membrane].
          Length = 1531

 Score = 25.6 bits (56), Expect = 8.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 46  VIAHRGAPHLKTKATSLPWYQT 67
           V   RG PHLK KA      QT
Sbjct: 411 VTTQRGYPHLKKKAGYNGATQT 432


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,473,017
Number of extensions: 438207
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 17
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)